AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene52395

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52395.t1 MTR_2g436460 94.723 379 20 0 1 379 1 379 0.0 722
MS.gene52395.t1 MTR_2g437260 48.387 341 173 2 39 377 28 367 1.41e-113 337
MS.gene52395.t1 MTR_2g437040 49.030 361 173 6 23 379 20 373 1.39e-110 328
MS.gene52395.t1 MTR_2g437200 48.138 376 156 4 39 376 24 398 3.87e-110 328
MS.gene52395.t1 MTR_2g437170 49.474 380 179 7 10 377 13 391 9.02e-110 328
MS.gene52395.t1 MTR_2g436440 48.837 344 173 2 38 379 37 379 2.81e-109 325
MS.gene52395.t1 MTR_4g120380 49.432 352 174 3 24 373 20 369 6.60e-109 324
MS.gene52395.t1 MTR_2g437150 48.936 376 179 7 16 379 19 393 1.74e-108 324
MS.gene52395.t1 MTR_4g119550 48.387 341 172 3 40 379 46 383 3.16e-107 320
MS.gene52395.t1 MTR_2g437080 45.479 376 189 3 6 379 12 373 3.74e-107 320
MS.gene52395.t1 MTR_2g437020 47.268 366 186 5 18 379 11 373 5.59e-107 319
MS.gene52395.t1 MTR_2g436400 45.429 361 188 3 27 379 21 380 1.10e-106 318
MS.gene52395.t1 MTR_2g437030 46.094 384 199 5 1 379 79 459 1.86e-106 321
MS.gene52395.t1 MTR_2g437180 49.863 365 167 7 24 377 22 381 4.70e-106 317
MS.gene52395.t1 MTR_2g437160 49.565 345 169 4 39 379 55 398 1.87e-105 317
MS.gene52395.t1 MTR_2g437130 49.704 338 169 1 42 379 38 374 1.53e-104 313
MS.gene52395.t1 MTR_2g437060 44.737 380 201 4 2 379 16 388 6.41e-104 312
MS.gene52395.t1 MTR_2g437990 50.568 352 165 6 34 377 33 383 1.15e-103 313
MS.gene52395.t1 MTR_2g019810 49.263 339 157 5 45 376 29 359 1.29e-103 310
MS.gene52395.t1 MTR_2g437240 47.849 372 155 5 43 376 28 398 1.62e-103 311
MS.gene52395.t1 MTR_4g120380 49.850 333 163 3 24 354 20 350 7.82e-103 310
MS.gene52395.t1 MTR_2g437120 47.135 384 187 7 8 377 3 384 1.44e-100 304
MS.gene52395.t1 MTR_2g076320 49.008 353 170 7 34 377 33 384 1.64e-100 303
MS.gene52395.t1 MTR_2g437960 50.150 333 160 5 49 376 55 386 3.61e-100 303
MS.gene52395.t1 MTR_4g119580 46.988 332 175 1 42 373 39 369 3.88e-100 301
MS.gene52395.t1 MTR_2g437960 50.150 333 160 5 49 376 55 386 7.78e-100 303
MS.gene52395.t1 MTR_2g438010 47.875 353 174 5 34 377 53 404 1.40e-99 302
MS.gene52395.t1 MTR_2g437100 47.200 375 183 7 9 376 29 395 2.57e-99 301
MS.gene52395.t1 MTR_2g438020 46.322 367 158 4 49 377 73 438 1.22e-97 299
MS.gene52395.t1 MTR_2g019840 46.647 343 178 4 39 379 35 374 3.60e-94 287
MS.gene52395.t1 MTR_2g437940 45.504 367 165 8 16 377 19 355 4.92e-88 271
MS.gene52395.t1 MTR_3g450500 37.349 332 199 4 49 373 40 369 2.51e-62 204
MS.gene52395.t1 MTR_2g437160 53.179 173 80 1 205 377 134 305 1.92e-54 182
