AlfalfaGEDB | MS.gene52432

M. sativa cultivar XinJiangDaYe / MS.gene52432

KEGG: K15032
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02536.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52432.t1	XP_024633294.1	67.1	392	76	3	15	355	23	412	1.90E-138	502.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52432.t1	A0A072VGL0	67.1	392	76	3	15	355	23	412	1.3e-138	502.3

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene52432.t1	TR	mTERF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene00326	MS.gene52432	PPI
MS.gene004543	MS.gene52432	PPI
MS.gene004585	MS.gene52432	PPI
MS.gene004590	MS.gene52432	PPI
MS.gene035324	MS.gene52432	PPI
MS.gene036497	MS.gene52432	PPI
MS.gene073371	MS.gene52432	PPI
MS.gene073373	MS.gene52432	PPI
MS.gene073434	MS.gene52432	PPI
MS.gene52395	MS.gene52432	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52432.t1	MTR_2g437170	67.092	392	76	3	15	355	23	412	0.0	513
MS.gene52432.t1	MTR_2g437150	63.446	383	87	3	15	346	23	403	2.90e-166	470
MS.gene52432.t1	MTR_2g437160	60.050	403	104	4	1	349	12	411	5.65e-159	452
MS.gene52432.t1	MTR_2g437960	60.488	410	103	5	1	355	1	406	9.61e-157	446
MS.gene52432.t1	MTR_2g437960	60.442	407	102	5	1	352	1	403	3.63e-154	440
MS.gene52432.t1	MTR_2g437940	61.257	382	109	5	1	353	1	372	3.93e-151	431
MS.gene52432.t1	MTR_2g437100	59.126	389	103	4	1	333	7	395	3.29e-148	424
MS.gene52432.t1	MTR_2g437180	57.568	403	104	6	1	346	1	393	1.47e-146	420
MS.gene52432.t1	MTR_2g437120	57.711	402	106	5	1	345	1	395	6.55e-145	416
MS.gene52432.t1	MTR_2g438010	57.937	378	109	3	22	353	48	421	1.68e-144	416

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52432.t1	AT5G07900	28.954	373	201	9	16	330	33	399	8.95e-38	140
MS.gene52432.t1	AT1G21150	26.667	330	191	5	48	328	57	384	2.08e-28	114
MS.gene52432.t1	AT1G21150	26.347	334	195	5	44	328	17	348	2.12e-28	113
MS.gene52432.t1	AT1G21150	26.667	330	191	5	48	328	121	448	4.98e-28	114
MS.gene52432.t1	AT5G64950	26.124	356	204	9	30	330	24	375	2.51e-20	91.7
MS.gene52432.t1	AT1G61970	22.571	350	187	9	48	316	53	399	3.58e-12	67.4
MS.gene52432.t1	AT1G61970	22.571	350	187	9	48	316	53	399	3.58e-12	67.4
MS.gene52432.t1	AT1G61970	22.571	350	187	9	48	316	53	399	3.58e-12	67.4
MS.gene52432.t1	AT1G61970	22.571	350	187	9	48	316	53	399	3.58e-12	67.4
MS.gene52432.t1	AT1G61970	22.571	350	187	9	48	316	53	399	3.58e-12	67.4

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Find 58 sgRNAs with CRISPR-Local

Find 91 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCTTTGAGAGCAGATTG+AGG	0.549590	2.3:+54393699	None:intergenic
AAAGGATTTGATTAAGTCAT+TGG	0.323129	2.3:-54393223	MS.gene52432:CDS
AACAATTGTTCCAAGGGCAT+TGG	0.458416	2.3:-54392914	MS.gene52432:CDS
AAGAAGGTGAGAACTGAATT+AGG	0.306086	2.3:+54393639	None:intergenic
AAGTTGATGCCCTTAAGAAA+TGG	0.388575	2.3:-54393104	MS.gene52432:CDS
AATTGATATTAGACACAATA+AGG	0.329025	2.3:+54393319	None:intergenic
ACACATTCGGTAGATGGCAT+TGG	0.528449	2.3:+54392706	None:intergenic
ACATCGAATTAAGCAAACAA+CGG	0.709304	2.3:+54393371	None:intergenic
ACCTAAAACTACATTTGTGG+CGG	0.636797	2.3:+54393859	None:intergenic
AGACCAACCCCATTTCTTAA+GGG	0.447273	2.3:+54393095	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGCTACTTCGTAAAATTCT+AGG	+	chr2.3:54393122-54393141	None:intergenic	30.0%
ACATCGAATTAAGCAAACAA+CGG	+	chr2.3:54393207-54393226	None:intergenic	30.0%
AGCTACTTCGTAAAATTCTA+GGG	+	chr2.3:54393121-54393140	None:intergenic	30.0%
ATTAGACACAATAAGGTGAT+AGG	+	chr2.3:54393252-54393271	None:intergenic	30.0%
TAACGATGAAACAATATCAG+AGG	+	chr2.3:54393090-54393109	None:intergenic	30.0%
TAGTATCTGATGAGTGAAAT+CGG	+	chr2.3:54392774-54392793	None:intergenic	30.0%
TCATCATCAAAAAAGAACCT+TGG	-	chr2.3:54392994-54393013	MS.gene52432:CDS	30.0%
TTAGACACAATAAGGTGATA+GGG	+	chr2.3:54393251-54393270	None:intergenic	30.0%
TTGAACCATTTCGTTATTCT+GGG	-	chr2.3:54393735-54393754	MS.gene52432:CDS	30.0%
TTGTTTGCTTAATTCGATGT+TGG	-	chr2.3:54393207-54393226	MS.gene52432:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.3	gene	54392696	54393901	54392696	ID=MS.gene52432
chr2.3	mRNA	54392696	54393901	54392696	ID=MS.gene52432.t1;Parent=MS.gene52432
chr2.3	exon	54393555	54393901	54393555	ID=MS.gene52432.t1.exon1;Parent=MS.gene52432.t1
chr2.3	CDS	54393555	54393901	54393555	ID=cds.MS.gene52432.t1;Parent=MS.gene52432.t1
chr2.3	exon	54392696	54393416	54392696	ID=MS.gene52432.t1.exon2;Parent=MS.gene52432.t1
chr2.3	CDS	54392696	54393416	54392696	ID=cds.MS.gene52432.t1;Parent=MS.gene52432.t1

