AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene52427

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52427.t1 MTR_2g437040 93.473 383 25 0 1 383 1 383 0.0 721
MS.gene52427.t1 MTR_2g436440 65.464 388 128 2 1 382 1 388 0.0 510
MS.gene52427.t1 MTR_2g437060 66.667 390 118 2 3 380 6 395 0.0 509
MS.gene52427.t1 MTR_2g437080 63.613 382 139 0 1 382 1 382 4.49e-177 498
MS.gene52427.t1 MTR_2g437020 64.516 372 126 3 14 380 10 380 1.91e-169 478
MS.gene52427.t1 MTR_2g437030 62.660 391 136 2 1 382 79 468 3.15e-168 479
MS.gene52427.t1 MTR_2g436400 61.828 372 140 1 5 374 10 381 6.96e-164 464
MS.gene52427.t1 MTR_4g119550 50.877 342 165 2 39 379 50 389 6.02e-124 363
MS.gene52427.t1 MTR_2g437260 48.883 358 177 3 24 377 18 373 7.35e-121 355
MS.gene52427.t1 MTR_2g437200 50.000 376 148 4 33 370 25 398 1.68e-120 355
MS.gene52427.t1 MTR_2g437240 48.837 387 158 3 35 383 27 411 5.93e-119 351
MS.gene52427.t1 MTR_2g437130 49.861 361 177 2 22 382 27 383 6.22e-119 350
MS.gene52427.t1 MTR_2g437990 47.938 388 195 3 2 382 7 394 1.76e-118 350
MS.gene52427.t1 MTR_2g437120 50.565 354 171 2 32 382 43 395 9.89e-118 348
MS.gene52427.t1 MTR_2g438010 47.044 389 198 3 2 382 27 415 1.16e-116 346
MS.gene52427.t1 MTR_2g437960 50.872 344 166 1 42 382 55 398 2.68e-116 344
MS.gene52427.t1 MTR_2g437960 50.872 344 166 1 42 382 55 398 4.55e-116 344
MS.gene52427.t1 MTR_2g437170 50.278 360 170 3 32 382 43 402 1.47e-115 342
MS.gene52427.t1 MTR_2g076320 46.787 389 199 3 2 382 7 395 4.06e-114 338
MS.gene52427.t1 MTR_2g436460 47.769 381 176 6 13 373 2 379 1.09e-113 337
MS.gene52427.t1 MTR_2g437150 48.774 367 178 4 26 382 36 402 1.74e-112 334
MS.gene52427.t1 MTR_2g437160 48.209 363 186 1 22 382 45 407 1.91e-112 335
MS.gene52427.t1 MTR_2g437180 49.709 344 168 2 42 382 51 392 5.72e-111 330
MS.gene52427.t1 MTR_2g437100 51.198 334 158 2 42 370 62 395 3.42e-108 323
MS.gene52427.t1 MTR_2g438020 45.503 378 164 4 39 377 70 444 3.76e-105 319
MS.gene52427.t1 MTR_4g120380 46.257 374 191 6 1 368 1 370 6.80e-104 311
MS.gene52427.t1 MTR_4g119580 45.882 340 180 2 31 368 33 370 7.38e-103 309
MS.gene52427.t1 MTR_2g437940 48.094 341 152 2 42 382 51 366 1.38e-99 300
MS.gene52427.t1 MTR_4g120380 46.328 354 180 6 1 348 1 350 2.20e-96 294
MS.gene52427.t1 MTR_2g019810 45.970 335 169 7 41 370 32 359 4.12e-95 288
MS.gene52427.t1 MTR_2g019840 42.520 381 201 7 4 374 3 375 1.35e-93 285
MS.gene52427.t1 MTR_2g436370 62.121 198 63 3 1 189 1 195 6.56e-73 226
MS.gene52427.t1 MTR_2g437090 61.446 166 64 0 215 380 3 168 7.06e-72 222
MS.gene52427.t1 MTR_2g437160 49.754 203 99 1 183 382 114 316 5.05e-63 204
