AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene00381

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00381.t1 MTR_2g437940 63.429 350 89 5 6 320 29 374 1.71e-145 415
MS.gene00381.t1 MTR_2g437150 56.319 364 90 5 21 315 42 405 1.24e-129 375
MS.gene00381.t1 MTR_2g437170 56.630 362 88 5 21 313 42 403 1.37e-129 375
MS.gene00381.t1 MTR_2g437960 57.386 352 87 4 30 318 53 404 2.18e-128 372
MS.gene00381.t1 MTR_2g437960 57.429 350 86 4 30 316 53 402 3.64e-128 373
MS.gene00381.t1 MTR_2g076320 56.338 355 92 3 29 320 49 403 7.96e-128 371
MS.gene00381.t1 MTR_2g437180 55.228 373 98 7 6 315 29 395 2.05e-126 367
MS.gene00381.t1 MTR_2g437120 56.780 354 89 5 22 312 43 395 3.72e-125 365
MS.gene00381.t1 MTR_2g437990 57.429 350 87 5 29 316 49 398 2.97e-124 363
MS.gene00381.t1 MTR_2g438010 54.674 353 97 4 29 318 69 421 1.67e-123 360
MS.gene00381.t1 MTR_2g437160 58.863 299 86 3 21 313 50 317 1.18e-116 339
MS.gene00381.t1 MTR_2g437160 52.089 359 106 5 21 313 50 408 8.27e-116 340
MS.gene00381.t1 MTR_2g437130 52.000 350 110 3 25 316 38 387 2.03e-112 331
MS.gene00381.t1 MTR_2g437100 51.852 351 104 4 15 300 45 395 3.00e-111 329
MS.gene00381.t1 MTR_2g437240 59.233 287 91 3 58 318 130 416 2.97e-107 319
MS.gene00381.t1 MTR_2g437240 63.121 141 48 2 1 138 1 140 1.91e-50 172
MS.gene00381.t1 MTR_2g438020 61.905 273 78 3 69 316 181 452 7.07e-106 318
MS.gene00381.t1 MTR_2g438020 77.419 93 21 0 29 121 70 162 3.35e-41 150
MS.gene00381.t1 MTR_2g437020 46.439 351 125 4 20 308 29 378 3.23e-101 302
MS.gene00381.t1 MTR_2g437260 47.709 371 128 8 1 305 1 371 1.15e-100 301
MS.gene00381.t1 MTR_2g437200 58.427 267 85 3 60 300 132 398 6.57e-96 289
MS.gene00381.t1 MTR_2g437200 72.358 123 32 1 1 121 1 123 4.61e-53 179
MS.gene00381.t1 MTR_4g119550 45.029 342 129 3 26 308 47 388 4.16e-95 287
MS.gene00381.t1 MTR_2g437060 44.857 350 133 3 19 308 44 393 2.03e-93 283
MS.gene00381.t1 MTR_2g437080 42.898 352 141 3 19 310 29 380 1.90e-91 277
MS.gene00381.t1 MTR_2g436440 42.582 364 149 4 9 312 25 388 2.11e-91 278
MS.gene00381.t1 MTR_2g437040 43.020 351 140 3 22 312 32 382 3.92e-91 276
MS.gene00381.t1 MTR_2g437030 44.350 354 137 4 19 312 115 468 5.01e-91 279
MS.gene00381.t1 MTR_2g436400 40.884 362 147 4 10 304 20 381 1.31e-84 260
MS.gene00381.t1 MTR_2g436460 43.917 337 130 6 24 301 41 377 5.65e-77 240
