AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene00385

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00385.t1 MTR_2g438010 86.849 403 52 1 1 402 21 423 0.0 706
MS.gene00385.t1 MTR_2g076320 84.119 403 63 1 1 402 1 403 0.0 663
MS.gene00385.t1 MTR_2g437990 82.630 403 68 2 1 402 1 402 0.0 659
MS.gene00385.t1 MTR_2g437170 73.171 410 100 4 1 400 1 410 0.0 588
MS.gene00385.t1 MTR_2g437150 73.086 405 101 3 1 397 1 405 0.0 585
MS.gene00385.t1 MTR_2g437120 71.930 399 103 3 1 394 1 395 0.0 550
MS.gene00385.t1 MTR_2g437960 67.901 405 126 2 1 401 1 405 0.0 544
MS.gene00385.t1 MTR_2g437960 67.990 403 125 2 1 399 1 403 0.0 541
MS.gene00385.t1 MTR_2g437940 70.270 407 83 4 1 402 1 374 0.0 535
MS.gene00385.t1 MTR_2g437100 71.503 386 103 3 4 382 10 395 0.0 531
MS.gene00385.t1 MTR_2g437160 68.672 399 119 3 1 395 12 408 0.0 531
MS.gene00385.t1 MTR_2g437180 66.418 402 123 3 1 397 1 395 0.0 509
MS.gene00385.t1 MTR_2g437240 62.468 389 109 2 48 401 31 417 3.61e-160 457
MS.gene00385.t1 MTR_2g437200 62.334 377 105 2 41 382 24 398 9.65e-156 445
MS.gene00385.t1 MTR_2g438020 59.948 387 117 3 48 399 70 453 5.66e-154 444
MS.gene00385.t1 MTR_2g437130 61.685 368 132 3 31 398 29 387 5.62e-152 435
MS.gene00385.t1 MTR_2g437080 51.240 363 170 2 32 394 27 382 3.78e-125 367
MS.gene00385.t1 MTR_2g437020 51.913 366 166 4 27 390 21 378 6.46e-122 358
MS.gene00385.t1 MTR_2g436440 49.604 379 184 2 12 390 13 384 7.48e-121 356
MS.gene00385.t1 MTR_2g437060 50.138 363 174 3 28 390 38 393 1.03e-120 356
MS.gene00385.t1 MTR_2g437030 49.454 366 174 2 29 394 114 468 2.31e-115 345
MS.gene00385.t1 MTR_2g436400 49.300 357 170 3 32 386 34 381 5.72e-114 338
MS.gene00385.t1 MTR_2g437040 50.000 344 169 1 51 394 42 382 1.49e-112 335
MS.gene00385.t1 MTR_2g437260 45.596 386 191 7 4 387 3 371 4.72e-108 323
MS.gene00385.t1 MTR_4g119550 45.977 348 182 3 44 390 46 388 1.24e-106 320
MS.gene00385.t1 MTR_2g436460 49.280 347 166 6 38 383 40 377 6.73e-99 300
MS.gene00385.t1 MTR_4g120380 46.176 340 176 3 40 379 37 369 6.24e-95 289
MS.gene00385.t1 MTR_4g119580 45.000 340 182 2 40 379 35 369 2.63e-90 277
MS.gene00385.t1 MTR_4g120380 46.417 321 165 3 40 360 37 350 1.11e-89 277
MS.gene00385.t1 MTR_2g437160 62.927 205 73 1 194 395 113 317 1.24e-83 258
MS.gene00385.t1 MTR_2g019840 41.361 382 189 9 25 387 11 376 1.05e-81 256
MS.gene00385.t1 MTR_2g019810 43.695 341 169 8 51 382 33 359 4.73e-77 243
