AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene073378

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene073378.t1 MTR_2g437170 67.347 392 75 3 15 355 23 412 0.0 514
MS.gene073378.t1 MTR_2g437150 63.708 383 86 3 15 346 23 403 9.31e-167 471
MS.gene073378.t1 MTR_2g437160 60.794 403 101 5 1 349 12 411 2.05e-159 453
MS.gene073378.t1 MTR_2g437960 60.976 410 101 5 1 355 1 406 5.26e-158 449
MS.gene073378.t1 MTR_2g437960 60.934 407 100 5 1 352 1 403 1.33e-155 444
MS.gene073378.t1 MTR_2g437940 61.780 382 107 5 1 353 1 372 1.69e-152 434
MS.gene073378.t1 MTR_2g437100 59.383 389 102 4 1 333 7 395 1.44e-148 425
MS.gene073378.t1 MTR_2g437180 57.816 403 103 6 1 346 1 393 6.43e-147 421
MS.gene073378.t1 MTR_2g437120 58.209 402 104 5 1 345 1 395 4.82e-146 419
MS.gene073378.t1 MTR_2g438010 58.201 378 108 3 22 353 48 421 5.06e-145 417
MS.gene073378.t1 MTR_2g437160 61.345 357 82 4 1 349 12 320 1.98e-139 399
MS.gene073378.t1 MTR_2g437990 57.294 377 110 4 22 352 28 399 4.85e-136 394
MS.gene073378.t1 MTR_2g076320 56.878 378 113 3 22 353 28 401 2.20e-135 392
MS.gene073378.t1 MTR_2g437130 52.850 386 120 6 13 346 9 384 1.08e-120 353
MS.gene073378.t1 MTR_2g437240 66.065 277 82 2 87 353 142 416 1.77e-118 349
MS.gene073378.t1 MTR_2g437240 38.854 157 71 7 24 168 18 161 5.40e-15 75.9
MS.gene073378.t1 MTR_2g437200 64.982 277 77 2 67 333 132 398 1.59e-113 336
MS.gene073378.t1 MTR_2g437200 42.138 159 65 5 30 173 20 166 4.22e-21 94.0
MS.gene073378.t1 MTR_2g438020 69.198 237 70 1 116 352 220 453 2.64e-106 320
MS.gene073378.t1 MTR_2g438020 52.113 71 32 1 45 115 70 138 1.95e-14 74.7
MS.gene073378.t1 MTR_2g437020 45.293 393 148 6 1 341 1 378 1.19e-95 290
MS.gene073378.t1 MTR_2g436440 43.622 392 154 6 6 345 12 388 6.47e-94 285
MS.gene073378.t1 MTR_2g437080 43.514 370 150 4 26 345 22 382 5.78e-93 283
MS.gene073378.t1 MTR_2g437060 44.414 367 148 4 21 341 37 393 1.56e-91 280
MS.gene073378.t1 MTR_2g437030 45.170 352 144 2 40 345 120 468 2.26e-91 281
MS.gene073378.t1 MTR_2g437040 43.417 357 145 4 39 345 33 382 8.86e-85 262
MS.gene073378.t1 MTR_2g436400 42.733 344 148 2 40 337 41 381 1.17e-84 261
MS.gene073378.t1 MTR_2g437260 40.390 359 157 5 30 340 24 373 2.68e-81 253
MS.gene073378.t1 MTR_4g119550 39.943 348 157 4 41 341 46 388 1.16e-79 249
MS.gene073378.t1 MTR_4g120380 40.828 338 155 4 36 330 34 369 8.11e-75 236
MS.gene073378.t1 MTR_2g436460 42.229 341 149 7 39 334 40 377 4.91e-70 224
MS.gene073378.t1 MTR_4g120380 41.066 319 143 4 36 311 34 350 3.73e-69 223
MS.gene073378.t1 MTR_4g120380 31.579 171 95 6 145 298 251 416 6.28e-14 72.8