MS.gene52395.t1 MTR_2g437160 45.977 87 45 1 39 123 55 141 4.55e-15 75.9
MS.gene52395.t1 MTR_4g119570 41.365 249 112 2 124 372 13 227 6.72e-54 178
MS.gene52395.t1 MTR_4g007490 33.239 355 217 6 32 373 20 367 2.03e-52 179
MS.gene52395.t1 MTR_2g437090 47.531 162 84 1 218 379 1 161 6.20e-47 158
MS.gene52395.t1 MTR_2g436370 41.489 188 89 4 27 206 20 194 2.47e-39 139
MS.gene52395.t1 MTR_8g080990 27.463 335 238 4 40 370 35 368 1.06e-35 134
MS.gene52395.t1 MTR_8g081000 26.844 339 241 6 40 373 48 384 5.09e-33 127
MS.gene52395.t1 MTR_8g081000 26.844 339 241 6 40 373 48 384 7.06e-33 127
MS.gene52395.t1 MTR_8g081000 26.844 339 241 6 40 373 48 384 8.16e-33 127
MS.gene52395.t1 MTR_4g049400 42.735 117 61 2 34 144 33 149 1.02e-17 82.0
MS.gene52395.t1 MTR_3g085240 37.975 158 84 3 7 163 22 166 3.17e-16 78.2
MS.gene52395.t1 MTR_3g085240 42.222 90 35 1 278 367 176 248 5.28e-16 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52395.t1 AT5G07900 32.303 356 233 5 26 374 46 400 5.97e-60 199
MS.gene52395.t1 AT1G21150 31.302 361 222 6 28 371 33 384 1.00e-51 177
MS.gene52395.t1 AT1G21150 31.302 361 222 6 28 371 97 448 4.80e-51 177
MS.gene52395.t1 AT1G21150 30.372 349 220 5 37 371 9 348 1.94e-50 173
MS.gene52395.t1 AT1G61970 30.749 374 219 5 23 359 29 399 3.61e-46 163
MS.gene52395.t1 AT1G61970 30.749 374 219 5 23 359 29 399 3.61e-46 163
MS.gene52395.t1 AT1G61970 30.749 374 219 5 23 359 29 399 3.61e-46 163
MS.gene52395.t1 AT1G61970 30.749 374 219 5 23 359 29 399 3.61e-46 163
MS.gene52395.t1 AT1G61970 30.749 374 219 5 23 359 29 399 3.61e-46 163
MS.gene52395.t1 AT1G61970 30.749 374 219 5 23 359 29 399 3.61e-46 163
MS.gene52395.t1 AT1G61970 30.749 374 219 5 23 359 29 399 3.61e-46 163
MS.gene52395.t1 AT1G61990 32.143 364 200 6 49 373 53 408 1.22e-45 162
MS.gene52395.t1 AT1G61990 32.143 364 200 6 49 373 53 408 1.22e-45 162
MS.gene52395.t1 AT1G61980 30.601 366 210 8 49 373 53 415 1.89e-42 153
MS.gene52395.t1 AT1G61980 30.601 366 210 8 49 373 53 415 1.89e-42 153
MS.gene52395.t1 AT1G61980 30.601 366 210 8 49 373 53 415 1.89e-42 153
MS.gene52395.t1 AT1G62120 30.163 368 217 7 32 360 40 406 2.37e-41 151
MS.gene52395.t1 AT3G46950 28.235 425 214 12 13 359 19 430 1.92e-37 140
MS.gene52395.t1 AT1G62150 26.914 405 215 10 49 379 59 456 7.08e-35 134
MS.gene52395.t1 AT1G62010 29.430 316 183 6 81 359 71 383 1.27e-33 129
MS.gene52395.t1 AT1G62085 27.979 386 203 7 49 360 56 440 3.56e-33 129
MS.gene52395.t1 AT1G62085 27.979 386 203 7 49 360 56 440 3.56e-33 129