MS.gene52427.t1 MTR_3g450500 32.759 348 225 4 28 368 25 370 1.14e-58 195
MS.gene52427.t1 MTR_4g119570 37.751 249 122 1 120 368 14 229 1.05e-52 175
MS.gene52427.t1 MTR_4g007490 31.700 347 228 5 28 368 25 368 9.39e-49 169
MS.gene52427.t1 MTR_8g080990 31.525 295 199 2 73 364 74 368 4.53e-40 146
MS.gene52427.t1 MTR_8g081000 26.032 315 229 3 71 381 85 399 2.12e-30 120
MS.gene52427.t1 MTR_8g081000 26.246 301 219 2 71 368 85 385 3.53e-30 119
MS.gene52427.t1 MTR_8g081000 26.246 301 219 2 71 368 85 385 5.66e-30 119
MS.gene52427.t1 MTR_4g049400 47.321 112 55 1 32 139 38 149 7.96e-24 99.0
MS.gene52427.t1 MTR_2g436380 43.119 109 55 3 217 325 5 106 2.58e-20 90.5
MS.gene52427.t1 MTR_3g085240 36.943 157 86 4 10 163 25 171 4.52e-19 86.3
MS.gene52427.t1 MTR_3g085240 50.847 59 29 0 272 330 176 234 1.30e-13 70.5
MS.gene52427.t1 MTR_8g012210 22.414 290 214 7 86 368 63 348 6.08e-13 69.7
MS.gene52427.t1 MTR_4g119615 56.000 50 22 0 312 361 26 75 1.20e-12 63.9
MS.gene52427.t1 MTR_3g092710 23.684 266 181 6 95 348 236 491 1.58e-12 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52427.t1 AT5G07900 33.634 333 213 4 41 367 69 399 3.08e-60 200
MS.gene52427.t1 AT1G21150 31.627 332 217 6 41 365 56 384 2.27e-46 163
MS.gene52427.t1 AT1G21150 31.045 335 221 6 38 365 17 348 3.68e-46 162
MS.gene52427.t1 AT1G21150 31.627 332 217 6 41 365 120 448 9.37e-46 163
MS.gene52427.t1 AT1G61980 30.081 369 211 8 41 367 52 415 1.84e-43 156
MS.gene52427.t1 AT1G61980 30.081 369 211 8 41 367 52 415 1.84e-43 156
MS.gene52427.t1 AT1G61980 30.081 369 211 8 41 367 52 415 1.84e-43 156
MS.gene52427.t1 AT1G62085 29.024 410 206 10 27 353 32 439 1.84e-39 146
MS.gene52427.t1 AT1G62085 29.024 410 206 10 27 353 32 439 1.84e-39 146
MS.gene52427.t1 AT3G46950 27.901 405 213 9 22 353 32 430 7.26e-39 144
MS.gene52427.t1 AT1G62120 29.219 397 227 9 5 355 19 407 3.61e-38 142
MS.gene52427.t1 AT1G61990 27.981 411 239 7 5 367 7 408 5.10e-38 141
MS.gene52427.t1 AT1G61990 27.981 411 239 7 5 367 7 408 5.10e-38 141
MS.gene52427.t1 AT1G61970 28.571 406 220 10 5 353 7 399 4.23e-37 139
MS.gene52427.t1 AT1G61970 28.571 406 220 10 5 353 7 399 4.23e-37 139
MS.gene52427.t1 AT1G61970 28.571 406 220 10 5 353 7 399 4.23e-37 139
MS.gene52427.t1 AT1G61970 28.571 406 220 10 5 353 7 399 4.23e-37 139
MS.gene52427.t1 AT1G61970 28.571 406 220 10 5 353 7 399 4.23e-37 139
MS.gene52427.t1 AT1G61970 28.571 406 220 10 5 353 7 399 4.23e-37 139
MS.gene52427.t1 AT1G61970 28.571 406 220 10 5 353 7 399 4.23e-37 139
MS.gene52427.t1 AT5G64950 30.682 352 212 10 30 359 25 366 1.14e-33 129