MS.gene00381.t1 MTR_4g119580 42.462 325 129 3 32 298 46 370 1.25e-76 239
MS.gene00381.t1 MTR_4g120380 39.286 336 144 3 23 298 35 370 7.82e-69 219
MS.gene00381.t1 MTR_2g019840 39.359 343 144 6 24 305 37 376 1.67e-65 211
MS.gene00381.t1 MTR_2g437090 54.971 171 77 0 143 313 1 171 3.30e-63 198
MS.gene00381.t1 MTR_4g120380 39.873 316 130 3 23 278 35 350 4.02e-63 206
MS.gene00381.t1 MTR_4g120380 29.461 241 126 8 62 265 183 416 3.10e-18 85.1
MS.gene00381.t1 MTR_2g019810 38.554 332 142 5 29 300 30 359 1.72e-59 195
MS.gene00381.t1 MTR_3g085240 40.132 304 93 8 1 291 21 248 1.39e-50 168
MS.gene00381.t1 MTR_4g119570 35.537 242 101 3 79 298 21 229 1.35e-35 129
MS.gene00381.t1 MTR_3g450500 25.786 318 197 6 18 298 55 370 1.21e-32 124
MS.gene00381.t1 MTR_4g007490 24.242 330 187 3 32 298 39 368 5.13e-30 117
MS.gene00381.t1 MTR_4g049400 46.903 113 54 2 21 127 37 149 9.41e-25 100
MS.gene00381.t1 MTR_2g436370 44.167 120 58 2 10 120 19 138 1.00e-24 99.8
MS.gene00381.t1 MTR_8g081000 23.779 307 201 6 23 298 81 385 2.64e-18 85.1
MS.gene00381.t1 MTR_8g081000 23.779 307 201 6 23 298 81 385 2.90e-18 85.1
MS.gene00381.t1 MTR_8g081000 23.779 307 201 6 23 298 81 385 3.11e-18 85.1
MS.gene00381.t1 MTR_8g080990 23.179 302 199 5 24 294 69 368 4.04e-17 81.6
MS.gene00381.t1 MTR_2g436380 55.738 61 27 0 143 203 1 61 1.67e-16 78.6
MS.gene00381.t1 MTR_2g019830 50.000 78 36 2 230 305 128 204 7.63e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00381.t1 AT5G07900 27.879 330 174 5 32 297 70 399 2.28e-38 140
MS.gene00381.t1 AT1G61990 27.273 385 186 6 7 297 24 408 2.28e-34 130
MS.gene00381.t1 AT1G61990 27.273 385 186 6 7 297 24 408 2.28e-34 130
MS.gene00381.t1 AT1G21150 28.485 330 168 5 32 295 57 384 1.22e-28 114
MS.gene00381.t1 AT1G21150 28.485 330 168 5 32 295 121 448 2.87e-28 114
MS.gene00381.t1 AT1G21150 28.228 333 171 5 29 295 18 348 2.96e-28 112
MS.gene00381.t1 AT1G61980 24.207 347 168 7 32 283 53 399 1.14e-19 89.4
MS.gene00381.t1 AT1G61980 24.207 347 168 7 32 283 53 399 1.14e-19 89.4
MS.gene00381.t1 AT1G61980 24.207 347 168 7 32 283 53 399 1.14e-19 89.4
MS.gene00381.t1 AT5G64950 25.672 335 206 8 5 298 44 376 4.18e-19 87.4
MS.gene00381.t1 AT3G46950 25.564 266 142 4 6 215 26 291 4.18e-19 87.8
MS.gene00381.t1 AT1G62010 25.879 313 139 6 64 283 71 383 4.98e-19 87.4
MS.gene00381.t1 AT1G61970 22.989 348 171 8 32 283 53 399 6.41e-18 84.3