MS.gene52395.t1 AT1G61960 26.914 405 220 9 49 378 53 456 4.52e-31 123
MS.gene52395.t1 AT1G62110 32.103 271 177 5 27 292 30 298 2.69e-29 118
MS.gene52395.t1 AT5G64950 26.966 356 244 8 33 373 21 375 4.69e-29 116
MS.gene52395.t1 AT5G23930 26.799 403 218 6 29 360 36 432 1.28e-28 116
MS.gene52395.t1 AT1G56380 25.455 385 218 13 45 373 13 384 5.81e-19 88.2
MS.gene52395.t1 AT1G56380 25.455 385 218 13 45 373 24 395 6.67e-19 87.8

Find 78 sgRNAs with CRISPR-Local

Find 99 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAATAAGGTGATGAGATTT+TGG 0.153456 2.3:+54830657 MS.gene52395:CDS
ACAAGAAGCCCTAGAATTCT+TGG 0.255383 2.3:+54830206 MS.gene52395:CDS
AGACTTGAACCAAGAATTCT+AGG 0.272133 2.3:-54830215 None:intergenic
TTCTGATGAGAAACCGAAAT+TGG 0.280006 2.3:-54829961 None:intergenic
TCATATCTCATTACCAATTT+CGG 0.283798 2.3:+54829948 MS.gene52395:CDS
CTTCATTGTAAACATTTCTT+TGG 0.286662 2.3:+54830314 MS.gene52395:CDS
TGATTTCGACATGGCCCTTT+TGG 0.313754 2.3:-54830525 None:intergenic
TTTGGATTTGGTTAAGGAAA+TGG 0.314340 2.3:+54830457 MS.gene52395:CDS
AAAGAGGGGTTTGAAGCTTA+AGG 0.317138 2.3:-54829805 None:intergenic
TTTCGTATAGTTTGGAGAAT+AGG 0.328948 2.3:+54830732 MS.gene52395:CDS
TCAATAACTTTCTCATTAGA+AGG 0.330374 2.3:-54830284 None:intergenic
AAAGAGTAGAAATGAACTTT+GGG 0.332780 2.3:-54829866 None:intergenic
GTATTGTTGTGGTTCGATTT+AGG 0.332858 2.3:-54829833 None:intergenic
ATTGAATTGTCTACTCCATT+TGG 0.352685 2.3:+54830815 MS.gene52395:CDS
TTCGTATAGTTTGGAGAATA+GGG 0.359509 2.3:+54830733 MS.gene52395:CDS
AAGTTGTTGTCTTTAAGAAA+TGG 0.363837 2.3:+54830561 MS.gene52395:CDS
GAATGCTTTGGATTTGGTTA+AGG 0.364407 2.3:+54830451 MS.gene52395:CDS
ATCCACGGAGAAAATTAATA+AGG 0.367860 2.3:+54830643 MS.gene52395:CDS
AGTTGTTGTCTTTAAGAAAT+GGG 0.373623 2.3:+54830562 MS.gene52395:CDS
TTGGATTTGGTTAAGGAAAT+GGG 0.379428 2.3:+54830458 MS.gene52395:CDS
GAAAGAGTAGAAATGAACTT+TGG 0.387896 2.3:-54829867 None:intergenic
TATGAGGAATGCTTTGGATT+TGG 0.391016 2.3:+54830445 MS.gene52395:CDS
AAATGGTTCTTGAAGCGTTT+AGG 0.395855 2.3:+54830597 MS.gene52395:CDS
TTATGATATGAGGAATGCTT+TGG 0.397307 2.3:+54830439 MS.gene52395:CDS
TGAATTGGGTTGGGACTCTT+CGG 0.408178 2.3:+54830685 MS.gene52395:CDS
CTTCTTACCGATTCAAATGT+AGG 0.416369 2.3:-54830254 None:intergenic
TATTATTGACTTATGATATG+AGG 0.419413 2.3:+54830429 MS.gene52395:CDS
TTGGGTCAATGAATTGGGTT+GGG 0.424643 2.3:+54830676 MS.gene52395:CDS
GGGGTCACATTTAAGAATGT+TGG 0.425752 2.3:-54830108 None:intergenic
GTTAATATGTTACTTGATGA+TGG 0.427062 2.3:+54830359 MS.gene52395:CDS
TCAAGCATTGTTAGCCAAAA+GGG 0.433648 2.3:+54830511 MS.gene52395:CDS