MS.gene00385.t1 MTR_2g437090 49.708 171 86 0 225 395 1 171 7.25e-55 179
MS.gene00385.t1 MTR_3g450500 32.530 332 219 3 51 379 40 369 2.16e-50 174
MS.gene00385.t1 MTR_4g119570 38.462 247 116 3 132 378 17 227 4.12e-46 158
MS.gene00385.t1 MTR_4g049400 53.333 150 69 1 1 149 1 150 1.91e-43 151
MS.gene00385.t1 MTR_4g007490 29.769 346 235 6 38 379 26 367 1.25e-42 153
MS.gene00385.t1 MTR_8g081000 29.231 325 223 4 82 402 87 408 1.06e-35 135
MS.gene00385.t1 MTR_2g436370 43.709 151 82 2 51 201 48 195 1.43e-35 130
MS.gene00385.t1 MTR_8g081000 29.667 300 207 2 82 379 87 384 2.27e-35 134
MS.gene00385.t1 MTR_8g081000 29.667 300 207 2 82 379 87 384 2.74e-35 134
MS.gene00385.t1 MTR_8g080990 29.630 297 205 2 82 376 74 368 4.06e-33 128
MS.gene00385.t1 MTR_3g085240 53.333 90 25 1 284 373 176 248 2.01e-20 90.5
MS.gene00385.t1 MTR_3g085240 40.113 177 83 5 48 221 56 212 2.91e-20 89.7
MS.gene00385.t1 MTR_2g436380 37.168 113 47 4 225 331 1 95 7.89e-16 77.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00385.t1 AT5G07900 33.434 332 216 4 51 379 70 399 1.92e-56 191
MS.gene00385.t1 AT1G21150 32.000 350 227 4 37 377 37 384 2.36e-54 185
MS.gene00385.t1 AT1G21150 32.000 350 227 4 37 377 101 448 1.17e-53 184
MS.gene00385.t1 AT1G21150 32.317 328 217 3 53 377 23 348 5.36e-52 177
MS.gene00385.t1 AT1G61980 29.379 354 204 7 51 365 53 399 6.90e-37 139
MS.gene00385.t1 AT1G61980 29.379 354 204 7 51 365 53 399 6.90e-37 139
MS.gene00385.t1 AT1G61980 29.379 354 204 7 51 365 53 399 6.90e-37 139
MS.gene00385.t1 AT5G64950 29.706 340 219 7 46 372 35 367 6.99e-37 138
MS.gene00385.t1 AT1G61990 29.268 369 208 8 51 379 53 408 2.56e-34 132
MS.gene00385.t1 AT1G61990 29.268 369 208 8 51 379 53 408 2.56e-34 132
MS.gene00385.t1 AT1G61970 27.887 355 208 9 51 365 53 399 2.98e-34 132
MS.gene00385.t1 AT1G61970 27.887 355 208 9 51 365 53 399 2.98e-34 132
MS.gene00385.t1 AT1G61970 27.887 355 208 9 51 365 53 399 2.98e-34 132
MS.gene00385.t1 AT1G61970 27.887 355 208 9 51 365 53 399 2.98e-34 132
MS.gene00385.t1 AT1G61970 27.887 355 208 9 51 365 53 399 2.98e-34 132
MS.gene00385.t1 AT1G61970 27.887 355 208 9 51 365 53 399 2.98e-34 132
MS.gene00385.t1 AT1G61970 27.887 355 208 9 51 365 53 399 2.98e-34 132
MS.gene00385.t1 AT1G62120 27.134 328 200 6 51 342 57 381 5.56e-27 112
MS.gene00385.t1 AT3G46950 29.151 271 180 4 30 297 30 291 7.77e-26 108
MS.gene00385.t1 AT1G61960 30.204 245 166 3 51 294 53 293 1.59e-23 102
