AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene52433

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52433.t1 MTR_2g437180 90.796 402 31 1 1 402 1 396 0.0 729
MS.gene52433.t1 MTR_2g437150 71.921 406 110 2 1 402 1 406 0.0 578
MS.gene52433.t1 MTR_2g437170 72.208 403 108 2 1 399 1 403 0.0 575
MS.gene52433.t1 MTR_2g437120 70.398 402 112 3 1 400 1 397 0.0 548
MS.gene52433.t1 MTR_2g437960 72.818 401 105 2 1 399 1 399 0.0 544
MS.gene52433.t1 MTR_2g437960 72.818 401 105 2 1 399 1 399 0.0 543
MS.gene52433.t1 MTR_2g437160 67.822 404 124 3 1 402 12 411 0.0 535
MS.gene52433.t1 MTR_2g437990 68.812 404 116 4 1 401 1 397 0.0 532
MS.gene52433.t1 MTR_2g076320 66.501 403 128 2 1 401 1 398 0.0 516
MS.gene52433.t1 MTR_2g437940 66.005 403 101 3 1 401 1 369 3.69e-179 503
MS.gene52433.t1 MTR_2g438010 64.268 403 137 2 1 401 21 418 3.70e-179 505
MS.gene52433.t1 MTR_2g437100 69.036 394 109 4 1 386 7 395 8.52e-178 501
MS.gene52433.t1 MTR_2g437240 60.250 400 114 4 36 398 19 410 3.07e-156 447
MS.gene52433.t1 MTR_2g438020 59.530 383 115 4 56 401 72 451 5.27e-148 429
MS.gene52433.t1 MTR_2g437200 59.424 382 114 4 42 386 21 398 8.94e-147 422
MS.gene52433.t1 MTR_2g437130 58.667 375 142 5 31 401 21 386 1.99e-143 413
MS.gene52433.t1 MTR_2g437080 52.162 370 167 5 31 398 21 382 1.36e-123 363
MS.gene52433.t1 MTR_2g437020 53.209 374 159 7 29 394 13 378 6.70e-121 356
MS.gene52433.t1 MTR_2g436440 49.211 380 183 4 21 398 17 388 4.01e-118 349
MS.gene52433.t1 MTR_2g437060 50.275 364 171 4 33 394 38 393 8.81e-116 343
MS.gene52433.t1 MTR_2g437260 48.596 356 172 6 42 393 25 373 1.22e-111 332
MS.gene52433.t1 MTR_2g437040 49.459 370 177 4 31 398 21 382 3.08e-111 331
MS.gene52433.t1 MTR_2g437030 46.787 389 192 5 12 398 93 468 3.05e-109 329
MS.gene52433.t1 MTR_2g436400 48.641 368 172 6 25 386 21 377 5.66e-109 325
MS.gene52433.t1 MTR_2g436460 50.432 347 160 6 44 387 40 377 5.79e-104 312
MS.gene52433.t1 MTR_4g119550 46.610 354 175 5 44 394 46 388 5.99e-102 308
MS.gene52433.t1 MTR_4g120380 44.412 340 180 4 46 383 37 369 4.79e-89 274
MS.gene52433.t1 MTR_2g437160 68.617 188 57 1 217 402 133 320 3.61e-85 262
MS.gene52433.t1 MTR_2g437160 61.481 135 49 1 1 135 12 143 5.61e-44 155
MS.gene52433.t1 MTR_4g120380 44.012 334 179 4 46 378 37 363 1.02e-84 265
MS.gene52433.t1 MTR_4g119580 42.857 343 187 4 43 383 34 369 1.84e-84 262
MS.gene52433.t1 MTR_2g019810 42.183 339 175 8 57 386 33 359 1.16e-71 229