MS.gene073378.t1 MTR_4g119580 39.233 339 155 4 38 330 36 369 1.18e-68 220
MS.gene073378.t1 MTR_2g437090 51.462 171 83 0 176 346 1 171 3.22e-58 186
MS.gene073378.t1 MTR_2g019840 35.310 371 172 9 23 333 9 371 2.71e-54 183
MS.gene073378.t1 MTR_2g019810 36.842 342 149 8 46 333 31 359 1.33e-53 181
MS.gene073378.t1 MTR_4g119570 36.279 215 101 3 115 329 49 227 2.43e-36 132
MS.gene073378.t1 MTR_3g450500 23.836 365 224 5 15 330 10 369 2.59e-29 116
MS.gene073378.t1 MTR_4g007490 25.291 344 207 5 35 330 26 367 4.47e-28 113
MS.gene073378.t1 MTR_3g085240 56.522 92 23 1 233 324 174 248 4.27e-23 97.1
MS.gene073378.t1 MTR_4g049400 43.333 120 60 3 1 114 1 118 5.66e-23 96.3
MS.gene073378.t1 MTR_2g436380 60.000 60 24 0 176 235 1 60 2.65e-16 78.6
MS.gene073378.t1 MTR_2g436370 50.000 76 38 0 40 115 40 115 3.21e-16 77.0
MS.gene073378.t1 MTR_8g080990 25.882 255 175 4 85 327 116 368 6.11e-15 75.5
MS.gene073378.t1 MTR_8g081000 23.077 312 224 5 33 330 75 384 8.13e-15 75.5
MS.gene073378.t1 MTR_8g081000 23.077 312 224 5 33 330 75 384 8.40e-15 75.5
MS.gene073378.t1 MTR_8g081000 23.077 312 224 5 33 330 75 384 9.64e-15 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene073378.t1 AT5G07900 28.686 373 202 9 16 330 33 399 1.55e-37 139
MS.gene073378.t1 AT1G21150 26.061 330 193 5 48 328 57 384 2.89e-28 114
MS.gene073378.t1 AT1G21150 25.749 334 197 5 44 328 17 348 2.89e-28 113
MS.gene073378.t1 AT1G21150 26.061 330 193 5 48 328 121 448 8.91e-28 113
MS.gene073378.t1 AT5G64950 26.513 347 198 8 39 330 31 375 1.58e-21 95.1
MS.gene073378.t1 AT1G61980 24.857 350 179 11 48 316 53 399 8.28e-15 75.5
MS.gene073378.t1 AT1G61980 24.857 350 179 11 48 316 53 399 8.28e-15 75.5
MS.gene073378.t1 AT1G61980 24.857 350 179 11 48 316 53 399 8.28e-15 75.5
MS.gene073378.t1 AT1G61970 22.571 350 187 9 48 316 53 399 3.92e-12 67.4
MS.gene073378.t1 AT1G61970 22.571 350 187 9 48 316 53 399 3.92e-12 67.4
MS.gene073378.t1 AT1G61970 22.571 350 187 9 48 316 53 399 3.92e-12 67.4
MS.gene073378.t1 AT1G61970 22.571 350 187 9 48 316 53 399 3.92e-12 67.4
MS.gene073378.t1 AT1G61970 22.571 350 187 9 48 316 53 399 3.92e-12 67.4
MS.gene073378.t1 AT1G61970 22.571 350 187 9 48 316 53 399 3.92e-12 67.4
MS.gene073378.t1 AT1G61970 22.571 350 187 9 48 316 53 399 3.92e-12 67.4

Find 60 sgRNAs with CRISPR-Local

Find 90 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGAACCATTTCGTTATTC+TGG 0.141446 2.4:-54557313 MS.gene073378:CDS
ATCAATTTAATGTCTGATTT+TGG 0.143567 2.4:-54557775 MS.gene073378:CDS
TCATACCTCATCAACAATTT+TGG 0.165317 2.4:-54558201 MS.gene073378:CDS
TTCAATTGATAAGATTAATT+TGG 0.211307 2.4:-54557494 MS.gene073378:CDS