MS.gene00381.t1 AT1G61970 22.989 348 171 8 32 283 53 399 6.41e-18 84.3
MS.gene00381.t1 AT1G61970 22.989 348 171 8 32 283 53 399 6.41e-18 84.3
MS.gene00381.t1 AT1G61970 22.989 348 171 8 32 283 53 399 6.41e-18 84.3
MS.gene00381.t1 AT1G61970 22.989 348 171 8 32 283 53 399 6.41e-18 84.3
MS.gene00381.t1 AT1G61970 22.989 348 171 8 32 283 53 399 6.41e-18 84.3
MS.gene00381.t1 AT1G61970 22.989 348 171 8 32 283 53 399 6.41e-18 84.3
MS.gene00381.t1 AT1G62085 38.983 118 70 1 32 149 56 171 8.88e-18 84.0
MS.gene00381.t1 AT1G62085 38.983 118 70 1 32 149 56 171 8.88e-18 84.0
MS.gene00381.t1 AT5G23930 23.138 376 165 5 32 283 56 431 1.72e-17 83.2
MS.gene00381.t1 AT1G62120 41.000 100 59 0 29 128 54 153 3.73e-17 82.0
MS.gene00381.t1 AT1G61960 37.288 118 72 1 32 149 53 168 2.17e-15 77.0
MS.gene00381.t1 AT1G62150 34.746 118 75 1 32 149 59 174 8.26e-15 75.1
MS.gene00381.t1 AT1G62110 38.144 97 60 0 32 128 53 149 9.56e-14 72.0
MS.gene00381.t1 AT1G56380 28.218 202 124 5 32 212 17 218 2.98e-12 67.4
MS.gene00381.t1 AT1G56380 28.079 203 125 5 32 213 28 230 3.64e-12 67.0

Find 54 sgRNAs with CRISPR-Local

Find 91 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAACAAGGCCATCTATATT+TGG 0.171090 2.2:-51197650 MS.gene00381:CDS
TTCAATTGATAAGATTAATT+TGG 0.211307 2.2:-51197423 MS.gene00381:CDS
CTGAGCGCTGTTGAAGTATT+TGG 0.225367 2.2:+51198292 None:intergenic
TTTCTCTGTCGCAATGCTTT+TGG 0.260075 2.2:-51198319 MS.gene00381:CDS
CTCGAGGAAGTTAAGTGTTT+AGG 0.270507 2.2:-51197605 MS.gene00381:CDS
TCGAGGAAGTTAAGTGTTTA+GGG 0.279746 2.2:-51197604 MS.gene00381:CDS
AGACCAACCCCATTTCTTAA+AGG 0.303126 2.2:+51197496 None:intergenic
TTGGTTATAGTTTACATAAA+AGG 0.315414 2.2:-51197334 MS.gene00381:CDS
AAGCTCTTATTCGAGCATTT+AGG 0.335429 2.2:-51197469 MS.gene00381:CDS
AAGAAGTTGATAACTGAATC+TGG 0.340602 2.2:+51198145 None:intergenic
AAATTGATGCCTTTAAGAAA+TGG 0.366199 2.2:-51197505 MS.gene00381:CDS
GACATTGTCCGCATGGTTAG+AGG 0.371549 2.2:-51197989 MS.gene00381:intron
TTGGGTTAATCAATTGGGTT+GGG 0.372882 2.2:-51197390 MS.gene00381:CDS
AATTGATGCCTTTAAGAAAT+GGG 0.373623 2.2:-51197504 MS.gene00381:CDS
ACTAAATGTCCACATATGTT+TGG 0.382004 2.2:-51197353 MS.gene00381:CDS
TCTTACCTCATCGACAAATT+CGG 0.397420 2.2:-51198229 MS.gene00381:CDS
GTCAGAGGAAGAAGCACCTT+TGG 0.409246 2.2:+51198009 None:intergenic