MS.gene52433.t1 MTR_4g049400 72.903 155 37 1 1 155 1 150 1.88e-70 221
MS.gene52433.t1 MTR_2g019840 40.227 353 197 8 38 386 29 371 1.50e-68 221
MS.gene52433.t1 MTR_2g437090 52.047 171 80 1 231 399 1 171 1.75e-56 183
MS.gene52433.t1 MTR_3g450500 30.631 333 222 5 57 383 40 369 5.81e-48 167
MS.gene52433.t1 MTR_4g119570 37.600 250 118 3 135 382 14 227 1.36e-45 157
MS.gene52433.t1 MTR_4g007490 28.775 351 240 6 38 383 22 367 1.25e-39 145
MS.gene52433.t1 MTR_2g436370 42.771 166 88 3 42 207 37 195 9.72e-34 125
MS.gene52433.t1 MTR_8g080990 31.773 299 194 5 88 380 74 368 3.50e-30 120
MS.gene52433.t1 MTR_8g081000 28.146 302 211 3 86 383 85 384 1.04e-28 116
MS.gene52433.t1 MTR_8g081000 28.146 302 211 3 86 383 85 384 1.16e-28 116
MS.gene52433.t1 MTR_8g081000 28.146 302 211 3 86 383 85 384 1.65e-28 115
MS.gene52433.t1 MTR_3g085240 52.174 92 25 2 288 377 174 248 1.10e-19 88.2
MS.gene52433.t1 MTR_3g085240 39.634 164 76 6 20 182 34 175 2.07e-17 81.6
MS.gene52433.t1 MTR_2g436380 40.404 99 56 2 231 329 1 96 1.22e-14 74.3
MS.gene52433.t1 MTR_2g437680 78.788 33 7 0 237 269 2 34 5.64e-12 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52433.t1 AT5G07900 31.025 361 240 7 30 384 43 400 1.14e-52 181
MS.gene52433.t1 AT1G21150 31.595 326 214 4 57 377 57 378 3.80e-46 163
MS.gene52433.t1 AT1G21150 31.138 334 221 4 49 377 13 342 9.84e-46 161
MS.gene52433.t1 AT1G21150 31.595 326 214 4 57 377 121 442 2.47e-45 162
MS.gene52433.t1 AT1G61970 27.119 354 212 9 57 371 53 399 5.93e-30 120
MS.gene52433.t1 AT1G61970 27.119 354 212 9 57 371 53 399 5.93e-30 120
MS.gene52433.t1 AT1G61970 27.119 354 212 9 57 371 53 399 5.93e-30 120
MS.gene52433.t1 AT1G61970 27.119 354 212 9 57 371 53 399 5.93e-30 120
MS.gene52433.t1 AT1G61970 27.119 354 212 9 57 371 53 399 5.93e-30 120
MS.gene52433.t1 AT1G61970 27.119 354 212 9 57 371 53 399 5.93e-30 120
MS.gene52433.t1 AT1G61970 27.119 354 212 9 57 371 53 399 5.93e-30 120
MS.gene52433.t1 AT1G61990 28.056 360 200 8 57 373 53 396 7.35e-30 119
MS.gene52433.t1 AT1G61990 28.056 360 200 8 57 373 53 396 7.35e-30 119
MS.gene52433.t1 AT1G61980 25.549 364 221 8 57 379 53 407 4.67e-28 114
MS.gene52433.t1 AT1G61980 25.549 364 221 8 57 379 53 407 4.67e-28 114
MS.gene52433.t1 AT1G61980 25.549 364 221 8 57 379 53 407 4.67e-28 114
MS.gene52433.t1 AT5G64950 26.891 357 247 7 38 383 22 375 3.45e-26 109
MS.gene52433.t1 AT3G46950 28.358 268 181 5 35 300 30 288 2.31e-25 107
