AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene073372

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene073372.t1 MTR_2g437040 93.734 383 24 0 1 383 1 383 0.0 723
MS.gene073372.t1 MTR_2g436440 65.722 388 127 2 1 382 1 388 0.0 512
MS.gene073372.t1 MTR_2g437060 66.667 390 118 2 3 380 6 395 0.0 510
MS.gene073372.t1 MTR_2g437080 63.874 382 138 0 1 382 1 382 7.00e-178 499
MS.gene073372.t1 MTR_2g437020 64.785 372 125 3 14 380 10 380 3.66e-170 480
MS.gene073372.t1 MTR_2g437030 62.916 391 135 2 1 382 79 468 6.33e-169 480
MS.gene073372.t1 MTR_2g436400 62.097 372 139 1 5 374 10 381 1.05e-164 466
MS.gene073372.t1 MTR_4g119550 50.435 345 168 2 36 379 47 389 3.57e-124 363
MS.gene073372.t1 MTR_2g437260 49.162 358 176 3 24 377 18 373 1.23e-121 357
MS.gene073372.t1 MTR_2g437200 50.266 376 147 4 33 370 25 398 3.22e-121 356
MS.gene073372.t1 MTR_2g437240 49.096 387 157 3 35 383 27 411 9.76e-120 353
MS.gene073372.t1 MTR_2g437130 49.861 361 177 2 22 382 27 383 6.08e-119 350
MS.gene073372.t1 MTR_2g437990 48.454 388 193 3 2 382 7 394 8.16e-119 351
MS.gene073372.t1 MTR_2g437120 50.565 354 171 2 32 382 43 395 1.20e-117 348
MS.gene073372.t1 MTR_2g438010 47.558 389 196 3 2 382 27 415 9.87e-117 346
MS.gene073372.t1 MTR_2g437170 50.556 360 169 3 32 382 43 402 2.10e-116 345
MS.gene073372.t1 MTR_2g437960 50.872 344 166 1 42 382 55 398 2.65e-116 344
MS.gene073372.t1 MTR_2g437960 50.872 344 166 1 42 382 55 398 5.53e-116 344
MS.gene073372.t1 MTR_2g436460 48.031 381 175 6 13 373 2 379 1.42e-114 339
MS.gene073372.t1 MTR_2g076320 47.301 389 197 3 2 382 7 395 3.89e-114 338
MS.gene073372.t1 MTR_2g437150 49.046 367 177 4 26 382 36 402 2.90e-113 337
MS.gene073372.t1 MTR_2g437160 48.209 363 186 1 22 382 45 407 2.09e-112 334
MS.gene073372.t1 MTR_2g437180 49.143 350 173 2 36 382 45 392 2.13e-111 331
MS.gene073372.t1 MTR_2g437100 51.198 334 158 2 42 370 62 395 3.17e-108 323
MS.gene073372.t1 MTR_2g438020 45.503 378 164 4 39 377 70 444 3.41e-105 319
MS.gene073372.t1 MTR_4g120380 46.524 374 190 6 1 368 1 370 6.03e-104 311
MS.gene073372.t1 MTR_4g119580 46.176 340 179 2 31 368 33 370 6.55e-103 309
MS.gene073372.t1 MTR_2g437940 46.648 358 163 3 25 382 37 366 5.36e-100 301
MS.gene073372.t1 MTR_4g120380 46.610 354 179 6 1 348 1 350 1.71e-96 294
MS.gene073372.t1 MTR_2g019810 45.970 335 169 7 41 370 32 359 3.18e-95 289
MS.gene073372.t1 MTR_2g019840 42.105 380 204 6 4 374 3 375 1.34e-93 285
MS.gene073372.t1 MTR_2g436370 62.121 198 63 3 1 189 1 195 3.99e-73 227
MS.gene073372.t1 MTR_2g437090 61.446 166 64 0 215 380 3 168 7.22e-72 222