MS.gene00385.t1 AT1G62150 27.347 245 174 4 51 294 59 300 2.94e-21 95.9
MS.gene00385.t1 AT1G62085 28.980 245 170 3 51 294 56 297 3.60e-21 95.5
MS.gene00385.t1 AT1G62085 28.980 245 170 3 51 294 56 297 3.60e-21 95.5
MS.gene00385.t1 AT1G62110 28.000 250 168 4 51 295 53 295 1.74e-20 93.6
MS.gene00385.t1 AT1G62010 25.763 295 176 5 85 342 71 359 6.09e-20 91.3
MS.gene00385.t1 AT5G23930 27.869 244 163 5 43 284 48 280 6.60e-20 91.7
MS.gene00385.t1 AT1G56380 25.203 369 205 15 51 365 28 379 1.22e-14 75.5
MS.gene00385.t1 AT1G56380 25.203 369 205 15 51 365 17 368 1.47e-14 75.1
MS.gene00385.t1 AT2G44020 22.180 266 191 5 87 343 183 441 3.61e-11 65.1

Find 67 sgRNAs with CRISPR-Local

Find 93 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAATTTGATGGTTGATTT+TGG 0.116384 2.2:-51175851 MS.gene00385:CDS
TCCTACCTTATCAACAATTT+TGG 0.146770 2.2:-51176277 MS.gene00385:CDS
CGAACAAGGCCATCTATATT+TGG 0.170334 2.2:-51175797 MS.gene00385:CDS
AAGCTACTTTGTAAAATTCT+AGG 0.214273 2.2:+51176004 None:intergenic
GACCCTTCAACGACCGCTTT+TGG 0.242026 2.2:-51175725 MS.gene00385:CDS
TTGTTTGCTTAATTCGATAT+TGG 0.297090 2.2:-51175916 MS.gene00385:CDS
AAGATGTTATTCGAGTATTT+AGG 0.310453 2.2:-51175616 MS.gene00385:CDS
TGACACCTAAAACAAGATTC+TGG 0.328780 2.2:+51176413 None:intergenic
AACTGATTTGATTAAGTCAT+TGG 0.334181 2.2:-51175771 MS.gene00385:CDS
GCAAACAATGATATCCTTGT+TGG 0.346453 2.2:+51175931 None:intergenic
TTGGAGGAAGTTAAGGGCTT+AGG 0.351722 2.2:-51175752 MS.gene00385:CDS
ATTAGACACAATAAGGTGAT+AGG 0.358420 2.2:+51175874 None:intergenic
AATTGATATTAGACACAATA+AGG 0.377379 2.2:+51175867 None:intergenic
TGTGTCTAATATCAATTTGA+TGG 0.381516 2.2:-51175861 MS.gene00385:CDS
AGAAACCAAAATTGTTGATA+AGG 0.390251 2.2:+51176272 None:intergenic
TAAGTCATTGGAGGAAGTTA+AGG 0.400812 2.2:-51175759 MS.gene00385:CDS
AAGTTGACGTCTTTATCAAA+TGG 0.402844 2.2:-51175652 MS.gene00385:CDS
CTGAGGATATGTTCTTGAAC+AGG 0.405579 2.2:-51175370 MS.gene00385:CDS
AATGGATGAGTAACATACTT+TGG 0.408464 2.2:-51175682 MS.gene00385:CDS
TTGGGTTAATCAAATGGGTT+GGG 0.412996 2.2:-51175537 MS.gene00385:CDS
TGGAGGAAGTTAAGGGCTTA+GGG 0.415402 2.2:-51175751 MS.gene00385:CDS
AAGAAGTTGATGACTGAGTC+AGG 0.419249 2.2:+51176187 None:intergenic
AGTTGACGTCTTTATCAAAT+GGG 0.424416 2.2:-51175651 MS.gene00385:CDS
AATTGCAAAACTGAGGCTCT+TGG 0.425012 2.2:+51175452 None:intergenic
CTGGGAGAGAAACGATTTGT+TGG 0.426755 2.2:+51176432 None:intergenic