MS.gene52427.t1 AT1G61960 26.044 407 212 8 42 367 53 451 4.21e-33 129
MS.gene52427.t1 AT1G62110 26.633 398 213 7 33 353 44 439 2.13e-32 127
MS.gene52427.t1 AT1G62150 25.750 400 219 9 35 359 52 448 5.60e-31 123
MS.gene52427.t1 AT5G23930 27.506 389 204 7 41 358 55 436 1.63e-29 119
MS.gene52427.t1 AT1G62010 26.912 353 183 7 54 355 57 385 1.29e-28 115
MS.gene52427.t1 AT1G56380 25.135 370 213 11 42 359 28 385 4.78e-23 100
MS.gene52427.t1 AT1G56380 25.410 366 209 11 42 355 17 370 5.38e-23 99.8
MS.gene52427.t1 AT1G79220 24.026 308 191 9 79 380 119 389 1.92e-13 71.6

Find 75 sgRNAs with CRISPR-Local

Find 105 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATACCTCATTCACAATTT+TGG 0.106320 2.3:-54436558 MS.gene52427:CDS
GTGAAGGAGTTAAAGGATTT+AGG 0.142526 2.3:-54436042 MS.gene52427:CDS
AATTGCAATCCAACTTTATT+TGG 0.152258 2.3:-54436186 MS.gene52427:CDS
TTGCAATGACAGCGCGTATT+TGG 0.169327 2.3:+54436421 None:intergenic
TGCTAAAACACCAAGGGTTT+TGG 0.198044 2.3:-54435791 MS.gene52427:CDS
TAAACTCAGTGATGAGCTTT+TGG 0.230631 2.3:-54435846 MS.gene52427:CDS
TTTCTTCATAAAGCTTTAAT+AGG 0.257224 2.3:+54435605 None:intergenic
GAAGAGAGGTTTGCATAAAA+AGG 0.278062 2.3:-54435713 MS.gene52427:CDS
TATGTTCCTTACTGCAAGTT+TGG 0.287367 2.3:-54436283 MS.gene52427:CDS
TGAAGGAGTTAAAGGATTTA+GGG 0.287415 2.3:-54436041 MS.gene52427:CDS
AGACCAGCCCCATTTCTTAA+AGG 0.311413 2.3:+54435933 None:intergenic
AAACTTTGGCAACACCCTTT+TGG 0.315392 2.3:+54436368 None:intergenic
AAATATTGCAAGATTGCTTC+GGG 0.322556 2.3:-54436106 MS.gene52427:CDS
GGTTTCGGATAAATATGTTT+TGG 0.343580 2.3:+54435978 None:intergenic
TGAGTTGGTGAAGGAGTTAA+AGG 0.346015 2.3:-54436049 MS.gene52427:CDS
AGTTGATACCTTTAAGAAAT+GGG 0.353795 2.3:-54435941 MS.gene52427:CDS
AAGTTGATACCTTTAAGAAA+TGG 0.365182 2.3:-54435942 MS.gene52427:CDS
TTGGGTCAATCAGTTGGGTT+GGG 0.365374 2.3:-54435827 MS.gene52427:CDS
TGCAATGACAGCGCGTATTT+GGG 0.367219 2.3:+54436422 None:intergenic
AATAGTCCCAACCTATGAAT+TGG 0.380595 2.3:-54436253 MS.gene52427:CDS
CTACTTCTTCCAAATAAAGT+TGG 0.386610 2.3:+54436177 None:intergenic
CATGTATATAAATCGGTTTA+AGG 0.388072 2.3:-54435641 MS.gene52427:CDS
GTCAGAGTTAGAAGCACCTT+TGG 0.395726 2.3:+54436332 None:intergenic
TAAATATTGCAAGATTGCTT+CGG 0.406570 2.3:-54436107 MS.gene52427:CDS
GTATTTATAAACCAATTCAT+AGG 0.407861 2.3:+54436242 None:intergenic
AAGAAGTTGAGAACTGAATC+AGG 0.411972 2.3:+54436468 None:intergenic
TATAAACCAATTCATAGGTT+GGG 0.416412 2.3:+54436247 None:intergenic
GTCTCATCAGTGACTATAAA+CGG 0.428293 2.3:+54435673 None:intergenic
TTTGGGTCAATCAGTTGGGT+TGG 0.429067 2.3:-54435828 MS.gene52427:CDS
TCTATGACATGTATATAAAT+CGG 0.442482 2.3:-54435648 MS.gene52427:CDS
