AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene52432

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52432.t1 MTR_2g437170 67.092 392 76 3 15 355 23 412 0.0 513
MS.gene52432.t1 MTR_2g437150 63.446 383 87 3 15 346 23 403 2.90e-166 470
MS.gene52432.t1 MTR_2g437160 60.050 403 104 4 1 349 12 411 5.65e-159 452
MS.gene52432.t1 MTR_2g437960 60.488 410 103 5 1 355 1 406 9.61e-157 446
MS.gene52432.t1 MTR_2g437960 60.442 407 102 5 1 352 1 403 3.63e-154 440
MS.gene52432.t1 MTR_2g437940 61.257 382 109 5 1 353 1 372 3.93e-151 431
MS.gene52432.t1 MTR_2g437100 59.126 389 103 4 1 333 7 395 3.29e-148 424
MS.gene52432.t1 MTR_2g437180 57.568 403 104 6 1 346 1 393 1.47e-146 420
MS.gene52432.t1 MTR_2g437120 57.711 402 106 5 1 345 1 395 6.55e-145 416
MS.gene52432.t1 MTR_2g438010 57.937 378 109 3 22 353 48 421 1.68e-144 416
MS.gene52432.t1 MTR_2g437160 60.224 357 86 3 1 349 12 320 9.96e-139 397
MS.gene52432.t1 MTR_2g437990 57.029 377 111 4 22 352 28 399 1.37e-135 393
MS.gene52432.t1 MTR_2g076320 56.349 378 115 3 22 353 28 401 1.90e-134 389
MS.gene52432.t1 MTR_2g437240 66.065 277 82 2 87 353 142 416 5.07e-119 350
MS.gene52432.t1 MTR_2g437240 39.490 157 70 7 24 168 18 161 1.72e-15 77.4
MS.gene52432.t1 MTR_2g437130 52.320 388 119 7 13 346 9 384 1.02e-118 348
MS.gene52432.t1 MTR_2g437200 64.260 277 79 2 67 333 132 398 2.72e-112 332
MS.gene52432.t1 MTR_2g437200 42.138 159 65 5 30 173 20 166 3.51e-21 94.0
MS.gene52432.t1 MTR_2g438020 68.354 237 72 1 116 352 220 453 3.01e-105 318
MS.gene52432.t1 MTR_2g438020 51.351 74 34 1 45 118 70 141 1.69e-14 74.7
MS.gene52432.t1 MTR_2g437020 45.038 393 149 6 1 341 1 378 5.65e-95 288
MS.gene52432.t1 MTR_2g436440 43.622 392 154 6 6 345 12 388 3.56e-94 286
MS.gene52432.t1 MTR_2g437080 43.243 370 151 4 26 345 22 382 1.76e-92 281
MS.gene52432.t1 MTR_2g437060 44.414 367 148 4 21 341 37 393 1.00e-91 280
MS.gene52432.t1 MTR_2g437030 44.886 352 145 2 40 345 120 468 9.60e-91 280
MS.gene52432.t1 MTR_2g436400 42.733 344 148 2 40 337 41 381 2.54e-84 260
MS.gene52432.t1 MTR_2g437040 43.137 357 146 4 39 345 33 382 3.04e-84 260
MS.gene52432.t1 MTR_2g437260 40.669 359 156 5 30 340 24 373 1.21e-81 254
MS.gene52432.t1 MTR_4g119550 39.655 348 158 4 41 341 46 388 4.65e-79 247
MS.gene52432.t1 MTR_4g120380 41.124 338 154 4 36 330 34 369 1.33e-74 235
MS.gene52432.t1 MTR_2g436460 41.935 341 150 6 39 334 40 377 1.73e-70 225
MS.gene52432.t1 MTR_4g120380 41.379 319 142 4 36 311 34 350 4.88e-69 222
MS.gene52432.t1 MTR_4g120380 31.579 171 95 6 145 298 251 416 5.68e-14 72.8