MS.gene073372.t1 MTR_2g437160 49.754 203 99 1 183 382 114 316 4.53e-63 205
MS.gene073372.t1 MTR_3g450500 32.086 374 235 5 6 368 5 370 1.10e-58 195
MS.gene073372.t1 MTR_4g119570 37.751 249 122 1 120 368 14 229 1.08e-52 175
MS.gene073372.t1 MTR_4g007490 31.700 347 228 5 28 368 25 368 1.26e-48 169
MS.gene073372.t1 MTR_8g080990 31.525 295 199 2 73 364 74 368 5.13e-40 146
MS.gene073372.t1 MTR_8g081000 26.032 315 229 3 71 381 85 399 2.39e-30 120
MS.gene073372.t1 MTR_8g081000 26.246 301 219 2 71 368 85 385 3.86e-30 119
MS.gene073372.t1 MTR_8g081000 26.246 301 219 2 71 368 85 385 5.77e-30 119
MS.gene073372.t1 MTR_4g049400 48.214 112 54 1 32 139 38 149 1.61e-24 100
MS.gene073372.t1 MTR_2g436380 43.119 109 55 3 217 325 5 106 2.79e-20 90.5
MS.gene073372.t1 MTR_3g085240 37.580 157 85 4 10 163 25 171 9.49e-20 88.2
MS.gene073372.t1 MTR_3g085240 50.847 59 29 0 272 330 176 234 1.25e-13 70.5
MS.gene073372.t1 MTR_8g012210 22.414 290 214 7 86 368 63 348 5.60e-13 70.1
MS.gene073372.t1 MTR_4g119615 56.000 50 22 0 312 361 26 75 1.22e-12 63.9
MS.gene073372.t1 MTR_3g092710 23.684 266 181 6 95 348 236 491 1.55e-12 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene073372.t1 AT5G07900 33.634 333 213 4 41 367 69 399 2.63e-60 200
MS.gene073372.t1 AT1G21150 31.627 332 217 6 41 365 56 384 2.37e-46 163
MS.gene073372.t1 AT1G21150 30.321 343 229 6 30 365 9 348 3.35e-46 162
MS.gene073372.t1 AT1G21150 31.627 332 217 6 41 365 120 448 1.02e-45 163
MS.gene073372.t1 AT1G61980 30.081 369 211 8 41 367 52 415 1.88e-43 156
MS.gene073372.t1 AT1G61980 30.081 369 211 8 41 367 52 415 1.88e-43 156
MS.gene073372.t1 AT1G61980 30.081 369 211 8 41 367 52 415 1.88e-43 156
MS.gene073372.t1 AT1G62085 29.024 410 206 10 27 353 32 439 1.17e-39 147
MS.gene073372.t1 AT1G62085 29.024 410 206 10 27 353 32 439 1.17e-39 147
MS.gene073372.t1 AT3G46950 28.224 411 204 10 22 353 32 430 6.04e-39 145
MS.gene073372.t1 AT1G62120 29.219 397 227 9 5 355 19 407 5.66e-38 142
MS.gene073372.t1 AT1G61990 27.981 411 239 7 5 367 7 408 8.01e-38 141
MS.gene073372.t1 AT1G61990 27.981 411 239 7 5 367 7 408 8.01e-38 141
MS.gene073372.t1 AT1G61970 28.571 406 220 10 5 353 7 399 3.41e-37 139
MS.gene073372.t1 AT1G61970 28.571 406 220 10 5 353 7 399 3.41e-37 139
MS.gene073372.t1 AT1G61970 28.571 406 220 10 5 353 7 399 3.41e-37 139
MS.gene073372.t1 AT1G61970 28.571 406 220 10 5 353 7 399 3.41e-37 139
MS.gene073372.t1 AT1G61970 28.571 406 220 10 5 353 7 399 3.41e-37 139
MS.gene073372.t1 AT1G61970 28.571 406 220 10 5 353 7 399 3.41e-37 139
MS.gene073372.t1 AT1G61970 28.571 406 220 10 5 353 7 399 3.41e-37 139
MS.gene073372.t1 AT5G64950 30.682 352 212 10 30 359 25 366 7.42e-34 130
