AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene004590

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene004590.t1 MTR_2g437180 90.050 402 34 1 1 402 1 396 0.0 724
MS.gene004590.t1 MTR_2g437150 71.429 406 112 2 1 402 1 406 0.0 573
MS.gene004590.t1 MTR_2g437170 71.891 402 109 2 1 398 1 402 0.0 570
MS.gene004590.t1 MTR_2g437120 70.647 402 111 3 1 400 1 397 0.0 551
MS.gene004590.t1 MTR_2g437960 73.000 400 104 2 1 398 1 398 0.0 544
MS.gene004590.t1 MTR_2g437960 73.000 400 104 2 1 398 1 398 0.0 543
MS.gene004590.t1 MTR_2g437160 67.574 404 125 3 1 402 12 411 0.0 533
MS.gene004590.t1 MTR_2g437990 68.069 404 119 4 1 401 1 397 0.0 525
MS.gene004590.t1 MTR_2g076320 65.757 403 131 2 1 401 1 398 0.0 509
MS.gene004590.t1 MTR_2g437100 69.289 394 108 4 1 386 7 395 1.39e-178 503
MS.gene004590.t1 MTR_2g438010 64.020 403 138 2 1 401 21 418 3.63e-178 503
MS.gene004590.t1 MTR_2g437940 65.500 400 102 3 1 398 1 366 1.40e-176 497
MS.gene004590.t1 MTR_2g437240 60.500 400 113 4 36 398 19 410 2.49e-157 450
MS.gene004590.t1 MTR_2g438020 59.530 383 115 4 56 401 72 451 1.48e-147 428
MS.gene004590.t1 MTR_2g437200 59.424 382 114 4 42 386 21 398 2.97e-147 423
MS.gene004590.t1 MTR_2g437130 58.400 375 143 5 31 401 21 386 2.91e-142 410
MS.gene004590.t1 MTR_2g437080 52.162 370 167 5 31 398 21 382 7.53e-124 363
MS.gene004590.t1 MTR_2g437020 53.209 374 159 7 29 394 13 378 2.16e-121 357
MS.gene004590.t1 MTR_2g436440 49.211 380 183 4 21 398 17 388 2.14e-118 350
MS.gene004590.t1 MTR_2g437060 49.866 373 174 5 27 394 29 393 3.98e-116 344
MS.gene004590.t1 MTR_2g437260 48.596 356 172 6 42 393 25 373 1.00e-111 333
MS.gene004590.t1 MTR_2g437040 49.459 370 177 4 31 398 21 382 2.13e-111 332
MS.gene004590.t1 MTR_2g437030 46.787 389 192 5 12 398 93 468 9.58e-110 330
MS.gene004590.t1 MTR_2g436400 48.641 368 172 6 25 386 21 377 6.52e-109 325
MS.gene004590.t1 MTR_2g436460 50.432 347 160 6 44 387 40 377 6.53e-104 312
MS.gene004590.t1 MTR_4g119550 46.610 354 175 5 44 394 46 388 5.09e-102 308
MS.gene004590.t1 MTR_4g120380 44.706 340 179 4 46 383 37 369 3.86e-90 277
MS.gene004590.t1 MTR_4g120380 44.311 334 178 4 46 378 37 363 1.01e-85 267
MS.gene004590.t1 MTR_4g119580 43.149 343 186 4 43 383 34 369 2.73e-85 265
MS.gene004590.t1 MTR_2g437160 68.085 188 58 1 217 402 133 320 3.57e-84 259
MS.gene004590.t1 MTR_2g437160 61.481 135 49 1 1 135 12 143 3.19e-44 156