MS.gene52432.t1 MTR_4g119580 38.938 339 156 4 38 330 36 369 5.63e-68 218
MS.gene52432.t1 MTR_2g437090 51.462 171 83 0 176 346 1 171 3.19e-58 186
MS.gene52432.t1 MTR_2g019840 35.310 371 172 9 23 333 9 371 6.19e-55 185
MS.gene52432.t1 MTR_2g019810 36.842 342 149 8 46 333 31 359 4.50e-54 182
MS.gene52432.t1 MTR_4g119570 35.814 215 102 3 115 329 49 227 2.90e-36 131
MS.gene52432.t1 MTR_3g450500 23.836 365 224 5 15 330 10 369 8.85e-29 115
MS.gene52432.t1 MTR_4g007490 25.581 344 206 5 35 330 26 367 8.25e-28 112
MS.gene52432.t1 MTR_3g085240 56.522 92 23 1 233 324 174 248 3.78e-23 97.1
MS.gene52432.t1 MTR_4g049400 42.742 124 63 3 1 118 1 122 8.24e-23 95.9
MS.gene52432.t1 MTR_2g436370 49.367 79 40 0 40 118 40 118 2.69e-16 77.0
MS.gene52432.t1 MTR_2g436380 60.000 60 24 0 176 235 1 60 2.89e-16 78.6
MS.gene52432.t1 MTR_8g081000 23.397 312 223 5 33 330 75 384 1.20e-15 77.8
MS.gene52432.t1 MTR_8g081000 23.397 312 223 5 33 330 75 384 1.25e-15 77.8
MS.gene52432.t1 MTR_8g081000 23.397 312 223 5 33 330 75 384 1.39e-15 77.8
MS.gene52432.t1 MTR_8g080990 24.528 318 219 8 28 327 54 368 3.40e-15 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52432.t1 AT5G07900 28.954 373 201 9 16 330 33 399 8.95e-38 140
MS.gene52432.t1 AT1G21150 26.667 330 191 5 48 328 57 384 2.08e-28 114
MS.gene52432.t1 AT1G21150 26.347 334 195 5 44 328 17 348 2.12e-28 113
MS.gene52432.t1 AT1G21150 26.667 330 191 5 48 328 121 448 4.98e-28 114
MS.gene52432.t1 AT5G64950 26.124 356 204 9 30 330 24 375 2.51e-20 91.7
MS.gene52432.t1 AT1G61970 22.571 350 187 9 48 316 53 399 3.58e-12 67.4
MS.gene52432.t1 AT1G61970 22.571 350 187 9 48 316 53 399 3.58e-12 67.4
MS.gene52432.t1 AT1G61970 22.571 350 187 9 48 316 53 399 3.58e-12 67.4
MS.gene52432.t1 AT1G61970 22.571 350 187 9 48 316 53 399 3.58e-12 67.4
MS.gene52432.t1 AT1G61970 22.571 350 187 9 48 316 53 399 3.58e-12 67.4
MS.gene52432.t1 AT1G61970 22.571 350 187 9 48 316 53 399 3.58e-12 67.4
MS.gene52432.t1 AT1G61970 22.571 350 187 9 48 316 53 399 3.58e-12 67.4

Find 58 sgRNAs with CRISPR-Local

Find 91 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGAACCATTTCGTTATTC+TGG 0.141446 2.3:-54392841 MS.gene52432:CDS
ATCAATTTAATGTCTGATTT+TGG 0.143567 2.3:-54393303 MS.gene52432:CDS
TTCAATTGATAAGATTAATT+TGG 0.211307 2.3:-54393022 MS.gene52432:CDS
TGGAGGAAGTTAAGAGTTTA+GGG 0.232380 2.3:-54393203 MS.gene52432:CDS
TTGGAGGAAGTTAAGAGTTT+AGG 0.257551 2.3:-54393204 MS.gene52432:CDS
ATTCCTTGGCACTTGCTAAA+AGG 0.292312 2.3:-54392966 MS.gene52432:CDS