MS.gene073372.t1 AT1G61960 26.044 407 212 8 42 367 53 451 5.74e-33 128
MS.gene073372.t1 AT1G62110 26.923 390 206 7 41 353 52 439 2.04e-32 127
MS.gene073372.t1 AT1G62150 25.750 400 219 9 35 359 52 448 4.24e-31 123
MS.gene073372.t1 AT5G23930 27.506 389 204 7 41 358 55 436 1.91e-29 119
MS.gene073372.t1 AT1G62010 26.866 335 178 6 76 359 71 389 1.28e-28 115
MS.gene073372.t1 AT1G56380 25.135 370 213 11 42 359 28 385 4.46e-23 100
MS.gene073372.t1 AT1G56380 25.135 370 213 11 42 359 17 374 5.17e-23 99.8
MS.gene073372.t1 AT1G79220 24.026 308 191 9 79 380 119 389 1.87e-13 71.6

Find 74 sgRNAs with CRISPR-Local

Find 104 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATACCTCATTCACAATTT+TGG 0.101172 2.4:-54625396 MS.gene073372:CDS
AATTGCAATCCAACTTTATT+TGG 0.152258 2.4:-54625024 MS.gene073372:CDS
GTGAAAGAGTTAAAGGATTT+AGG 0.167996 2.4:-54624880 MS.gene073372:CDS
TTGCAATGACAGCGCGTATT+TGG 0.169327 2.4:+54625259 None:intergenic
TGCTAAAACACCAAGGGTTT+TGG 0.198044 2.4:-54624629 MS.gene073372:CDS
TAAACTCAGTGATGAGCTTT+TGG 0.230631 2.4:-54624684 MS.gene073372:CDS
TTTCTTCATAAAGCTTTAAT+AGG 0.257224 2.4:+54624443 None:intergenic
TGAAAGAGTTAAAGGATTTA+GGG 0.262679 2.4:-54624879 MS.gene073372:CDS
GAAGAGAGGTTTGCATAAAA+AGG 0.278062 2.4:-54624551 MS.gene073372:CDS
TATGTTCCTTACTGCAAGTT+TGG 0.287367 2.4:-54625121 MS.gene073372:CDS
AGACCAGCCCCATTTCTTAA+AGG 0.311413 2.4:+54624771 None:intergenic
AAACTTTGGCAACACCCTTT+TGG 0.315392 2.4:+54625206 None:intergenic
AAATATTGCAAGATTGCTTC+GGG 0.322556 2.4:-54624944 MS.gene073372:CDS
TGAGTTGGTGAAAGAGTTAA+AGG 0.327328 2.4:-54624887 MS.gene073372:CDS
GGTTTCGGATAAATATGTTT+TGG 0.343580 2.4:+54624816 None:intergenic
AGTTGATACCTTTAAGAAAT+GGG 0.353795 2.4:-54624779 MS.gene073372:CDS
AAGTTGATACCTTTAAGAAA+TGG 0.365182 2.4:-54624780 MS.gene073372:CDS
TTGGGTCAATCAGTTGGGTT+GGG 0.365374 2.4:-54624665 MS.gene073372:CDS
TGCAATGACAGCGCGTATTT+GGG 0.367219 2.4:+54625260 None:intergenic
AATAGTCCCAACCTATGAAT+TGG 0.380595 2.4:-54625091 MS.gene073372:CDS
CTACTTCTTCCAAATAAAGT+TGG 0.386610 2.4:+54625015 None:intergenic
CATGTATATAAATCGGTTTA+AGG 0.388072 2.4:-54624479 MS.gene073372:CDS
GTCAGAGTTAGAAGCACCTT+TGG 0.395726 2.4:+54625170 None:intergenic
TAAATATTGCAAGATTGCTT+CGG 0.406570 2.4:-54624945 MS.gene073372:CDS
GTATTTATAAACCAATTCAT+AGG 0.407861 2.4:+54625080 None:intergenic
AAGAAGTTGAGAACTGAATC+AGG 0.411972 2.4:+54625306 None:intergenic
TATAAACCAATTCATAGGTT+GGG 0.416412 2.4:+54625085 None:intergenic
GTCTCATCAGTGACTATAAA+CGG 0.428293 2.4:+54624511 None:intergenic
TTTGGGTCAATCAGTTGGGT+TGG 0.429067 2.4:-54624666 MS.gene073372:CDS