GTCCCAAAAGCGGTCGTTGA+AGG 0.427635 2.2:+51175722 None:intergenic
AGATCAATACATTACACATT+TGG 0.428401 2.2:+51175247 None:intergenic
TCAGTTGAACCAAATATAGA+TGG 0.441181 2.2:+51175788 None:intergenic
AAGTCATTGGAGGAAGTTAA+GGG 0.446904 2.2:-51175758 MS.gene00385:CDS
ATGGATGAGTAACATACTTT+GGG 0.450437 2.2:-51175681 MS.gene00385:CDS
TTTGGGTTAATCAAATGGGT+TGG 0.473047 2.2:-51175538 MS.gene00385:CDS
TCAAATGGGTTGGGATCCCT+TGG 0.473886 2.2:-51175528 MS.gene00385:CDS
TTTCAGCTTTAAGGAGGAGT+TGG 0.474645 2.2:-51175342 MS.gene00385:CDS
TATGTTACTCATCCATTGCT+TGG 0.480966 2.2:+51175688 None:intergenic
AGCTACTTTGTAAAATTCTA+GGG 0.484426 2.2:+51176005 None:intergenic
GACACCTAAAACAAGATTCT+GGG 0.487353 2.2:+51176414 None:intergenic
TCAATACATTACACATTTGG+TGG 0.494508 2.2:+51175250 None:intergenic
GAAAGGTTTGCGAAAGAAGA+AGG 0.527252 2.2:-51175420 MS.gene00385:CDS
AAACTAAAAGAAAACATAAG+TGG 0.529985 2.2:+51175491 None:intergenic
ATATCCTCAGAATAAGCAAA+TGG 0.530372 2.2:+51175383 None:intergenic
TACATTACACATTTGGTGGA+TGG 0.530490 2.2:+51175254 None:intergenic
CAAAGCTTTCAACCTCAAGC+AGG 0.538715 2.2:-51176233 MS.gene00385:CDS
TTTGATGATGATGCGTATGT+TGG 0.549716 2.2:+51176141 None:intergenic
TGTTGGAGTTTGAAAAGCCA+TGG 0.550191 2.2:+51176158 None:intergenic
ATAAGGTAGGATACAGCAAA+TGG 0.555873 2.2:+51176289 None:intergenic
ACCAAAATTGTTGATAAGGT+AGG 0.556095 2.2:+51176276 None:intergenic
TGATTTGATTAAGTCATTGG+AGG 0.558497 2.2:-51175768 MS.gene00385:CDS
TTGCTAGATTGCTTCGAACA+AGG 0.560619 2.2:-51175811 MS.gene00385:CDS
TGGAGAATTAATAAGTGCCA+AGG 0.561400 2.2:+51175511 None:intergenic
ACGTCTTTATCAAATGGGGT+TGG 0.563703 2.2:-51175646 MS.gene00385:CDS
TCCCAAAAGCGGTCGTTGAA+GGG 0.570224 2.2:+51175723 None:intergenic
TTAGACACAATAAGGTGATA+GGG 0.570881 2.2:+51175875 None:intergenic
TAGACCATTTGCTTATTCTG+AGG 0.571730 2.2:-51175387 MS.gene00385:CDS
ATTGACGTCAACATCAAACT+AGG 0.584788 2.2:+51175587 None:intergenic
CTGCTTTGGTGACCAAGCAA+TGG 0.599773 2.2:-51175700 MS.gene00385:CDS
TATTGAAACGAACCTGCTTG+AGG 0.613403 2.2:+51176221 None:intergenic
GTTGACGTCTTTATCAAATG+GGG 0.617322 2.2:-51175650 MS.gene00385:CDS
CTAGGGTGTGCAGTTAACAA+TGG 0.619109 2.2:+51176022 None:intergenic
TAACAATGGAATAATATCAG+AGG 0.624344 2.2:+51176036 None:intergenic
CAAAAGAAATTGCAAAACTG+AGG 0.625549 2.2:+51175445 None:intergenic
GGAGAATTAATAAGTGCCAA+GGG 0.628472 2.2:+51175512 None:intergenic
TGTTCGAAGCAATCTAGCAA+TGG 0.646698 2.2:+51175814 None:intergenic