AAGAAGGTGAGAACTGAATT+AGG 0.306086 2.3:+54393639 None:intergenic
AAAGGATTTGATTAAGTCAT+TGG 0.323129 2.3:-54393223 MS.gene52432:CDS
AATTGATATTAGACACAATA+AGG 0.329025 2.3:+54393319 None:intergenic
GATCCTTGGACGAATACTTT+TGG 0.330015 2.3:-54393177 MS.gene52432:CDS
TAGACCAACCCCATTTCTTA+AGG 0.338165 2.3:+54393094 None:intergenic
CAGTCAAGGCCATCTACATT+TGG 0.353370 2.3:-54393249 MS.gene52432:CDS
ATTAGACACAATAAGGTGAT+AGG 0.358420 2.3:+54393326 None:intergenic
CAAGTTACACATTCGGTAGA+TGG 0.370763 2.3:+54392700 None:intergenic
AAGTTGATGCCCTTAAGAAA+TGG 0.388575 2.3:-54393104 MS.gene52432:CDS
TAGTATCTGATGAGTGAAAT+CGG 0.388813 2.3:+54393804 None:intergenic
AGAGTTTAGGGTTTGATCCT+TGG 0.397034 2.3:-54393191 MS.gene52432:CDS
AGTTGATGCCCTTAAGAAAT+GGG 0.397811 2.3:-54393103 MS.gene52432:CDS
TTGAACCATTTCGTTATTCT+GGG 0.398296 2.3:-54392840 MS.gene52432:CDS
TCCTTTGAACCAAATGTAGA+TGG 0.407709 2.3:+54393240 None:intergenic
GCCATCTACATTTGGTTCAA+AGG 0.443477 2.3:-54393241 MS.gene52432:CDS
AGACCAACCCCATTTCTTAA+GGG 0.447273 2.3:+54393095 None:intergenic
AACAATTGTTCCAAGGGCAT+TGG 0.458416 2.3:-54392914 MS.gene52432:CDS
TCAATTGGGTGGGAATTCCT+TGG 0.472262 2.3:-54392980 MS.gene52432:CDS
TTTCATCACAACCCCACAAA+AGG 0.473339 2.3:-54393554 MS.gene52432:intron
CTGCAATATCTTGTGATGAA+AGG 0.485086 2.3:-54392889 MS.gene52432:CDS
GCAAACAACGGTATCCTTGT+CGG 0.509274 2.3:+54393383 None:intergenic
ATCTTGTGATGAAAGGTTTG+AGG 0.509536 2.3:-54392882 MS.gene52432:CDS
TGCAGAAAACAATTGTTCCA+AGG 0.522766 2.3:-54392921 MS.gene52432:CDS
TGTTTAACAAGTTACACATT+CGG 0.526635 2.3:+54392693 None:intergenic
CAAGCATTTAGGATGCATCC+TGG 0.527087 2.3:-54393057 MS.gene52432:CDS
ACACATTCGGTAGATGGCAT+TGG 0.528449 2.3:+54392706 None:intergenic
TTGTTTGCTTAATTCGATGT+TGG 0.531300 2.3:-54393368 MS.gene52432:CDS
GCAGAAAACAATTGTTCCAA+GGG 0.535861 2.3:-54392920 MS.gene52432:CDS
CAAAGCTTTCAACAACAAGC+AGG 0.537532 2.3:-54393685 MS.gene52432:CDS
AGTATCTGATGAGTGAAATC+GGG 0.544517 2.3:+54393805 None:intergenic
GAGACCTAAAACTACATTTG+TGG 0.545867 2.3:+54393856 None:intergenic
AAAGCTTTGAGAGCAGATTG+AGG 0.549590 2.3:+54393699 None:intergenic
TATTGCAGAACCAATGCCCT+TGG 0.552410 2.3:+54392904 None:intergenic
TTTGGGTTAATCAATTGGGT+GGG 0.559000 2.3:-54392990 MS.gene52432:CDS
TCGGGAACAACAAGTGTTGA+GGG 0.560234 2.3:+54393823 None:intergenic
ATCGGGAACAACAAGTGTTG+AGG 0.562201 2.3:+54393822 None:intergenic
TTAGACACAATAAGGTGATA+GGG 0.570881 2.3:+54393327 None:intergenic
GGATTTGATTAAGTCATTGG+AGG 0.571043 2.3:-54393220 MS.gene52432:CDS
CTCACCTTCTTAGAAAACCA+TGG 0.576168 2.3:-54393627 MS.gene52432:CDS