TGGAGGAAGTTAAGAGTTTA+GGG 0.232380 2.4:-54557675 MS.gene073378:CDS
TTGGAGGAAGTTAAGAGTTT+AGG 0.257551 2.4:-54557676 MS.gene073378:CDS
ATTCCTTGGCACTTGCTAAA+AGG 0.292312 2.4:-54557438 MS.gene073378:CDS
AAGAAGGTGAGAACTGAATT+AGG 0.306086 2.4:+54558111 None:intergenic
AAAGGATTTGATTAAGTCAT+TGG 0.323129 2.4:-54557695 MS.gene073378:CDS
AATTGATATTAGACACAATA+AGG 0.329025 2.4:+54557791 None:intergenic
GATCCTTGGACGAATACTTT+TGG 0.330015 2.4:-54557649 MS.gene073378:CDS
TAGACCAACCCCATTTCTTA+AGG 0.338165 2.4:+54557566 None:intergenic
CAGTCAAGGCCATCTACATT+TGG 0.353370 2.4:-54557721 MS.gene073378:CDS
ATTAGACACAATAAGGTGAT+AGG 0.358420 2.4:+54557798 None:intergenic
CAAGTTACACATTCGGTAGA+TGG 0.370763 2.4:+54557172 None:intergenic
AAGTTGATGCCCTTAAGAAA+TGG 0.388575 2.4:-54557576 MS.gene073378:CDS
TAGTATCTGATGAGTGAAAT+CGG 0.388813 2.4:+54558276 None:intergenic
AGAGTTTAGGGTTTGATCCT+TGG 0.397034 2.4:-54557663 MS.gene073378:CDS
AGTTGATGCCCTTAAGAAAT+GGG 0.397811 2.4:-54557575 MS.gene073378:CDS
TTGAACCATTTCGTTATTCT+GGG 0.398296 2.4:-54557312 MS.gene073378:CDS
TCCTTTGAACCAAATGTAGA+TGG 0.407709 2.4:+54557712 None:intergenic
GCAAACAATGGTATCCTTGT+CGG 0.427133 2.4:+54557855 None:intergenic
GCCATCTACATTTGGTTCAA+AGG 0.443477 2.4:-54557713 MS.gene073378:CDS
AGACCAACCCCATTTCTTAA+GGG 0.447273 2.4:+54557567 None:intergenic
AACAATTGTTCCAAGGGCAT+TGG 0.458416 2.4:-54557386 MS.gene073378:CDS
TCAATTGGGTGGGAATTCCT+TGG 0.472262 2.4:-54557452 MS.gene073378:CDS
TTTCATCACAACCCCACAAA+AGG 0.473339 2.4:-54558026 MS.gene073378:intron
CTGCAATATCTTGTGATGAA+AGG 0.485086 2.4:-54557361 MS.gene073378:CDS
ATCTTGTGATGAAAGGTTTG+AGG 0.509536 2.4:-54557354 MS.gene073378:CDS
TGCAGAAAACAATTGTTCCA+AGG 0.522766 2.4:-54557393 MS.gene073378:CDS
TGTTTAACAAGTTACACATT+CGG 0.526635 2.4:+54557165 None:intergenic
CAAGCATTTAGGATGCATCC+TGG 0.527087 2.4:-54557529 MS.gene073378:CDS
ACACATTCGGTAGATGGCAT+TGG 0.528449 2.4:+54557178 None:intergenic
TTGTTTGCTTAATTCGATGT+TGG 0.530080 2.4:-54557840 MS.gene073378:CDS
GCAGAAAACAATTGTTCCAA+GGG 0.535861 2.4:-54557392 MS.gene073378:CDS
CAAAGCTTTCAACAACAAGC+AGG 0.537532 2.4:-54558157 MS.gene073378:CDS
AGTATCTGATGAGTGAAATC+GGG 0.544517 2.4:+54558277 None:intergenic
GAGACCTAAAACTACATTTG+TGG 0.545867 2.4:+54558328 None:intergenic
AAAGCTTTGAGAGCAGATTG+AGG 0.549590 2.4:+54558171 None:intergenic
TATTGCAGAACCAATGCCCT+TGG 0.552410 2.4:+54557376 None:intergenic
TTTGGGTTAATCAATTGGGT+GGG 0.559000 2.4:-54557462 MS.gene073378:CDS
TCGGGAACAACAAGTGTTGA+GGG 0.560234 2.4:+54558295 None:intergenic
AGAAACCAAAATTGTTGATG+AGG 0.561539 2.4:+54558196 None:intergenic