GTCAAGCATTGTTAGCCAAA+AGG 0.438054 2.3:+54830510 MS.gene52395:CDS
TTAAATGTGACCCCTACAAA+AGG 0.439736 2.3:+54830117 MS.gene52395:CDS
TGAGATATGAAACTGTGAAC+TGG 0.448214 2.3:-54829935 None:intergenic
AGGAGGAGTGGTTCAAAGAG+AGG 0.463557 2.3:-54829893 None:intergenic
ATGAACTTTGGGGTTGGAAA+GGG 0.467912 2.3:-54829855 None:intergenic
GGGTCACATTTAAGAATGTT+GGG 0.468503 2.3:-54830107 None:intergenic
GGTTTGTTGTGAAGTGGTTG+AGG 0.469829 2.3:-54829913 None:intergenic
ACTCTTCGGCTCTTGTCAAA+AGG 0.469912 2.3:+54830699 MS.gene52395:CDS
TGCTTCAAATATTGATATTG+TGG 0.478150 2.3:+54830175 MS.gene52395:CDS
TCGATTTAGGTTGAGAAAGA+GGG 0.479858 2.3:-54829820 None:intergenic
TTCTTACCGATTCAAATGTA+GGG 0.480837 2.3:-54830253 None:intergenic
TTTGGGTCAATGAATTGGGT+TGG 0.485642 2.3:+54830675 MS.gene52395:CDS
TTCTTGAAGCGTTTAGGAAG+CGG 0.487125 2.3:+54830603 MS.gene52395:CDS
CTACATTTGAATCGGTAAGA+AGG 0.487173 2.3:+54830255 MS.gene52395:CDS
GGCCATGTCGAAATCACGTT+GGG 0.495859 2.3:+54830532 MS.gene52395:CDS
AAAACAGCGATTACTGAGTC+GGG 0.496874 2.3:-54830032 None:intergenic
TTCGATTTAGGTTGAGAAAG+AGG 0.496950 2.3:-54829821 None:intergenic
ATGGGGTTGGTCTGATGAAA+TGG 0.499033 2.3:+54830580 MS.gene52395:CDS
TATAATCCCTACATTTGAAT+CGG 0.504738 2.3:+54830247 MS.gene52395:CDS
GGAGGAGTGGTTCAAAGAGA+GGG 0.505452 2.3:-54829892 None:intergenic
GTAGAAATGAACTTTGGGGT+TGG 0.510973 2.3:-54829861 None:intergenic
GTTGTTGTCTTTAAGAAATG+GGG 0.513781 2.3:+54830563 MS.gene52395:CDS
AATGAACTTTGGGGTTGGAA+AGG 0.516771 2.3:-54829856 None:intergenic
TAAATGTGACCCCTACAAAA+GGG 0.524191 2.3:+54830118 MS.gene52395:CDS
TGCGAAACAACACAAGCCCT+TGG 0.528307 2.3:-54830761 None:intergenic
TTCGGCTCTTGTCAAAAGGC+CGG 0.528513 2.3:+54830703 MS.gene52395:CDS
GAAAACAGCGATTACTGAGT+CGG 0.530805 2.3:-54830033 None:intergenic
TAACTTTCTCATTAGAAGGA+AGG 0.533974 2.3:-54830280 None:intergenic
GGTTGGAAAGGGTATTGTTG+TGG 0.539751 2.3:-54829844 None:intergenic
TGGAGAATAGGGTCATTCCA+AGG 0.540810 2.3:+54830744 MS.gene52395:CDS
AAGCTTAAGGATTTCAACAT+CGG 0.550353 2.3:-54829792 None:intergenic
TTGTTGTGAAGTGGTTGAGG+AGG 0.551983 2.3:-54829910 None:intergenic
CGATTTAGGTTGAGAAAGAG+GGG 0.559408 2.3:-54829819 None:intergenic
TTGTCTTTAAGAAATGGGGT+TGG 0.562623 2.3:+54830567 MS.gene52395:CDS
GTGAAGTGGTTGAGGAGGAG+TGG 0.563267 2.3:-54829905 None:intergenic
ATTGTGTATGTTAGCATCCA+CGG 0.574891 2.3:+54830628 MS.gene52395:CDS
GGAGAATAGGGTCATTCCAA+GGG 0.578298 2.3:+54830745 MS.gene52395:CDS
GACTTGAACCAAGAATTCTA+GGG 0.579810 2.3:-54830214 None:intergenic
GGCTCTTGTCAAAAGGCCGG+AGG 0.586864 2.3:+54830706 MS.gene52395:CDS