TTGCTAGCTCGCTTCAGTCA+AGG 0.593225 2.3:-54393263 MS.gene52432:CDS
ATTCCAAAAGTATTCGTCCA+AGG 0.607263 2.3:+54393174 None:intergenic
GAGAAACAATTTCTTCAACA+TGG 0.614078 2.3:+54393881 None:intergenic
ATGAGGTATGATACAGCGAA+TGG 0.620563 2.3:+54393741 None:intergenic
ATGCCCTTAAGAAATGGGGT+TGG 0.630132 2.3:-54393098 MS.gene52432:CDS
ACCTAAAACTACATTTGTGG+CGG 0.636797 2.3:+54393859 None:intergenic
GTTGATGCCCTTAAGAAATG+GGG 0.641680 2.3:-54393102 MS.gene52432:CDS
ATTGAAGTCAACATGAAACC+AGG 0.642061 2.3:+54393039 None:intergenic
TGAGGTATGATACAGCGAAT+GGG 0.657928 2.3:+54393742 None:intergenic
GCATACACAAAAGAGAACAA+TGG 0.682398 2.3:-54392733 MS.gene52432:CDS
TAGGTTCCTTAAAACCGACA+AGG 0.697683 2.3:-54393397 MS.gene52432:CDS
GGTTGTGATGAAAGTAACCA+AGG 0.698597 2.3:+54393564 None:intergenic
ACATCGAATTAAGCAAACAA+CGG 0.709304 2.3:+54393371 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTAACAATTGAAAAAGA+GGG + chr2.3:54393160-54393179 None:intergenic 15.0%
!! TTCAATTGATAAGATTAATT+TGG - chr2.3:54393553-54393572 MS.gene52432:intron 15.0%
!! AAACTTGAATCAAAAATATG+TGG + chr2.3:54393635-54393654 None:intergenic 20.0%
!! AAAGTTTGAGTAAAAAACTT+TGG - chr2.3:54393441-54393460 MS.gene52432:intron 20.0%
!! AAGTTTGAGTAAAAAACTTT+GGG - chr2.3:54393442-54393461 MS.gene52432:intron 20.0%
!! AATTGATATTAGACACAATA+AGG + chr2.3:54393259-54393278 None:intergenic 20.0%
!! CTATTTAACAATTGAAAAAG+AGG + chr2.3:54393161-54393180 None:intergenic 20.0%
!!! ATCAATTTAATGTCTGATTT+TGG - chr2.3:54393272-54393291 MS.gene52432:CDS 20.0%
!!! CTCTTTTTCAATTGTTAAAT+AGG - chr2.3:54393159-54393178 MS.gene52432:CDS 20.0%
!!! TTTCAATTTTTTCTATCCAA+TGG - chr2.3:54393056-54393075 MS.gene52432:CDS 20.0%
! AAAGGATTTGATTAAGTCAT+TGG - chr2.3:54393352-54393371 MS.gene52432:CDS 25.0%
!! AGAAACCAAAATTTTTGATG+AGG + chr2.3:54392854-54392873 None:intergenic 25.0%
!! TCATACCTCATCAAAAATTT+TGG - chr2.3:54392846-54392865 MS.gene52432:CDS 25.0%
!!! AGTTTTTGGGTTAATCAATT+GGG - chr2.3:54393581-54393600 MS.gene52432:CDS 25.0%
!!! TAATTTGGTGATGAGTTTTT+GGG - chr2.3:54393568-54393587 MS.gene52432:CDS 25.0%
!!! TTAATTTGGTGATGAGTTTT+TGG - chr2.3:54393567-54393586 MS.gene52432:CDS 25.0%
AAGCTACTTCGTAAAATTCT+AGG + chr2.3:54393122-54393141 None:intergenic 30.0%
ACATCGAATTAAGCAAACAA+CGG + chr2.3:54393207-54393226 None:intergenic 30.0%
AGCTACTTCGTAAAATTCTA+GGG + chr2.3:54393121-54393140 None:intergenic 30.0%
ATTAGACACAATAAGGTGAT+AGG + chr2.3:54393252-54393271 None:intergenic 30.0%
TAACGATGAAACAATATCAG+AGG + chr2.3:54393090-54393109 None:intergenic 30.0%
