AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene00326

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00326.t1 MTR_2g437100 79.951 409 73 3 1 405 7 410 0.0 639
MS.gene00326.t1 MTR_2g437170 78.571 392 80 2 1 390 1 390 0.0 623
MS.gene00326.t1 MTR_2g437150 77.238 391 85 2 1 389 1 389 0.0 615
MS.gene00326.t1 MTR_2g437120 69.647 425 102 4 1 405 1 418 0.0 566
MS.gene00326.t1 MTR_2g438010 71.795 390 103 2 1 390 21 403 0.0 564
MS.gene00326.t1 MTR_2g437960 73.469 392 100 3 1 392 1 388 0.0 550
MS.gene00326.t1 MTR_2g437960 73.469 392 100 3 1 392 1 388 0.0 550
MS.gene00326.t1 MTR_2g437160 70.769 390 108 3 1 390 12 395 0.0 549
MS.gene00326.t1 MTR_2g437180 69.231 390 110 2 1 390 1 380 0.0 530
MS.gene00326.t1 MTR_2g076320 69.231 390 113 2 1 390 1 383 0.0 523
MS.gene00326.t1 MTR_2g437990 68.718 390 114 3 1 390 1 382 0.0 522
MS.gene00326.t1 MTR_2g437940 69.231 390 84 2 1 390 1 354 0.0 521
MS.gene00326.t1 MTR_2g437200 61.893 391 112 2 35 390 10 398 8.10e-159 453
MS.gene00326.t1 MTR_2g437240 61.735 392 105 3 36 392 19 400 3.08e-157 449
MS.gene00326.t1 MTR_2g438020 60.000 370 111 2 56 390 70 437 7.63e-148 429
MS.gene00326.t1 MTR_2g437130 60.615 358 132 3 31 388 21 369 4.22e-143 412
MS.gene00326.t1 MTR_2g436440 52.703 370 165 3 21 390 17 376 1.76e-126 370
MS.gene00326.t1 MTR_2g437080 52.589 367 157 4 36 395 26 382 2.89e-126 370
MS.gene00326.t1 MTR_2g437060 52.011 373 167 6 18 390 25 385 2.03e-123 363
MS.gene00326.t1 MTR_2g437020 53.825 366 155 6 27 390 17 370 3.34e-123 362
MS.gene00326.t1 MTR_2g436400 49.867 377 163 5 16 390 25 377 2.54e-120 354
MS.gene00326.t1 MTR_2g437030 49.864 369 174 4 22 390 99 456 3.49e-112 337
MS.gene00326.t1 MTR_2g437040 48.787 371 165 4 22 388 19 368 7.97e-111 330
MS.gene00326.t1 MTR_4g119550 48.529 340 169 3 52 390 46 380 4.46e-109 326
MS.gene00326.t1 MTR_2g437260 47.297 370 179 7 39 402 23 382 4.03e-108 323
MS.gene00326.t1 MTR_2g436460 49.708 342 166 4 50 390 40 376 1.77e-100 303
MS.gene00326.t1 MTR_4g119580 44.444 351 186 3 43 393 34 375 4.85e-98 297
MS.gene00326.t1 MTR_4g120380 45.322 342 178 3 46 387 37 369 1.17e-94 288
MS.gene00326.t1 MTR_4g120380 45.075 335 174 4 46 379 37 362 2.39e-89 276
MS.gene00326.t1 MTR_2g437160 72.515 171 47 0 220 390 134 304 4.52e-83 257
MS.gene00326.t1 MTR_2g437160 48.617 253 99 9 1 239 12 247 1.73e-53 181
MS.gene00326.t1 MTR_2g019810 43.149 343 172 8 59 392 33 361 1.94e-76 241
MS.gene00326.t1 MTR_2g019840 39.945 363 197 7 38 392 24 373 7.78e-76 241
MS.gene00326.t1 MTR_2g437090 54.430 158 72 0 233 390 1 158 1.80e-56 183