MS.gene004590.t1 MTR_2g019810 42.183 339 175 8 57 386 33 359 1.59e-71 229
MS.gene004590.t1 MTR_4g049400 72.258 155 38 1 1 155 1 150 1.69e-69 219
MS.gene004590.t1 MTR_2g019840 40.227 353 197 8 38 386 29 371 1.60e-68 221
MS.gene004590.t1 MTR_2g437090 53.659 164 74 1 231 392 1 164 7.79e-56 182
MS.gene004590.t1 MTR_3g450500 30.631 333 222 5 57 383 40 369 3.23e-48 168
MS.gene004590.t1 MTR_4g119570 38.000 250 117 3 135 382 14 227 1.31e-46 160
MS.gene004590.t1 MTR_4g007490 28.775 351 240 6 38 383 22 367 9.79e-40 145
MS.gene004590.t1 MTR_2g436370 43.030 165 87 3 43 207 38 195 9.33e-34 125
MS.gene004590.t1 MTR_8g080990 31.773 299 194 5 88 380 74 368 3.79e-30 120
MS.gene004590.t1 MTR_8g081000 28.146 302 211 3 86 383 85 384 2.68e-28 115
MS.gene004590.t1 MTR_8g081000 28.146 302 211 3 86 383 85 384 3.21e-28 115
MS.gene004590.t1 MTR_8g081000 28.146 302 211 3 86 383 85 384 3.88e-28 114
MS.gene004590.t1 MTR_3g085240 52.174 92 25 2 288 377 174 248 1.21e-19 88.2
MS.gene004590.t1 MTR_3g085240 39.634 164 76 6 20 182 34 175 2.13e-17 81.6
MS.gene004590.t1 MTR_2g436380 40.404 99 56 2 231 329 1 96 1.21e-14 74.3
MS.gene004590.t1 MTR_2g437680 78.788 33 7 0 237 269 2 34 5.37e-12 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene004590.t1 AT5G07900 31.025 361 240 7 30 384 43 400 6.86e-53 181
MS.gene004590.t1 AT1G21150 31.902 326 213 4 57 377 57 378 4.61e-47 166
MS.gene004590.t1 AT1G21150 31.437 334 220 4 49 377 13 342 1.33e-46 163
MS.gene004590.t1 AT1G21150 31.902 326 213 4 57 377 121 442 2.93e-46 165
MS.gene004590.t1 AT1G61970 27.119 354 212 9 57 371 53 399 6.62e-30 120
MS.gene004590.t1 AT1G61970 27.119 354 212 9 57 371 53 399 6.62e-30 120
MS.gene004590.t1 AT1G61970 27.119 354 212 9 57 371 53 399 6.62e-30 120
MS.gene004590.t1 AT1G61970 27.119 354 212 9 57 371 53 399 6.62e-30 120
MS.gene004590.t1 AT1G61970 27.119 354 212 9 57 371 53 399 6.62e-30 120
MS.gene004590.t1 AT1G61970 27.119 354 212 9 57 371 53 399 6.62e-30 120
MS.gene004590.t1 AT1G61970 27.119 354 212 9 57 371 53 399 6.62e-30 120
MS.gene004590.t1 AT1G61990 27.247 356 208 7 57 373 53 396 1.90e-29 118
MS.gene004590.t1 AT1G61990 27.247 356 208 7 57 373 53 396 1.90e-29 118
MS.gene004590.t1 AT1G61980 25.824 364 220 8 57 379 53 407 6.91e-29 117
MS.gene004590.t1 AT1G61980 25.824 364 220 8 57 379 53 407 6.91e-29 117
MS.gene004590.t1 AT1G61980 25.824 364 220 8 57 379 53 407 6.91e-29 117
MS.gene004590.t1 AT5G64950 26.050 357 250 6 38 383 22 375 2.94e-26 109