TTTCCTGCGATCCCTCCAAA+AGG 0.445420 2.3:-54436383 MS.gene52427:CDS
TCTTGTCCAAACTTGCAGTA+AGG 0.462468 2.3:+54436277 None:intergenic
GTGGAGAAATAGTGAGAAAA+GGG 0.466735 2.3:+54436612 None:intergenic
GGTGGAGAAATAGTGAGAAA+AGG 0.473547 2.3:+54436611 None:intergenic
TGGGTTTGGTGAGAAAGTTA+AGG 0.482786 2.3:+54436647 None:intergenic
TTTAACTCCTTCACCAACTC+AGG 0.483502 2.3:+54436051 None:intergenic
AAATAGTGAGAAAAGGGTAA+TGG 0.487797 2.3:+54436618 None:intergenic
TTATAAACCAATTCATAGGT+TGG 0.490431 2.3:+54436246 None:intergenic
TAAGGTCTTGAGATAGAGAA+GGG 0.500312 2.3:+54436665 None:intergenic
AGAGGTTGAATCTGAATTGT+TGG 0.506057 2.3:+54436590 None:intergenic
TCAGTTGGGTTGGGATGCTA+TGG 0.506950 2.3:-54435818 MS.gene52427:CDS
TATGATCCTTCGCTCCAGAC+TGG 0.512261 2.3:+54435765 None:intergenic
CTCAACTTCTTTAGAAACCA+TGG 0.514218 2.3:-54436456 MS.gene52427:CDS
AGAATCCAAAATTGTGAATG+AGG 0.517196 2.3:+54436553 None:intergenic
TTAAGGTCTTGAGATAGAGA+AGG 0.519722 2.3:+54436664 None:intergenic
AAACTTGCAGTAAGGAACAT+AGG 0.519839 2.3:+54436285 None:intergenic
CTTGAAATGAACATTGTAAG+TGG 0.523656 2.3:+54436503 None:intergenic
GAGGTATGACACTGCAAAAG+AGG 0.530330 2.3:+54436572 None:intergenic
TATTCCACAACTGAGGCTCT+TGG 0.536781 2.3:+54435742 None:intergenic
AACTTGCAGTAAGGAACATA+GGG 0.539419 2.3:+54436286 None:intergenic
TTCCTGCGATCCCTCCAAAA+GGG 0.542143 2.3:-54436382 MS.gene52427:CDS
ATACCTTTAAGAAATGGGGC+TGG 0.564816 2.3:-54435936 MS.gene52427:CDS
GGTTGAATCTGAATTGTTGG+TGG 0.572434 2.3:+54436593 None:intergenic
GTTGATACCTTTAAGAAATG+GGG 0.574983 2.3:-54435940 MS.gene52427:CDS
GTGGAATATCTTCTGAAGAG+AGG 0.579571 2.3:-54435727 MS.gene52427:CDS
CATATTTATCCGAAACCCGA+TGG 0.584129 2.3:-54435972 MS.gene52427:CDS
ATCAAATTGTTGATTCAGAG+TGG 0.585441 2.3:-54436141 MS.gene52427:CDS
CAACTTGCCTGAGTTGGTGA+AGG 0.601746 2.3:-54436058 MS.gene52427:CDS
TTTGGGAATCAGAGAAACCA+TGG 0.602265 2.3:+54436439 None:intergenic
ATTGAATCTTGCACAAACCA+AGG 0.602352 2.3:-54435581 MS.gene52427:CDS
GGCCATTGCTAAAACACCAA+GGG 0.609965 2.3:-54435797 MS.gene52427:CDS
TGAGATAGAGAAGGGTTGAA+CGG 0.624735 2.3:+54436673 None:intergenic
GACAGGCAACTTGCCTGAGT+TGG 0.629550 2.3:-54436064 MS.gene52427:CDS
CATACCAAGAGCCTCAGTTG+TGG 0.635286 2.3:-54435746 MS.gene52427:CDS
ACATAGGGTTCTTAGTGACA+AGG 0.636619 2.3:+54436301 None:intergenic
ACTGAGAAAATTGATTGTGA+AGG 0.638960 2.3:+54436012 None:intergenic
AATACGCGCTGTCATTGCAA+AGG 0.640391 2.3:-54436418 MS.gene52427:CDS
GGATCGCAGGAAAGCAAGCG+TGG 0.641477 2.3:+54436393 None:intergenic
TTTATTTGGAAGAAGTAGCG+TGG 0.642616 2.3:-54436172 MS.gene52427:CDS
GAAATGAACATTGTAAGTGG+AGG 0.651609 2.3:+54436506 None:intergenic