ATCGGGAACAACAAGTGTTG+AGG 0.562201 2.4:+54558294 None:intergenic
TTAGACACAATAAGGTGATA+GGG 0.570881 2.4:+54557799 None:intergenic
GGATTTGATTAAGTCATTGG+AGG 0.571043 2.4:-54557692 MS.gene073378:CDS
CTCACCTTCTTAGAAAACCA+TGG 0.576168 2.4:-54558099 MS.gene073378:CDS
TTGCTAGCTCGCTTCAGTCA+AGG 0.593225 2.4:-54557735 MS.gene073378:CDS
ATTCCAAAAGTATTCGTCCA+AGG 0.607263 2.4:+54557646 None:intergenic
ATGAGGTATGATACAGCGAA+TGG 0.607723 2.4:+54558213 None:intergenic
GAGAAACAATTTCTTCAACA+TGG 0.614078 2.4:+54558353 None:intergenic
ATGCCCTTAAGAAATGGGGT+TGG 0.630132 2.4:-54557570 MS.gene073378:CDS
ACCTAAAACTACATTTGTGG+CGG 0.636797 2.4:+54558331 None:intergenic
GTTGATGCCCTTAAGAAATG+GGG 0.641680 2.4:-54557574 MS.gene073378:CDS
ATTGAAGTCAACATGAAACC+AGG 0.642061 2.4:+54557511 None:intergenic
ACATCGAATTAAGCAAACAA+TGG 0.642451 2.4:+54557843 None:intergenic
TGAGGTATGATACAGCGAAT+GGG 0.657928 2.4:+54558214 None:intergenic
TAGGTTCTTTAAAACCGACA+AGG 0.672846 2.4:-54557869 MS.gene073378:CDS
GCATACACAAAAGAGAACAA+TGG 0.682398 2.4:-54557205 MS.gene073378:CDS
GGTTGTGATGAAAGTAACCA+AGG 0.698597 2.4:+54558036 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTAACAATTGAAAAAGA+GGG + chr2.4:54557632-54557651 None:intergenic 15.0%
!! TTCAATTGATAAGATTAATT+TGG - chr2.4:54558025-54558044 MS.gene073378:intron 15.0%
!! AAACTTGAATCAAAAATATG+TGG + chr2.4:54558107-54558126 None:intergenic 20.0%
!! AAAGTTTGAGTAAAAAACTT+TGG - chr2.4:54557913-54557932 MS.gene073378:intron 20.0%
!! AAGTTTGAGTAAAAAACTTT+GGG - chr2.4:54557914-54557933 MS.gene073378:intron 20.0%
!! AATTGATATTAGACACAATA+AGG + chr2.4:54557731-54557750 None:intergenic 20.0%
!! CTATTTAACAATTGAAAAAG+AGG + chr2.4:54557633-54557652 None:intergenic 20.0%
!!! ATCAATTTAATGTCTGATTT+TGG - chr2.4:54557744-54557763 MS.gene073378:CDS 20.0%
!!! CTCTTTTTCAATTGTTAAAT+AGG - chr2.4:54557631-54557650 MS.gene073378:CDS 20.0%
!!! TTTCAATTTTTTCTATCCAA+TGG - chr2.4:54557528-54557547 MS.gene073378:CDS 20.0%
! AAAGGATTTGATTAAGTCAT+TGG - chr2.4:54557824-54557843 MS.gene073378:CDS 25.0%
!!! AGTTTTTGGGTTAATCAATT+GGG - chr2.4:54558053-54558072 MS.gene073378:CDS 25.0%
!!! TAATTTGGTGATGAGTTTTT+GGG - chr2.4:54558040-54558059 MS.gene073378:CDS 25.0%
!!! TTAATTTGGTGATGAGTTTT+TGG - chr2.4:54558039-54558058 MS.gene073378:CDS 25.0%
AAGCTACTTCGTAAAATTCT+AGG + chr2.4:54557594-54557613 None:intergenic 30.0%
ACATCGAATTAAGCAAACAA+TGG + chr2.4:54557679-54557698 None:intergenic 30.0%
AGAAACCAAAATTGTTGATG+AGG + chr2.4:54557326-54557345 None:intergenic 30.0%
AGCTACTTCGTAAAATTCTA+GGG + chr2.4:54557593-54557612 None:intergenic 30.0%
