AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene00284

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00284.t1 MTR_2g437020 89.636 357 35 1 18 372 27 383 0.0 643
MS.gene00284.t1 MTR_2g437060 68.871 363 106 3 12 369 35 395 3.19e-175 493
MS.gene00284.t1 MTR_2g437080 67.139 353 113 2 20 371 32 382 6.47e-171 481
MS.gene00284.t1 MTR_2g437030 65.135 370 124 3 6 372 102 469 8.68e-167 474
MS.gene00284.t1 MTR_2g436400 66.667 345 112 2 20 363 39 381 1.40e-163 463
MS.gene00284.t1 MTR_2g436440 64.110 365 124 3 13 372 27 389 1.14e-160 456
MS.gene00284.t1 MTR_2g437040 62.466 365 127 3 6 369 25 380 4.41e-158 449
MS.gene00284.t1 MTR_2g437120 55.278 360 154 5 12 367 35 391 1.89e-127 372
MS.gene00284.t1 MTR_4g119550 54.624 346 151 4 25 368 48 389 2.07e-125 366
MS.gene00284.t1 MTR_2g437960 50.394 381 174 4 2 369 18 396 1.27e-124 365
MS.gene00284.t1 MTR_2g437960 50.394 381 174 4 2 369 18 396 3.41e-124 365
MS.gene00284.t1 MTR_2g438010 54.734 338 147 3 30 363 72 407 1.52e-122 360
MS.gene00284.t1 MTR_2g437170 54.651 344 148 4 30 367 57 398 2.44e-121 357
MS.gene00284.t1 MTR_2g437150 54.070 344 150 4 30 367 57 398 7.92e-121 355
MS.gene00284.t1 MTR_2g437160 53.179 346 157 3 25 367 60 403 1.06e-120 355
MS.gene00284.t1 MTR_2g437200 50.802 374 141 5 25 359 29 398 1.73e-120 354
MS.gene00284.t1 MTR_2g437990 54.252 341 151 4 30 367 52 390 2.09e-120 355
MS.gene00284.t1 MTR_2g076320 53.216 342 154 3 30 367 52 391 1.57e-118 349
MS.gene00284.t1 MTR_2g437260 50.588 340 165 2 25 363 33 370 7.85e-118 347
MS.gene00284.t1 MTR_2g437180 50.136 367 167 5 4 367 35 388 5.87e-117 345
MS.gene00284.t1 MTR_2g437130 51.811 359 164 4 14 367 25 379 4.95e-116 342
MS.gene00284.t1 MTR_2g437240 48.750 400 160 6 7 367 13 406 6.79e-116 343
MS.gene00284.t1 MTR_2g437100 52.486 362 164 4 4 359 36 395 1.74e-115 342
MS.gene00284.t1 MTR_2g438020 48.413 378 152 5 27 365 70 443 4.29e-109 328
MS.gene00284.t1 MTR_2g437940 48.370 368 146 5 4 367 35 362 4.85e-107 319
MS.gene00284.t1 MTR_2g436460 48.529 340 169 4 25 362 44 379 3.90e-105 314
MS.gene00284.t1 MTR_4g119580 45.808 334 176 3 25 357 41 370 2.80e-93 284
MS.gene00284.t1 MTR_2g019840 47.230 343 172 6 29 368 44 380 6.52e-91 278
MS.gene00284.t1 MTR_4g120380 46.407 334 174 3 25 357 41 370 6.62e-90 275
MS.gene00284.t1 MTR_4g120380 47.452 314 161 2 25 338 41 350 6.94e-87 269
MS.gene00284.t1 MTR_2g437090 72.941 170 45 1 203 371 1 170 1.20e-85 257
MS.gene00284.t1 MTR_2g019810 44.290 359 182 8 12 359 8 359 6.19e-85 262
MS.gene00284.t1 MTR_2g437160 55.941 202 83 3 170 367 113 312 1.16e-67 216
MS.gene00284.t1 MTR_2g437160 42.553 94 50 1 25 118 60 149 3.66e-17 81.6
MS.gene00284.t1 MTR_2g436370 61.184 152 59 0 25 176 43 194 2.37e-57 186
MS.gene00284.t1 MTR_3g450500 32.628 331 213 3 29 353 39 365 5.02e-53 180
MS.gene00284.t1 MTR_4g119570 37.450 251 121 3 108 357 14 229 3.54e-43 150