MS.gene52433.t1 AT1G62120 25.956 366 220 8 57 386 57 407 7.11e-25 105
MS.gene52433.t1 AT1G62150 23.058 399 230 10 57 382 59 453 9.36e-22 97.1
MS.gene52433.t1 AT1G62010 25.150 334 197 6 89 386 69 385 8.12e-21 94.0
MS.gene52433.t1 AT1G61960 28.862 246 170 4 57 301 53 294 1.04e-20 94.0
MS.gene52433.t1 AT1G62110 24.444 360 244 9 34 381 30 373 4.92e-18 86.3
MS.gene52433.t1 AT5G23930 22.642 424 243 8 27 375 22 435 1.98e-16 81.3
MS.gene52433.t1 AT1G62085 25.301 332 230 9 57 381 56 376 3.71e-16 80.5
MS.gene52433.t1 AT1G62085 25.301 332 230 9 57 381 56 376 3.71e-16 80.5
MS.gene52433.t1 AT1G56380 24.121 398 221 15 55 395 15 388 3.74e-14 73.9
MS.gene52433.t1 AT1G56380 24.121 398 221 15 55 395 26 399 3.95e-14 73.9

Find 70 sgRNAs with CRISPR-Local

Find 91 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGAGCAAGTTTGTCTTTA+AGG 0.043675 2.3:-54384397 MS.gene52433:CDS
ATCAATTTGATGACTGATTT+TGG 0.089088 2.3:-54384891 MS.gene52433:CDS
AAAAGAGGGTTGTTGAATTT+TGG 0.120653 2.3:+54385428 None:intergenic
CTGAAAAGGCCATCTATATT+TGG 0.156515 2.3:-54384837 MS.gene52433:CDS
AAGAAATTGATAACTGAATT+AGG 0.176367 2.3:+54385227 None:intergenic
GAGAATCTTGTGAGTGAAAA+TGG 0.247387 2.3:+54385386 None:intergenic
GATCCTTCAATGGCTACTTT+TGG 0.277843 2.3:-54384765 MS.gene52433:CDS
TTGGAAGAAGTTCATGGTTT+AGG 0.289669 2.3:-54384792 MS.gene52433:CDS
TGGCATGCCATTCACTAATT+AGG 0.298571 2.3:-54384307 None:intergenic
GAAAATGGGAATGAGAAGTT+TGG 0.301232 2.3:+54385401 None:intergenic
CTTTCCCAGAATGTTGCTTT+AGG 0.307195 2.3:-54385476 MS.gene52433:CDS
TGATGCCTAAAGCAACATTC+TGG 0.327907 2.3:+54385471 None:intergenic
CCAATTGGGTTGGGATTCCT+TGG 0.333577 2.3:-54384568 MS.gene52433:CDS
TCCAAACCATGTTGAAGAAA+TGG 0.334748 2.3:-54385502 None:intergenic
AACTGATTTGATTAAGTCAT+TGG 0.339262 2.3:-54384811 MS.gene52433:CDS
GCAAAGAATGATATCCTTGT+TGG 0.359776 2.3:+54384971 None:intergenic
TTGTTCTCCTTTGTGTATGC+AGG 0.375653 2.3:+54384330 None:intergenic
ACTAAATGTCCACATATGTT+TGG 0.382004 2.3:-54384540 MS.gene52433:CDS
CAAAGCTTTCAACAACAATC+AGG 0.385654 2.3:-54385273 MS.gene52433:CDS
ATCAGATGAAGTAGCACCTT+TGG 0.385922 2.3:+54385091 None:intergenic
GAGAAGTTTGGGTTCAAAAG+AGG 0.413500 2.3:+54385413 None:intergenic
TTGGGTCAACCAATTGGGTT+GGG 0.418889 2.3:-54384577 MS.gene52433:CDS
CTTGGGCAAAATTATATTGT+GGG 0.422253 2.3:+54385130 None:intergenic
AAAATGGGAATGAGAAGTTT+GGG 0.423820 2.3:+54385402 None:intergenic