TCTATGACATGTATATAAAT+CGG 0.442482 2.4:-54624486 MS.gene073372:CDS
TTTCCTGCGATCCCTCCAAA+AGG 0.445420 2.4:-54625221 MS.gene073372:CDS
TCTTGTCCAAACTTGCAGTA+AGG 0.462468 2.4:+54625115 None:intergenic
GTGGAGAAATAGTGAGAAAA+GGG 0.466735 2.4:+54625450 None:intergenic
GGTGGAGAAATAGTGAGAAA+AGG 0.473547 2.4:+54625449 None:intergenic
TGGGTTTGGTGAGAAAGTTA+AGG 0.482786 2.4:+54625485 None:intergenic
AAATAGTGAGAAAAGGGTAA+TGG 0.487797 2.4:+54625456 None:intergenic
TTATAAACCAATTCATAGGT+TGG 0.490431 2.4:+54625084 None:intergenic
TTTAACTCTTTCACCAACTC+AGG 0.490614 2.4:+54624889 None:intergenic
TAAGGTCTTGAGATAGAGAA+GGG 0.500312 2.4:+54625503 None:intergenic
TCAGTTGGGTTGGGATGCTA+TGG 0.506950 2.4:-54624656 MS.gene073372:CDS
TATGATCCTTCGCTCCAGAC+TGG 0.512261 2.4:+54624603 None:intergenic
CTCAACTTCTTTAGAAACCA+TGG 0.514218 2.4:-54625294 MS.gene073372:CDS
AGAATCCAAAATTGTGAATG+AGG 0.517196 2.4:+54625391 None:intergenic
TTAAGGTCTTGAGATAGAGA+AGG 0.519722 2.4:+54625502 None:intergenic
AAACTTGCAGTAAGGAACAT+AGG 0.519839 2.4:+54625123 None:intergenic
CTTGAAATGAACATTGTAAG+TGG 0.523656 2.4:+54625341 None:intergenic
TATTCCACAACTGAGGCTCT+TGG 0.536781 2.4:+54624580 None:intergenic
AACTTGCAGTAAGGAACATA+GGG 0.539419 2.4:+54625124 None:intergenic
TTCCTGCGATCCCTCCAAAA+GGG 0.542143 2.4:-54625220 MS.gene073372:CDS
GAGGTATGAGACAGCAAAAG+AGG 0.548116 2.4:+54625410 None:intergenic
ATACCTTTAAGAAATGGGGC+TGG 0.564816 2.4:-54624774 MS.gene073372:CDS
GGTTGAATCTGAAGTGTTGG+TGG 0.573845 2.4:+54625431 None:intergenic
GTTGATACCTTTAAGAAATG+GGG 0.574983 2.4:-54624778 MS.gene073372:CDS
GTGGAATATCTTCTGAAGAG+AGG 0.579571 2.4:-54624565 MS.gene073372:CDS
CATATTTATCCGAAACCCGA+TGG 0.584129 2.4:-54624810 MS.gene073372:CDS
ATCAAATTGTTGATTCAGAG+TGG 0.585441 2.4:-54624979 MS.gene073372:CDS
TTTGGGAATCAGAGAAACCA+TGG 0.602265 2.4:+54625277 None:intergenic
ATTGAATCTTGCACAAACCA+AGG 0.602352 2.4:-54624419 MS.gene073372:CDS
GGCCATTGCTAAAACACCAA+GGG 0.609965 2.4:-54624635 MS.gene073372:CDS
TGAGATAGAGAAGGGTTGAA+CGG 0.624735 2.4:+54625511 None:intergenic
GACAGGCAACTTGCCTGAGT+TGG 0.629550 2.4:-54624902 MS.gene073372:CDS
CATACCAAGAGCCTCAGTTG+TGG 0.635286 2.4:-54624584 MS.gene073372:CDS
ACATAGGGTTCTTAGTGACA+AGG 0.636619 2.4:+54625139 None:intergenic
AGAGGTTGAATCTGAAGTGT+TGG 0.638939 2.4:+54625428 None:intergenic
ACTGAGAAAATTGATTGTGA+AGG 0.638960 2.4:+54624850 None:intergenic
AATACGCGCTGTCATTGCAA+AGG 0.640391 2.4:-54625256 MS.gene073372:CDS
GGATCGCAGGAAAGCAAGCG+TGG 0.641477 2.4:+54625231 None:intergenic
TTTATTTGGAAGAAGTAGCG+TGG 0.642616 2.4:-54625010 MS.gene073372:CDS