MS.gene00284.t1 MTR_4g007490 31.348 319 212 4 29 343 38 353 1.57e-42 152
MS.gene00284.t1 MTR_8g080990 29.394 330 225 3 25 350 39 364 1.03e-33 129
MS.gene00284.t1 MTR_8g081000 26.686 341 241 3 25 364 52 384 1.69e-32 125
MS.gene00284.t1 MTR_8g081000 26.765 340 240 3 26 364 53 384 2.29e-32 125
MS.gene00284.t1 MTR_8g081000 26.686 341 241 3 25 364 52 384 2.43e-32 125
MS.gene00284.t1 MTR_4g049400 49.495 99 50 0 30 128 52 150 1.63e-24 100
MS.gene00284.t1 MTR_2g436380 70.492 61 18 0 203 263 1 61 5.09e-22 95.1
MS.gene00284.t1 MTR_3g085240 44.944 89 32 1 262 350 176 247 5.24e-16 77.4
MS.gene00284.t1 MTR_3g085240 34.899 149 83 4 7 151 33 171 1.05e-12 67.8
MS.gene00284.t1 MTR_8g012210 22.180 266 192 5 73 333 62 317 1.10e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00284.t1 AT5G07900 35.030 334 208 5 29 356 69 399 3.21e-64 210
MS.gene00284.t1 AT1G21150 31.475 305 202 3 24 324 15 316 5.13e-43 153
MS.gene00284.t1 AT1G21150 32.000 300 197 3 29 324 56 352 5.78e-43 154
MS.gene00284.t1 AT1G21150 32.000 300 197 3 29 324 120 416 2.75e-42 153
MS.gene00284.t1 AT1G61970 27.298 359 210 9 27 343 50 399 8.79e-30 119
MS.gene00284.t1 AT1G61970 27.298 359 210 9 27 343 50 399 8.79e-30 119
MS.gene00284.t1 AT1G61970 27.298 359 210 9 27 343 50 399 8.79e-30 119
MS.gene00284.t1 AT1G61970 27.298 359 210 9 27 343 50 399 8.79e-30 119
MS.gene00284.t1 AT1G61970 27.298 359 210 9 27 343 50 399 8.79e-30 119
MS.gene00284.t1 AT1G61970 27.298 359 210 9 27 343 50 399 8.79e-30 119
MS.gene00284.t1 AT1G61970 27.298 359 210 9 27 343 50 399 8.79e-30 119
MS.gene00284.t1 AT1G61980 28.492 358 205 9 29 344 52 400 9.33e-30 119
MS.gene00284.t1 AT1G61980 28.492 358 205 9 29 344 52 400 9.33e-30 119
MS.gene00284.t1 AT1G61980 28.492 358 205 9 29 344 52 400 9.33e-30 119
MS.gene00284.t1 AT5G64950 27.070 314 210 5 11 315 25 328 4.02e-29 116
MS.gene00284.t1 AT1G61990 28.363 342 184 8 29 327 52 375 4.63e-29 117
MS.gene00284.t1 AT1G61990 28.363 342 184 8 29 327 52 375 4.63e-29 117
MS.gene00284.t1 AT3G46950 30.435 253 161 6 27 275 50 291 7.69e-26 108
MS.gene00284.t1 AT1G62120 27.246 334 193 8 29 320 56 381 8.13e-26 108
MS.gene00284.t1 AT1G62010 26.935 323 186 6 42 320 43 359 3.30e-23 100
MS.gene00284.t1 AT5G23930 25.840 387 205 11 29 341 55 433 6.59e-22 97.1
MS.gene00284.t1 AT1G62085 25.410 366 192 10 29 319 55 414 1.03e-21 96.7
MS.gene00284.t1 AT1G62085 25.410 366 192 10 29 319 55 414 1.03e-21 96.7
MS.gene00284.t1 AT1G61960 28.125 256 174 4 21 272 44 293 4.18e-20 91.7
MS.gene00284.t1 AT1G62110 26.800 250 172 4 29 273 52 295 2.40e-18 86.7
MS.gene00284.t1 AT1G62150 24.194 248 183 3 27 272 56 300 1.24e-16 81.6

Find 82 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTACCTCATCAACAATTT+TGG 0.173604 2.2:+52660952 MS.gene00284:CDS
TTTCCTGCAACCCTTCTAAA+AGG 0.220666 2.2:+52661127 MS.gene00284:CDS
TTAATTTAGTGATGAACTTT+TGG 0.234643 2.2:+52661670 MS.gene00284:CDS