ATTAGACACAATAAGGTGAT+AGG + chr2.4:54557724-54557743 None:intergenic 30.0%
TAACGATGAAACAATATCAG+AGG + chr2.4:54557562-54557581 None:intergenic 30.0%
TAGTATCTGATGAGTGAAAT+CGG + chr2.4:54557246-54557265 None:intergenic 30.0%
TCATCATCAAAAAAGAACCT+TGG - chr2.4:54557466-54557485 MS.gene073378:CDS 30.0%
TTAGACACAATAAGGTGATA+GGG + chr2.4:54557723-54557742 None:intergenic 30.0%
TTGAACCATTTCGTTATTCT+GGG - chr2.4:54558207-54558226 MS.gene073378:CDS 30.0%
TTGTTTGCTTAATTCGATGT+TGG - chr2.4:54557679-54557698 MS.gene073378:CDS 30.0%
! AACTGAATTAGGCTTTTCAA+GGG + chr2.4:54557400-54557419 None:intergenic 30.0%
! ACTTTAGCAATAACCTTTTG+TGG + chr2.4:54557509-54557528 None:intergenic 30.0%
! ATTTTCCCAGAATAACGAAA+TGG + chr2.4:54558215-54558234 None:intergenic 30.0%
! CTTTAGCAATAACCTTTTGT+GGG + chr2.4:54557508-54557527 None:intergenic 30.0%
! TAGAATTTTACGAAGTAGCT+TGG - chr2.4:54557593-54557612 MS.gene073378:CDS 30.0%
! TCATACCTCATCAACAATTT+TGG - chr2.4:54557318-54557337 MS.gene073378:CDS 30.0%
! TTTAGCAATAACCTTTTGTG+GGG + chr2.4:54557507-54557526 None:intergenic 30.0%
!! AAAACCATGGTTTTCTAAGA+AGG + chr2.4:54557427-54557446 None:intergenic 30.0%
!! CAAGTTTGTTTTCAGCTTTA+AGG - chr2.4:54558244-54558263 MS.gene073378:CDS 30.0%
!!! AAGCTGTTTTTCAAGCATTT+AGG - chr2.4:54557979-54557998 MS.gene073378:intron 30.0%
!!! GAATACTTTTGGAATTGCTT+TGG - chr2.4:54557881-54557900 MS.gene073378:intron 30.0%
!!! GAGTTTTTGGGTTAATCAAT+TGG - chr2.4:54558052-54558071 MS.gene073378:CDS 30.0%
AAGAAGGTGAGAACTGAATT+AGG + chr2.4:54557411-54557430 None:intergenic 35.0%
ACCTAAAACTACATTTGTGG+CGG + chr2.4:54557191-54557210 None:intergenic 35.0%
AGTATCTGATGAGTGAAATC+GGG + chr2.4:54557245-54557264 None:intergenic 35.0%
ATCTTGTGATGAAAGGTTTG+AGG - chr2.4:54558165-54558184 MS.gene073378:CDS 35.0%
ATTGAAGTCAACATGAAACC+AGG + chr2.4:54558011-54558030 None:intergenic 35.0%
CTGCAATATCTTGTGATGAA+AGG - chr2.4:54558158-54558177 MS.gene073378:CDS 35.0%
GAGACCTAAAACTACATTTG+TGG + chr2.4:54557194-54557213 None:intergenic 35.0%
GCAGAAAACAATTGTTCCAA+GGG - chr2.4:54558127-54558146 MS.gene073378:CDS 35.0%
GCATACACAAAAGAGAACAA+TGG - chr2.4:54558314-54558333 MS.gene073378:CDS 35.0%
GGATTTGATTAAGTCATTGG+AGG - chr2.4:54557827-54557846 MS.gene073378:CDS 35.0%
GTTGAACCATTTCGTTATTC+TGG - chr2.4:54558206-54558225 MS.gene073378:CDS 35.0%
TCCTTTGAACCAAATGTAGA+TGG + chr2.4:54557810-54557829 None:intergenic 35.0%
TGCAGAAAACAATTGTTCCA+AGG - chr2.4:54558126-54558145 MS.gene073378:CDS 35.0%
TGGAGGAAGTTAAGAGTTTA+GGG - chr2.4:54557844-54557863 MS.gene073378:CDS 35.0%
TTGGAGGAAGTTAAGAGTTT+AGG - chr2.4:54557843-54557862 MS.gene073378:CDS 35.0%