TAGTATCTGATGAGTGAAAT+CGG + chr2.3:54392774-54392793 None:intergenic 30.0%
TCATCATCAAAAAAGAACCT+TGG - chr2.3:54392994-54393013 MS.gene52432:CDS 30.0%
TTAGACACAATAAGGTGATA+GGG + chr2.3:54393251-54393270 None:intergenic 30.0%
TTGAACCATTTCGTTATTCT+GGG - chr2.3:54393735-54393754 MS.gene52432:CDS 30.0%
TTGTTTGCTTAATTCGATGT+TGG - chr2.3:54393207-54393226 MS.gene52432:CDS 30.0%
! AACTGAATTAGGCTTTTCAA+GGG + chr2.3:54392928-54392947 None:intergenic 30.0%
! ACTTTAGCAATAACCTTTTG+TGG + chr2.3:54393037-54393056 None:intergenic 30.0%
! ATTTTCCCAGAATAACGAAA+TGG + chr2.3:54393743-54393762 None:intergenic 30.0%
! CTTTAGCAATAACCTTTTGT+GGG + chr2.3:54393036-54393055 None:intergenic 30.0%
! TAGAATTTTACGAAGTAGCT+TGG - chr2.3:54393121-54393140 MS.gene52432:CDS 30.0%
! TTTAGCAATAACCTTTTGTG+GGG + chr2.3:54393035-54393054 None:intergenic 30.0%
!! AAAACCATGGTTTTCTAAGA+AGG + chr2.3:54392955-54392974 None:intergenic 30.0%
!! CAAGTTTGTTTTCAGCTTTA+AGG - chr2.3:54393772-54393791 MS.gene52432:CDS 30.0%
!!! AAGCTGTTTTTCAAGCATTT+AGG - chr2.3:54393507-54393526 MS.gene52432:intron 30.0%
!!! GAATACTTTTGGAATTGCTT+TGG - chr2.3:54393409-54393428 MS.gene52432:intron 30.0%
!!! GAGTTTTTGGGTTAATCAAT+TGG - chr2.3:54393580-54393599 MS.gene52432:CDS 30.0%
AAGAAGGTGAGAACTGAATT+AGG + chr2.3:54392939-54392958 None:intergenic 35.0%
ACCTAAAACTACATTTGTGG+CGG + chr2.3:54392719-54392738 None:intergenic 35.0%
AGTATCTGATGAGTGAAATC+GGG + chr2.3:54392773-54392792 None:intergenic 35.0%
ATCTTGTGATGAAAGGTTTG+AGG - chr2.3:54393693-54393712 MS.gene52432:CDS 35.0%
ATTGAAGTCAACATGAAACC+AGG + chr2.3:54393539-54393558 None:intergenic 35.0%
CTGCAATATCTTGTGATGAA+AGG - chr2.3:54393686-54393705 MS.gene52432:CDS 35.0%
GAGACCTAAAACTACATTTG+TGG + chr2.3:54392722-54392741 None:intergenic 35.0%
GCAGAAAACAATTGTTCCAA+GGG - chr2.3:54393655-54393674 MS.gene52432:CDS 35.0%
GCATACACAAAAGAGAACAA+TGG - chr2.3:54393842-54393861 MS.gene52432:CDS 35.0%
GGATTTGATTAAGTCATTGG+AGG - chr2.3:54393355-54393374 MS.gene52432:CDS 35.0%
GTTGAACCATTTCGTTATTC+TGG - chr2.3:54393734-54393753 MS.gene52432:CDS 35.0%
TCCTTTGAACCAAATGTAGA+TGG + chr2.3:54393338-54393357 None:intergenic 35.0%
TGCAGAAAACAATTGTTCCA+AGG - chr2.3:54393654-54393673 MS.gene52432:CDS 35.0%
TGGAGGAAGTTAAGAGTTTA+GGG - chr2.3:54393372-54393391 MS.gene52432:CDS 35.0%
TTGGAGGAAGTTAAGAGTTT+AGG - chr2.3:54393371-54393390 MS.gene52432:CDS 35.0%
! AGTTGATGCCCTTAAGAAAT+GGG - chr2.3:54393472-54393491 MS.gene52432:intron 35.0%
! GAACTGAATTAGGCTTTTCA+AGG + chr2.3:54392929-54392948 None:intergenic 35.0%