AGATCAAAATCTTACACGTT+TGG 0.417689 2.2:+51197100 None:intergenic
TCAGTTGAACCAAATATAGA+TGG 0.441181 2.2:+51197641 None:intergenic
AATTGTAAAACTGTTGCCCT+TGG 0.447622 2.2:+51197305 None:intergenic
AGTTTCACCGTTTACTTCTA+CGG 0.454798 2.2:-51197243 MS.gene00381:CDS
TTTCCTGCAATACCCAGAAA+AGG 0.456578 2.2:-51198060 MS.gene00381:CDS
TTTGGGTTAATCAATTGGGT+TGG 0.479493 2.2:-51197391 MS.gene00381:CDS
TCAAAATCTTACACGTTTGG+TGG 0.487228 2.2:+51197103 None:intergenic
AAATTCTCCGTAGAAGTAAA+CGG 0.504265 2.2:+51197236 None:intergenic
CTCAAAGCTTCACAACACCT+TGG 0.515370 2.2:-51198187 MS.gene00381:CDS
ACACAGCGAATGGGTGTGAA+GGG 0.521968 2.2:+51198251 None:intergenic
ATCAACTTCTTCAAAACTCA+CGG 0.525351 2.2:-51198133 MS.gene00381:CDS
AATCTTACACGTTTGGTGGA+TGG 0.526508 2.2:+51197107 None:intergenic
TTCCTCTGACATTGTCCGCA+TGG 0.536848 2.2:-51197996 MS.gene00381:CDS
AAACTATAACCAAACATATG+TGG 0.543018 2.2:+51197344 None:intergenic
ATTGAAGTCAACATCAAATG+AGG 0.545357 2.2:+51197440 None:intergenic
ATTGTAAAACTGTTGCCCTT+GGG 0.546170 2.2:+51197306 None:intergenic
TTATCTATTAAAGCTATATG+AGG 0.548013 2.2:-51197171 MS.gene00381:CDS
TCAATTGGGTTGGGAGTCCG+TGG 0.556415 2.2:-51197381 MS.gene00381:CDS
GACACAGCGAATGGGTGTGA+AGG 0.569465 2.2:+51198250 None:intergenic
ATTGATGCCTTTAAGAAATG+GGG 0.570019 2.2:-51197503 MS.gene00381:CDS
ATGAGGTAAGACACAGCGAA+TGG 0.571025 2.2:+51198241 None:intergenic
TGAGGTAAGACACAGCGAAT+GGG 0.579183 2.2:+51198242 None:intergenic
TACATAAAAGGATCATCCCA+AGG 0.580190 2.2:-51197322 MS.gene00381:CDS
TCGCTAATTTGCTTCAAACA+AGG 0.580422 2.2:-51197664 MS.gene00381:CDS
ATGCCTTTAAGAAATGGGGT+TGG 0.586352 2.2:-51197499 MS.gene00381:CDS
AGCGAATGGGTGTGAAGGGG+TGG 0.603382 2.2:+51198255 None:intergenic
TGGACATTTAGTAAGTTCCA+CGG 0.615250 2.2:+51197364 None:intergenic
AACCATGCGGACAATGTCAG+AGG 0.637694 2.2:+51197994 None:intergenic
AGAATCCGAATTTGTCGATG+AGG 0.644644 2.2:+51198224 None:intergenic
CACAGCGAATGGGTGTGAAG+GGG 0.654655 2.2:+51198252 None:intergenic
AATGAAACTTGCAAATACAG+AGG 0.656768 2.2:-51197144 MS.gene00381:CDS
ACATAAAAGGATCATCCCAA+GGG 0.658832 2.2:-51197321 MS.gene00381:CDS
TGATTTGATTAAATCACTCG+AGG 0.661488 2.2:-51197621 MS.gene00381:CDS
GCATCATCAAAAGAGAACCA+TGG 0.663051 2.2:-51198087 MS.gene00381:CDS
GTATTGCAGGAAAGAAGCCA+TGG 0.665041 2.2:+51198070 None:intergenic
GCAAATACAGAGGAGAACAA+TGG 0.699950 2.2:-51197134 MS.gene00381:CDS