GGTGGAGGAATTAAAGGATT+TGG 0.242361 2.2:+52661473 MS.gene00284:CDS
ATCAACTTCTTTAGAAACTA+TGG 0.267482 2.2:+52661054 MS.gene00284:CDS
GAAACTGGTGGAGGAATTAA+AGG 0.296949 2.2:+52661467 MS.gene00284:CDS
GTGGAGGAATTAAAGGATTT+GGG 0.314616 2.2:+52661474 MS.gene00284:CDS
AACAAATGGGTGATGGAAAC+AGG 0.324509 2.2:-52660647 None:intergenic
AGACCAACCCCACTTCTTAA+AGG 0.324708 2.2:-52661583 None:intergenic
GTTTCTTGATAAGTGTATAA+AGG 0.325915 2.2:+52661866 MS.gene00284:CDS
TTCGAAAAGAAATGGAAATA+TGG 0.345689 2.2:-52660678 None:intergenic
TTAAAAGAATGCTTTGGTTA+AGG 0.353006 2.2:+52661409 MS.gene00284:CDS
CCTGTTAGTTCGAAAAGAAA+TGG 0.356466 2.2:-52660686 None:intergenic
TAGCCATGGTTCCTTTGAAA+TGG 0.395647 2.2:-52661103 None:intergenic
TTTCTTGATAAGTGTATAAA+GGG 0.396797 2.2:+52661867 MS.gene00284:CDS
ATGTTCTACAAGCATTTAGA+AGG 0.400394 2.2:+52661613 MS.gene00284:CDS
GTCAGAGGTAGAAGCGCCTT+TGG 0.405353 2.2:-52661178 None:intergenic
TGCGTATGTGGAGCAAAGTC+TGG 0.409089 2.2:-52660995 None:intergenic
TTGCAATATCTTCTGAAGAA+AGG 0.412458 2.2:+52661789 MS.gene00284:CDS
TGAAATGGTAAGACGTAGTT+GGG 0.418042 2.2:-52661088 None:intergenic
TAAGTGTATAAAGGGTATTA+AGG 0.419835 2.2:+52661875 MS.gene00284:CDS
GAATCTATAAATCAATTGAT+AGG 0.434987 2.2:-52661268 None:intergenic
ATTCGCAATCCATCTTTCTT+CGG 0.435209 2.2:+52661324 MS.gene00284:CDS
CAAACATTAAAAGAATGCTT+TGG 0.436839 2.2:+52661403 MS.gene00284:CDS
CTTAAAACTAATTGCGTATG+TGG 0.438575 2.2:-52661007 None:intergenic
TTATCTATTAAAGTTGTATG+AGG 0.446208 2.2:+52661905 MS.gene00284:CDS
TTGGGTCAATCAGTTAGGTT+GGG 0.447898 2.2:+52661689 MS.gene00284:CDS
GACACATGACATGCTGAAAC+TGG 0.449219 2.2:+52661452 MS.gene00284:CDS
ATATGGAAGCTGAGAACAAA+TGG 0.453481 2.2:-52660661 None:intergenic
TTTCTTTAAGTTTCGAAAAG+AGG 0.455763 2.2:+52661745 MS.gene00284:CDS
TATAAATCAATTGATAGGCT+TGG 0.456794 2.2:-52661263 None:intergenic
AAGAAGTTGATAACAGAGTC+AGG 0.461266 2.2:-52661042 None:intergenic
TTGAAATGGTAAGACGTAGT+TGG 0.462482 2.2:-52661089 None:intergenic
TTTGGGTCAATCAGTTAGGT+TGG 0.464253 2.2:+52661688 MS.gene00284:CDS
AATGCTTTGGTTAAGGAGTC+GGG 0.471203 2.2:+52661416 MS.gene00284:CDS
TTCCTGCAACCCTTCTAAAA+GGG 0.482738 2.2:+52661128 MS.gene00284:CDS
GTTTGAGTCGGCCACTCCAT+TGG 0.486888 2.2:-52661385 None:intergenic
GAATGCTTTGGTTAAGGAGT+CGG 0.487572 2.2:+52661415 MS.gene00284:CDS
ATCTGTAAGGAAAACATTGT+GGG 0.488825 2.2:+52661545 MS.gene00284:CDS
TTCTTTAAGTTTCGAAAAGA+GGG 0.495393 2.2:+52661746 MS.gene00284:CDS
AAAGTCTGGAAGCAGATTGT+GGG 0.509506 2.2:-52660981 None:intergenic
CGAGCGTCTCCGAAGAAAGA+TGG 0.514763 2.2:-52661333 None:intergenic
TGCATGCCAAACTATCTGTA+AGG 0.519763 2.2:+52661532 MS.gene00284:CDS
CAAAGTCTGGAAGCAGATTG+TGG 0.519859 2.2:-52660982 None:intergenic
TCGAAAAGAGGGTCCTTCCA+AGG 0.522254 2.2:+52661757 MS.gene00284:CDS
GAGGTAGGAGACGGCAAAAG+AGG 0.528049 2.2:-52660938 None:intergenic
ACTACGTCTTACCATTTCAA+AGG 0.541064 2.2:+52661092 MS.gene00284:CDS