GACTGAGTCAGGCTTATCTG+AGG 0.649295 2.2:+51176198 None:intergenic
AATGAAACTTGCAAATACAA+CGG 0.655557 2.2:-51175291 MS.gene00385:CDS
CACCAAAGCAGTCCCAAAAG+CGG 0.659565 2.2:+51175712 None:intergenic
TAGGTTCTTGATAACCAACA+AGG 0.696135 2.2:-51175945 MS.gene00385:CDS
GGTTGTGATGAAAGTAACCA+AGG 0.737190 2.2:+51176112 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACTTAATAATTCAAAAAGA+GGG + chr2.2:51175723-51175742 None:intergenic 15.0%
!! AAACTAAAAGAAAACATAAG+TGG + chr2.2:51176198-51176217 None:intergenic 20.0%
!! AATTGATATTAGACACAATA+AGG + chr2.2:51175822-51175841 None:intergenic 20.0%
!! CTACTTAATAATTCAAAAAG+AGG + chr2.2:51175724-51175743 None:intergenic 20.0%
!! GATAGAAAAAATTGAAACTT+TGG + chr2.2:51175616-51175635 None:intergenic 20.0%
!!! CTCTTTTTGAATTATTAAGT+AGG - chr2.2:51175722-51175741 MS.gene00385:CDS 20.0%
!!! TTTCAATTTTTTCTATCTGA+TGG - chr2.2:51175619-51175638 MS.gene00385:CDS 20.0%
!!! TTTCTTTTAGTTTACCTAAA+AGG - chr2.2:51176205-51176224 MS.gene00385:CDS 20.0%
! AAGATGTTATTCGAGTATTT+AGG - chr2.2:51176070-51176089 MS.gene00385:CDS 25.0%
! AATGAAACTTGCAAATACAA+CGG - chr2.2:51176395-51176414 MS.gene00385:CDS 25.0%
! AGAAACCAAAATTGTTGATA+AGG + chr2.2:51175417-51175436 None:intergenic 25.0%
! ATCAACTTCTTAAAAAACCA+TGG - chr2.2:51175511-51175530 MS.gene00385:CDS 25.0%
! TAACAATGGAATAATATCAG+AGG + chr2.2:51175653-51175672 None:intergenic 25.0%
! TGTGTCTAATATCAATTTGA+TGG - chr2.2:51175825-51175844 MS.gene00385:CDS 25.0%
! TTGTTTGCTTAATTCGATAT+TGG - chr2.2:51175770-51175789 MS.gene00385:CDS 25.0%
!! AAGCTACTTTGTAAAATTCT+AGG + chr2.2:51175685-51175704 None:intergenic 25.0%
!! AGCTACTTTGTAAAATTCTA+GGG + chr2.2:51175684-51175703 None:intergenic 25.0%
!! TAGAATTTTACAAAGTAGCT+TGG - chr2.2:51175684-51175703 MS.gene00385:CDS 25.0%
!! TTGCAATTTCTTTTGATGAA+AGG - chr2.2:51176249-51176268 MS.gene00385:CDS 25.0%
!!! AACTGATTTGATTAAGTCAT+TGG - chr2.2:51175915-51175934 MS.gene00385:CDS 25.0%
!!! AGTTTTTGGGTTAATCAAAT+GGG - chr2.2:51176144-51176163 MS.gene00385:CDS 25.0%
!!! ATCAATTTGATGGTTGATTT+TGG - chr2.2:51175835-51175854 MS.gene00385:CDS 25.0%
!!! TAATCTGTTGATGAGTTTTT+GGG - chr2.2:51176131-51176150 MS.gene00385:CDS 25.0%
!!! TTAATCTGTTGATGAGTTTT+TGG - chr2.2:51176130-51176149 MS.gene00385:CDS 25.0%
AAGTTGACGTCTTTATCAAA+TGG - chr2.2:51176034-51176053 MS.gene00385:CDS 30.0%
AATGGATGAGTAACATACTT+TGG - chr2.2:51176004-51176023 MS.gene00385:CDS 30.0%