GTTTCGCATTTGATCTCCAG+AGG 0.592319 2.3:+54830776 MS.gene52395:CDS
GAACTGGGTTTGTTGTGAAG+TGG 0.592348 2.3:-54829919 None:intergenic
TCATAAGTCAATAATATAGA+CGG 0.618317 2.3:-54830422 None:intergenic
GAGATATGAAACTGTGAACT+GGG 0.635008 2.3:-54829934 None:intergenic
AAGAGTAGAAATGAACTTTG+GGG 0.644547 2.3:-54829865 None:intergenic
GGGCCATGTCGAAATCACGT+TGG 0.650039 2.3:+54830531 MS.gene52395:CDS
ATCCCAACGTGATTTCGACA+TGG 0.666340 2.3:-54830534 None:intergenic
GTGGATGCTAACATACACAA+TGG 0.700210 2.3:-54830626 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGAATTTTTAACTTCAAA+AGG + chr2.3:54830152-54830171 MS.gene52395:CDS 15.0%
!! GAAGTTAAAAATTCAAACTT+TGG - chr2.3:54830149-54830168 None:intergenic 20.0%
!! TCATAAGTCAATAATATAGA+CGG - chr2.3:54830425-54830444 None:intergenic 20.0%
!!! TATTATTGACTTATGATATG+AGG + chr2.3:54830429-54830448 MS.gene52395:CDS 20.0%
! AAAGAGTAGAAATGAACTTT+GGG - chr2.3:54829869-54829888 None:intergenic 25.0%
! AAAGCTATACCTAGAAAAAA+TGG + chr2.3:54830904-54830923 MS.gene52395:CDS 25.0%
! AAGCTATACCTAGAAAAAAT+GGG + chr2.3:54830905-54830924 MS.gene52395:CDS 25.0%
! CTTCATTGTAAACATTTCTT+TGG + chr2.3:54830314-54830333 MS.gene52395:CDS 25.0%
! TATAATCCCTACATTTGAAT+CGG + chr2.3:54830247-54830266 MS.gene52395:CDS 25.0%
! TCAATAACTTTCTCATTAGA+AGG - chr2.3:54830287-54830306 None:intergenic 25.0%
! TCATATCTCATTACCAATTT+CGG + chr2.3:54829948-54829967 MS.gene52395:CDS 25.0%
! TGCTTCAAATATTGATATTG+TGG + chr2.3:54830175-54830194 MS.gene52395:CDS 25.0%
!! AAGTTGTTGTCTTTAAGAAA+TGG + chr2.3:54830561-54830580 MS.gene52395:CDS 25.0%
!! ACATTTTCATTAACACCAAA+TGG - chr2.3:54830833-54830852 None:intergenic 25.0%
!! AGTTGTTGTCTTTAAGAAAT+GGG + chr2.3:54830562-54830581 MS.gene52395:CDS 25.0%
!! GTTAATATGTTACTTGATGA+TGG + chr2.3:54830359-54830378 MS.gene52395:CDS 25.0%
!! TAATAAGGTGATGAGATTTT+GGG + chr2.3:54830658-54830677 MS.gene52395:CDS 25.0%
!! TTAATAAGGTGATGAGATTT+TGG + chr2.3:54830657-54830676 MS.gene52395:CDS 25.0%
AAACTATACGAAAAAACCTC+CGG - chr2.3:54830725-54830744 None:intergenic 30.0%
AAGAGTAGAAATGAACTTTG+GGG - chr2.3:54829868-54829887 None:intergenic 30.0%
ATCCACGGAGAAAATTAATA+AGG + chr2.3:54830643-54830662 MS.gene52395:CDS 30.0%
ATTGAATTGTCTACTCCATT+TGG + chr2.3:54830815-54830834 MS.gene52395:CDS 30.0%
GAAAGAGTAGAAATGAACTT+TGG - chr2.3:54829870-54829889 None:intergenic 30.0%
TAACTTTCTCATTAGAAGGA+AGG - chr2.3:54830283-54830302 None:intergenic 30.0%
TGACAAAAATTCACATTGGT+AGG - chr2.3:54830494-54830513 None:intergenic 30.0%