GAAATGAACATTGTAAGTGG+AGG 0.651609 2.4:+54625344 None:intergenic
GTATATAAATCGGTTTAAGG+AGG 0.668406 2.4:-54624476 MS.gene073372:CDS
CAGAAGATATTCCACAACTG+AGG 0.677963 2.4:+54624573 None:intergenic
TGGCCATTGCTAAAACACCA+AGG 0.690744 2.4:-54624636 MS.gene073372:CDS
AATATTGCAAGATTGCTTCG+GGG 0.721927 2.4:-54624943 MS.gene073372:CDS
ATGGATGTTAACATACACTG+AGG 0.775832 2.4:+54624715 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTATTTATAAACCAATTCAT+AGG + chr2.4:54624850-54624869 None:intergenic 20.0%
!! TCTATGACATGTATATAAAT+CGG - chr2.4:54625441-54625460 MS.gene073372:CDS 20.0%
!!! AATATTAAGTTTTTCATGAC+AGG - chr2.4:54625008-54625027 MS.gene073372:CDS 20.0%
!!! TTTCTTCATAAAGCTTTAAT+AGG + chr2.4:54625487-54625506 None:intergenic 20.0%
! AATTGCAATCCAACTTTATT+TGG - chr2.4:54624903-54624922 MS.gene073372:CDS 25.0%
! GAGAGTAAAAATTGAAACTT+TGG + chr2.4:54624738-54624757 None:intergenic 25.0%
! TAAATATTGCAAGATTGCTT+CGG - chr2.4:54624982-54625001 MS.gene073372:CDS 25.0%
! TATAAACCAATTCATAGGTT+GGG + chr2.4:54624845-54624864 None:intergenic 25.0%
! TGAAAGAGTTAAAGGATTTA+GGG - chr2.4:54625048-54625067 MS.gene073372:CDS 25.0%
! TTATAAACCAATTCATAGGT+TGG + chr2.4:54624846-54624865 None:intergenic 25.0%
!! AGTTGATACCTTTAAGAAAT+GGG - chr2.4:54625148-54625167 MS.gene073372:CDS 25.0%
!! CATGTATATAAATCGGTTTA+AGG - chr2.4:54625448-54625467 MS.gene073372:CDS 25.0%
!! TTTCAATTTTTACTCTCCAA+AGG - chr2.4:54624741-54624760 MS.gene073372:CDS 25.0%
!!! AAAGTTTTGAAGCAAATTGT+GGG + chr2.4:54624563-54624582 None:intergenic 25.0%
!!! AAGTTGATACCTTTAAGAAA+TGG - chr2.4:54625147-54625166 MS.gene073372:CDS 25.0%
!!! CACTGAGTTTATTTTATCAA+TGG + chr2.4:54625234-54625253 None:intergenic 25.0%
!!! TATCAACTTTTTCATTCCAT+CGG + chr2.4:54625136-54625155 None:intergenic 25.0%
AAATAGTGAGAAAAGGGTAA+TGG + chr2.4:54624474-54624493 None:intergenic 30.0%
AAATATTGCAAGATTGCTTC+GGG - chr2.4:54624983-54625002 MS.gene073372:CDS 30.0%
ACTGAGAAAATTGATTGTGA+AGG + chr2.4:54625080-54625099 None:intergenic 30.0%
AGAATCCAAAATTGTGAATG+AGG + chr2.4:54624539-54624558 None:intergenic 30.0%
CTACTTCTTCCAAATAAAGT+TGG + chr2.4:54624915-54624934 None:intergenic 30.0%
CTTGAAATGAACATTGTAAG+TGG + chr2.4:54624589-54624608 None:intergenic 30.0%
GTGAAAGAGTTAAAGGATTT+AGG - chr2.4:54625047-54625066 MS.gene073372:CDS 30.0%
! GGTTTCGGATAAATATGTTT+TGG + chr2.4:54625114-54625133 None:intergenic 30.0%
! GTATATAAATCGGTTTAAGG+AGG - chr2.4:54625451-54625470 MS.gene073372:CDS 30.0%
! GTTGATACCTTTAAGAAATG+GGG - chr2.4:54625149-54625168 MS.gene073372:CDS 30.0%
! TCATACCTCATTCACAATTT+TGG - chr2.4:54624531-54624550 MS.gene073372:CDS 30.0%