AGTTGACGTCTTTATCAAAT+GGG - chr2.2:51176035-51176054 MS.gene00385:CDS 30.0%
ATATCCTCAGAATAAGCAAA+TGG + chr2.2:51176306-51176325 None:intergenic 30.0%
ATGCTGCATTTGAGTAAAAA+TGG + chr2.2:51175346-51175365 None:intergenic 30.0%
ATGGATGAGTAACATACTTT+GGG - chr2.2:51176005-51176024 MS.gene00385:CDS 30.0%
ATTAGACACAATAAGGTGAT+AGG + chr2.2:51175815-51175834 None:intergenic 30.0%
CAAAAGAAATTGCAAAACTG+AGG + chr2.2:51176244-51176263 None:intergenic 30.0%
TCAATACATTACACATTTGG+TGG + chr2.2:51176439-51176458 None:intergenic 30.0%
TCAGTTGAACCAAATATAGA+TGG + chr2.2:51175901-51175920 None:intergenic 30.0%
TGATTTGATTAAGTCATTGG+AGG - chr2.2:51175918-51175937 MS.gene00385:CDS 30.0%
TGCTGCATTTGAGTAAAAAT+GGG + chr2.2:51175345-51175364 None:intergenic 30.0%
TTAGACACAATAAGGTGATA+GGG + chr2.2:51175814-51175833 None:intergenic 30.0%
! ACCAAAATTGTTGATAAGGT+AGG + chr2.2:51175413-51175432 None:intergenic 30.0%
! TCCTACCTTATCAACAATTT+TGG - chr2.2:51175409-51175428 MS.gene00385:CDS 30.0%
!!! GAGTTTTTGGGTTAATCAAA+TGG - chr2.2:51176143-51176162 MS.gene00385:CDS 30.0%
AAGTCATTGGAGGAAGTTAA+GGG - chr2.2:51175928-51175947 MS.gene00385:CDS 35.0%
ATAAGGTAGGATACAGCAAA+TGG + chr2.2:51175400-51175419 None:intergenic 35.0%
ATTGACGTCAACATCAAACT+AGG + chr2.2:51176102-51176121 None:intergenic 35.0%
GACACCTAAAACAAGATTCT+GGG + chr2.2:51175275-51175294 None:intergenic 35.0%
GCAAACAATGATATCCTTGT+TGG + chr2.2:51175758-51175777 None:intergenic 35.0%
GGAGAATTAATAAGTGCCAA+GGG + chr2.2:51176177-51176196 None:intergenic 35.0%
GTAAAAATGGGAATGACAAG+TGG + chr2.2:51175333-51175352 None:intergenic 35.0%
GTTGACGTCTTTATCAAATG+GGG - chr2.2:51176036-51176055 MS.gene00385:CDS 35.0%
TAAGTCATTGGAGGAAGTTA+AGG - chr2.2:51175927-51175946 MS.gene00385:CDS 35.0%
TAGACCATTTGCTTATTCTG+AGG - chr2.2:51176299-51176318 MS.gene00385:CDS 35.0%
TATGTTACTCATCCATTGCT+TGG + chr2.2:51176001-51176020 None:intergenic 35.0%
TGACACCTAAAACAAGATTC+TGG + chr2.2:51175276-51175295 None:intergenic 35.0%
TGGAGAATTAATAAGTGCCA+AGG + chr2.2:51176178-51176197 None:intergenic 35.0%
! ACTTTGGCGATAACATTTTG+TGG + chr2.2:51175600-51175619 None:intergenic 35.0%
! CAAGTGGTTGTTGAATTTTG+AGG + chr2.2:51175317-51175336 None:intergenic 35.0%
! CTTTGGCGATAACATTTTGT+GGG + chr2.2:51175599-51175618 None:intergenic 35.0%
! TACATTACACATTTGGTGGA+TGG + chr2.2:51176435-51176454 None:intergenic 35.0%