ATTAGCCACAACAAGGTGAT+AGG 0.433161 2.3:+54384914 None:intergenic
AAGTCATTGGAAGAAGTTCA+TGG 0.433750 2.3:-54384798 MS.gene52433:CDS
TTTCTAGATTGCTTCTGAAA+AGG 0.437099 2.3:-54384851 MS.gene52433:CDS
TCAGTTGAACCAAATATAGA+TGG 0.441181 2.3:+54384828 None:intergenic
CCAAGGAATCCCAACCCAAT+TGG 0.447231 2.3:+54384568 None:intergenic
TTTAGGATTTGATCCTTCAA+TGG 0.450730 2.3:-54384775 MS.gene52433:CDS
TCTAATGATGATTCGTATGT+CGG 0.457132 2.3:+54385181 None:intergenic
TCGCAAAATTCGAGGGTTTG+CGG 0.479537 2.3:+54385052 None:intergenic
AGAAGTTTGGGTTCAAAAGA+GGG 0.481605 2.3:+54385414 None:intergenic
GTTGCATCCTAGTTTGATGT+TGG 0.488218 2.3:-54384634 MS.gene52433:CDS
GATGCCTAAAGCAACATTCT+GGG 0.494312 2.3:+54385472 None:intergenic
TTTGGGTCAACCAATTGGGT+TGG 0.496217 2.3:-54384578 MS.gene52433:CDS
AAGCTACTTCGCAAAATTCG+AGG 0.497556 2.3:+54385044 None:intergenic
TCCCCAAAAGTAGCCATTGA+AGG 0.500530 2.3:+54384762 None:intergenic
ACTTGGGCAAAATTATATTG+TGG 0.500709 2.3:+54385129 None:intergenic
TTGGTTATAGTTTACATCAA+AGG 0.507419 2.3:-54384521 MS.gene52433:CDS
TAATTCCTATCACCTTGTTG+TGG 0.508203 2.3:-54384919 MS.gene52433:CDS
AAAGCTTTGAGAGCAGATTG+AGG 0.511231 2.3:+54385287 None:intergenic
GAAATCACCTAATTAGTGAA+TGG 0.511658 2.3:+54384300 None:intergenic
AATTTCTCAGAATGAGCAAA+TGG 0.512809 2.3:+54384423 None:intergenic
AATTGCAAAACTGAGGCCCT+TGG 0.520839 2.3:+54384492 None:intergenic
AGAATCTTGTGAGTGAAAAT+GGG 0.534017 2.3:+54385387 None:intergenic
AAACTATAACCAAACATATG+TGG 0.543018 2.3:+54384531 None:intergenic
TTCTGACTCTGATGTTGTGG+TGG 0.553341 2.3:+54385364 None:intergenic
ATTGAAGCCAACATCAAACT+AGG 0.554840 2.3:+54384627 None:intergenic
TGATTCTGACTCTGATGTTG+TGG 0.556453 2.3:+54385361 None:intergenic
TTATCTATTAAAGCTATATG+TGG 0.557272 2.3:-54384364 MS.gene52433:CDS
TACATCAAAGGATCATTCCA+AGG 0.557901 2.3:-54384509 MS.gene52433:CDS
TGAAATCAAAATTGTTGATG+AGG 0.559601 2.3:+54385312 None:intergenic
AGCTACTTCGCAAAATTCGA+GGG 0.561434 2.3:+54385045 None:intergenic
ATGAGGTACGATACAGCAAA+TGG 0.565479 2.3:+54385329 None:intergenic
TTGGGCAAAATTATATTGTG+GGG 0.586920 2.3:+54385131 None:intergenic
AAGAAACCATTTCTTCAACA+TGG 0.592220 2.3:+54385496 None:intergenic
TGGACATTTAGTAAGTTCCA+AGG 0.592713 2.3:+54384551 None:intergenic
GAGCAAGTTTGTCTTTAAGG+AGG 0.592819 2.3:-54384394 MS.gene52433:CDS
ATGTATGAGTAAAACACGGT+GGG 0.613074 2.3:-54384721 MS.gene52433:CDS
ACATCAAAGGATCATTCCAA+GGG 0.634178 2.3:-54384508 MS.gene52433:CDS