MS.gene004590.t1 AT1G62120 25.683 366 221 7 57 386 57 407 1.67e-25 107
MS.gene004590.t1 AT3G46950 28.358 268 181 5 35 300 30 288 2.94e-25 107
MS.gene004590.t1 AT1G62150 23.058 399 230 10 57 382 59 453 1.24e-21 96.7
MS.gene004590.t1 AT1G62010 25.150 334 197 6 89 386 69 385 1.13e-20 93.6
MS.gene004590.t1 AT1G61960 28.455 246 171 4 57 301 53 294 2.30e-20 93.2
MS.gene004590.t1 AT1G62085 22.680 388 223 11 57 371 56 439 9.96e-19 88.2
MS.gene004590.t1 AT1G62085 22.680 388 223 11 57 371 56 439 9.96e-19 88.2
MS.gene004590.t1 AT1G62110 24.444 360 244 9 34 381 30 373 6.54e-18 85.9
MS.gene004590.t1 AT5G23930 22.642 424 243 8 27 375 22 435 2.52e-16 80.9
MS.gene004590.t1 AT1G56380 23.869 398 222 15 55 395 26 399 2.35e-14 74.7
MS.gene004590.t1 AT1G56380 24.121 398 221 15 55 395 15 388 2.98e-14 74.3

Find 68 sgRNAs with CRISPR-Local

Find 91 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGAGCAAGTTTGTCTTTA+AGG 0.043675 2.2:-52113140 MS.gene004590:CDS
ATCAATTTGATGACTGATTT+TGG 0.089088 2.2:-52113634 MS.gene004590:CDS
AAAAGAGGGTTGTTGAATTT+TGG 0.120653 2.2:+52114171 None:intergenic
CTGAAAAGGCCATCTATATT+TGG 0.156515 2.2:-52113580 MS.gene004590:CDS
AAGAAATTGATAACTGAATT+AGG 0.176367 2.2:+52113970 None:intergenic
ATTGAAGCCAACATCAAATT+AGG 0.226734 2.2:+52113370 None:intergenic
GAGAATCTTGTGAGTGAAAA+TGG 0.247387 2.2:+52114129 None:intergenic
GATCCTTCAATGGCTACTTT+TGG 0.277843 2.2:-52113508 MS.gene004590:CDS
TTGGAAGAAGTTCATGGTTT+AGG 0.289669 2.2:-52113535 MS.gene004590:CDS
TGGCATGCAATTCACTAATT+AGG 0.292905 2.2:-52113050 None:intergenic
GAAAATGGGAATGAGAAGTT+TGG 0.301232 2.2:+52114144 None:intergenic
TGATGGCTAAAGCAACATTC+TGG 0.327907 2.2:+52114214 None:intergenic
CCAATTGGGTTGGGATTCCT+TGG 0.333577 2.2:-52113311 MS.gene004590:CDS
TCCAAACCATGTTGAAGAAA+TGG 0.334748 2.2:-52114245 None:intergenic
AACTGATTTGATTAAGTCAT+TGG 0.339262 2.2:-52113554 MS.gene004590:CDS
GCAAAGAATGATATCCTTGT+TGG 0.359776 2.2:+52113714 None:intergenic
TTGTTCTCCTTTGTGTATGC+AGG 0.375653 2.2:+52113073 None:intergenic
ACTAAATGTCCACATATGTT+TGG 0.382004 2.2:-52113283 MS.gene004590:CDS
CAAAGCTTTCAACAACAATC+AGG 0.385654 2.2:-52114016 MS.gene004590:CDS
ATCAGATGAAGTAGCACCTT+TGG 0.385922 2.2:+52113834 None:intergenic
GAGAAGTTTGGGTTCAAAAG+AGG 0.413500 2.2:+52114156 None:intergenic
TTGGGTCAACCAATTGGGTT+GGG 0.418889 2.2:-52113320 MS.gene004590:CDS
CTTGGGCAAAATTATATTGT+GGG 0.422253 2.2:+52113873 None:intergenic