! TAGGTTCTTGATAACCAACA+AGG - chr2.2:51175741-51175760 MS.gene00385:CDS 35.0%
! TTGGGTTAATCAAATGGGTT+GGG - chr2.2:51176149-51176168 MS.gene00385:CDS 35.0%
! TTTGGCGATAACATTTTGTG+GGG + chr2.2:51175598-51175617 None:intergenic 35.0%
! TTTGGGTTAATCAAATGGGT+TGG - chr2.2:51176148-51176167 MS.gene00385:CDS 35.0%
!! TCATCATCAAAAAAGCACCT+TGG - chr2.2:51175557-51175576 MS.gene00385:CDS 35.0%
!! TTTGATGATGATGCGTATGT+TGG + chr2.2:51175548-51175567 None:intergenic 35.0%
AATTGCAAAACTGAGGCTCT+TGG + chr2.2:51176237-51176256 None:intergenic 40.0%
ACGTCTTTATCAAATGGGGT+TGG - chr2.2:51176040-51176059 MS.gene00385:CDS 40.0%
CGAACAAGGCCATCTATATT+TGG - chr2.2:51175889-51175908 MS.gene00385:CDS 40.0%
CTGAGGATATGTTCTTGAAC+AGG - chr2.2:51176316-51176335 MS.gene00385:CDS 40.0%
GAAAGGTTTGCGAAAGAAGA+AGG - chr2.2:51176266-51176285 MS.gene00385:CDS 40.0%
GGTTGTGATGAAAGTAACCA+AGG + chr2.2:51175577-51175596 None:intergenic 40.0%
TATTGAAACGAACCTGCTTG+AGG + chr2.2:51175468-51175487 None:intergenic 40.0%
TGTTCGAAGCAATCTAGCAA+TGG + chr2.2:51175875-51175894 None:intergenic 40.0%
TGTTGGAGTTTGAAAAGCCA+TGG + chr2.2:51175531-51175550 None:intergenic 40.0%
TTGCTAGATTGCTTCGAACA+AGG - chr2.2:51175875-51175894 MS.gene00385:CDS 40.0%
! CAGGTGTGTTTTCAGCTTTA+AGG - chr2.2:51176335-51176354 MS.gene00385:CDS 40.0%
! GCTCTTGGAATGATCCTTTT+AGG + chr2.2:51176222-51176241 None:intergenic 40.0%
!! AAGAAGTTGATGACTGAGTC+AGG + chr2.2:51175502-51175521 None:intergenic 40.0%
!! TTTCAGCTTTAAGGAGGAGT+TGG - chr2.2:51176344-51176363 MS.gene00385:CDS 40.0%
!!! CTCTCCCAGAATCTTGTTTT+AGG - chr2.2:51175268-51175287 MS.gene00385:CDS 40.0%
!!! GTGTGTTTTCAGCTTTAAGG+AGG - chr2.2:51176338-51176357 MS.gene00385:CDS 40.0%
CAAAGCTTTCAACCTCAAGC+AGG - chr2.2:51175453-51175472 MS.gene00385:CDS 45.0%
CTAGGGTGTGCAGTTAACAA+TGG + chr2.2:51175667-51175686 None:intergenic 45.0%
CTGGGAGAGAAACGATTTGT+TGG + chr2.2:51175257-51175276 None:intergenic 45.0%
TGGAGGAAGTTAAGGGCTTA+GGG - chr2.2:51175935-51175954 MS.gene00385:CDS 45.0%
TTGGAGGAAGTTAAGGGCTT+AGG - chr2.2:51175934-51175953 MS.gene00385:CDS 45.0%
CACCAAAGCAGTCCCAAAAG+CGG + chr2.2:51175977-51175996 None:intergenic 50.0%
GACTGAGTCAGGCTTATCTG+AGG + chr2.2:51175491-51175510 None:intergenic 50.0%
TCCCAAAAGCGGTCGTTGAA+GGG + chr2.2:51175966-51175985 None:intergenic 50.0%
! CTGCTTTGGTGACCAAGCAA+TGG - chr2.2:51175986-51176005 MS.gene00385:CDS 50.0%
!! ACCCTTCAACGACCGCTTTT+GGG - chr2.2:51175962-51175981 MS.gene00385:CDS 50.0%