!! ATCAAATTGTTGATTCAGAG+TGG - chr2.4:54624948-54624967 MS.gene073372:CDS 30.0%
!!! AAAAGGGTAATGGAGTTTTT+GGG + chr2.4:54624464-54624483 None:intergenic 30.0%
!!! AAGTTTTGAAGCAAATTGTG+GGG + chr2.4:54624562-54624581 None:intergenic 30.0%
!!! ATCAACTTTTTCATTCCATC+GGG + chr2.4:54625135-54625154 None:intergenic 30.0%
!!! GAAAGTTTTGAAGCAAATTG+TGG + chr2.4:54624564-54624583 None:intergenic 30.0%
AAACTTGCAGTAAGGAACAT+AGG + chr2.4:54624807-54624826 None:intergenic 35.0%
AACTTGCAGTAAGGAACATA+GGG + chr2.4:54624806-54624825 None:intergenic 35.0%
AAGAAGTTGAGAACTGAATC+AGG + chr2.4:54624624-54624643 None:intergenic 35.0%
AATAGTCCCAACCTATGAAT+TGG - chr2.4:54624836-54624855 MS.gene073372:CDS 35.0%
AATATTGCAAGATTGCTTCG+GGG - chr2.4:54624984-54625003 MS.gene073372:CDS 35.0%
ATGGATGTTAACATACACTG+AGG + chr2.4:54625215-54625234 None:intergenic 35.0%
ATTGAATCTTGCACAAACCA+AGG - chr2.4:54625508-54625527 MS.gene073372:CDS 35.0%
GAAATGAACATTGTAAGTGG+AGG + chr2.4:54624586-54624605 None:intergenic 35.0%
GAAGAGAGGTTTGCATAAAA+AGG - chr2.4:54625376-54625395 MS.gene073372:CDS 35.0%
GTCTCATCAGTGACTATAAA+CGG + chr2.4:54625419-54625438 None:intergenic 35.0%
GTGGAGAAATAGTGAGAAAA+GGG + chr2.4:54624480-54624499 None:intergenic 35.0%
TAAGGTCTTGAGATAGAGAA+GGG + chr2.4:54624427-54624446 None:intergenic 35.0%
TATGTTCCTTACTGCAAGTT+TGG - chr2.4:54624806-54624825 MS.gene073372:CDS 35.0%
TTAAGGTCTTGAGATAGAGA+AGG + chr2.4:54624428-54624447 None:intergenic 35.0%
TTTAACTCTTTCACCAACTC+AGG + chr2.4:54625041-54625060 None:intergenic 35.0%
TTTATTTGGAAGAAGTAGCG+TGG - chr2.4:54624917-54624936 MS.gene073372:CDS 35.0%
! AAACTCAGTGATGAGCTTTT+GGG - chr2.4:54625244-54625263 MS.gene073372:CDS 35.0%
! CTCAACTTCTTTAGAAACCA+TGG - chr2.4:54624633-54624652 MS.gene073372:CDS 35.0%
! TAAACTCAGTGATGAGCTTT+TGG - chr2.4:54625243-54625262 MS.gene073372:CDS 35.0%
! TGAGAACTGAATCAGGTTTT+CGG + chr2.4:54624617-54624636 None:intergenic 35.0%
! TTTTTCATTCCATCGGGTTT+CGG + chr2.4:54625129-54625148 None:intergenic 35.0%
!! TGAGTTGGTGAAAGAGTTAA+AGG - chr2.4:54625040-54625059 MS.gene073372:CDS 35.0%
!!! GAAAAGGGTAATGGAGTTTT+TGG + chr2.4:54624465-54624484 None:intergenic 35.0%
!!! TATCATGCCAGTTTTTTCCT+TGG + chr2.4:54625528-54625547 None:intergenic 35.0%
ACATAGGGTTCTTAGTGACA+AGG + chr2.4:54624791-54624810 None:intergenic 40.0%
CAGAAGATATTCCACAACTG+AGG + chr2.4:54625357-54625376 None:intergenic 40.0%
CATATTTATCCGAAACCCGA+TGG - chr2.4:54625117-54625136 MS.gene073372:CDS 40.0%
GCACAAACCAAGGAAAAAAC+TGG - chr2.4:54625518-54625537 MS.gene073372:CDS 40.0%
GGTGGAGAAATAGTGAGAAA+AGG + chr2.4:54624481-54624500 None:intergenic 40.0%