GTATATAAATCGGTTTAAGG+AGG 0.668406 2.3:-54435638 MS.gene52427:CDS
CAGAAGATATTCCACAACTG+AGG 0.677963 2.3:+54435735 None:intergenic
TGGCCATTGCTAAAACACCA+AGG 0.690744 2.3:-54435798 MS.gene52427:CDS
AATATTGCAAGATTGCTTCG+GGG 0.721927 2.3:-54436105 MS.gene52427:CDS
ATGGATGTTAACATACACTG+AGG 0.775832 2.3:+54435877 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTATTTATAAACCAATTCAT+AGG + chr2.3:54436012-54436031 None:intergenic 20.0%
!! TCTATGACATGTATATAAAT+CGG - chr2.3:54436603-54436622 MS.gene52427:CDS 20.0%
!!! AATATTAAGTTTTTCATGAC+AGG - chr2.3:54436170-54436189 MS.gene52427:CDS 20.0%
!!! TTTCTTCATAAAGCTTTAAT+AGG + chr2.3:54436649-54436668 None:intergenic 20.0%
! AATTGCAATCCAACTTTATT+TGG - chr2.3:54436065-54436084 MS.gene52427:CDS 25.0%
! GAGAGTAAAAATTGAAACTT+TGG + chr2.3:54435900-54435919 None:intergenic 25.0%
! TAAATATTGCAAGATTGCTT+CGG - chr2.3:54436144-54436163 MS.gene52427:CDS 25.0%
! TATAAACCAATTCATAGGTT+GGG + chr2.3:54436007-54436026 None:intergenic 25.0%
! TTATAAACCAATTCATAGGT+TGG + chr2.3:54436008-54436027 None:intergenic 25.0%
!! AGTTGATACCTTTAAGAAAT+GGG - chr2.3:54436310-54436329 MS.gene52427:CDS 25.0%
!! CATGTATATAAATCGGTTTA+AGG - chr2.3:54436610-54436629 MS.gene52427:CDS 25.0%
!! TTTCAATTTTTACTCTCCAA+AGG - chr2.3:54435903-54435922 MS.gene52427:CDS 25.0%
!!! AAAGTTTTGAAGCAAATTGT+GGG + chr2.3:54435725-54435744 None:intergenic 25.0%
!!! AAGTTGATACCTTTAAGAAA+TGG - chr2.3:54436309-54436328 MS.gene52427:CDS 25.0%
!!! CACTGAGTTTATTTTATCAA+TGG + chr2.3:54436396-54436415 None:intergenic 25.0%
!!! TATCAACTTTTTCATTCCAT+CGG + chr2.3:54436298-54436317 None:intergenic 25.0%
AAATAGTGAGAAAAGGGTAA+TGG + chr2.3:54435636-54435655 None:intergenic 30.0%
AAATATTGCAAGATTGCTTC+GGG - chr2.3:54436145-54436164 MS.gene52427:CDS 30.0%
ACTGAGAAAATTGATTGTGA+AGG + chr2.3:54436242-54436261 None:intergenic 30.0%
AGAATCCAAAATTGTGAATG+AGG + chr2.3:54435701-54435720 None:intergenic 30.0%
CTACTTCTTCCAAATAAAGT+TGG + chr2.3:54436077-54436096 None:intergenic 30.0%
CTTGAAATGAACATTGTAAG+TGG + chr2.3:54435751-54435770 None:intergenic 30.0%
TGAAGGAGTTAAAGGATTTA+GGG - chr2.3:54436210-54436229 MS.gene52427:CDS 30.0%
! GGTTTCGGATAAATATGTTT+TGG + chr2.3:54436276-54436295 None:intergenic 30.0%
! GTATATAAATCGGTTTAAGG+AGG - chr2.3:54436613-54436632 MS.gene52427:CDS 30.0%
! GTTGATACCTTTAAGAAATG+GGG - chr2.3:54436311-54436330 MS.gene52427:CDS 30.0%
! TCATACCTCATTCACAATTT+TGG - chr2.3:54435693-54435712 MS.gene52427:CDS 30.0%
!! ATCAAATTGTTGATTCAGAG+TGG - chr2.3:54436110-54436129 MS.gene52427:CDS 30.0%
!!! AAAAGGGTAATGGAGTTTTT+GGG + chr2.3:54435626-54435645 None:intergenic 30.0%