TGCTTGACAAAAATTCACAT+TGG - chr2.3:54830498-54830517 None:intergenic 30.0%
TTATGATATGAGGAATGCTT+TGG + chr2.3:54830439-54830458 MS.gene52395:CDS 30.0%
TTCGTATAGTTTGGAGAATA+GGG + chr2.3:54830733-54830752 MS.gene52395:CDS 30.0%
TTTCGTATAGTTTGGAGAAT+AGG + chr2.3:54830732-54830751 MS.gene52395:CDS 30.0%
! AAAGTATGTGCAGTGTTTTA+AGG + chr2.3:54830862-54830881 MS.gene52395:CDS 30.0%
! ATTCTTTTCTATCAAACCTC+TGG - chr2.3:54830795-54830814 None:intergenic 30.0%
! GTTGTTGTCTTTAAGAAATG+GGG + chr2.3:54830563-54830582 MS.gene52395:CDS 30.0%
! TTGGATTTGGTTAAGGAAAT+GGG + chr2.3:54830458-54830477 MS.gene52395:CDS 30.0%
! TTTGGATTTGGTTAAGGAAA+TGG + chr2.3:54830457-54830476 MS.gene52395:CDS 30.0%
!! AGATTTTGGGTCAATGAATT+GGG + chr2.3:54830671-54830690 MS.gene52395:CDS 30.0%
!! TTCTTACCGATTCAAATGTA+GGG - chr2.3:54830256-54830275 None:intergenic 30.0%
AGACTTGAACCAAGAATTCT+AGG - chr2.3:54830218-54830237 None:intergenic 35.0%
ATTGTGTATGTTAGCATCCA+CGG + chr2.3:54830628-54830647 MS.gene52395:CDS 35.0%
CTACATTTGAATCGGTAAGA+AGG + chr2.3:54830255-54830274 MS.gene52395:CDS 35.0%
GACTTGAACCAAGAATTCTA+GGG - chr2.3:54830217-54830236 None:intergenic 35.0%
GAGATATGAAACTGTGAACT+GGG - chr2.3:54829937-54829956 None:intergenic 35.0%
GGGTCACATTTAAGAATGTT+GGG - chr2.3:54830110-54830129 None:intergenic 35.0%
GTATTGTTGTGGTTCGATTT+AGG - chr2.3:54829836-54829855 None:intergenic 35.0%
TAAATGTGACCCCTACAAAA+GGG + chr2.3:54830118-54830137 MS.gene52395:CDS 35.0%
TGAGATATGAAACTGTGAAC+TGG - chr2.3:54829938-54829957 None:intergenic 35.0%
TTAAATGTGACCCCTACAAA+AGG + chr2.3:54830117-54830136 MS.gene52395:CDS 35.0%
TTCTGATGAGAAACCGAAAT+TGG - chr2.3:54829964-54829983 None:intergenic 35.0%
! AAATGGTTCTTGAAGCGTTT+AGG + chr2.3:54830597-54830616 MS.gene52395:CDS 35.0%
! CACCTTATTAATTTTCTCCG+TGG - chr2.3:54830648-54830667 None:intergenic 35.0%
! GAATGCTTTGGATTTGGTTA+AGG + chr2.3:54830451-54830470 MS.gene52395:CDS 35.0%
! TATGAGGAATGCTTTGGATT+TGG + chr2.3:54830445-54830464 MS.gene52395:CDS 35.0%
! TCAAGCATTGTTAGCCAAAA+GGG + chr2.3:54830511-54830530 MS.gene52395:CDS 35.0%
! TTGTCTTTAAGAAATGGGGT+TGG + chr2.3:54830567-54830586 MS.gene52395:CDS 35.0%
! TTTGGCAAAACCCTTTTGTA+GGG - chr2.3:54830131-54830150 None:intergenic 35.0%
!! ATCGCTGTTTTCAGAAACTA+CGG + chr2.3:54830044-54830063 MS.gene52395:CDS 35.0%
!! CTTCTTACCGATTCAAATGT+AGG - chr2.3:54830257-54830276 None:intergenic 35.0%
!! GAGATTTTGGGTCAATGAAT+TGG + chr2.3:54830670-54830689 MS.gene52395:CDS 35.0%
!! TCGATTTAGGTTGAGAAAGA+GGG - chr2.3:54829823-54829842 None:intergenic 35.0%