Gene Sequence

>MS.gene52432

ATGTTGAAGAAATTGTTTCTCCGCCACAAATGTAGTTTTAGGTCTCATCACAACAACCCTCAACACTTGTTGTTCCCGATTTCACTCATCAGATACTACAACACTACAATAACAACAACATCTGAATCAAACACACACCCATTCGCTGTATCATACCTCATCAAAAATTTTGGTTTCTCACCTCAATCTGCTCTCAAAGCTTTCAACAACAAGCAGGTTCGTTTCAATACCCTTGAAAAGCCTAATTCAGTTCTCACCTTCTTAGAAAACCATGGTTTTTCACACGACAACATACGCGTCATCATCAAAAAAGAACCTTGGTTACTTTCATCACAACCCCACAAAAGGTTATTGCTAAAGTTTCAATTTTTTCTATCCAATGGTGCTTCTTCCTCTGATATTGTTTCATCGTTAACTTCAAACCCTAGAATTTTACGAAGTAGCTTGGAGAAACAAATAATCCCTCTTTTTCAATTGTTAAATAGGTTCCTTAAAACCGACAAGGATACCGTTGTTTGCTTAATTCGATGTTGGACTGCACTTGCTATTAATCCCTATCACCTTATTGTGTCTAATATCAATTTAATGTCTGATTTTGGAGTTTCTGATTCTGTCATTGCTAGCTCGCTTCAGTCAAGGCCATCTACATTTGGTTCAAAGGATTTGATTAAGTCATTGGAGGAAGTTAAGAGTTTAGGGTTTGATCCTTGGACGAATACTTTTGGAATTGCTTTGGCAGCTAAGAAAAGTTTGAGTAAAAAACTTTGGGATGAGAAAGTTGATGCCCTTAAGAAATGGGGTTGGTCTAATGAAGCTGTTTTTCAAGCATTTAGGATGCATCCTGGTTTCATGTTGACTTCAATTGATAAGATTAATTTGGTGATGAGTTTTTGGGTTAATCAATTGGGTGGGAATTCCTTGGCACTTGCTAAAAGGCCACATATTTTTGATTCAAGTTTGCAGAAAACAATTGTTCCAAGGGCATTGGTTCTGCAATATCTTGTGATGAAAGGTTTGAGGAAAAAGAATGCAAGCTTAGTTGAACCATTTCGTTATTCTGGGAAAATGTTCTTGAGCAAGTTTGTTTTCAGCTTTAAGGAGGAGTCTGATTATCTATTAAAGTTATATGACGAAAAAATGAAACTTGCATACACAAAAGAGAACAATGGCATGCCAATGCCATCTACCGAATGTGTAACTTGTTAA

Protein sequence

>MS.gene52432.t1

MLKKLFLRHKCSFRSHHNNPQHLLFPISLIRYYNTTITTTSESNTHPFAVSYLIKNFGFSPQSALKAFNNKQVRFNTLEKPNSVLTFLENHGFSHDNIRVIIKKEPWLLSSQPHKRFLKTDKDTVVCLIRCWTALAINPYHLIVSNINLMSDFGVSDSVIASSLQSRPSTFGSKDLIKSLEEVKSLGFDPWTNTFGIALAAKKSLSKKLWDEKVDALKKWGWSNEAVFQAFRMHPGFMLTSIDKINLVMSFWVNQLGGNSLALAKRPHIFDSSLQKTIVPRALVLQYLVMKGLRKKNASLVEPFRYSGKMFLSKFVFSFKEESDYLLKLYDEKMKLAYTKENNGMPMPSTECVTC