MS.gene00326.t1 MTR_4g049400 60.510 157 55 2 1 157 1 150 3.06e-53 177
MS.gene00326.t1 MTR_3g450500 29.201 363 252 3 34 393 15 375 2.52e-51 176
MS.gene00326.t1 MTR_4g119570 38.956 249 116 3 140 388 17 229 4.61e-49 166
MS.gene00326.t1 MTR_4g007490 29.155 367 248 6 30 393 16 373 5.51e-45 160
MS.gene00326.t1 MTR_2g436370 44.022 184 86 3 14 197 19 185 2.49e-39 140
MS.gene00326.t1 MTR_8g081000 29.043 303 211 2 88 388 85 385 2.47e-33 129
MS.gene00326.t1 MTR_8g081000 29.043 303 211 2 88 388 85 385 2.91e-33 129
MS.gene00326.t1 MTR_8g081000 29.043 303 211 2 88 388 85 385 3.54e-33 129
MS.gene00326.t1 MTR_8g080990 30.201 298 204 2 89 384 73 368 8.52e-33 127
MS.gene00326.t1 MTR_3g085240 60.870 92 19 1 290 381 174 248 1.09e-26 107
MS.gene00326.t1 MTR_3g085240 40.123 162 72 5 20 180 34 171 3.64e-16 78.2
MS.gene00326.t1 MTR_2g436380 59.016 61 25 0 233 293 1 61 1.17e-17 83.2
MS.gene00326.t1 MTR_4g119615 55.102 49 22 0 332 380 26 74 4.00e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00326.t1 AT5G07900 30.471 361 244 4 30 387 43 399 2.41e-57 193
MS.gene00326.t1 AT1G21150 32.022 356 228 7 40 385 33 384 5.56e-47 166
MS.gene00326.t1 AT1G21150 32.022 356 228 7 40 385 97 448 2.04e-46 166
MS.gene00326.t1 AT1G21150 32.941 340 217 6 53 385 13 348 3.41e-46 162
MS.gene00326.t1 AT5G64950 28.495 372 252 8 26 388 10 376 3.24e-33 128
MS.gene00326.t1 AT1G61990 27.851 377 207 10 59 389 53 410 8.55e-33 128
MS.gene00326.t1 AT1G61990 27.851 377 207 10 59 389 53 410 8.55e-33 128
MS.gene00326.t1 AT1G61970 26.611 357 214 9 57 373 51 399 3.84e-30 120
MS.gene00326.t1 AT1G61970 26.611 357 214 9 57 373 51 399 3.84e-30 120
MS.gene00326.t1 AT1G61970 26.611 357 214 9 57 373 51 399 3.84e-30 120
MS.gene00326.t1 AT1G61970 26.611 357 214 9 57 373 51 399 3.84e-30 120
MS.gene00326.t1 AT1G61970 26.611 357 214 9 57 373 51 399 3.84e-30 120
MS.gene00326.t1 AT1G61970 26.611 357 214 9 57 373 51 399 3.84e-30 120
MS.gene00326.t1 AT1G61970 26.611 357 214 9 57 373 51 399 3.84e-30 120
MS.gene00326.t1 AT1G61980 26.667 360 218 7 59 379 53 405 2.45e-29 118
MS.gene00326.t1 AT1G61980 26.667 360 218 7 59 379 53 405 2.45e-29 118
MS.gene00326.t1 AT1G61980 26.667 360 218 7 59 379 53 405 2.45e-29 118
MS.gene00326.t1 AT1G62120 26.667 330 203 6 59 352 57 383 6.00e-25 106
MS.gene00326.t1 AT3G46950 27.138 269 185 4 35 302 30 288 7.14e-24 103
MS.gene00326.t1 AT1G61960 29.032 248 169 5 57 302 51 293 9.17e-20 91.3
MS.gene00326.t1 AT1G62110 27.652 264 176 7 45 302 40 294 1.55e-19 90.5
MS.gene00326.t1 AT1G62010 25.085 295 180 4 94 352 72 361 4.59e-18 85.9