GAGGGTTACCTCTAACCATG+CGG 0.732169 2.2:+51197981 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTAACAATTCAAAAAGA+GGG + chr2.2:51197618-51197637 None:intergenic 15.0%
!! TTCAATTGATAAGATTAATT+TGG - chr2.2:51198011-51198030 MS.gene00381:CDS 15.0%
!! AATGTTTGAGTAAAAAACTT+TGG - chr2.2:51197899-51197918 MS.gene00381:intron 20.0%
!! AGATTAAAAACTGAAACTTT+GGG + chr2.2:51197405-51197424 None:intergenic 20.0%
!! ATGTTTGAGTAAAAAACTTT+GGG - chr2.2:51197900-51197919 MS.gene00381:intron 20.0%
!! CTATTTAACAATTCAAAAAG+AGG + chr2.2:51197619-51197638 None:intergenic 20.0%
!! TTATCTATTAAAGCTATATG+AGG - chr2.2:51198263-51198282 MS.gene00381:CDS 20.0%
!! TTGGTTATAGTTTACATAAA+AGG - chr2.2:51198100-51198119 MS.gene00381:CDS 20.0%
!!! ATCAATTTGATGATTGATTT+TGG - chr2.2:51197730-51197749 MS.gene00381:intron 20.0%
!!! CTCTTTTTGAATTGTTAAAT+AGG - chr2.2:51197617-51197636 MS.gene00381:CDS 20.0%
!!! TTACAATTTCTTTTGATGAA+AGG - chr2.2:51198144-51198163 MS.gene00381:CDS 20.0%
!!! TTTCAATATTTTCTATCCAA+AGG - chr2.2:51197514-51197533 MS.gene00381:CDS 20.0%
!!! TTTTTTACTCAAACATTTCT+TGG + chr2.2:51197896-51197915 None:intergenic 20.0%
! AAACTATAACCAAACATATG+TGG + chr2.2:51198093-51198112 None:intergenic 25.0%
! AATTGATATTAGTCACCATA+AGG + chr2.2:51197717-51197736 None:intergenic 25.0%
! GAGATTAAAAACTGAAACTT+TGG + chr2.2:51197406-51197425 None:intergenic 25.0%
!! AAATTGATGCCTTTAAGAAA+TGG - chr2.2:51197929-51197948 MS.gene00381:intron 25.0%
!! AATTGATGCCTTTAAGAAAT+GGG - chr2.2:51197930-51197949 MS.gene00381:intron 25.0%
!! TTTCAGTTTTTAATCTCCAA+AGG - chr2.2:51197409-51197428 MS.gene00381:CDS 25.0%
!!! AGTTTTTGGGTTAATCAATT+GGG - chr2.2:51198039-51198058 MS.gene00381:CDS 25.0%
!!! TAATTTGGTGATGAGTTTTT+GGG - chr2.2:51198026-51198045 MS.gene00381:CDS 25.0%
!!! TTAATTTGGTGATGAGTTTT+TGG - chr2.2:51198025-51198044 MS.gene00381:CDS 25.0%
AAATTCTCCGTAGAAGTAAA+CGG + chr2.2:51198201-51198220 None:intergenic 30.0%
AAGCTAATGTGTAAAGTTGT+AGG + chr2.2:51197580-51197599 None:intergenic 30.0%
AATGAAACTTGCAAATACAG+AGG - chr2.2:51198290-51198309 MS.gene00381:CDS 30.0%
ACTAAATGTCCACATATGTT+TGG - chr2.2:51198081-51198100 MS.gene00381:CDS 30.0%
ATCAACTTCTTCAAAACTCA+CGG - chr2.2:51197301-51197320 MS.gene00381:CDS 30.0%
ATCGCAAAAATAGTCATTGA+AGG + chr2.2:51197862-51197881 None:intergenic 30.0%