! AGTTGATGCCCTTAAGAAAT+GGG - chr2.4:54557944-54557963 MS.gene073378:intron 35.0%
! GAACTGAATTAGGCTTTTCA+AGG + chr2.4:54557401-54557420 None:intergenic 35.0%
! TTTGGGTTAATCAATTGGGT+GGG - chr2.4:54558057-54558076 MS.gene073378:CDS 35.0%
!! AAGTTGATGCCCTTAAGAAA+TGG - chr2.4:54557943-54557962 MS.gene073378:intron 35.0%
!! ATTCCAAAAGTATTCGTCCA+AGG + chr2.4:54557876-54557895 None:intergenic 35.0%
!! TAGGTTCTTTAAAACCGACA+AGG - chr2.4:54557650-54557669 MS.gene073378:CDS 35.0%
!!! GTTTGTTTTCAGCTTTAAGG+AGG - chr2.4:54558247-54558266 MS.gene073378:CDS 35.0%
!!! TTTTGGGTTAATCAATTGGG+TGG - chr2.4:54558056-54558075 MS.gene073378:CDS 35.0%
AGACCAACCCCATTTCTTAA+GGG + chr2.4:54557955-54557974 None:intergenic 40.0%
ATGAGGTATGATACAGCGAA+TGG + chr2.4:54557309-54557328 None:intergenic 40.0%
CAAAGCTTTCAACAACAAGC+AGG - chr2.4:54557362-54557381 MS.gene073378:CDS 40.0%
CAAGTTACACATTCGGTAGA+TGG + chr2.4:54558350-54558369 None:intergenic 40.0%
CTCACCTTCTTAGAAAACCA+TGG - chr2.4:54557420-54557439 MS.gene073378:CDS 40.0%
GCAAACAATGGTATCCTTGT+CGG + chr2.4:54557667-54557686 None:intergenic 40.0%
GGTTGTGATGAAAGTAACCA+AGG + chr2.4:54557486-54557505 None:intergenic 40.0%
GTTGATGCCCTTAAGAAATG+GGG - chr2.4:54557945-54557964 MS.gene073378:intron 40.0%
TAGACCAACCCCATTTCTTA+AGG + chr2.4:54557956-54557975 None:intergenic 40.0%
TGAGGTATGATACAGCGAAT+GGG + chr2.4:54557308-54557327 None:intergenic 40.0%
TGTTGTCGTGTGAAAAACCA+TGG + chr2.4:54557440-54557459 None:intergenic 40.0%
TTTCATCACAACCCCACAAA+AGG - chr2.4:54557493-54557512 MS.gene073378:CDS 40.0%
! AACAATTGTTCCAAGGGCAT+TGG - chr2.4:54558133-54558152 MS.gene073378:CDS 40.0%
! AGAGTTTAGGGTTTGATCCT+TGG - chr2.4:54557856-54557875 MS.gene073378:CDS 40.0%
! ATTCCTTGGCACTTGCTAAA+AGG - chr2.4:54558081-54558100 MS.gene073378:CDS 40.0%
! GATCCTTGGACGAATACTTT+TGG - chr2.4:54557870-54557889 MS.gene073378:intron 40.0%
! GCCATCTACATTTGGTTCAA+AGG - chr2.4:54557806-54557825 MS.gene073378:CDS 40.0%
! TCCGCCACAAATGTAGTTTT+AGG - chr2.4:54557187-54557206 MS.gene073378:CDS 40.0%
!! AAAGCTTTGAGAGCAGATTG+AGG + chr2.4:54557351-54557370 None:intergenic 40.0%
ACACATTCGGTAGATGGCAT+TGG + chr2.4:54558344-54558363 None:intergenic 45.0%
ATGCCCTTAAGAAATGGGGT+TGG - chr2.4:54557949-54557968 MS.gene073378:intron 45.0%
CAGTCAAGGCCATCTACATT+TGG - chr2.4:54557798-54557817 MS.gene073378:CDS 45.0%
TATTGCAGAACCAATGCCCT+TGG + chr2.4:54558146-54558165 None:intergenic 45.0%
TCAATTGGGTGGGAATTCCT+TGG - chr2.4:54558067-54558086 MS.gene073378:CDS 45.0%
! ATCGGGAACAACAAGTGTTG+AGG + chr2.4:54557228-54557247 None:intergenic 45.0%