MS.gene00326.t1 AT1G62150 26.275 255 168 5 57 302 57 300 4.03e-17 83.6
MS.gene00326.t1 AT1G62085 26.877 253 165 5 59 302 56 297 4.11e-17 83.2
MS.gene00326.t1 AT1G62085 26.877 253 165 5 59 302 56 297 4.11e-17 83.2
MS.gene00326.t1 AT5G23930 27.037 270 184 6 27 293 22 281 1.81e-16 81.3

Find 64 sgRNAs with CRISPR-Local

Find 88 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAATTTGACGACTGATTT+TGG 0.089239 2.1:-56246995 MS.gene00326:CDS
AAAAGAGGGTTGTTGAATTT+TGG 0.120653 2.1:+56247538 None:intergenic
TGATTCCTATAACAACTTTA+TGG 0.155706 2.1:+56247581 None:intergenic
CAAACAAGACCATCTATATT+TGG 0.180790 2.1:-56246941 MS.gene00326:CDS
TCGTATCTCATCAATAATTT+TGG 0.189747 2.1:-56247421 MS.gene00326:CDS
CAGAAGCTTCTGAGTGAAAT+TGG 0.201963 2.1:+56247496 None:intergenic
TTGGAGGAAGTTAAGGGTTT+AGG 0.213631 2.1:-56246896 MS.gene00326:CDS
ATAACAGAAGCAGGCTTATC+TGG 0.236242 2.1:+56247340 None:intergenic
TGGAGGAAGTTAAGGGTTTA+GGG 0.236533 2.1:-56246895 MS.gene00326:CDS
CATCCTTCAACAACTACTTT+TGG 0.271023 2.1:-56246869 MS.gene00326:CDS
AAAGATTTGATAGCTGATTC+AGG 0.315111 2.1:+56247391 None:intergenic
ATCAGAGGAATAAGCATCTT+TGG 0.317049 2.1:+56247195 None:intergenic
GATTCCTATAACAACTTTAT+GGG 0.322085 2.1:+56247582 None:intergenic
TAACTCATTGGAGGAAGTTA+AGG 0.330911 2.1:-56246903 MS.gene00326:CDS
AGAAAACATTTGTGACAGTT+TGG 0.337519 2.1:+56246643 None:intergenic
ATTGAAGTCAGCATCAAATA+AGG 0.342231 2.1:+56246731 None:intergenic
AAAGGATTTGATTAACTCAT+TGG 0.346872 2.1:-56246915 MS.gene00326:CDS
TTGTTTGCCTAATTCGATAT+TGG 0.351222 2.1:-56247060 MS.gene00326:CDS
AAGATGTTATTCATGCATTT+CGG 0.356695 2.1:-56246760 MS.gene00326:CDS
ATGCACTCCAATATCGAATT+AGG 0.360799 2.1:+56247053 None:intergenic
TCGAAGCCATGTTGAAGAAA+TGG 0.385554 2.1:-56247612 None:intergenic
ATTAGACACAATGAGGTGAT+AGG 0.387819 2.1:+56247018 None:intergenic
AAGTTGACGTCTTTAACAAA+TGG 0.409559 2.1:-56246796 MS.gene00326:CDS
TTTCTTATAGTTTGGAGAAA+AGG 0.411421 2.1:-56246625 MS.gene00326:CDS
AGTTGACGTCTTTAACAAAT+GGG 0.426619 2.1:-56246795 MS.gene00326:CDS
ACCATCTATATTTGGTTCAA+AGG 0.427799 2.1:-56246933 MS.gene00326:CDS
GCAAACAATGACATCCTTGT+TGG 0.429184 2.1:+56247075 None:intergenic
TCAATTGGGTTGGAATTCCT+TGG 0.440659 2.1:-56246672 MS.gene00326:CDS
GAGAAGTGTTGGTTGAAAAG+AGG 0.440691 2.1:+56247523 None:intergenic
TCCTTTGAACCAAATATAGA+TGG 0.443491 2.1:+56246932 None:intergenic
AACTCATTGGAGGAAGTTAA+GGG 0.448139 2.1:-56246902 MS.gene00326:CDS
ATTCCAAAAGTAGTTGTTGA+AGG 0.457781 2.1:+56246866 None:intergenic
AAGCTACTTCGTAAAATTCG+AGG 0.491386 2.1:+56247148 None:intergenic