ATTAGATTGCTGATTGCCAA+TGG 0.546889 2.2:+52661369 MS.gene00284:CDS
AAACTGATGGTCCTTTGGCA+AGG 0.547751 2.2:-52661722 None:intergenic
TATGGAAGCTGAGAACAAAT+GGG 0.550479 2.2:-52660660 None:intergenic
AGTCGATGCCTTTAAGAAGT+GGG 0.559365 2.2:+52661575 MS.gene00284:CDS
GATGCACTTGCCCTTGCCAA+AGG 0.563336 2.2:+52661711 MS.gene00284:CDS
TATTGCAATACAGAGGCCCT+TGG 0.565124 2.2:-52661774 None:intergenic
AACTGATGGTCCTTTGGCAA+GGG 0.571808 2.2:-52661721 None:intergenic
TAGATTCTTGCAATCAGACA+AGG 0.576536 2.2:+52661284 MS.gene00284:CDS
CGAAAAGAGGGTCCTTCCAA+GGG 0.576545 2.2:+52661758 MS.gene00284:CDS
AAGTCGATGCCTTTAAGAAG+TGG 0.577016 2.2:+52661574 MS.gene00284:CDS
TATCTGTAAGGAAAACATTG+TGG 0.577111 2.2:+52661544 MS.gene00284:CDS
GCCAAAATTGTTGATGAGGT+AGG 0.577466 2.2:-52660953 None:intergenic
AGCTGAGAACAAATGGGTGA+TGG 0.591753 2.2:-52660654 None:intergenic
AAGGCAACCACATTGTATGT+TGG 0.594814 2.2:+52661632 MS.gene00284:CDS
GCAATACAGAGGCCCTTGGA+AGG 0.596897 2.2:-52661770 None:intergenic
AAAAGCCAAAATTGTTGATG+AGG 0.598384 2.2:-52660957 None:intergenic
ATGCCTTTAAGAAGTGGGGT+TGG 0.598873 2.2:+52661580 MS.gene00284:CDS
GTCGATGCCTTTAAGAAGTG+GGG 0.602513 2.2:+52661576 MS.gene00284:CDS
GGCATGCAATGCTACACCAA+AGG 0.603475 2.2:-52661517 None:intergenic
GAAAATGTTAACAATGTCAG+AGG 0.609432 2.2:-52661193 None:intergenic
ACAAATGGGTGATGGAAACA+GGG 0.613060 2.2:-52660646 None:intergenic
TTTCTTCGGAGACGCTCGTG+TGG 0.619956 2.2:+52661338 MS.gene00284:CDS
ATGGGTGATGGAAACAGGGG+CGG 0.621576 2.2:-52660642 None:intergenic
ATTGTTGATGAGGTAGGAGA+CGG 0.624106 2.2:-52660947 None:intergenic
AGTTTCAGCATGTCATGTGT+CGG 0.628766 2.2:-52661450 None:intergenic
ACTCAATCTTGCTTACACCA+TGG 0.635583 2.2:+52661932 MS.gene00284:CDS
GGGTTGCAGGAAAGTAGCCA+TGG 0.641042 2.2:-52661117 None:intergenic
TTACCATTTCAAAGGAACCA+TGG 0.651356 2.2:+52661100 MS.gene00284:CDS
CAGAAGATATTGCAATACAG+AGG 0.669772 2.2:-52661781 None:intergenic
AAGTCTGGAAGCAGATTGTG+GGG 0.672466 2.2:-52660980 None:intergenic
ATTGCTGATTGCCAATGGAG+TGG 0.672936 2.2:+52661374 MS.gene00284:CDS
ACATGACATGCTGAAACTGG+TGG 0.678985 2.2:+52661455 MS.gene00284:CDS
TGACATGCTGAAACTGGTGG+AGG 0.688782 2.2:+52661458 MS.gene00284:CDS
CAAATGGGTGATGGAAACAG+GGG 0.707305 2.2:-52660645 None:intergenic
ATGGATACCAACATACAATG+TGG 0.711327 2.2:-52661639 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CACTAAATTAATTTTATCAA+TGG - chr2.2:52661661-52661680 None:intergenic 15.0%
!! AAACTTAAAGAAAAAACTGA+TGG - chr2.2:52661738-52661757 None:intergenic 20.0%
!! GAATCTATAAATCAATTGAT+AGG - chr2.2:52661271-52661290 None:intergenic 20.0%
!! TTATCTATTAAAGTTGTATG+AGG + chr2.2:52661905-52661924 MS.gene00284:CDS 20.0%
!! TTTCTTGATAAGTGTATAAA+GGG + chr2.2:52661867-52661886 MS.gene00284:CDS 20.0%
!!! CTTGGATAATTTTATTATTG+AGG - chr2.2:52661248-52661267 None:intergenic 20.0%
!!! TAATTTAGTGATGAACTTTT+GGG + chr2.2:52661671-52661690 MS.gene00284:CDS 20.0%