CAAAAGAAATTGCAAAACTG+AGG 0.646915 2.3:+54384485 None:intergenic
AATTGATATTAGCCACAACA+AGG 0.659212 2.3:+54384907 None:intergenic
AATGAAACCTGCATACACAA+AGG 0.664808 2.3:-54384337 MS.gene52433:CDS
GGTTGTAATGAAAGTAACCA+TGG 0.672923 2.3:+54385152 None:intergenic
TCATCATTAGAAAAGCGCCA+TGG 0.688476 2.3:-54385169 MS.gene52433:CDS
AGGTACGATACAGCAAATGG+TGG 0.691130 2.3:+54385332 None:intergenic
GCATACACAAAGGAGAACAA+TGG 0.692068 2.3:-54384327 MS.gene52433:CDS
AATGTATGAGTAAAACACGG+TGG 0.729131 2.3:-54384722 MS.gene52433:CDS
AGAAATGTATGAGTAAAACA+CGG 0.759128 2.3:-54384725 MS.gene52433:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATAGAAAAAATTCAAACTT+GGG + chr2.3:54384692-54384711 None:intergenic 20.0%
!! TTATCTATTAAAGCTATATG+TGG - chr2.3:54385438-54385457 MS.gene52433:CDS 20.0%
!!! AAGAAATTGATAACTGAATT+AGG + chr2.3:54384578-54384597 None:intergenic 20.0%
!!! AAGTTGATGTTTTTAAGAAA+TGG - chr2.3:54385110-54385129 MS.gene52433:CDS 20.0%
!!! AGTTGATGTTTTTAAGAAAT+GGG - chr2.3:54385111-54385130 MS.gene52433:CDS 20.0%
!!! TAATTTTGTGATGCATTTTT+GGG - chr2.3:54385207-54385226 MS.gene52433:CDS 20.0%
!!! TTAATTTTGTGATGCATTTT+TGG - chr2.3:54385206-54385225 MS.gene52433:CDS 20.0%
!!! TTTGAATTTTTTCTATCCAA+AGG - chr2.3:54384695-54384714 MS.gene52433:CDS 20.0%
! AAACTATAACCAAACATATG+TGG + chr2.3:54385274-54385293 None:intergenic 25.0%
! AGAAATGTATGAGTAAAACA+CGG - chr2.3:54385077-54385096 MS.gene52433:CDS 25.0%
! GGATAGAAAAAATTCAAACT+TGG + chr2.3:54384693-54384712 None:intergenic 25.0%
! TACTGAACAATTGAAAAAGA+GGG + chr2.3:54384799-54384818 None:intergenic 25.0%
! TGAAATCAAAATTGTTGATG+AGG + chr2.3:54384493-54384512 None:intergenic 25.0%
! TTGGTTATAGTTTACATCAA+AGG - chr2.3:54385281-54385300 MS.gene52433:CDS 25.0%
!! TGTTTTACTCATACATTTCT+TGG + chr2.3:54385077-54385096 None:intergenic 25.0%
!! TTGCAATTTCTTTTGATGAA+AGG - chr2.3:54385325-54385344 MS.gene52433:CDS 25.0%
!!! AACTGATTTGATTAAGTCAT+TGG - chr2.3:54384991-54385010 MS.gene52433:CDS 25.0%
!!! AAGCTTTTTTTCAAGCATTT+AGG - chr2.3:54385146-54385165 MS.gene52433:CDS 25.0%
!!! ATCAATTTGATGACTGATTT+TGG - chr2.3:54384911-54384930 MS.gene52433:CDS 25.0%
!!! GTTGATGTTTTTAAGAAATG+GGG - chr2.3:54385112-54385131 MS.gene52433:CDS 25.0%
AAAATGGGAATGAGAAGTTT+GGG + chr2.3:54384403-54384422 None:intergenic 30.0%
AATTGATATTAGCCACAACA+AGG + chr2.3:54384898-54384917 None:intergenic 30.0%
AATTTCTCAGAATGAGCAAA+TGG + chr2.3:54385382-54385401 None:intergenic 30.0%