TAACAGAAGCAGGCTTATCT+GGG 0.497510 2.1:+56247341 None:intergenic
AGAAGTGTTGGTTGAAAAGA+GGG 0.500709 2.1:+56247524 None:intergenic
AGAAGCTTCTGAGTGAAATT+GGG 0.502779 2.1:+56247497 None:intergenic
TTTGGGTCAATCAATTGGGT+TGG 0.506924 2.1:-56246682 MS.gene00326:CDS
AAATTCCGCTAATTAATGAA+TGG 0.519769 2.1:+56246397 None:intergenic
CAAATCTTTCAACTACAAGC+AGG 0.525391 2.1:-56247377 MS.gene00326:CDS
AAGAAGGTGATAACAGAAGC+AGG 0.527708 2.1:+56247331 None:intergenic
ATTGCTTTGATGGCCAAGAA+AGG 0.530580 2.1:-56246845 MS.gene00326:CDS
ATGAGATACGATGCAGCGAA+TGG 0.541068 2.1:+56247433 None:intergenic
TTAGACACAATGAGGTGATA+GGG 0.558479 2.1:+56247019 None:intergenic
TGATTCAGATTCAGATGTTG+TGG 0.559545 2.1:+56247471 None:intergenic
TGACAGTTTGGTAAGTGCCA+AGG 0.560015 2.1:+56246655 None:intergenic
GGATTTGATTAACTCATTGG+AGG 0.570633 2.1:-56246912 MS.gene00326:CDS
AGCTACTTCGTAAAATTCGA+GGG 0.579690 2.1:+56247149 None:intergenic
ACGTCTTTAACAAATGGGGT+TGG 0.597258 2.1:-56246790 MS.gene00326:CDS
CGAGGGTGTGCAGTTAACAA+TGG 0.601489 2.1:+56247166 None:intergenic
TACTTAATAATTCAAAACGA+GGG 0.611412 2.1:+56247110 None:intergenic
AATGAAAATTGCATACACAA+TGG 0.614168 2.1:-56246434 MS.gene00326:CDS
CTACTTAATAATTCAAAACG+AGG 0.615049 2.1:+56247109 None:intergenic
AATTGCATAACTGAGGCCCT+CGG 0.616992 2.1:+56246596 None:intergenic
AAATTGGGAACGAGAAGTGT+TGG 0.618593 2.1:+56247512 None:intergenic
GTTGACGTCTTTAACAAATG+GGG 0.619526 2.1:-56246794 MS.gene00326:CDS
GCATACACAATGGAAAACAA+TGG 0.627199 2.1:-56246424 MS.gene00326:CDS
GGAGAAAAGGATCATTCCGA+GGG 0.628812 2.1:-56246612 MS.gene00326:CDS
TGGAGAAAAGGATCATTCCG+AGG 0.630921 2.1:-56246613 MS.gene00326:CDS
CAAAAGAAATTGCATAACTG+AGG 0.634260 2.1:+56246589 None:intergenic
TAACAATGGAACAATATCAG+AGG 0.642951 2.1:+56247180 None:intergenic
AATTGATATTAGACACAATG+AGG 0.647177 2.1:+56247011 None:intergenic
AACAGAAGCAGGCTTATCTG+GGG 0.702520 2.1:+56247342 None:intergenic
TAGATTCTTGAAAACCAACA+AGG 0.707298 2.1:-56247089 MS.gene00326:CDS
GGTTGGGAAGAAAGTAACCA+AGG 0.719556 2.1:+56247256 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATAGAAAAAATTGAAACTT+TGG + chr2.1:56246799-56246818 None:intergenic 20.0%
!! TACTTAATAATTCAAAACGA+GGG + chr2.1:56246906-56246925 None:intergenic 20.0%
!!! ACAAATGTTTTCTTATAGTT+TGG - chr2.1:56247380-56247399 MS.gene00326:CDS 20.0%
! AAAGGATTTGATTAACTCAT+TGG - chr2.1:56247098-56247117 MS.gene00326:CDS 25.0%
! AAGATGTTATTCATGCATTT+CGG - chr2.1:56247253-56247272 MS.gene00326:CDS 25.0%
! AAGGTATGAGTAAAAAACTT+TGG - chr2.1:56247187-56247206 MS.gene00326:CDS 25.0%