!!! TTAATTTAGTGATGAACTTT+TGG + chr2.2:52661670-52661689 MS.gene00284:CDS 20.0%
! CAAACATTAAAAGAATGCTT+TGG + chr2.2:52661403-52661422 MS.gene00284:CDS 25.0%
! CAATCAAATTCCAAGAATTA+GGG + chr2.2:52660727-52660746 MS.gene00284:intron 25.0%
! GAGAGAAAAAATTGAAACTT+TGG - chr2.2:52661159-52661178 None:intergenic 25.0%
! GGTAATAATGTTGAAAAAGA+GGG - chr2.2:52660867-52660886 None:intergenic 25.0%
! GTTTCTTGATAAGTGTATAA+AGG + chr2.2:52661866-52661885 MS.gene00284:CDS 25.0%
! TATAAATCAATTGATAGGCT+TGG - chr2.2:52661266-52661285 None:intergenic 25.0%
! TTAAAAGAATGCTTTGGTTA+AGG + chr2.2:52661409-52661428 MS.gene00284:CDS 25.0%
! TTCGAAAAGAAATGGAAATA+TGG - chr2.2:52660681-52660700 None:intergenic 25.0%
!! ATCAACTTCTTTAGAAACTA+TGG + chr2.2:52661054-52661073 MS.gene00284:CDS 25.0%
!! CATTCTTTTAATGTTTGAGT+CGG - chr2.2:52661400-52661419 None:intergenic 25.0%
!! TTCTTTAAGTTTCGAAAAGA+GGG + chr2.2:52661746-52661765 MS.gene00284:CDS 25.0%
!! TTTCTTTAAGTTTCGAAAAG+AGG + chr2.2:52661745-52661764 MS.gene00284:CDS 25.0%
!!! TAAGTGTATAAAGGGTATTA+AGG + chr2.2:52661875-52661894 MS.gene00284:CDS 25.0%
!!! TTTCAATTTTTTCTCTCCAA+AGG + chr2.2:52661162-52661181 MS.gene00284:CDS 25.0%
AAAAGCCAAAATTGTTGATG+AGG - chr2.2:52660960-52660979 None:intergenic 30.0%
AATGTTGAAAAAGAGGGTTA+GGG - chr2.2:52660861-52660880 None:intergenic 30.0%
ATCTGTAAGGAAAACATTGT+GGG + chr2.2:52661545-52661564 MS.gene00284:CDS 30.0%
ATGTTCTACAAGCATTTAGA+AGG + chr2.2:52661613-52661632 MS.gene00284:CDS 30.0%
CTTAAAACTAATTGCGTATG+TGG - chr2.2:52661010-52661029 None:intergenic 30.0%
GAAAAATGGAGAGAAAATGT+TGG - chr2.2:52660898-52660917 None:intergenic 30.0%
GAAAATGTTAACAATGTCAG+AGG - chr2.2:52661196-52661215 None:intergenic 30.0%
GCAATCAAATTCCAAGAATT+AGG + chr2.2:52660726-52660745 MS.gene00284:intron 30.0%
GGGTAATAATGTTGAAAAAG+AGG - chr2.2:52660868-52660887 None:intergenic 30.0%
TAATGTTGAAAAAGAGGGTT+AGG - chr2.2:52660862-52660881 None:intergenic 30.0%
TATCTGTAAGGAAAACATTG+TGG + chr2.2:52661544-52661563 MS.gene00284:CDS 30.0%
TGAATTTGAACCCTAATTCT+TGG - chr2.2:52660740-52660759 None:intergenic 30.0%
! TGTTTTCCTTACAGATAGTT+TGG - chr2.2:52661541-52661560 None:intergenic 30.0%
! TTATCAAGAAACAGCTTTTC+AGG - chr2.2:52661858-52661877 None:intergenic 30.0%
! TTGCAATATCTTCTGAAGAA+AGG + chr2.2:52661789-52661808 MS.gene00284:CDS 30.0%
!! TATTATTGAGGCTTGTTTTC+AGG - chr2.2:52661236-52661255 None:intergenic 30.0%
ACTACGTCTTACCATTTCAA+AGG + chr2.2:52661092-52661111 MS.gene00284:CDS 35.0%
AGAAAAAACTGATGGTCCTT+TGG - chr2.2:52661730-52661749 None:intergenic 35.0%
ATATGGAAGCTGAGAACAAA+TGG - chr2.2:52660664-52660683 None:intergenic 35.0%
ATGGATACCAACATACAATG+TGG - chr2.2:52661642-52661661 None:intergenic 35.0%
ATTCGCAATCCATCTTTCTT+CGG + chr2.2:52661324-52661343 MS.gene00284:CDS 35.0%
CAGAAGATATTGCAATACAG+AGG - chr2.2:52661784-52661803 None:intergenic 35.0%