TCTTGTCCAAACTTGCAGTA+AGG + chr2.4:54624815-54624834 None:intergenic 40.0%
TGAGATAGAGAAGGGTTGAA+CGG + chr2.4:54624419-54624438 None:intergenic 40.0%
TTTGGGAATCAGAGAAACCA+TGG + chr2.4:54624653-54624672 None:intergenic 40.0%
! AAACTTTGGCAACACCCTTT+TGG + chr2.4:54624724-54624743 None:intergenic 40.0%
! AGAGGTTGAATCTGAAGTGT+TGG + chr2.4:54624502-54624521 None:intergenic 40.0%
! ATACCTTTAAGAAATGGGGC+TGG - chr2.4:54625153-54625172 MS.gene073372:CDS 40.0%
! CTAAAACACCAAGGGTTTTG+GGG - chr2.4:54625300-54625319 MS.gene073372:CDS 40.0%
! GAGAACTGAATCAGGTTTTC+GGG + chr2.4:54624616-54624635 None:intergenic 40.0%
! GCTAAAACACCAAGGGTTTT+GGG - chr2.4:54625299-54625318 MS.gene073372:CDS 40.0%
! GTGGAATATCTTCTGAAGAG+AGG - chr2.4:54625362-54625381 MS.gene073372:CDS 40.0%
! TGCTAAAACACCAAGGGTTT+TGG - chr2.4:54625298-54625317 MS.gene073372:CDS 40.0%
!! AGCTTTTGGGTCAATCAGTT+GGG - chr2.4:54625257-54625276 MS.gene073372:CDS 40.0%
!! TAAAACACCAAGGGTTTTGG+GGG - chr2.4:54625301-54625320 MS.gene073372:CDS 40.0%
!! TGGGTTTGGTGAGAAAGTTA+AGG + chr2.4:54624445-54624464 None:intergenic 40.0%
!!! AACCCTTGGTGTTTTAGCAA+TGG + chr2.4:54625297-54625316 None:intergenic 40.0%
!!! GGTAATGGAGTTTTTGGGTT+TGG + chr2.4:54624459-54624478 None:intergenic 40.0%
AATACGCGCTGTCATTGCAA+AGG - chr2.4:54624671-54624690 MS.gene073372:CDS 45.0%
AGACCAGCCCCATTTCTTAA+AGG + chr2.4:54625159-54625178 None:intergenic 45.0%
GAGGTATGAGACAGCAAAAG+AGG + chr2.4:54624520-54624539 None:intergenic 45.0%
GGCCATTGCTAAAACACCAA+GGG - chr2.4:54625292-54625311 MS.gene073372:CDS 45.0%
TATTCCACAACTGAGGCTCT+TGG + chr2.4:54625350-54625369 None:intergenic 45.0%
TGCAATGACAGCGCGTATTT+GGG + chr2.4:54624670-54624689 None:intergenic 45.0%
TGGCCATTGCTAAAACACCA+AGG - chr2.4:54625291-54625310 MS.gene073372:CDS 45.0%
TTGCAATGACAGCGCGTATT+TGG + chr2.4:54624671-54624690 None:intergenic 45.0%
TTGGGTCAATCAGTTGGGTT+GGG - chr2.4:54625262-54625281 MS.gene073372:CDS 45.0%
TTTGGGTCAATCAGTTGGGT+TGG - chr2.4:54625261-54625280 MS.gene073372:CDS 45.0%
! TTTGGCAACACCCTTTTGGA+GGG + chr2.4:54624720-54624739 None:intergenic 45.0%
!! GAGCTTTTGGGTCAATCAGT+TGG - chr2.4:54625256-54625275 MS.gene073372:CDS 45.0%
!! GGTTGAATCTGAAGTGTTGG+TGG + chr2.4:54624499-54624518 None:intergenic 45.0%
!! GTCAGAGTTAGAAGCACCTT+TGG + chr2.4:54624760-54624779 None:intergenic 45.0%
CATACCAAGAGCCTCAGTTG+TGG - chr2.4:54625343-54625362 MS.gene073372:CDS 50.0%
TATGATCCTTCGCTCCAGAC+TGG + chr2.4:54625327-54625346 None:intergenic 50.0%
TTCCTGCGATCCCTCCAAAA+GGG - chr2.4:54624707-54624726 MS.gene073372:CDS 50.0%
TTTCCTGCGATCCCTCCAAA+AGG - chr2.4:54624706-54624725 MS.gene073372:CDS 50.0%