! AATGAAAATTGCATACACAA+TGG - chr2.1:56247579-56247598 MS.gene00326:CDS 25.0%
! AATTGATATTAGACACAATG+AGG + chr2.1:56247005-56247024 None:intergenic 25.0%
! AGGTATGAGTAAAAAACTTT+GGG - chr2.1:56247188-56247207 MS.gene00326:CDS 25.0%
! CTACTTAATAATTCAAAACG+AGG + chr2.1:56246907-56246926 None:intergenic 25.0%
! GATTCCTATAACAACTTTAT+GGG + chr2.1:56246434-56246453 None:intergenic 25.0%
! TGATTCCTATAACAACTTTA+TGG + chr2.1:56246435-56246454 None:intergenic 25.0%
! TTTCTTATAGTTTGGAGAAA+AGG - chr2.1:56247388-56247407 MS.gene00326:CDS 25.0%
!! ATGCAATTTCTTTTGATGAA+AGG - chr2.1:56247432-56247451 MS.gene00326:CDS 25.0%
!! ATTTTCTCAGAATAAGCAAA+TGG + chr2.1:56247489-56247508 None:intergenic 25.0%
!! TCGTATCTCATCAATAATTT+TGG - chr2.1:56246592-56246611 MS.gene00326:CDS 25.0%
!! TGATTCGTTAATGAGTTTTT+GGG - chr2.1:56247314-56247333 MS.gene00326:CDS 25.0%
!! TTTTCCCATAAAGTTGTTAT+AGG - chr2.1:56246427-56246446 MS.gene00326:CDS 25.0%
!!! ACTTTGGTAATAACATTTTG+TGG + chr2.1:56246783-56246802 None:intergenic 25.0%
!!! CAAGTTTGTTTTCAGATTTA+AGG - chr2.1:56247518-56247537 MS.gene00326:CDS 25.0%
!!! CTTTGGTAATAACATTTTGT+GGG + chr2.1:56246782-56246801 None:intergenic 25.0%
!!! TTGATTCGTTAATGAGTTTT+TGG - chr2.1:56247313-56247332 MS.gene00326:CDS 25.0%
!!! TTTGGTAATAACATTTTGTG+GGG + chr2.1:56246781-56246800 None:intergenic 25.0%
!!! TTTTTTACTCATACCTTTCT+TGG + chr2.1:56247184-56247203 None:intergenic 25.0%
AAGTTGACGTCTTTAACAAA+TGG - chr2.1:56247217-56247236 MS.gene00326:CDS 30.0%
AGAAAACATTTGTGACAGTT+TGG + chr2.1:56247373-56247392 None:intergenic 30.0%
AGTTGACGTCTTTAACAAAT+GGG - chr2.1:56247218-56247237 MS.gene00326:CDS 30.0%
ATTCCAAAAGTAGTTGTTGA+AGG + chr2.1:56247150-56247169 None:intergenic 30.0%
ATTGAAGTCAGCATCAAATA+AGG + chr2.1:56247285-56247304 None:intergenic 30.0%
CAAAAGAAATTGCATAACTG+AGG + chr2.1:56247427-56247446 None:intergenic 30.0%
CAAACAAGACCATCTATATT+TGG - chr2.1:56247072-56247091 MS.gene00326:CDS 30.0%
TAACAATGGAACAATATCAG+AGG + chr2.1:56246836-56246855 None:intergenic 30.0%
TAGATTCTTGAAAACCAACA+AGG - chr2.1:56246924-56246943 MS.gene00326:CDS 30.0%
TCCTTTGAACCAAATATAGA+TGG + chr2.1:56247084-56247103 None:intergenic 30.0%
TTGTTTGCCTAATTCGATAT+TGG - chr2.1:56246953-56246972 MS.gene00326:CDS 30.0%
! AAAAGAGGGTTGTTGAATTT+TGG + chr2.1:56246478-56246497 None:intergenic 30.0%
! AAAGAGGGTTGTTGAATTTT+GGG + chr2.1:56246477-56246496 None:intergenic 30.0%
! AAAGATTTGATAGCTGATTC+AGG + chr2.1:56246625-56246644 None:intergenic 30.0%
! ACCATCTATATTTGGTTCAA+AGG - chr2.1:56247080-56247099 MS.gene00326:CDS 30.0%