ACTAAATGTCCACATATGTT+TGG - chr2.3:54385262-54385281 MS.gene52433:CDS 30.0%
ACTTGGGCAAAATTATATTG+TGG + chr2.3:54384676-54384695 None:intergenic 30.0%
AGAATCTTGTGAGTGAAAAT+GGG + chr2.3:54384418-54384437 None:intergenic 30.0%
CAAAAGAAATTGCAAAACTG+AGG + chr2.3:54385320-54385339 None:intergenic 30.0%
CTACTGAACAATTGAAAAAG+AGG + chr2.3:54384800-54384819 None:intergenic 30.0%
CTTGGGCAAAATTATATTGT+GGG + chr2.3:54384675-54384694 None:intergenic 30.0%
TCAGTTGAACCAAATATAGA+TGG + chr2.3:54384977-54384996 None:intergenic 30.0%
TCTAATGATGATTCGTATGT+CGG + chr2.3:54384624-54384643 None:intergenic 30.0%
TTGGGCAAAATTATATTGTG+GGG + chr2.3:54384674-54384693 None:intergenic 30.0%
! AAAAGAGGGTTGTTGAATTT+TGG + chr2.3:54384377-54384396 None:intergenic 30.0%
! AAAGAGGGTTGTTGAATTTT+GGG + chr2.3:54384376-54384395 None:intergenic 30.0%
! TTTAGGATTTGATCCTTCAA+TGG - chr2.3:54385027-54385046 MS.gene52433:CDS 30.0%
! TTTCTAGATTGCTTCTGAAA+AGG - chr2.3:54384951-54384970 MS.gene52433:CDS 30.0%
!! ATGTTTTTAAGAAATGGGGT+TGG - chr2.3:54385116-54385135 MS.gene52433:CDS 30.0%
!! TAGGTTTTTGAAAACCAACA+AGG - chr2.3:54384817-54384836 MS.gene52433:CDS 30.0%
!!! CTCTTTTTCAATTGTTCAGT+AGG - chr2.3:54384798-54384817 MS.gene52433:CDS 30.0%
AAGTCATTGGAAGAAGTTCA+TGG - chr2.3:54385004-54385023 MS.gene52433:CDS 35.0%
AATGAAACCTGCATACACAA+AGG - chr2.3:54385465-54385484 MS.gene52433:CDS 35.0%
AATGTATGAGTAAAACACGG+TGG - chr2.3:54385080-54385099 MS.gene52433:CDS 35.0%
ACATCAAAGGATCATTCCAA+GGG - chr2.3:54385294-54385313 MS.gene52433:CDS 35.0%
ATGTATGAGTAAAACACGGT+GGG - chr2.3:54385081-54385100 MS.gene52433:CDS 35.0%
ATTGAAGCCAACATCAAACT+AGG + chr2.3:54385178-54385197 None:intergenic 35.0%
CAAAGCTTTCAACAACAATC+AGG - chr2.3:54384529-54384548 MS.gene52433:CDS 35.0%
CTGAAAAGGCCATCTATATT+TGG - chr2.3:54384965-54384984 MS.gene52433:CDS 35.0%
CTTGAGCAAGTTTGTCTTTA+AGG - chr2.3:54385405-54385424 MS.gene52433:CDS 35.0%
GAAAATGGGAATGAGAAGTT+TGG + chr2.3:54384404-54384423 None:intergenic 35.0%
GAGAATCTTGTGAGTGAAAA+TGG + chr2.3:54384419-54384438 None:intergenic 35.0%
GCAAAGAATGATATCCTTGT+TGG + chr2.3:54384834-54384853 None:intergenic 35.0%
GGTTGTAATGAAAGTAACCA+TGG + chr2.3:54384653-54384672 None:intergenic 35.0%
TAATTCCTATCACCTTGTTG+TGG - chr2.3:54384883-54384902 MS.gene52433:CDS 35.0%
TACATCAAAGGATCATTCCA+AGG - chr2.3:54385293-54385312 MS.gene52433:CDS 35.0%
TGGACATTTAGTAAGTTCCA+AGG + chr2.3:54385254-54385273 None:intergenic 35.0%