ATGTCGAATTAAGCAAACAA+TGG + chr2.2:51197665-51197684 None:intergenic 30.0%
ATTAGATGAAGAAACACCTT+TGG + chr2.2:51197533-51197552 None:intergenic 30.0%
ATTGAAGTCAACATCAAATG+AGG + chr2.2:51197997-51198016 None:intergenic 30.0%
TACAACTTTACACATTAGCT+TGG - chr2.2:51197579-51197598 MS.gene00381:CDS 30.0%
TCAGTTGAACCAAATATAGA+TGG + chr2.2:51197796-51197815 None:intergenic 30.0%
TCGCAAAAATAGTCATTGAA+GGG + chr2.2:51197861-51197880 None:intergenic 30.0%
TGATTTGATTAAATCACTCG+AGG - chr2.2:51197813-51197832 MS.gene00381:intron 30.0%
! ATTGATGCCTTTAAGAAATG+GGG - chr2.2:51197931-51197950 MS.gene00381:intron 30.0%
!! AAGAAGTTGATAACTGAATC+TGG + chr2.2:51197292-51197311 None:intergenic 30.0%
!! CAAGTTTGTTTTCAGCTTTA+AGG - chr2.2:51198230-51198249 MS.gene00381:CDS 30.0%
!!! GAGTTTTTGGGTTAATCAAT+TGG - chr2.2:51198038-51198057 MS.gene00381:CDS 30.0%
AAGCTCTTATTCGAGCATTT+AGG - chr2.2:51197965-51197984 MS.gene00381:intron 35.0%
AAGCTTAATTCCAAGAACTG+AGG + chr2.2:51197475-51197494 None:intergenic 35.0%
AATTGTAAAACTGTTGCCCT+TGG + chr2.2:51198132-51198151 None:intergenic 35.0%
ACATAAAAGGATCATCCCAA+GGG - chr2.2:51198113-51198132 MS.gene00381:CDS 35.0%
AGCTTAATTCCAAGAACTGA+GGG + chr2.2:51197474-51197493 None:intergenic 35.0%
AGTTTCACCGTTTACTTCTA+CGG - chr2.2:51198191-51198210 MS.gene00381:CDS 35.0%
ATTGTAAAACTGTTGCCCTT+GGG + chr2.2:51198131-51198150 None:intergenic 35.0%
CAAACAAGGCCATCTATATT+TGG - chr2.2:51197784-51197803 MS.gene00381:intron 35.0%
TACATAAAAGGATCATCCCA+AGG - chr2.2:51198112-51198131 MS.gene00381:CDS 35.0%
TAGGTTCTTCAAATCCAGTA+AGG - chr2.2:51197636-51197655 MS.gene00381:CDS 35.0%
TCAAAATCTTACACGTTTGG+TGG + chr2.2:51198334-51198353 None:intergenic 35.0%
TCGAGGAAGTTAAGTGTTTA+GGG - chr2.2:51197830-51197849 MS.gene00381:intron 35.0%
TCTTACCTCATCGACAAATT+CGG - chr2.2:51197205-51197224 MS.gene00381:CDS 35.0%
TGGACATTTAGTAAGTTCCA+CGG + chr2.2:51198073-51198092 None:intergenic 35.0%
TTGGGTTAATCAATTGGGTT+GGG - chr2.2:51198044-51198063 MS.gene00381:CDS 35.0%
! TTTGGGTTAATCAATTGGGT+TGG - chr2.2:51198043-51198062 MS.gene00381:CDS 35.0%
!! TCGCTAATTTGCTTCAAACA+AGG - chr2.2:51197770-51197789 MS.gene00381:intron 35.0%
!! TTTTAATTGCCATCGCCTTA+TGG - chr2.2:51197699-51197718 MS.gene00381:intron 35.0%
!!! AACTGAATCTGGTTTTAGTG+AGG + chr2.2:51197281-51197300 None:intergenic 35.0%