! CAAGCATTTAGGATGCATCC+TGG - chr2.4:54557990-54558009 MS.gene073378:intron 45.0%
!! ATCAGAGGAAGAAGCACCAT+TGG + chr2.4:54557547-54557566 None:intergenic 45.0%
!! TCGGGAACAACAAGTGTTGA+GGG + chr2.4:54557227-54557246 None:intergenic 45.0%
TTGCTAGCTCGCTTCAGTCA+AGG - chr2.4:54557784-54557803 MS.gene073378:CDS 50.0%
! TGGCCTTTTAGCAAGTGCCA+AGG + chr2.4:54558087-54558106 None:intergenic 50.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 54557168 54558373 54557168 ID=MS.gene073378
chr2.4 mRNA 54557168 54558373 54557168 ID=MS.gene073378.t1;Parent=MS.gene073378
chr2.4 exon 54558027 54558373 54558027 ID=MS.gene073378.t1.exon1;Parent=MS.gene073378.t1
chr2.4 CDS 54558027 54558373 54558027 ID=cds.MS.gene073378.t1;Parent=MS.gene073378.t1
chr2.4 exon 54557168 54557888 54557168 ID=MS.gene073378.t1.exon2;Parent=MS.gene073378.t1
chr2.4 CDS 54557168 54557888 54557168 ID=cds.MS.gene073378.t1;Parent=MS.gene073378.t1
Gene Sequence

>MS.gene073378

ATGTTGAAGAAATTGTTTCTCCGCCACAAATGTAGTTTTAGGTCTCATCACAACAACCCTCAACACTTGTTGTTCCCGATTTCACTCATCAGATACTACAACACTACAATAACAACAACATCTGAATCAAACACACACCCATTCGCTGTATCATACCTCATCAACAATTTTGGTTTCTCACCTCAATCTGCTCTCAAAGCTTTCAACAACAAGCAGGTTCGTTTCAATACCCTTGAAAAGCCTAATTCAGTTCTCACCTTCTTAGAAAACCATGGTTTTTCACACGACAACATACGCGTCATCATCAAAAAAGAACCTTGGTTACTTTCATCACAACCCCACAAAAGGTTATTGCTAAAGTTTCAATTTTTTCTATCCAATGGTGCTTCTTCCTCTGATATTGTTTCATCGTTAACTTCAAACCCTAGAATTTTACGAAGTAGCTTGGAGAAACAAATAATCCCTCTTTTTCAATTGTTAAATAGGTTCTTTAAAACCGACAAGGATACCATTGTTTGCTTAATTCGATGTTGGACTGCACTTGCTATTAATCCCTATCACCTTATTGTGTCTAATATCAATTTAATGTCTGATTTTGGAGTTTCTGATTCTGTCATTGCTAGCTCGCTTCAGTCAAGGCCATCTACATTTGGTTCAAAGGATTTGATTAAGTCATTGGAGGAAGTTAAGAGTTTAGGGTTTGATCCTTGGACGAATACTTTTGGAATTGCTTTGGCAGCTAAGAAAAGTTTGAGTAAAAAACTTTGGGATGAGAAAGTTGATGCCCTTAAGAAATGGGGTTGGTCTAATGAAGCTGTTTTTCAAGCATTTAGGATGCATCCTGGTTTCATGTTGACTTCAATTGATAAGATTAATTTGGTGATGAGTTTTTGGGTTAATCAATTGGGTGGGAATTCCTTGGCACTTGCTAAAAGGCCACATATTTTTGATTCAAGTTTGCAGAAAACAATTGTTCCAAGGGCATTGGTTCTGCAATATCTTGTGATGAAAGGTTTGAGGAAAAAGAATGCAAGCTTAGTTGAACCATTTCGTTATTCTGGGAAAATGTTCTTGAGCAAGTTTGTTTTCAGCTTTAAGGAGGAGTCTGATTATCTATTAAAGTTATATGACGAAAAAATGAAACTTGCATACACAAAAGAGAACAATGGCATGCCAATGCCATCTACCGAATGTGTAACTTGTTAA
Protein sequence

>MS.gene073378.t1

MLKKLFLRHKCSFRSHHNNPQHLLFPISLIRYYNTTITTTSESNTHPFAVSYLINNFGFSPQSALKAFNNKQVRFNTLEKPNSVLTFLENHGFSHDNIRVIIKKEPWLLSSQPHKRFFKTDKDTIVCLIRCWTALAINPYHLIVSNINLMSDFGVSDSVIASSLQSRPSTFGSKDLIKSLEEVKSLGFDPWTNTFGIALAAKKSLSKKLWDEKVDALKKWGWSNEAVFQAFRMHPGFMLTSIDKINLVMSFWVNQLGGNSLALAKRPHIFDSSLQKTIVPRALVLQYLVMKGLRKKNASLVEPFRYSGKMFLSKFVFSFKEESDYLLKLYDEKMKLAYTKENNGMPMPSTECVTC