TTGGAAGAAGTTCATGGTTT+AGG - chr2.3:54385010-54385029 MS.gene52433:CDS 35.0%
! AAGAGGGTTGTTGAATTTTG+GGG + chr2.3:54384375-54384394 None:intergenic 35.0%
! AGAAGTTTGGGTTCAAAAGA+GGG + chr2.3:54384391-54384410 None:intergenic 35.0%
!!! ATCCTTCAATGGCTACTTTT+GGG - chr2.3:54385038-54385057 MS.gene52433:CDS 35.0%
!!! CATTTTTGGGTCAACCAATT+GGG - chr2.3:54385220-54385239 MS.gene52433:CDS 35.0%
!!! TTTTGGGGTTGTTGATTTTG+TGG + chr2.3:54384360-54384379 None:intergenic 35.0%
AAGCTACTTCGCAAAATTCG+AGG + chr2.3:54384761-54384780 None:intergenic 40.0%
AGCTACTTCGCAAAATTCGA+GGG + chr2.3:54384760-54384779 None:intergenic 40.0%
ATCAGATGAAGTAGCACCTT+TGG + chr2.3:54384714-54384733 None:intergenic 40.0%
ATGAGGTACGATACAGCAAA+TGG + chr2.3:54384476-54384495 None:intergenic 40.0%
ATTAGCCACAACAAGGTGAT+AGG + chr2.3:54384891-54384910 None:intergenic 40.0%
GATGCCTAAAGCAACATTCT+GGG + chr2.3:54384333-54384352 None:intergenic 40.0%
GCATACACAAAGGAGAACAA+TGG - chr2.3:54385475-54385494 MS.gene52433:CDS 40.0%
GTTGCATCCTAGTTTGATGT+TGG - chr2.3:54385168-54385187 MS.gene52433:CDS 40.0%
TGATGCCTAAAGCAACATTC+TGG + chr2.3:54384334-54384353 None:intergenic 40.0%
TGATTCTGACTCTGATGTTG+TGG + chr2.3:54384444-54384463 None:intergenic 40.0%
TGTCGGAGTGTGAAAAATCA+CGG + chr2.3:54384607-54384626 None:intergenic 40.0%
TTGTTCTCCTTTGTGTATGC+AGG + chr2.3:54385475-54385494 None:intergenic 40.0%
! GAGAAGTTTGGGTTCAAAAG+AGG + chr2.3:54384392-54384411 None:intergenic 40.0%
! GAGCAAGTTTGTCTTTAAGG+AGG - chr2.3:54385408-54385427 MS.gene52433:CDS 40.0%
! TCGAATTTTGCGAAGTAGCT+TGG - chr2.3:54384760-54384779 MS.gene52433:CDS 40.0%
!! AAAGCTTTGAGAGCAGATTG+AGG + chr2.3:54384518-54384537 None:intergenic 40.0%
!! CTTTCCCAGAATGTTGCTTT+AGG - chr2.3:54384326-54384345 MS.gene52433:CDS 40.0%
!! GATCCTTCAATGGCTACTTT+TGG - chr2.3:54385037-54385056 MS.gene52433:CDS 40.0%
!! TCATCATTAGAAAAGCGCCA+TGG - chr2.3:54384633-54384652 MS.gene52433:CDS 40.0%
!!! GCATTTTTGGGTCAACCAAT+TGG - chr2.3:54385219-54385238 MS.gene52433:CDS 40.0%
!!! TCCTTCAATGGCTACTTTTG+GGG - chr2.3:54385039-54385058 MS.gene52433:CDS 40.0%
AATTGCAAAACTGAGGCCCT+TGG + chr2.3:54385313-54385332 None:intergenic 45.0%
AGGTACGATACAGCAAATGG+TGG + chr2.3:54384473-54384492 None:intergenic 45.0%
TCCCCAAAAGTAGCCATTGA+AGG + chr2.3:54385043-54385062 None:intergenic 45.0%
TCGCAAAATTCGAGGGTTTG+CGG + chr2.3:54384753-54384772 None:intergenic 45.0%