AAAATGGGAATGAGAAGTTT+GGG 0.423820 2.2:+52114145 None:intergenic
ATTAGCCACAACAAGGTGAT+AGG 0.433161 2.2:+52113657 None:intergenic
AAGTCATTGGAAGAAGTTCA+TGG 0.433750 2.2:-52113541 MS.gene004590:CDS
TTTCTAGATTGCTTCTGAAA+AGG 0.437099 2.2:-52113594 MS.gene004590:CDS
TCAGTTGAACCAAATATAGA+TGG 0.441181 2.2:+52113571 None:intergenic
CCAAGGAATCCCAACCCAAT+TGG 0.447231 2.2:+52113311 None:intergenic
TTTAGGATTTGATCCTTCAA+TGG 0.450730 2.2:-52113518 MS.gene004590:CDS
TCTAATGATGATTCGTATGT+CGG 0.457132 2.2:+52113924 None:intergenic
GTTGCATCCTAATTTGATGT+TGG 0.466173 2.2:-52113377 MS.gene004590:CDS
TCGCAAAATTCGAGGGTTTG+CGG 0.479537 2.2:+52113795 None:intergenic
AGAAGTTTGGGTTCAAAAGA+GGG 0.481605 2.2:+52114157 None:intergenic
GATGGCTAAAGCAACATTCT+GGG 0.487797 2.2:+52114215 None:intergenic
TTTGGGTCAACCAATTGGGT+TGG 0.496217 2.2:-52113321 MS.gene004590:CDS
AAGCTACTTCGCAAAATTCG+AGG 0.497556 2.2:+52113787 None:intergenic
TCCCCAAAAGTAGCCATTGA+AGG 0.500530 2.2:+52113505 None:intergenic
ACTTGGGCAAAATTATATTG+TGG 0.500709 2.2:+52113872 None:intergenic
TTGGTTATAGTTTACATCAA+AGG 0.507419 2.2:-52113264 MS.gene004590:CDS
TAATTCCTATCACCTTGTTG+TGG 0.508203 2.2:-52113662 MS.gene004590:CDS
AAAGCTTTGAGAGCAGATTG+AGG 0.511231 2.2:+52114030 None:intergenic
AATTTCTCAGAATGAGCAAA+TGG 0.512809 2.2:+52113166 None:intergenic
AATTGCAAAACTGAGGCCCT+TGG 0.520839 2.2:+52113235 None:intergenic
AGAATCTTGTGAGTGAAAAT+GGG 0.534017 2.2:+52114130 None:intergenic
AAACTATAACCAAACATATG+TGG 0.543018 2.2:+52113274 None:intergenic
TTCTGACTCTGATGTTGTGG+TGG 0.553341 2.2:+52114107 None:intergenic
TGATTCTGACTCTGATGTTG+TGG 0.556453 2.2:+52114104 None:intergenic
TTATCTATTAAAGCTATATG+TGG 0.557272 2.2:-52113107 MS.gene004590:CDS
TACATCAAAGGATCATTCCA+AGG 0.557901 2.2:-52113252 MS.gene004590:CDS
TGAAATCAAAATTGTTGATG+AGG 0.559601 2.2:+52114055 None:intergenic
AGCTACTTCGCAAAATTCGA+GGG 0.561434 2.2:+52113788 None:intergenic
ATGAGGTACGATACAGCAAA+TGG 0.565479 2.2:+52114072 None:intergenic
TTGGGCAAAATTATATTGTG+GGG 0.586920 2.2:+52113874 None:intergenic
AAGAAACCATTTCTTCAACA+TGG 0.592220 2.2:+52114239 None:intergenic
TGGACATTTAGTAAGTTCCA+AGG 0.592713 2.2:+52113294 None:intergenic
GAGCAAGTTTGTCTTTAAGG+AGG 0.592819 2.2:-52113137 MS.gene004590:CDS
ATGTATGAGTAAAACACGGT+GGG 0.613074 2.2:-52113464 MS.gene004590:CDS
ACATCAAAGGATCATTCCAA+GGG 0.634178 2.2:-52113251 MS.gene004590:CDS
CAAAAGAAATTGCAAAACTG+AGG 0.646915 2.2:+52113228 None:intergenic