! CTTTGGCAACACCCTTTTGG+AGG + chr2.4:54624721-54624740 None:intergenic 50.0%
!! TCAGTTGGGTTGGGATGCTA+TGG - chr2.4:54625271-54625290 MS.gene073372:CDS 50.0%
GACAGGCAACTTGCCTGAGT+TGG - chr2.4:54625025-54625044 MS.gene073372:CDS 55.0%
GGATCGCAGGAAAGCAAGCG+TGG + chr2.4:54624699-54624718 None:intergenic 60.0%
! AGACTGGCCCCCAAAACCCT+TGG + chr2.4:54625311-54625330 None:intergenic 60.0%
!! CACCCTTTTGGAGGGATCGC+AGG + chr2.4:54624712-54624731 None:intergenic 60.0%
!!! AAGGGTTTTGGGGGCCAGTC+TGG - chr2.4:54625310-54625329 MS.gene073372:CDS 60.0%
! TGGGGGCCAGTCTGGAGCGA+AGG - chr2.4:54625318-54625337 MS.gene073372:CDS 70.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 54624399 54625550 54624399 ID=MS.gene073372
chr2.4 mRNA 54624399 54625550 54624399 ID=MS.gene073372.t1;Parent=MS.gene073372
chr2.4 exon 54624399 54625550 54624399 ID=MS.gene073372.t1.exon1;Parent=MS.gene073372.t1
chr2.4 CDS 54624399 54625550 54624399 ID=cds.MS.gene073372.t1;Parent=MS.gene073372.t1
Gene Sequence

>MS.gene073372

ATGTTTAACACTCATCTCCGTTCAACCCTTCTCTATCTCAAGACCTTAACTTTCTCACCAAACCCAAAAACTCCATTACCCTTTTCTCACTATTTCTCCACCAACACTTCAGATTCAACCTCTTTTGCTGTCTCATACCTCATTCACAATTTTGGATTCTCCCCACAATTTGCTTCAAAACTTTCCTCCACTTACAATGTTCATTTCAAGACTGCCCGAAAACCTGATTCAGTTCTCAACTTCTTTAGAAACCATGGTTTCTCTGATTCCCAAATACGCGCTGTCATTGCAAAGGAACCACGCTTGCTTTCCTGCGATCCCTCCAAAAGGGTGTTGCCAAAGTTTCAATTTTTACTCTCCAAAGGTGCTTCTAACTCTGACATTGTTAACCTTGTCACTAAGAACCCTATGTTCCTTACTGCAAGTTTGGACAAGAAAATAGTCCCAACCTATGAATTGGTTTATAAATACTTGCAATCTGATAAACACATTCTTGCTTTGTTGAATTGCAATCCAACTTTATTTGGAAGAAGTAGCGTGGAACATAACATCAAATTGTTGATTCAGAGTGGAGTGACAGACATAAATATTGCAAGATTGCTTCGGGGCAATATTAAGTTTTTCATGACAGGCAACTTGCCTGAGTTGGTGAAAGAGTTAAAGGATTTAGGGTTTCATCCTTCACAATCAATTTTCTCAGTAGCATTGATTGCCAAAACATATTTATCCGAAACCCGATGGAATGAAAAAGTTGATACCTTTAAGAAATGGGGCTGGTCTGATGAAGATGTTCTTGAAGCATTTAAAAAGCAACCTCAGTGTATGTTAACATCCATTGATAAAATAAACTCAGTGATGAGCTTTTGGGTCAATCAGTTGGGTTGGGATGCTATGGCCATTGCTAAAACACCAAGGGTTTTGGGGGCCAGTCTGGAGCGAAGGATCATACCAAGAGCCTCAGTTGTGGAATATCTTCTGAAGAGAGGTTTGCATAAAAAGGAAGCAAGTTTAACTTCTCCGTTTATAGTCACTGATGAGACATTCTATGACATGTATATAAATCGGTTTAAGGAGGAGTCTTCTTACCTATTAAAGCTTTATGAAGAAAAATTGAATCTTGCACAAACCAAGGAAAAAACTGGCATGATATGA
Protein sequence

>MS.gene073372.t1

MFNTHLRSTLLYLKTLTFSPNPKTPLPFSHYFSTNTSDSTSFAVSYLIHNFGFSPQFASKLSSTYNVHFKTARKPDSVLNFFRNHGFSDSQIRAVIAKEPRLLSCDPSKRVLPKFQFLLSKGASNSDIVNLVTKNPMFLTASLDKKIVPTYELVYKYLQSDKHILALLNCNPTLFGRSSVEHNIKLLIQSGVTDINIARLLRGNIKFFMTGNLPELVKELKDLGFHPSQSIFSVALIAKTYLSETRWNEKVDTFKKWGWSDEDVLEAFKKQPQCMLTSIDKINSVMSFWVNQLGWDAMAIAKTPRVLGASLERRIIPRASVVEYLLKRGLHKKEASLTSPFIVTDETFYDMYINRFKEESSYLLKLYEEKLNLAQTKEKTGMI