TTCTGACTCTGATGTTGTGG+TGG + chr2.3:54384441-54384460 None:intergenic 45.0%
TTGGGTCAACCAATTGGGTT+GGG - chr2.3:54385225-54385244 MS.gene52433:CDS 45.0%
TTTGGGTCAACCAATTGGGT+TGG - chr2.3:54385224-54385243 MS.gene52433:CDS 45.0%
CCAAGGAATCCCAACCCAAT+TGG + chr2.3:54385237-54385256 None:intergenic 50.0%
!! CCAATTGGGTTGGGATTCCT+TGG - chr2.3:54385234-54385253 MS.gene52433:CDS 50.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 54384308 54385516 54384308 ID=MS.gene52433
chr2.3 mRNA 54384308 54385516 54384308 ID=MS.gene52433.t1;Parent=MS.gene52433
chr2.3 exon 54384308 54385516 54384308 ID=MS.gene52433.t1.exon1;Parent=MS.gene52433.t1
chr2.3 CDS 54384308 54385516 54384308 ID=cds.MS.gene52433.t1;Parent=MS.gene52433.t1
Gene Sequence

>MS.gene52433

ATGTTGAAGAAATGGTTTCTTTCCCAGAATGTTGCTTTAGGCATCATCACCACAAAATCAACAACCCCAAAATTCAACAACCCTCTTTTGAACCCAAACTTCTCATTCCCATTTTCACTCACAAGATTCTCCACCACAACATCAGAGTCAGAATCAGTCACACCACCATTTGCTGTATCGTACCTCATCAACAATTTTGATTTCACTCCTCAATCTGCTCTCAAAGCTTTCAACAACAATCAGGTTCTTTTCAAATCTGCAGAAAATCCTAATTCAGTTATCAATTTCTTCAAAAACCGTGATTTTTCACACTCCGACATACGAATCATCATTAGAAAAGCGCCATGGTTACTTTCATTACAACCCCACAATATAATTTTGCCCAAGTTTGAATTTTTTCTATCCAAAGGTGCTACTTCATCTGATATTGTTTCATTCATAACCGCAAACCCTCGAATTTTGCGAAGTAGCTTGGAGAAACGAATAATCCCTCTTTTTCAATTGTTCAGTAGGTTTTTGAAAACCAACAAGGATATCATTCTTTGCTTACTTCGACATTCGACTTATGTTACTTTTAATTCCTATCACCTTGTTGTGGCTAATATCAATTTGATGACTGATTTTGGAGTTTCTGATTCTGTCATTTCTAGATTGCTTCTGAAAAGGCCATCTATATTTGGTTCAACTGATTTGATTAAGTCATTGGAAGAAGTTCATGGTTTAGGATTTGATCCTTCAATGGCTACTTTTGGGGATGCTTTGTTTGCCAAGAAATGTATGAGTAAAACACGGTGGGATGAGAAAGTTGATGTTTTTAAGAAATGGGGTTGGTTTGATGAAGCTTTTTTTCAAGCATTTAGGTTGCATCCTAGTTTGATGTTGGCTTCAATTGAAAAGATTAATTTTGTGATGCATTTTTGGGTCAACCAATTGGGTTGGGATTCCTTGGAACTTACTAAATGTCCACATATGTTTGGTTATAGTTTACATCAAAGGATCATTCCAAGGGCCTCAGTTTTGCAATTTCTTTTGATGAAAGGTTTGCGAGATAAGAATGAAAGCTTAGTTACACCATTTGCTCATTCTGAGAAATTTTTCTTGAGCAAGTTTGTCTTTAAGGAGGAGTCTGATTATCTATTAAAGCTATATGTGGAAAAAATGAAACCTGCATACACAAAGGAGAACAATGGCATGCCATTCACTAATTAG
Protein sequence

>MS.gene52433.t1

MLKKWFLSQNVALGIITTKSTTPKFNNPLLNPNFSFPFSLTRFSTTTSESESVTPPFAVSYLINNFDFTPQSALKAFNNNQVLFKSAENPNSVINFFKNRDFSHSDIRIIIRKAPWLLSLQPHNIILPKFEFFLSKGATSSDIVSFITANPRILRSSLEKRIIPLFQLFSRFLKTNKDIILCLLRHSTYVTFNSYHLVVANINLMTDFGVSDSVISRLLLKRPSIFGSTDLIKSLEEVHGLGFDPSMATFGDALFAKKCMSKTRWDEKVDVFKKWGWFDEAFFQAFRLHPSLMLASIEKINFVMHFWVNQLGWDSLELTKCPHMFGYSLHQRIIPRASVLQFLLMKGLRDKNESLVTPFAHSEKFFLSKFVFKEESDYLLKLYVEKMKPAYTKENNGMPFTN