! TAATAACATTTTGTGGGGTT+GGG + chr2.1:56246776-56246795 None:intergenic 30.0%
!! AAAACCATGGTTTTTGAAGA+AGG + chr2.1:56246701-56246720 None:intergenic 30.0%
!! ATCAATTTGACGACTGATTT+TGG - chr2.1:56247018-56247037 MS.gene00326:CDS 30.0%
!! GTTTGTTTTCAGATTTAAGG+AGG - chr2.1:56247521-56247540 MS.gene00326:CDS 30.0%
!!! AGTTTTTGGGTCAATCAATT+GGG - chr2.1:56247327-56247346 MS.gene00326:CDS 30.0%
!!! TACTTTTGGAATTGCTTTGA+TGG - chr2.1:56247158-56247177 MS.gene00326:CDS 30.0%
AACTCATTGGAGGAAGTTAA+GGG - chr2.1:56247111-56247130 MS.gene00326:CDS 35.0%
AAGCTACTTCGTAAAATTCG+AGG + chr2.1:56246868-56246887 None:intergenic 35.0%
AGAAGCTTCTGAGTGAAATT+GGG + chr2.1:56246519-56246538 None:intergenic 35.0%
AGCTACTTCGTAAAATTCGA+GGG + chr2.1:56246867-56246886 None:intergenic 35.0%
ATCACCTTCTTCAAAAACCA+TGG - chr2.1:56246694-56246713 MS.gene00326:CDS 35.0%
ATCAGAGGAATAAGCATCTT+TGG + chr2.1:56246821-56246840 None:intergenic 35.0%
ATGCACTCCAATATCGAATT+AGG + chr2.1:56246963-56246982 None:intergenic 35.0%
ATTAGACACAATGAGGTGAT+AGG + chr2.1:56246998-56247017 None:intergenic 35.0%
CAAATCTTTCAACTACAAGC+AGG - chr2.1:56246636-56246655 MS.gene00326:CDS 35.0%
GCATACACAATGGAAAACAA+TGG - chr2.1:56247589-56247608 MS.gene00326:CDS 35.0%
GGATTTGATTAACTCATTGG+AGG - chr2.1:56247101-56247120 MS.gene00326:CDS 35.0%
GTTGACGTCTTTAACAAATG+GGG - chr2.1:56247219-56247238 MS.gene00326:CDS 35.0%
TAACTCATTGGAGGAAGTTA+AGG - chr2.1:56247110-56247129 MS.gene00326:CDS 35.0%
TGATTCAGATTCAGATGTTG+TGG + chr2.1:56246545-56246564 None:intergenic 35.0%
TTAGACACAATGAGGTGATA+GGG + chr2.1:56246997-56247016 None:intergenic 35.0%
! AAGAGGGTTGTTGAATTTTG+GGG + chr2.1:56246476-56246495 None:intergenic 35.0%
! CATCCTTCAACAACTACTTT+TGG - chr2.1:56247144-56247163 MS.gene00326:CDS 35.0%
! GTAATAACATTTTGTGGGGT+TGG + chr2.1:56246777-56246796 None:intergenic 35.0%
!! AGAAGTGTTGGTTGAAAAGA+GGG + chr2.1:56246492-56246511 None:intergenic 35.0%
!! TCATCATCAAAAAAGCACCT+TGG - chr2.1:56246740-56246759 MS.gene00326:CDS 35.0%
!!! GAGTTTTTGGGTCAATCAAT+TGG - chr2.1:56247326-56247345 MS.gene00326:CDS 35.0%
AAGAAGGTGATAACAGAAGC+AGG + chr2.1:56246685-56246704 None:intergenic 40.0%
ACGTCTTTAACAAATGGGGT+TGG - chr2.1:56247223-56247242 MS.gene00326:CDS 40.0%
ATAACAGAAGCAGGCTTATC+TGG + chr2.1:56246676-56246695 None:intergenic 40.0%
CAGAAGCTTCTGAGTGAAAT+TGG + chr2.1:56246520-56246539 None:intergenic 40.0%
GCAAACAATGACATCCTTGT+TGG + chr2.1:56246941-56246960 None:intergenic 40.0%
TAACAGAAGCAGGCTTATCT+GGG + chr2.1:56246675-56246694 None:intergenic 40.0%