!!! ACTTTGGGATAATCCTTTTC+TGG + chr2.2:51197390-51197409 None:intergenic 35.0%
!!! CTTTGGGATAATCCTTTTCT+GGG + chr2.2:51197389-51197408 None:intergenic 35.0%
!!! GACTATTTTTGCGATTGCTT+TGG - chr2.2:51197867-51197886 MS.gene00381:intron 35.0%
!!! GTTTGTTTTCAGCTTTAAGG+AGG - chr2.2:51198233-51198252 MS.gene00381:CDS 35.0%
!!! TTAGTGAGGTTTTGAAACCA+AGG + chr2.2:51197267-51197286 None:intergenic 35.0%
AGAATCCGAATTTGTCGATG+AGG + chr2.2:51197213-51197232 None:intergenic 40.0%
AGACCAACCCCATTTCTTAA+AGG + chr2.2:51197941-51197960 None:intergenic 40.0%
CTCGAGGAAGTTAAGTGTTT+AGG - chr2.2:51197829-51197848 MS.gene00381:intron 40.0%
GCAAACAATGGTATCCTTAC+TGG + chr2.2:51197653-51197672 None:intergenic 40.0%
GCAAATACAGAGGAGAACAA+TGG - chr2.2:51198300-51198319 MS.gene00381:CDS 40.0%
GCATCATCAAAAGAGAACCA+TGG - chr2.2:51197347-51197366 MS.gene00381:CDS 40.0%
TATTAGTCACCATAAGGCGA+TGG + chr2.2:51197711-51197730 None:intergenic 40.0%
TTTCCTGCAATACCCAGAAA+AGG - chr2.2:51197374-51197393 MS.gene00381:CDS 40.0%
! AATCTTACACGTTTGGTGGA+TGG + chr2.2:51198330-51198349 None:intergenic 40.0%
! ATGCCTTTAAGAAATGGGGT+TGG - chr2.2:51197935-51197954 MS.gene00381:intron 40.0%
! TTTCTCTGTCGCAATGCTTT+TGG - chr2.2:51197115-51197134 MS.gene00381:CDS 40.0%
!! AATCCTTTTCTGGGTATTGC+AGG + chr2.2:51197380-51197399 None:intergenic 40.0%
ATGAGGTAAGACACAGCGAA+TGG + chr2.2:51197196-51197215 None:intergenic 45.0%
CTCAAAGCTTCACAACACCT+TGG - chr2.2:51197247-51197266 MS.gene00381:CDS 45.0%
GTATTGCAGGAAAGAAGCCA+TGG + chr2.2:51197367-51197386 None:intergenic 45.0%
TAGAGGTAACCCTCAGTTCT+TGG - chr2.2:51197462-51197481 MS.gene00381:CDS 45.0%
TGAGGTAAGACACAGCGAAT+GGG + chr2.2:51197195-51197214 None:intergenic 45.0%
! CTGAGCGCTGTTGAAGTATT+TGG + chr2.2:51197145-51197164 None:intergenic 45.0%
AACCATGCGGACAATGTCAG+AGG + chr2.2:51197443-51197462 None:intergenic 50.0%
ACACAGCGAATGGGTGTGAA+GGG + chr2.2:51197186-51197205 None:intergenic 50.0%
GACATTGTCCGCATGGTTAG+AGG - chr2.2:51197445-51197464 MS.gene00381:CDS 50.0%
GAGGGTTACCTCTAACCATG+CGG + chr2.2:51197456-51197475 None:intergenic 50.0%
TTCCTCTGACATTGTCCGCA+TGG - chr2.2:51197438-51197457 MS.gene00381:CDS 50.0%
!! GTCAGAGGAAGAAGCACCTT+TGG + chr2.2:51197428-51197447 None:intergenic 50.0%
CACAGCGAATGGGTGTGAAG+GGG + chr2.2:51197185-51197204 None:intergenic 55.0%
GACACAGCGAATGGGTGTGA+AGG + chr2.2:51197187-51197206 None:intergenic 55.0%