!!! AAGTTTTGAAGCAAATTGTG+GGG + chr2.3:54435724-54435743 None:intergenic 30.0%
!!! ATCAACTTTTTCATTCCATC+GGG + chr2.3:54436297-54436316 None:intergenic 30.0%
!!! GAAAGTTTTGAAGCAAATTG+TGG + chr2.3:54435726-54435745 None:intergenic 30.0%
AAACTTGCAGTAAGGAACAT+AGG + chr2.3:54435969-54435988 None:intergenic 35.0%
AACTTGCAGTAAGGAACATA+GGG + chr2.3:54435968-54435987 None:intergenic 35.0%
AAGAAGTTGAGAACTGAATC+AGG + chr2.3:54435786-54435805 None:intergenic 35.0%
AATAGTCCCAACCTATGAAT+TGG - chr2.3:54435998-54436017 MS.gene52427:CDS 35.0%
AATATTGCAAGATTGCTTCG+GGG - chr2.3:54436146-54436165 MS.gene52427:CDS 35.0%
AGAGGTTGAATCTGAATTGT+TGG + chr2.3:54435664-54435683 None:intergenic 35.0%
ATGGATGTTAACATACACTG+AGG + chr2.3:54436377-54436396 None:intergenic 35.0%
ATTGAATCTTGCACAAACCA+AGG - chr2.3:54436670-54436689 MS.gene52427:CDS 35.0%
GAAATGAACATTGTAAGTGG+AGG + chr2.3:54435748-54435767 None:intergenic 35.0%
GAAGAGAGGTTTGCATAAAA+AGG - chr2.3:54436538-54436557 MS.gene52427:CDS 35.0%
GTCTCATCAGTGACTATAAA+CGG + chr2.3:54436581-54436600 None:intergenic 35.0%
GTGAAGGAGTTAAAGGATTT+AGG - chr2.3:54436209-54436228 MS.gene52427:CDS 35.0%
GTGGAGAAATAGTGAGAAAA+GGG + chr2.3:54435642-54435661 None:intergenic 35.0%
TAAGGTCTTGAGATAGAGAA+GGG + chr2.3:54435589-54435608 None:intergenic 35.0%
TATGTTCCTTACTGCAAGTT+TGG - chr2.3:54435968-54435987 MS.gene52427:CDS 35.0%
TTAAGGTCTTGAGATAGAGA+AGG + chr2.3:54435590-54435609 None:intergenic 35.0%
TTTATTTGGAAGAAGTAGCG+TGG - chr2.3:54436079-54436098 MS.gene52427:CDS 35.0%
! AAACTCAGTGATGAGCTTTT+GGG - chr2.3:54436406-54436425 MS.gene52427:CDS 35.0%
! CTCAACTTCTTTAGAAACCA+TGG - chr2.3:54435795-54435814 MS.gene52427:CDS 35.0%
! TAAACTCAGTGATGAGCTTT+TGG - chr2.3:54436405-54436424 MS.gene52427:CDS 35.0%
! TGAGAACTGAATCAGGTTTT+CGG + chr2.3:54435779-54435798 None:intergenic 35.0%
! TTTTTCATTCCATCGGGTTT+CGG + chr2.3:54436291-54436310 None:intergenic 35.0%
!!! GAAAAGGGTAATGGAGTTTT+TGG + chr2.3:54435627-54435646 None:intergenic 35.0%
!!! TATCATGCCAGTTTTTTCCT+TGG + chr2.3:54436690-54436709 None:intergenic 35.0%
ACATAGGGTTCTTAGTGACA+AGG + chr2.3:54435953-54435972 None:intergenic 40.0%
CAGAAGATATTCCACAACTG+AGG + chr2.3:54436519-54436538 None:intergenic 40.0%
CATATTTATCCGAAACCCGA+TGG - chr2.3:54436279-54436298 MS.gene52427:CDS 40.0%
GCACAAACCAAGGAAAAAAC+TGG - chr2.3:54436680-54436699 MS.gene52427:CDS 40.0%
GGTGGAGAAATAGTGAGAAA+AGG + chr2.3:54435643-54435662 None:intergenic 40.0%
GGTTGAATCTGAATTGTTGG+TGG + chr2.3:54435661-54435680 None:intergenic 40.0%
TCTTGTCCAAACTTGCAGTA+AGG + chr2.3:54435977-54435996 None:intergenic 40.0%