!! TTCGATTTAGGTTGAGAAAG+AGG - chr2.3:54829824-54829843 None:intergenic 35.0%
!!! GGAGGTTTTTTCGTATAGTT+TGG + chr2.3:54830724-54830743 MS.gene52395:CDS 35.0%
AAAACAGCGATTACTGAGTC+GGG - chr2.3:54830035-54830054 None:intergenic 40.0%
ACAAGAAGCCCTAGAATTCT+TGG + chr2.3:54830206-54830225 MS.gene52395:CDS 40.0%
GAAAACAGCGATTACTGAGT+CGG - chr2.3:54830036-54830055 None:intergenic 40.0%
GGGGTCACATTTAAGAATGT+TGG - chr2.3:54830111-54830130 None:intergenic 40.0%
GTGGATGCTAACATACACAA+TGG - chr2.3:54830629-54830648 None:intergenic 40.0%
TTGGGTCAATGAATTGGGTT+GGG + chr2.3:54830676-54830695 MS.gene52395:CDS 40.0%
TTTGGGTCAATGAATTGGGT+TGG + chr2.3:54830675-54830694 MS.gene52395:CDS 40.0%
! AAAGAGGGGTTTGAAGCTTA+AGG - chr2.3:54829808-54829827 None:intergenic 40.0%
! CTTTGGCAAAACCCTTTTGT+AGG - chr2.3:54830132-54830151 None:intergenic 40.0%
! GATTACTGAGTCGGGTTTTT+GGG - chr2.3:54830027-54830046 None:intergenic 40.0%
! GTCAAGCATTGTTAGCCAAA+AGG + chr2.3:54830510-54830529 MS.gene52395:CDS 40.0%
! TTCTTGAAGCGTTTAGGAAG+CGG + chr2.3:54830603-54830622 MS.gene52395:CDS 40.0%
! TTGGCAAAACCCTTTTGTAG+GGG - chr2.3:54830130-54830149 None:intergenic 40.0%
!! AATGAACTTTGGGGTTGGAA+AGG - chr2.3:54829859-54829878 None:intergenic 40.0%
!! ATGAACTTTGGGGTTGGAAA+GGG - chr2.3:54829858-54829877 None:intergenic 40.0%
!! CGATTTAGGTTGAGAAAGAG+GGG - chr2.3:54829822-54829841 None:intergenic 40.0%
!! GTAGAAATGAACTTTGGGGT+TGG - chr2.3:54829864-54829883 None:intergenic 40.0%
!!! GTATGTGCAGTGTTTTAAGG+AGG + chr2.3:54830865-54830884 MS.gene52395:CDS 40.0%
ACTCTTCGGCTCTTGTCAAA+AGG + chr2.3:54830699-54830718 MS.gene52395:CDS 45.0%
ATCCCAACGTGATTTCGACA+TGG - chr2.3:54830537-54830556 None:intergenic 45.0%
GGAGAATAGGGTCATTCCAA+GGG + chr2.3:54830745-54830764 MS.gene52395:CDS 45.0%
GTTTCGCATTTGATCTCCAG+AGG + chr2.3:54830776-54830795 MS.gene52395:CDS 45.0%
TGGAGAATAGGGTCATTCCA+AGG + chr2.3:54830744-54830763 MS.gene52395:CDS 45.0%
TTGTTGTGAAGTGGTTGAGG+AGG - chr2.3:54829913-54829932 None:intergenic 45.0%
! CGATTACTGAGTCGGGTTTT+TGG - chr2.3:54830028-54830047 None:intergenic 45.0%
! TGATTTCGACATGGCCCTTT+TGG - chr2.3:54830528-54830547 None:intergenic 45.0%
!! ATGGGGTTGGTCTGATGAAA+TGG + chr2.3:54830580-54830599 MS.gene52395:CDS 45.0%
!! GAACTGGGTTTGTTGTGAAG+TGG - chr2.3:54829922-54829941 None:intergenic 45.0%
!! GGTTGGAAAGGGTATTGTTG+TGG - chr2.3:54829847-54829866 None:intergenic 45.0%
!! GGTTTGTTGTGAAGTGGTTG+AGG - chr2.3:54829916-54829935 None:intergenic 45.0%
!! TGAATTGGGTTGGGACTCTT+CGG + chr2.3:54830685-54830704 MS.gene52395:CDS 45.0%