! TTTGGGTTAATCAATTGGGT+GGG - chr2.3:54393585-54393604 MS.gene52432:CDS 35.0%
!! AAGTTGATGCCCTTAAGAAA+TGG - chr2.3:54393471-54393490 MS.gene52432:intron 35.0%
!! ATTCCAAAAGTATTCGTCCA+AGG + chr2.3:54393404-54393423 None:intergenic 35.0%
!!! GTTTGTTTTCAGCTTTAAGG+AGG - chr2.3:54393775-54393794 MS.gene52432:CDS 35.0%
!!! TTTTGGGTTAATCAATTGGG+TGG - chr2.3:54393584-54393603 MS.gene52432:CDS 35.0%
AGACCAACCCCATTTCTTAA+GGG + chr2.3:54393483-54393502 None:intergenic 40.0%
ATGAGGTATGATACAGCGAA+TGG + chr2.3:54392837-54392856 None:intergenic 40.0%
CAAAGCTTTCAACAACAAGC+AGG - chr2.3:54392890-54392909 MS.gene52432:CDS 40.0%
CAAGTTACACATTCGGTAGA+TGG + chr2.3:54393878-54393897 None:intergenic 40.0%
CTCACCTTCTTAGAAAACCA+TGG - chr2.3:54392948-54392967 MS.gene52432:CDS 40.0%
GGTTGTGATGAAAGTAACCA+AGG + chr2.3:54393014-54393033 None:intergenic 40.0%
GTTGATGCCCTTAAGAAATG+GGG - chr2.3:54393473-54393492 MS.gene52432:intron 40.0%
TAGACCAACCCCATTTCTTA+AGG + chr2.3:54393484-54393503 None:intergenic 40.0%
TAGGTTCCTTAAAACCGACA+AGG - chr2.3:54393178-54393197 MS.gene52432:CDS 40.0%
TGAGGTATGATACAGCGAAT+GGG + chr2.3:54392836-54392855 None:intergenic 40.0%
TGTTGTCGTGTGAAAAACCA+TGG + chr2.3:54392968-54392987 None:intergenic 40.0%
TTTCATCACAACCCCACAAA+AGG - chr2.3:54393021-54393040 MS.gene52432:CDS 40.0%
! AACAATTGTTCCAAGGGCAT+TGG - chr2.3:54393661-54393680 MS.gene52432:CDS 40.0%
! AGAGTTTAGGGTTTGATCCT+TGG - chr2.3:54393384-54393403 MS.gene52432:CDS 40.0%
! ATTCCTTGGCACTTGCTAAA+AGG - chr2.3:54393609-54393628 MS.gene52432:CDS 40.0%
! GATCCTTGGACGAATACTTT+TGG - chr2.3:54393398-54393417 MS.gene52432:intron 40.0%
! GCCATCTACATTTGGTTCAA+AGG - chr2.3:54393334-54393353 MS.gene52432:CDS 40.0%
! TCCGCCACAAATGTAGTTTT+AGG - chr2.3:54392715-54392734 MS.gene52432:CDS 40.0%
!! AAAGCTTTGAGAGCAGATTG+AGG + chr2.3:54392879-54392898 None:intergenic 40.0%
ACACATTCGGTAGATGGCAT+TGG + chr2.3:54393872-54393891 None:intergenic 45.0%
ATGCCCTTAAGAAATGGGGT+TGG - chr2.3:54393477-54393496 MS.gene52432:intron 45.0%
CAGTCAAGGCCATCTACATT+TGG - chr2.3:54393326-54393345 MS.gene52432:CDS 45.0%
GCAAACAACGGTATCCTTGT+CGG + chr2.3:54393195-54393214 None:intergenic 45.0%
TATTGCAGAACCAATGCCCT+TGG + chr2.3:54393674-54393693 None:intergenic 45.0%
TCAATTGGGTGGGAATTCCT+TGG - chr2.3:54393595-54393614 MS.gene52432:CDS 45.0%
! ATCGGGAACAACAAGTGTTG+AGG + chr2.3:54392756-54392775 None:intergenic 45.0%
! CAAGCATTTAGGATGCATCC+TGG - chr2.3:54393518-54393537 MS.gene52432:intron 45.0%