CCTGTTAGTTCGAAAAGAAA+TGG - chr2.2:52660689-52660708 None:intergenic 35.0%
GAAGAAAGGTTTGCGAAAAA+AGG + chr2.2:52661803-52661822 MS.gene00284:CDS 35.0%
GCTACTTCAAAAACAACCTT+TGG + chr2.2:52661501-52661520 MS.gene00284:CDS 35.0%
GTGGAGGAATTAAAGGATTT+GGG + chr2.2:52661474-52661493 MS.gene00284:CDS 35.0%
TAGATTCTTGCAATCAGACA+AGG + chr2.2:52661284-52661303 MS.gene00284:CDS 35.0%
TATGGAAGCTGAGAACAAAT+GGG - chr2.2:52660663-52660682 None:intergenic 35.0%
TGAAATGGTAAGACGTAGTT+GGG - chr2.2:52661091-52661110 None:intergenic 35.0%
TTACCATTTCAAAGGAACCA+TGG + chr2.2:52661100-52661119 MS.gene00284:CDS 35.0%
TTGAAATGGTAAGACGTAGT+TGG - chr2.2:52661092-52661111 None:intergenic 35.0%
! ATTAGATTGCTGATTGCCAA+TGG + chr2.2:52661369-52661388 MS.gene00284:CDS 35.0%
! CCATTTCTTTTCGAACTAAC+AGG + chr2.2:52660686-52660705 MS.gene00284:CDS 35.0%
! GATAACAGAGTCAGGTTTTT+GGG - chr2.2:52661037-52661056 None:intergenic 35.0%
! TAGAGCTTTTCTCTATCTCA+AGG + chr2.2:52660810-52660829 MS.gene00284:intron 35.0%
! TCCTACCTCATCAACAATTT+TGG + chr2.2:52660952-52660971 MS.gene00284:CDS 35.0%
! TGATAACAGAGTCAGGTTTT+TGG - chr2.2:52661038-52661057 None:intergenic 35.0%
! TTTGGCAAAACCCTTTTAGA+AGG - chr2.2:52661141-52661160 None:intergenic 35.0%
!! AACTTTTGGGTCAATCAGTT+AGG + chr2.2:52661684-52661703 MS.gene00284:CDS 35.0%
!! AAGAAGTTGATAACAGAGTC+AGG - chr2.2:52661045-52661064 None:intergenic 35.0%
!! AGAGAAAATGTTGGTGATGA+TGG - chr2.2:52660889-52660908 None:intergenic 35.0%
!! GAGAAAATGTTGGTGATGAT+GGG - chr2.2:52660888-52660907 None:intergenic 35.0%
!! TTGGCAAAACCCTTTTAGAA+GGG - chr2.2:52661140-52661159 None:intergenic 35.0%
AAAGTCTGGAAGCAGATTGT+GGG - chr2.2:52660984-52661003 None:intergenic 40.0%
AAGGCAACCACATTGTATGT+TGG + chr2.2:52661632-52661651 MS.gene00284:CDS 40.0%
AATGCTTTGGTTAAGGAGTC+GGG + chr2.2:52661416-52661435 MS.gene00284:CDS 40.0%
ACTCAATCTTGCTTACACCA+TGG + chr2.2:52661932-52661951 MS.gene00284:CDS 40.0%
AGAGAAAAGCTCTATGACGA+TGG - chr2.2:52660804-52660823 None:intergenic 40.0%
AGAGGTTGAATCTGAAGAGT+TGG - chr2.2:52660923-52660942 None:intergenic 40.0%
AGTTTCAGCATGTCATGTGT+CGG - chr2.2:52661453-52661472 None:intergenic 40.0%
GAAAAAGAGGGTTAGGGTTA+GGG - chr2.2:52660855-52660874 None:intergenic 40.0%
GAAACTGGTGGAGGAATTAA+AGG + chr2.2:52661467-52661486 MS.gene00284:CDS 40.0%
GAATGCTTTGGTTAAGGAGT+CGG + chr2.2:52661415-52661434 MS.gene00284:CDS 40.0%
GGTGGAGGAATTAAAGGATT+TGG + chr2.2:52661473-52661492 MS.gene00284:CDS 40.0%
TGAAAAAGAGGGTTAGGGTT+AGG - chr2.2:52660856-52660875 None:intergenic 40.0%
TGCATGCCAAACTATCTGTA+AGG + chr2.2:52661532-52661551 MS.gene00284:CDS 40.0%
TTGGGTCAATCAGTTAGGTT+GGG + chr2.2:52661689-52661708 MS.gene00284:CDS 40.0%
TTTCCTGCAACCCTTCTAAA+AGG + chr2.2:52661127-52661146 MS.gene00284:CDS 40.0%
TTTGGGTCAATCAGTTAGGT+TGG + chr2.2:52661688-52661707 MS.gene00284:CDS 40.0%