!! TCAAATGGGTTGGGATCCCT+TGG - chr2.2:51176158-51176177 MS.gene00385:CDS 50.0%
GTCCCAAAAGCGGTCGTTGA+AGG + chr2.2:51175967-51175986 None:intergenic 55.0%
! GACCCTTCAACGACCGCTTT+TGG - chr2.2:51175961-51175980 MS.gene00385:CDS 55.0%
!!! GACCGCTTTTGGGACTGCTT+TGG - chr2.2:51175972-51175991 MS.gene00385:CDS 55.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 51175250 51176458 51175250 ID=MS.gene00385
chr2.2 mRNA 51175250 51176458 51175250 ID=MS.gene00385.t1;Parent=MS.gene00385
chr2.2 exon 51175250 51176458 51175250 ID=MS.gene00385.t1.exon1;Parent=MS.gene00385.t1
chr2.2 CDS 51175250 51176458 51175250 ID=cds.MS.gene00385.t1;Parent=MS.gene00385.t1
Gene Sequence

>MS.gene00385

ATGTCCAACAAATCGTTTCTCTCCCAGAATCTTGTTTTAGGTGTCATCACAACAAAATCAACAACCTCAAAATTCAACAACCACTTGTCATTCCCATTTTTACTCAAATGCAGCATCACAACATCTCAATCAGAATCATTGACACAACCATTTGCTGTATCCTACCTTATCAACAATTTTGGTTTCTCAACTGAATCAGCTCTCAAAGCTTTCAACCTCAAGCAGGTTCGTTTCAATACCTCAGATAAGCCTGACTCAGTCATCAACTTCTTAAAAAACCATGGCTTTTCAAACTCCAACATACGCATCATCATCAAAAAAGCACCTTGGTTACTTTCATCACAACCCCACAAAATGTTATCGCCAAAGTTTCAATTTTTTCTATCTGATGGCGCTTATTCCTCTGATATTATTCCATTGTTAACTGCACACCCTAGAATTTTACAAAGTAGCTTGGAGAAACGAATAATCCCTCTTTTTGAATTATTAAGTAGGTTCTTGATAACCAACAAGGATATCATTGTTTGCTTAATTCGATATTGGACTGCATTTTCTACTAATCCCTATCACCTTATTGTGTCTAATATCAATTTGATGGTTGATTTTGGAGTTTCTGATTCTACCATTGCTAGATTGCTTCGAACAAGGCCATCTATATTTGGTTCAACTGATTTGATTAAGTCATTGGAGGAAGTTAAGGGCTTAGGGTTTGACCCTTCAACGACCGCTTTTGGGACTGCTTTGGTGACCAAGCAATGGATGAGTAACATACTTTGGGATAAGAAAGTTGACGTCTTTATCAAATGGGGTTGGTCTGATGAAGATGTTATTCGAGTATTTAGGAGTCAGCCTAGTTTGATGTTGACGTCAATTGATAAAATTAATCTGTTGATGAGTTTTTGGGTTAATCAAATGGGTTGGGATCCCTTGGCACTTATTAATTCTCCACTTATGTTTTCTTTTAGTTTACCTAAAAGGATCATTCCAAGAGCCTCAGTTTTGCAATTTCTTTTGATGAAAGGTTTGCGAAAGAAGAAGGCGAGCTTAGTTAGACCATTTGCTTATTCTGAGGATATGTTCTTGAACAGGTGTGTTTTCAGCTTTAAGGAGGAGTTGGATTATCTGTTGAAGTTATATGACGAAAAAATGAAACTTGCAAATACAACGGAGAACAATGTGATGCCATCCACCAAATGTGTAATGTATTGA
Protein sequence

>MS.gene00385.t1

MSNKSFLSQNLVLGVITTKSTTSKFNNHLSFPFLLKCSITTSQSESLTQPFAVSYLINNFGFSTESALKAFNLKQVRFNTSDKPDSVINFLKNHGFSNSNIRIIIKKAPWLLSSQPHKMLSPKFQFFLSDGAYSSDIIPLLTAHPRILQSSLEKRIIPLFELLSRFLITNKDIIVCLIRYWTAFSTNPYHLIVSNINLMVDFGVSDSTIARLLRTRPSIFGSTDLIKSLEEVKGLGFDPSTTAFGTALVTKQWMSNILWDKKVDVFIKWGWSDEDVIRVFRSQPSLMLTSIDKINLLMSFWVNQMGWDPLALINSPLMFSFSLPKRIIPRASVLQFLLMKGLRKKKASLVRPFAYSEDMFLNRCVFSFKEELDYLLKLYDEKMKLANTTENNVMPSTKCVMY