!! ATCAGAGGAAGAAGCACCAT+TGG + chr2.3:54393075-54393094 None:intergenic 45.0%
!! TCGGGAACAACAAGTGTTGA+GGG + chr2.3:54392755-54392774 None:intergenic 45.0%
!!! CGGTATCCTTGTCGGTTTTA+AGG + chr2.3:54393187-54393206 None:intergenic 45.0%
TTGCTAGCTCGCTTCAGTCA+AGG - chr2.3:54393312-54393331 MS.gene52432:CDS 50.0%
! TGGCCTTTTAGCAAGTGCCA+AGG + chr2.3:54393615-54393634 None:intergenic 50.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 54392696 54393901 54392696 ID=MS.gene52432
chr2.3 mRNA 54392696 54393901 54392696 ID=MS.gene52432.t1;Parent=MS.gene52432
chr2.3 exon 54393555 54393901 54393555 ID=MS.gene52432.t1.exon1;Parent=MS.gene52432.t1
chr2.3 CDS 54393555 54393901 54393555 ID=cds.MS.gene52432.t1;Parent=MS.gene52432.t1
chr2.3 exon 54392696 54393416 54392696 ID=MS.gene52432.t1.exon2;Parent=MS.gene52432.t1
chr2.3 CDS 54392696 54393416 54392696 ID=cds.MS.gene52432.t1;Parent=MS.gene52432.t1
Gene Sequence

>MS.gene52432

ATGTTGAAGAAATTGTTTCTCCGCCACAAATGTAGTTTTAGGTCTCATCACAACAACCCTCAACACTTGTTGTTCCCGATTTCACTCATCAGATACTACAACACTACAATAACAACAACATCTGAATCAAACACACACCCATTCGCTGTATCATACCTCATCAAAAATTTTGGTTTCTCACCTCAATCTGCTCTCAAAGCTTTCAACAACAAGCAGGTTCGTTTCAATACCCTTGAAAAGCCTAATTCAGTTCTCACCTTCTTAGAAAACCATGGTTTTTCACACGACAACATACGCGTCATCATCAAAAAAGAACCTTGGTTACTTTCATCACAACCCCACAAAAGGTTATTGCTAAAGTTTCAATTTTTTCTATCCAATGGTGCTTCTTCCTCTGATATTGTTTCATCGTTAACTTCAAACCCTAGAATTTTACGAAGTAGCTTGGAGAAACAAATAATCCCTCTTTTTCAATTGTTAAATAGGTTCCTTAAAACCGACAAGGATACCGTTGTTTGCTTAATTCGATGTTGGACTGCACTTGCTATTAATCCCTATCACCTTATTGTGTCTAATATCAATTTAATGTCTGATTTTGGAGTTTCTGATTCTGTCATTGCTAGCTCGCTTCAGTCAAGGCCATCTACATTTGGTTCAAAGGATTTGATTAAGTCATTGGAGGAAGTTAAGAGTTTAGGGTTTGATCCTTGGACGAATACTTTTGGAATTGCTTTGGCAGCTAAGAAAAGTTTGAGTAAAAAACTTTGGGATGAGAAAGTTGATGCCCTTAAGAAATGGGGTTGGTCTAATGAAGCTGTTTTTCAAGCATTTAGGATGCATCCTGGTTTCATGTTGACTTCAATTGATAAGATTAATTTGGTGATGAGTTTTTGGGTTAATCAATTGGGTGGGAATTCCTTGGCACTTGCTAAAAGGCCACATATTTTTGATTCAAGTTTGCAGAAAACAATTGTTCCAAGGGCATTGGTTCTGCAATATCTTGTGATGAAAGGTTTGAGGAAAAAGAATGCAAGCTTAGTTGAACCATTTCGTTATTCTGGGAAAATGTTCTTGAGCAAGTTTGTTTTCAGCTTTAAGGAGGAGTCTGATTATCTATTAAAGTTATATGACGAAAAAATGAAACTTGCATACACAAAAGAGAACAATGGCATGCCAATGCCATCTACCGAATGTGTAACTTGTTAA
Protein sequence

>MS.gene52432.t1

MLKKLFLRHKCSFRSHHNNPQHLLFPISLIRYYNTTITTTSESNTHPFAVSYLIKNFGFSPQSALKAFNNKQVRFNTLEKPNSVLTFLENHGFSHDNIRVIIKKEPWLLSSQPHKRFLKTDKDTVVCLIRCWTALAINPYHLIVSNINLMSDFGVSDSVIASSLQSRPSTFGSKDLIKSLEEVKSLGFDPWTNTFGIALAAKKSLSKKLWDEKVDALKKWGWSNEAVFQAFRMHPGFMLTSIDKINLVMSFWVNQLGGNSLALAKRPHIFDSSLQKTIVPRALVLQYLVMKGLRKKNASLVEPFRYSGKMFLSKFVFSFKEESDYLLKLYDEKMKLAYTKENNGMPMPSTECVTC