TGAGATAGAGAAGGGTTGAA+CGG + chr2.3:54435581-54435600 None:intergenic 40.0%
TTTAACTCCTTCACCAACTC+AGG + chr2.3:54436203-54436222 None:intergenic 40.0%
TTTGGGAATCAGAGAAACCA+TGG + chr2.3:54435815-54435834 None:intergenic 40.0%
! AAACTTTGGCAACACCCTTT+TGG + chr2.3:54435886-54435905 None:intergenic 40.0%
! ATACCTTTAAGAAATGGGGC+TGG - chr2.3:54436315-54436334 MS.gene52427:CDS 40.0%
! CTAAAACACCAAGGGTTTTG+GGG - chr2.3:54436462-54436481 MS.gene52427:CDS 40.0%
! GAGAACTGAATCAGGTTTTC+GGG + chr2.3:54435778-54435797 None:intergenic 40.0%
! GCTAAAACACCAAGGGTTTT+GGG - chr2.3:54436461-54436480 MS.gene52427:CDS 40.0%
! GTGGAATATCTTCTGAAGAG+AGG - chr2.3:54436524-54436543 MS.gene52427:CDS 40.0%
! TGCTAAAACACCAAGGGTTT+TGG - chr2.3:54436460-54436479 MS.gene52427:CDS 40.0%
!! AGCTTTTGGGTCAATCAGTT+GGG - chr2.3:54436419-54436438 MS.gene52427:CDS 40.0%
!! TAAAACACCAAGGGTTTTGG+GGG - chr2.3:54436463-54436482 MS.gene52427:CDS 40.0%
!! TGAGTTGGTGAAGGAGTTAA+AGG - chr2.3:54436202-54436221 MS.gene52427:CDS 40.0%
!! TGGGTTTGGTGAGAAAGTTA+AGG + chr2.3:54435607-54435626 None:intergenic 40.0%
!!! AACCCTTGGTGTTTTAGCAA+TGG + chr2.3:54436459-54436478 None:intergenic 40.0%
!!! GGTAATGGAGTTTTTGGGTT+TGG + chr2.3:54435621-54435640 None:intergenic 40.0%
AATACGCGCTGTCATTGCAA+AGG - chr2.3:54435833-54435852 MS.gene52427:CDS 45.0%
AGACCAGCCCCATTTCTTAA+AGG + chr2.3:54436321-54436340 None:intergenic 45.0%
GAGGTATGACACTGCAAAAG+AGG + chr2.3:54435682-54435701 None:intergenic 45.0%
GGCCATTGCTAAAACACCAA+GGG - chr2.3:54436454-54436473 MS.gene52427:CDS 45.0%
TATTCCACAACTGAGGCTCT+TGG + chr2.3:54436512-54436531 None:intergenic 45.0%
TGCAATGACAGCGCGTATTT+GGG + chr2.3:54435832-54435851 None:intergenic 45.0%
TGGCCATTGCTAAAACACCA+AGG - chr2.3:54436453-54436472 MS.gene52427:CDS 45.0%
TTGCAATGACAGCGCGTATT+TGG + chr2.3:54435833-54435852 None:intergenic 45.0%
TTGGGTCAATCAGTTGGGTT+GGG - chr2.3:54436424-54436443 MS.gene52427:CDS 45.0%
TTTGGGTCAATCAGTTGGGT+TGG - chr2.3:54436423-54436442 MS.gene52427:CDS 45.0%
! TTTGGCAACACCCTTTTGGA+GGG + chr2.3:54435882-54435901 None:intergenic 45.0%
!! GAGCTTTTGGGTCAATCAGT+TGG - chr2.3:54436418-54436437 MS.gene52427:CDS 45.0%
!! GTCAGAGTTAGAAGCACCTT+TGG + chr2.3:54435922-54435941 None:intergenic 45.0%
CATACCAAGAGCCTCAGTTG+TGG - chr2.3:54436505-54436524 MS.gene52427:CDS 50.0%
TATGATCCTTCGCTCCAGAC+TGG + chr2.3:54436489-54436508 None:intergenic 50.0%
TTCCTGCGATCCCTCCAAAA+GGG - chr2.3:54435869-54435888 MS.gene52427:CDS 50.0%
TTTCCTGCGATCCCTCCAAA+AGG - chr2.3:54435868-54435887 MS.gene52427:CDS 50.0%
! CTTTGGCAACACCCTTTTGG+AGG + chr2.3:54435883-54435902 None:intergenic 50.0%