! AAGTCGATGCCTTTAAGAAG+TGG + chr2.2:52661574-52661593 MS.gene00284:CDS 40.0%
! AGTCGATGCCTTTAAGAAGT+GGG + chr2.2:52661575-52661594 MS.gene00284:CDS 40.0%
! ATTGTTGATGAGGTAGGAGA+CGG - chr2.2:52660950-52660969 None:intergenic 40.0%
! GCCAAAATTGTTGATGAGGT+AGG - chr2.2:52660956-52660975 None:intergenic 40.0%
! TAGCCATGGTTCCTTTGAAA+TGG - chr2.2:52661106-52661125 None:intergenic 40.0%
! TTCCTGCAACCCTTCTAAAA+GGG + chr2.2:52661128-52661147 MS.gene00284:CDS 40.0%
!! AACAAATGGGTGATGGAAAC+AGG - chr2.2:52660650-52660669 None:intergenic 40.0%
!! ACAAATGGGTGATGGAAACA+GGG - chr2.2:52660649-52660668 None:intergenic 40.0%
!! AGCTTTTCAGGCACTACAAA+TGG - chr2.2:52661846-52661865 None:intergenic 40.0%
!! AGGCTTGTTTTCAGGATGTA+GGG - chr2.2:52661228-52661247 None:intergenic 40.0%
!! AGGGTTTGGTGAGAAAGTTA+AGG - chr2.2:52660836-52660855 None:intergenic 40.0%
!! CTGAAGAGTTGGTGGAAAAA+TGG - chr2.2:52660912-52660931 None:intergenic 40.0%
AAACTGATGGTCCTTTGGCA+AGG - chr2.2:52661725-52661744 None:intergenic 45.0%
AACTGATGGTCCTTTGGCAA+GGG - chr2.2:52661724-52661743 None:intergenic 45.0%
AAGTCTGGAAGCAGATTGTG+GGG - chr2.2:52660983-52661002 None:intergenic 45.0%
ACATGACATGCTGAAACTGG+TGG + chr2.2:52661455-52661474 MS.gene00284:CDS 45.0%
AGACCAACCCCACTTCTTAA+AGG - chr2.2:52661586-52661605 None:intergenic 45.0%
AGCTGAGAACAAATGGGTGA+TGG - chr2.2:52660657-52660676 None:intergenic 45.0%
CAAAGTCTGGAAGCAGATTG+TGG - chr2.2:52660985-52661004 None:intergenic 45.0%
GACACATGACATGCTGAAAC+TGG + chr2.2:52661452-52661471 MS.gene00284:CDS 45.0%
GGTTGAATCTGAAGAGTTGG+TGG - chr2.2:52660920-52660939 None:intergenic 45.0%
TATTGCAATACAGAGGCCCT+TGG - chr2.2:52661777-52661796 None:intergenic 45.0%
! ATGCCTTTAAGAAGTGGGGT+TGG + chr2.2:52661580-52661599 MS.gene00284:CDS 45.0%
! ATTGCTGATTGCCAATGGAG+TGG + chr2.2:52661374-52661393 MS.gene00284:CDS 45.0%
! CGATGTGCATGTTTTGTCCA+TGG - chr2.2:52661952-52661971 None:intergenic 45.0%
! GTCGATGCCTTTAAGAAGTG+GGG + chr2.2:52661576-52661595 MS.gene00284:CDS 45.0%
!! AACCCTTTTAGAAGGGTTGC+AGG - chr2.2:52661133-52661152 None:intergenic 45.0%
!! CAAATGGGTGATGGAAACAG+GGG - chr2.2:52660648-52660667 None:intergenic 45.0%
!! GAGGCTTGTTTTCAGGATGT+AGG - chr2.2:52661229-52661248 None:intergenic 45.0%
!! GGCTTGTTTTCAGGATGTAG+GGG - chr2.2:52661227-52661246 None:intergenic 45.0%
AGAGGGTTAGGGTTAGGGTT+TGG - chr2.2:52660850-52660869 None:intergenic 50.0%
CGAAAAGAGGGTCCTTCCAA+GGG + chr2.2:52661758-52661777 MS.gene00284:CDS 50.0%
GGCATGCAATGCTACACCAA+AGG - chr2.2:52661520-52661539 None:intergenic 50.0%
TCGAAAAGAGGGTCCTTCCA+AGG + chr2.2:52661757-52661776 MS.gene00284:CDS 50.0%
TGACATGCTGAAACTGGTGG+AGG + chr2.2:52661458-52661477 MS.gene00284:CDS 50.0%
TGCGTATGTGGAGCAAAGTC+TGG - chr2.2:52660998-52661017 None:intergenic 50.0%
CGAGCGTCTCCGAAGAAAGA+TGG - chr2.2:52661336-52661355 None:intergenic 55.0%
GAGGTAGGAGACGGCAAAAG+AGG - chr2.2:52660941-52660960 None:intergenic 55.0%