!! TCAATTGGGTTGGGAGTCCG+TGG - chr2.2:51198053-51198072 MS.gene00381:CDS 55.0%
AGCGAATGGGTGTGAAGGGG+TGG + chr2.2:51197182-51197201 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 51197103 51198353 51197103 ID=MS.gene00381
chr2.2 mRNA 51197103 51198353 51197103 ID=MS.gene00381.t1;Parent=MS.gene00381
chr2.2 exon 51197990 51198353 51197990 ID=MS.gene00381.t1.exon1;Parent=MS.gene00381.t1
chr2.2 CDS 51197990 51198353 51197990 ID=cds.MS.gene00381.t1;Parent=MS.gene00381.t1
chr2.2 exon 51197103 51197701 51197103 ID=MS.gene00381.t1.exon2;Parent=MS.gene00381.t1
chr2.2 CDS 51197103 51197701 51197103 ID=cds.MS.gene00381.t1;Parent=MS.gene00381.t1
Gene Sequence

>MS.gene00381

ATGTTGAAAGCATTTCTCTGTCGCAATGCTTTTGGCATACCAAATACTTCAACAGCGCTCAGATTCATTAGCACAACCACCCCTTCACACCCATTCGCTGTGTCTTACCTCATCGACAAATTCGGATTCTCACATGAATTTGCACTCAAAGCTTCACAACACCTTGGTTTCAAAACCTCACTAAAACCAGATTCAGTTATCAACTTCTTCAAAACTCACGGTTTCACTGACTCAGACATAAAAAGCATCATCAAAAGAGAACCATGGCTTCTTTCCTGCAATACCCAGAAAAGGATTATCCCAAAGTTTCAGTTTTTAATCTCCAAAGGTGCTTCTTCCTCTGACATTGTCCGCATGGTTAGAGGTAACCCTCAGTTCTTGGAATTAAGCTTGAAAAATCATGAAATTAAGTTTCAATATTTTCTATCCAAAGGTGTTTCTTCATCTAATATTATTTCATTGTTAACTAAAAATCCTACAACTTTACACATTAGCTTGGAGAAACAAATAATCCCTCTTTTTGAATTGTTAAATAGGTTCTTCAAATCCAGTAAGGATACCATTGTTTGCTTAATTCGACATTCAACTACATTTGCTTTTAATTGCCATCGCCTTATGGTGACTAATATCAATTTGATGATTGATTTTGGAGTTTCTGATTCTATCATCGCTAATTTGCTTCAAACAAGGCCATCTATATTTGGTTCAACTGATTTGATTAAATCACTCGAGGAAGTTAAGTGTTTAGGGTTTGACCCTTCAATGACTATTTTTGCGATTGCTTTGGCAGCCAAGAAATGTTTGAGTAAAAAACTTTGGGATGAGAAAATTGATGCCTTTAAGAAATGGGGTTGGTCTGATGAAGCTCTTATTCGAGCATTTAGGTGTCAGCCTCATTTGATGTTGACTTCAATTGATAAGATTAATTTGGTGATGAGTTTTTGGGTTAATCAATTGGGTTGGGAGTCCGTGGAACTTACTAAATGTCCACATATGTTTGGTTATAGTTTACATAAAAGGATCATCCCAAGGGCAACAGTTTTACAATTTCTTTTGATGAAAGGTTTGCGAAAAAAGAATGCAAGCTTAGTTTCACCGTTTACTTCTACGGAGAATTTGTTCTTGAACAAGTTTGTTTTCAGCTTTAAGGAGGAGTCTGATTATCTATTAAAGCTATATGAGGAAAAAATGAAACTTGCAAATACAGAGGAGAACAATGGCATGCCATCCACCAAACGTGTAAGATTTTGA
Protein sequence

>MS.gene00381.t1

MLKAFLCRNAFGIPNTSTALRFISTTTPSHPFAVSYLIDKFGFSHEFALKASQHLGFKTSLKPDSVINFFKTHGFTDSDIKSIIKREPWLLSCNTQKRIIPKFQFLISKGASSSDIVRMVRVSDSIIANLLQTRPSIFGSTDLIKSLEEVKCLGFDPSMTIFAIALAAKKCLSKKLWDEKIDAFKKWGWSDEALIRAFRCQPHLMLTSIDKINLVMSFWVNQLGWESVELTKCPHMFGYSLHKRIIPRATVLQFLLMKGLRKKNASLVSPFTSTENLFLNKFVFSFKEESDYLLKLYEEKMKLANTEENNGMPSTKRVRF