AATTGATATTAGCCACAACA+AGG 0.659212 2.2:+52113650 None:intergenic
AATGAAACCTGCATACACAA+AGG 0.664808 2.2:-52113080 MS.gene004590:CDS
GGTTGTAATGAAAGTAACCA+TGG 0.672923 2.2:+52113895 None:intergenic
TCATCATTAGAAAAGCGCCA+TGG 0.688476 2.2:-52113912 MS.gene004590:CDS
AGGTACGATACAGCAAATGG+TGG 0.691130 2.2:+52114075 None:intergenic
GCATACACAAAGGAGAACAA+TGG 0.692068 2.2:-52113070 MS.gene004590:CDS
AATGTATGAGTAAAACACGG+TGG 0.729131 2.2:-52113465 MS.gene004590:CDS
AGAAATGTATGAGTAAAACA+CGG 0.759128 2.2:-52113468 MS.gene004590:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATAGAAAAAATTCAAACTT+GGG + chr2.2:52113435-52113454 None:intergenic 20.0%
!! TTATCTATTAAAGCTATATG+TGG - chr2.2:52114181-52114200 MS.gene004590:CDS 20.0%
!!! AAGAAATTGATAACTGAATT+AGG + chr2.2:52113321-52113340 None:intergenic 20.0%
!!! AAGTTGATGTTTTTAAGAAA+TGG - chr2.2:52113853-52113872 MS.gene004590:CDS 20.0%
!!! AGTTGATGTTTTTAAGAAAT+GGG - chr2.2:52113854-52113873 MS.gene004590:CDS 20.0%
!!! TAATTTTGTGATGCATTTTT+GGG - chr2.2:52113950-52113969 MS.gene004590:CDS 20.0%
!!! TTAATTTTGTGATGCATTTT+TGG - chr2.2:52113949-52113968 MS.gene004590:CDS 20.0%
!!! TTTGAATTTTTTCTATCCAA+AGG - chr2.2:52113438-52113457 MS.gene004590:CDS 20.0%
! AAACTATAACCAAACATATG+TGG + chr2.2:52114017-52114036 None:intergenic 25.0%
! AGAAATGTATGAGTAAAACA+CGG - chr2.2:52113820-52113839 MS.gene004590:CDS 25.0%
! GGATAGAAAAAATTCAAACT+TGG + chr2.2:52113436-52113455 None:intergenic 25.0%
! TACTGAACAATTGAAAAAGA+GGG + chr2.2:52113542-52113561 None:intergenic 25.0%
! TGAAATCAAAATTGTTGATG+AGG + chr2.2:52113236-52113255 None:intergenic 25.0%
! TTGGTTATAGTTTACATCAA+AGG - chr2.2:52114024-52114043 MS.gene004590:CDS 25.0%
!! TGTTTTACTCATACATTTCT+TGG + chr2.2:52113820-52113839 None:intergenic 25.0%
!! TTGCAATTTCTTTTGATGAA+AGG - chr2.2:52114068-52114087 MS.gene004590:CDS 25.0%
!!! AACTGATTTGATTAAGTCAT+TGG - chr2.2:52113734-52113753 MS.gene004590:CDS 25.0%
!!! AAGCTTTTTTTCAAGCATTT+AGG - chr2.2:52113889-52113908 MS.gene004590:CDS 25.0%
!!! ATCAATTTGATGACTGATTT+TGG - chr2.2:52113654-52113673 MS.gene004590:CDS 25.0%
!!! GTTGATGTTTTTAAGAAATG+GGG - chr2.2:52113855-52113874 MS.gene004590:CDS 25.0%
AAAATGGGAATGAGAAGTTT+GGG + chr2.2:52113146-52113165 None:intergenic 30.0%
AATTGATATTAGCCACAACA+AGG + chr2.2:52113641-52113660 None:intergenic 30.0%
AATTTCTCAGAATGAGCAAA+TGG + chr2.2:52114125-52114144 None:intergenic 30.0%