AGGAGGAGTGGTTCAAAGAG+AGG - chr2.3:54829896-54829915 None:intergenic 50.0%
GGAGGAGTGGTTCAAAGAGA+GGG - chr2.3:54829895-54829914 None:intergenic 50.0%
GGCCATGTCGAAATCACGTT+GGG + chr2.3:54830532-54830551 MS.gene52395:CDS 50.0%
TGCGAAACAACACAAGCCCT+TGG - chr2.3:54830764-54830783 None:intergenic 50.0%
TTCGGCTCTTGTCAAAAGGC+CGG + chr2.3:54830703-54830722 MS.gene52395:CDS 50.0%
GGGCCATGTCGAAATCACGT+TGG + chr2.3:54830531-54830550 MS.gene52395:CDS 55.0%
GTGAAGTGGTTGAGGAGGAG+TGG - chr2.3:54829908-54829927 None:intergenic 55.0%
GGCTCTTGTCAAAAGGCCGG+AGG + chr2.3:54830706-54830725 MS.gene52395:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 54829795 54830934 54829795 ID=MS.gene52395
chr2.3 mRNA 54829795 54830934 54829795 ID=MS.gene52395.t1;Parent=MS.gene52395
chr2.3 exon 54829795 54830934 54829795 ID=MS.gene52395.t1.exon1;Parent=MS.gene52395.t1
chr2.3 CDS 54829795 54830934 54829795 ID=cds.MS.gene52395.t1;Parent=MS.gene52395.t1
Gene Sequence

>MS.gene52395

ATGTTGAAATCCTTAAGCTTCAAACCCCTCTTTCTCAACCTAAATCGAACCACAACAATACCCTTTCCAACCCCAAAGTTCATTTCTACTCTTTCAACCCTCTCTTTGAACCACTCCTCCTCAACCACTTCACAACAAACCCAGTTCACAGTTTCATATCTCATTACCAATTTCGGTTTCTCATCAGAAACAGCTTCAAAAGCTTCAAAACTAGTTCAATTCGACACTTCCCAAAAACCCGACTCAGTAATCGCTGTTTTCAGAAACTACGGTTTCTCTGATTCTCAGATAAAAAACATCATTAGACAAGCACCCAACATTCTTAAATGTGACCCCTACAAAAGGGTTTTGCCAAAGTTTGAATTTTTAACTTCAAAAGGTGCTTCAAATATTGATATTGTGGAAATAGTTACAAGAAGCCCTAGAATTCTTGGTTCAAGTCTTGAGAATAGTATAATCCCTACATTTGAATCGGTAAGAAGGTTCCTTCCTTCTAATGAGAAAGTTATTGAACGTATACTTCATTGTAAACATTTCTTTGGTCATTTTCATTTTATTAGAAATGTTAATATGTTACTTGATGATGGAGTCATTCACTCAAATATCACTTTTTTATTGCTTAGAAGACCGTCTATATTATTGACTTATGATATGAGGAATGCTTTGGATTTGGTTAAGGAAATGGGTTTTGATGATCCTACCAATGTGAATTTTTGTCAAGCATTGTTAGCCAAAAGGGCCATGTCGAAATCACGTTGGGATGCGAAAGTTGTTGTCTTTAAGAAATGGGGTTGGTCTGATGAAATGGTTCTTGAAGCGTTTAGGAAGCGGCCATTGTGTATGTTAGCATCCACGGAGAAAATTAATAAGGTGATGAGATTTTGGGTCAATGAATTGGGTTGGGACTCTTCGGCTCTTGTCAAAAGGCCGGAGGTTTTTTCGTATAGTTTGGAGAATAGGGTCATTCCAAGGGCTTGTGTTGTTTCGCATTTGATCTCCAGAGGTTTGATAGAAAAGAATATTGAATTGTCTACTCCATTTGGTGTTAATGAAAATGTGTTTCTTGAAAAGTATGTGCAGTGTTTTAAGGAGGAAAGAGATGATTTGTTAAAGCTATACCTAGAAAAAATGGGTGTCTGA
Protein sequence

>MS.gene52395.t1

MLKSLSFKPLFLNLNRTTTIPFPTPKFISTLSTLSLNHSSSTTSQQTQFTVSYLITNFGFSSETASKASKLVQFDTSQKPDSVIAVFRNYGFSDSQIKNIIRQAPNILKCDPYKRVLPKFEFLTSKGASNIDIVEIVTRSPRILGSSLENSIIPTFESVRRFLPSNEKVIERILHCKHFFGHFHFIRNVNMLLDDGVIHSNITFLLLRRPSILLTYDMRNALDLVKEMGFDDPTNVNFCQALLAKRAMSKSRWDAKVVVFKKWGWSDEMVLEAFRKRPLCMLASTEKINKVMRFWVNELGWDSSALVKRPEVFSYSLENRVIPRACVVSHLISRGLIEKNIELSTPFGVNENVFLEKYVQCFKEERDDLLKLYLEKMGV