!! CAACTTGCCTGAGTTGGTGA+AGG - chr2.3:54436193-54436212 MS.gene52427:CDS 50.0%
!! TCAGTTGGGTTGGGATGCTA+TGG - chr2.3:54436433-54436452 MS.gene52427:CDS 50.0%
GACAGGCAACTTGCCTGAGT+TGG - chr2.3:54436187-54436206 MS.gene52427:CDS 55.0%
GGATCGCAGGAAAGCAAGCG+TGG + chr2.3:54435861-54435880 None:intergenic 60.0%
! AGACTGGCCCCCAAAACCCT+TGG + chr2.3:54436473-54436492 None:intergenic 60.0%
!! CACCCTTTTGGAGGGATCGC+AGG + chr2.3:54435874-54435893 None:intergenic 60.0%
!!! AAGGGTTTTGGGGGCCAGTC+TGG - chr2.3:54436472-54436491 MS.gene52427:CDS 60.0%
! TGGGGGCCAGTCTGGAGCGA+AGG - chr2.3:54436480-54436499 MS.gene52427:CDS 70.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 54435561 54436712 54435561 ID=MS.gene52427
chr2.3 mRNA 54435561 54436712 54435561 ID=MS.gene52427.t1;Parent=MS.gene52427
chr2.3 exon 54435561 54436712 54435561 ID=MS.gene52427.t1.exon1;Parent=MS.gene52427.t1
chr2.3 CDS 54435561 54436712 54435561 ID=cds.MS.gene52427.t1;Parent=MS.gene52427.t1
Gene Sequence

>MS.gene52427

ATGTTTAACACTCATCTCCGTTCAACCCTTCTCTATCTCAAGACCTTAACTTTCTCACCAAACCCAAAAACTCCATTACCCTTTTCTCACTATTTCTCCACCAACAATTCAGATTCAACCTCTTTTGCAGTGTCATACCTCATTCACAATTTTGGATTCTCCCCACAATTTGCTTCAAAACTTTCCTCCACTTACAATGTTCATTTCAAGACTGCCCGAAAACCTGATTCAGTTCTCAACTTCTTTAGAAACCATGGTTTCTCTGATTCCCAAATACGCGCTGTCATTGCAAAGGAACCACGCTTGCTTTCCTGCGATCCCTCCAAAAGGGTGTTGCCAAAGTTTCAATTTTTACTCTCCAAAGGTGCTTCTAACTCTGACATTGTTAACCTTGTCACTAAGAACCCTATGTTCCTTACTGCAAGTTTGGACAAGAAAATAGTCCCAACCTATGAATTGGTTTATAAATACTTGCAATCTGATAAACACATTCTTGCTTTGTTGAATTGCAATCCAACTTTATTTGGAAGAAGTAGCGTGGAACATAACATCAAATTGTTGATTCAGAGTGGAGTGACAGACATAAATATTGCAAGATTGCTTCGGGGCAATATTAAGTTTTTCATGACAGGCAACTTGCCTGAGTTGGTGAAGGAGTTAAAGGATTTAGGGTTTCATCCTTCACAATCAATTTTCTCAGTAGCATTGATTGCCAAAACATATTTATCCGAAACCCGATGGAATGAAAAAGTTGATACCTTTAAGAAATGGGGCTGGTCTGATGAAGATGTTCTTGAAGCATTTAAAAAGCAACCTCAGTGTATGTTAACATCCATTGATAAAATAAACTCAGTGATGAGCTTTTGGGTCAATCAGTTGGGTTGGGATGCTATGGCCATTGCTAAAACACCAAGGGTTTTGGGGGCCAGTCTGGAGCGAAGGATCATACCAAGAGCCTCAGTTGTGGAATATCTTCTGAAGAGAGGTTTGCATAAAAAGGAAGCAAGTTTAACTTCTCCGTTTATAGTCACTGATGAGACATTCTATGACATGTATATAAATCGGTTTAAGGAGGAGTCTTCTTACCTATTAAAGCTTTATGAAGAAAAATTGAATCTTGCACAAACCAAGGAAAAAACTGGCATGATATGA
Protein sequence

>MS.gene52427.t1

MFNTHLRSTLLYLKTLTFSPNPKTPLPFSHYFSTNNSDSTSFAVSYLIHNFGFSPQFASKLSSTYNVHFKTARKPDSVLNFFRNHGFSDSQIRAVIAKEPRLLSCDPSKRVLPKFQFLLSKGASNSDIVNLVTKNPMFLTASLDKKIVPTYELVYKYLQSDKHILALLNCNPTLFGRSSVEHNIKLLIQSGVTDINIARLLRGNIKFFMTGNLPELVKELKDLGFHPSQSIFSVALIAKTYLSETRWNEKVDTFKKWGWSDEDVLEAFKKQPQCMLTSIDKINSVMSFWVNQLGWDAMAIAKTPRVLGASLERRIIPRASVVEYLLKRGLHKKEASLTSPFIVTDETFYDMYINRFKEESSYLLKLYEEKLNLAQTKEKTGMI