ACTAAATGTCCACATATGTT+TGG - chr2.2:52114005-52114024 MS.gene004590:CDS 30.0%
ACTTGGGCAAAATTATATTG+TGG + chr2.2:52113419-52113438 None:intergenic 30.0%
AGAATCTTGTGAGTGAAAAT+GGG + chr2.2:52113161-52113180 None:intergenic 30.0%
ATTGAAGCCAACATCAAATT+AGG + chr2.2:52113921-52113940 None:intergenic 30.0%
CAAAAGAAATTGCAAAACTG+AGG + chr2.2:52114063-52114082 None:intergenic 30.0%
CTACTGAACAATTGAAAAAG+AGG + chr2.2:52113543-52113562 None:intergenic 30.0%
CTTGGGCAAAATTATATTGT+GGG + chr2.2:52113418-52113437 None:intergenic 30.0%
TCAGTTGAACCAAATATAGA+TGG + chr2.2:52113720-52113739 None:intergenic 30.0%
TCTAATGATGATTCGTATGT+CGG + chr2.2:52113367-52113386 None:intergenic 30.0%
TTGGGCAAAATTATATTGTG+GGG + chr2.2:52113417-52113436 None:intergenic 30.0%
! AAAAGAGGGTTGTTGAATTT+TGG + chr2.2:52113120-52113139 None:intergenic 30.0%
! AAAGAGGGTTGTTGAATTTT+GGG + chr2.2:52113119-52113138 None:intergenic 30.0%
! TTTAGGATTTGATCCTTCAA+TGG - chr2.2:52113770-52113789 MS.gene004590:CDS 30.0%
! TTTCTAGATTGCTTCTGAAA+AGG - chr2.2:52113694-52113713 MS.gene004590:CDS 30.0%
!! ATGTTTTTAAGAAATGGGGT+TGG - chr2.2:52113859-52113878 MS.gene004590:CDS 30.0%
!! TAGGTTTTTGAAAACCAACA+AGG - chr2.2:52113560-52113579 MS.gene004590:CDS 30.0%
!!! CTCTTTTTCAATTGTTCAGT+AGG - chr2.2:52113541-52113560 MS.gene004590:CDS 30.0%
AAGTCATTGGAAGAAGTTCA+TGG - chr2.2:52113747-52113766 MS.gene004590:CDS 35.0%
AATGAAACCTGCATACACAA+AGG - chr2.2:52114208-52114227 MS.gene004590:CDS 35.0%
AATGTATGAGTAAAACACGG+TGG - chr2.2:52113823-52113842 MS.gene004590:CDS 35.0%
ACATCAAAGGATCATTCCAA+GGG - chr2.2:52114037-52114056 MS.gene004590:CDS 35.0%
ATGTATGAGTAAAACACGGT+GGG - chr2.2:52113824-52113843 MS.gene004590:CDS 35.0%
CAAAGCTTTCAACAACAATC+AGG - chr2.2:52113272-52113291 MS.gene004590:CDS 35.0%
CTGAAAAGGCCATCTATATT+TGG - chr2.2:52113708-52113727 MS.gene004590:CDS 35.0%
CTTGAGCAAGTTTGTCTTTA+AGG - chr2.2:52114148-52114167 MS.gene004590:CDS 35.0%
GAAAATGGGAATGAGAAGTT+TGG + chr2.2:52113147-52113166 None:intergenic 35.0%
GAGAATCTTGTGAGTGAAAA+TGG + chr2.2:52113162-52113181 None:intergenic 35.0%
GCAAAGAATGATATCCTTGT+TGG + chr2.2:52113577-52113596 None:intergenic 35.0%
GGTTGTAATGAAAGTAACCA+TGG + chr2.2:52113396-52113415 None:intergenic 35.0%
GTTGCATCCTAATTTGATGT+TGG - chr2.2:52113911-52113930 MS.gene004590:CDS 35.0%
TAATTCCTATCACCTTGTTG+TGG - chr2.2:52113626-52113645 MS.gene004590:CDS 35.0%
TACATCAAAGGATCATTCCA+AGG - chr2.2:52114036-52114055 MS.gene004590:CDS 35.0%