GATGCACTTGCCCTTGCCAA+AGG + chr2.2:52661711-52661730 MS.gene00284:CDS 55.0%
GCAATACAGAGGCCCTTGGA+AGG - chr2.2:52661773-52661792 None:intergenic 55.0%
GGGTTGCAGGAAAGTAGCCA+TGG - chr2.2:52661120-52661139 None:intergenic 55.0%
GTTTGAGTCGGCCACTCCAT+TGG - chr2.2:52661388-52661407 None:intergenic 55.0%
TTTCTTCGGAGACGCTCGTG+TGG + chr2.2:52661338-52661357 MS.gene00284:CDS 55.0%
!! ATGGGTGATGGAAACAGGGG+CGG - chr2.2:52660645-52660664 None:intergenic 55.0%
!! GTCAGAGGTAGAAGCGCCTT+TGG - chr2.2:52661181-52661200 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 52660632 52661974 52660632 ID=MS.gene00284
chr2.2 mRNA 52660632 52661974 52660632 ID=MS.gene00284.t1;Parent=MS.gene00284
chr2.2 exon 52660632 52660707 52660632 ID=MS.gene00284.t1.exon1;Parent=MS.gene00284.t1
chr2.2 CDS 52660632 52660707 52660632 ID=cds.MS.gene00284.t1;Parent=MS.gene00284.t1
chr2.2 exon 52660932 52661974 52660932 ID=MS.gene00284.t1.exon2;Parent=MS.gene00284.t1
chr2.2 CDS 52660932 52661974 52660932 ID=cds.MS.gene00284.t1;Parent=MS.gene00284.t1
Gene Sequence

>MS.gene00284

ATGTCTAGATCCGCCCCTGTTTCCATCACCCATTTGTTCTCAGCTTCCATATTTCCATTTCTTTTCGAACTAACAGGTAAGTTACTCATTCTGTGCAATCAAATTCCAAGAATTAGGGTTCAAATTCATATGCTTTAACATTAATTTATCATTTTCAAATGTTGAATATCCATCGTCATAGAGCTTTTCTCTATCTCAAGGCCTTAACTTTCTCACCAAACCCTAACCCTAACCCTCTTTTTCAACATTATTACCCATCATCACCAACATTTTCTCTCCATTTTTCCACCAACTCTTCAGATTCAACCTCTTTTGCCGTCTCCTACCTCATCAACAATTTTGGCTTTTCCCCACAATCTGCTTCCAGACTTTGCTCCACATACGCAATTAGTTTTAAGACTGCCCAAAAACCTGACTCTGTTATCAACTTCTTTAGAAACTATGGTTTTTCAGATTCCCAACTACGTCTTACCATTTCAAAGGAACCATGGCTACTTTCCTGCAACCCTTCTAAAAGGGTTTTGCCAAAGTTTCAATTTTTTCTCTCCAAAGGCGCTTCTACCTCTGACATTGTTAACATTTTCACTAAGAGCCCCTACATCCTGAAAACAAGCCTCAATAATAAAATTATCCAAGCCTATCAATTGATTTATAGATTCTTGCAATCAGACAAGGACATTATTGATTGTGTAATTCGCAATCCATCTTTCTTCGGAGACGCTCGTGTGGTATCTAACATTAGATTGCTGATTGCCAATGGAGTGGCCGACTCAAACATTAAAAGAATGCTTTGGTTAAGGAGTCGGGCATTTCAGACACCGACACATGACATGCTGAAACTGGTGGAGGAATTAAAGGATTTGGGTTTTGCTACTTCAAAAACAACCTTTGGTGTAGCATTGCATGCCAAACTATCTGTAAGGAAAACATTGTGGGAAGAGAAAGTCGATGCCTTTAAGAAGTGGGGTTGGTCTGATGAAGATGTTCTACAAGCATTTAGAAGGCAACCACATTGTATGTTGGTATCCATTGATAAAATTAATTTAGTGATGAACTTTTGGGTCAATCAGTTAGGTTGGGATGCACTTGCCCTTGCCAAAGGACCATCAGTTTTTTCTTTAAGTTTCGAAAAGAGGGTCCTTCCAAGGGCCTCTGTATTGCAATATCTTCTGAAGAAAGGTTTGCGAAAAAAGGATGCAAGCTTAACTTGTCCATTTGTAGTGCCTGAAAAGCTGTTTCTTGATAAGTGTATAAAGGGTATTAAGGAGTCTTCTTATCTATTAAAGTTGTATGAGGAAAAACTCAATCTTGCTTACACCATGGACAAAACATGCACATCGTGA
Protein sequence

>MS.gene00284.t1

MSRSAPVSITHLFSASIFPFLFELTDSTSFAVSYLINNFGFSPQSASRLCSTYAISFKTAQKPDSVINFFRNYGFSDSQLRLTISKEPWLLSCNPSKRVLPKFQFFLSKGASTSDIVNIFTKSPYILKTSLNNKIIQAYQLIYRFLQSDKDIIDCVIRNPSFFGDARVVSNIRLLIANGVADSNIKRMLWLRSRAFQTPTHDMLKLVEELKDLGFATSKTTFGVALHAKLSVRKTLWEEKVDAFKKWGWSDEDVLQAFRRQPHCMLVSIDKINLVMNFWVNQLGWDALALAKGPSVFSLSFEKRVLPRASVLQYLLKKGLRKKDASLTCPFVVPEKLFLDKCIKGIKESSYLLKLYEEKLNLAYTMDKTCTS