TGGACATTTAGTAAGTTCCA+AGG + chr2.2:52113997-52114016 None:intergenic 35.0%
TTGGAAGAAGTTCATGGTTT+AGG - chr2.2:52113753-52113772 MS.gene004590:CDS 35.0%
! AAGAGGGTTGTTGAATTTTG+GGG + chr2.2:52113118-52113137 None:intergenic 35.0%
! AGAAGTTTGGGTTCAAAAGA+GGG + chr2.2:52113134-52113153 None:intergenic 35.0%
!!! ATCCTTCAATGGCTACTTTT+GGG - chr2.2:52113781-52113800 MS.gene004590:CDS 35.0%
!!! CATTTTTGGGTCAACCAATT+GGG - chr2.2:52113963-52113982 MS.gene004590:CDS 35.0%
!!! TGTTGATTTTGTGGTGATGA+TGG + chr2.2:52113094-52113113 None:intergenic 35.0%
!!! TTTTGGGGTTGTTGATTTTG+TGG + chr2.2:52113103-52113122 None:intergenic 35.0%
AAGCTACTTCGCAAAATTCG+AGG + chr2.2:52113504-52113523 None:intergenic 40.0%
AGCTACTTCGCAAAATTCGA+GGG + chr2.2:52113503-52113522 None:intergenic 40.0%
ATCAGATGAAGTAGCACCTT+TGG + chr2.2:52113457-52113476 None:intergenic 40.0%
ATGAGGTACGATACAGCAAA+TGG + chr2.2:52113219-52113238 None:intergenic 40.0%
ATTAGCCACAACAAGGTGAT+AGG + chr2.2:52113634-52113653 None:intergenic 40.0%
GATGGCTAAAGCAACATTCT+GGG + chr2.2:52113076-52113095 None:intergenic 40.0%
GCATACACAAAGGAGAACAA+TGG - chr2.2:52114218-52114237 MS.gene004590:CDS 40.0%
TGATGGCTAAAGCAACATTC+TGG + chr2.2:52113077-52113096 None:intergenic 40.0%
TGATTCTGACTCTGATGTTG+TGG + chr2.2:52113187-52113206 None:intergenic 40.0%
TGTCGGAGTGTGAAAAATCA+CGG + chr2.2:52113350-52113369 None:intergenic 40.0%
TTGTTCTCCTTTGTGTATGC+AGG + chr2.2:52114218-52114237 None:intergenic 40.0%
! GAGAAGTTTGGGTTCAAAAG+AGG + chr2.2:52113135-52113154 None:intergenic 40.0%
! GAGCAAGTTTGTCTTTAAGG+AGG - chr2.2:52114151-52114170 MS.gene004590:CDS 40.0%
! TCGAATTTTGCGAAGTAGCT+TGG - chr2.2:52113503-52113522 MS.gene004590:CDS 40.0%
!! AAAGCTTTGAGAGCAGATTG+AGG + chr2.2:52113261-52113280 None:intergenic 40.0%
!! GATCCTTCAATGGCTACTTT+TGG - chr2.2:52113780-52113799 MS.gene004590:CDS 40.0%
!! TCATCATTAGAAAAGCGCCA+TGG - chr2.2:52113376-52113395 MS.gene004590:CDS 40.0%
!!! GCATTTTTGGGTCAACCAAT+TGG - chr2.2:52113962-52113981 MS.gene004590:CDS 40.0%
!!! TCCTTCAATGGCTACTTTTG+GGG - chr2.2:52113782-52113801 MS.gene004590:CDS 40.0%
AATTGCAAAACTGAGGCCCT+TGG + chr2.2:52114056-52114075 None:intergenic 45.0%
AGGTACGATACAGCAAATGG+TGG + chr2.2:52113216-52113235 None:intergenic 45.0%
TCCCCAAAAGTAGCCATTGA+AGG + chr2.2:52113786-52113805 None:intergenic 45.0%
TCGCAAAATTCGAGGGTTTG+CGG + chr2.2:52113496-52113515 None:intergenic 45.0%
TTCTGACTCTGATGTTGTGG+TGG + chr2.2:52113184-52113203 None:intergenic 45.0%
TTGGGTCAACCAATTGGGTT+GGG - chr2.2:52113968-52113987 MS.gene004590:CDS 45.0%
TTTGGGTCAACCAATTGGGT+TGG - chr2.2:52113967-52113986 MS.gene004590:CDS 45.0%
CCAAGGAATCCCAACCCAAT+TGG + chr2.2:52113980-52113999 None:intergenic 50.0%
!! CCAATTGGGTTGGGATTCCT+TGG - chr2.2:52113977-52113996 MS.gene004590:CDS 50.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 52113051 52114259 52113051 ID=MS.gene004590
chr2.2 mRNA 52113051 52114259 52113051 ID=MS.gene004590.t1;Parent=MS.gene004590
chr2.2 exon 52113051 52114259 52113051 ID=MS.gene004590.t1.exon1;Parent=MS.gene004590.t1
chr2.2 CDS 52113051 52114259 52113051 ID=cds.MS.gene004590.t1;Parent=MS.gene004590.t1
Gene Sequence

>MS.gene004590

ATGTTGAAGAAATGGTTTCTTTCCCAGAATGTTGCTTTAGCCATCATCACCACAAAATCAACAACCCCAAAATTCAACAACCCTCTTTTGAACCCAAACTTCTCATTCCCATTTTCACTCACAAGATTCTCCACCACAACATCAGAGTCAGAATCAGTCACACCACCATTTGCTGTATCGTACCTCATCAACAATTTTGATTTCACTCCTCAATCTGCTCTCAAAGCTTTCAACAACAATCAGGTTCTTTTCAAATCTGCAGAAAATCCTAATTCAGTTATCAATTTCTTCAAAAACCGTGATTTTTCACACTCCGACATACGAATCATCATTAGAAAAGCGCCATGGTTACTTTCATTACAACCCCACAATATAATTTTGCCCAAGTTTGAATTTTTTCTATCCAAAGGTGCTACTTCATCTGATATTGTTTCATTCATAACCGCAAACCCTCGAATTTTGCGAAGTAGCTTGGAGAAACGAATAATCCCTCTTTTTCAATTGTTCAGTAGGTTTTTGAAAACCAACAAGGATATCATTCTTTGCTTACTTCGACATTCGACTTATGTTACTTTTAATTCCTATCACCTTGTTGTGGCTAATATCAATTTGATGACTGATTTTGGAGTTTCTGATTCTGTCATTTCTAGATTGCTTCTGAAAAGGCCATCTATATTTGGTTCAACTGATTTGATTAAGTCATTGGAAGAAGTTCATGGTTTAGGATTTGATCCTTCAATGGCTACTTTTGGGGATGCTTTGTTTGCCAAGAAATGTATGAGTAAAACACGGTGGGATGAGAAAGTTGATGTTTTTAAGAAATGGGGTTGGTTTGATGAAGCTTTTTTTCAAGCATTTAGGTTGCATCCTAATTTGATGTTGGCTTCAATTGAAAAGATTAATTTTGTGATGCATTTTTGGGTCAACCAATTGGGTTGGGATTCCTTGGAACTTACTAAATGTCCACATATGTTTGGTTATAGTTTACATCAAAGGATCATTCCAAGGGCCTCAGTTTTGCAATTTCTTTTGATGAAAGGTTTGCGAGATAAGAATGAAAGCTTAGTTACACCATTTGCTCATTCTGAGAAATTTTTCTTGAGCAAGTTTGTCTTTAAGGAGGAGTCTGATTATCTATTAAAGCTATATGTGGAAAAAATGAAACCTGCATACACAAAGGAGAACAATGGCATGCAATTCACTAATTAG
Protein sequence

>MS.gene004590.t1

MLKKWFLSQNVALAIITTKSTTPKFNNPLLNPNFSFPFSLTRFSTTTSESESVTPPFAVSYLINNFDFTPQSALKAFNNNQVLFKSAENPNSVINFFKNRDFSHSDIRIIIRKAPWLLSLQPHNIILPKFEFFLSKGATSSDIVSFITANPRILRSSLEKRIIPLFQLFSRFLKTNKDIILCLLRHSTYVTFNSYHLVVANINLMTDFGVSDSVISRLLLKRPSIFGSTDLIKSLEEVHGLGFDPSMATFGDALFAKKCMSKTRWDEKVDVFKKWGWFDEAFFQAFRLHPNLMLASIEKINFVMHFWVNQLGWDSLELTKCPHMFGYSLHQRIIPRASVLQFLLMKGLRDKNESLVTPFAHSEKFFLSKFVFKEESDYLLKLYVEKMKPAYTKENNGMQFTN