TGGAGGAAGTTAAGGGTTTA+GGG - chr2.1:56247118-56247137 MS.gene00326:CDS 40.0%
TGTTGTCGTGTGAAAAACCA+TGG + chr2.1:56246714-56246733 None:intergenic 40.0%
TTGGAGGAAGTTAAGGGTTT+AGG - chr2.1:56247117-56247136 MS.gene00326:CDS 40.0%
TTTGGGTCAATCAATTGGGT+TGG - chr2.1:56247331-56247350 MS.gene00326:CDS 40.0%
! AAATTGGGAACGAGAAGTGT+TGG + chr2.1:56246504-56246523 None:intergenic 40.0%
! ATTGCTTTGATGGCCAAGAA+AGG - chr2.1:56247168-56247187 MS.gene00326:CDS 40.0%
!! GAGAAGTGTTGGTTGAAAAG+AGG + chr2.1:56246493-56246512 None:intergenic 40.0%
!! TCAATTGGGTTGGAATTCCT+TGG - chr2.1:56247341-56247360 MS.gene00326:CDS 40.0%
AACAGAAGCAGGCTTATCTG+GGG + chr2.1:56246674-56246693 None:intergenic 45.0%
AATTGCATAACTGAGGCCCT+CGG + chr2.1:56247420-56247439 None:intergenic 45.0%
ATGAGATACGATGCAGCGAA+TGG + chr2.1:56246583-56246602 None:intergenic 45.0%
GGAGAAAAGGATCATTCCGA+GGG - chr2.1:56247401-56247420 MS.gene00326:CDS 45.0%
GGTTGGGAAGAAAGTAACCA+AGG + chr2.1:56246760-56246779 None:intergenic 45.0%
TGACAGTTTGGTAAGTGCCA+AGG + chr2.1:56247361-56247380 None:intergenic 45.0%
TGGAGAAAAGGATCATTCCG+AGG - chr2.1:56247400-56247419 MS.gene00326:CDS 45.0%
! CGAGGGTGTGCAGTTAACAA+TGG + chr2.1:56246850-56246869 None:intergenic 50.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 56246409 56247626 56246409 ID=MS.gene00326
chr2.1 mRNA 56246409 56247626 56246409 ID=MS.gene00326.t1;Parent=MS.gene00326
chr2.1 exon 56246409 56247626 56246409 ID=MS.gene00326.t1.exon1;Parent=MS.gene00326.t1
chr2.1 CDS 56246409 56247626 56246409 ID=cds.MS.gene00326.t1;Parent=MS.gene00326.t1
Gene Sequence

>MS.gene00326

ATGTTGAAGAAATGGTTTTTTTCCCATAAAGTTGTTATAGGAATCATCACAGCAAAATCAACAACCCCAAAATTCAACAACCCTCTTTTCAACCAACACTTCTCGTTCCCAATTTCACTCAGAAGCTTCTGCACCACAACATCTGAATCTGAATCAGAATCAGTCACAAATCCATTCGCTGCATCGTATCTCATCAATAATTTTGGTTTCACTCCTGAATCAGCTATCAAATCTTTCAACTACAAGCAGGTTCGTTTCAATACCCCAGATAAGCCTGCTTCTGTTATCACCTTCTTCAAAAACCATGGTTTTTCACACGACAACATACGCATCATCATCAAAAAAGCACCTTGGTTACTTTCTTCCCAACCCCACAAAATGTTATTACCAAAGTTTCAATTTTTTCTATCCAAAGATGCTTATTCCTCTGATATTGTTCCATTGTTAACTGCACACCCTCGAATTTTACGAAGTAGCTTGAAGAAACTAATAATCCCTCGTTTTGAATTATTAAGTAGATTCTTGAAAACCAACAAGGATGTCATTGTTTGCCTAATTCGATATTGGAGTGCATTTTCTACTAATCCCTATCACCTCATTGTGTCTAATATCAATTTGACGACTGATTTTGGAGTTTCTGATTCTATCATCGCTAATTTGCTTCAAACAAGACCATCTATATTTGGTTCAAAGGATTTGATTAACTCATTGGAGGAAGTTAAGGGTTTAGGGTTTCATCCTTCAACAACTACTTTTGGAATTGCTTTGATGGCCAAGAAAGGTATGAGTAAAAAACTTTGGGATGAGAAAGTTGACGTCTTTAACAAATGGGGTTGGTCTGATGAAGATGTTATTCATGCATTTCGGATGCAGCCTTATTTGATGCTGACTTCAATTGATAAGATTGATTCGTTAATGAGTTTTTGGGTCAATCAATTGGGTTGGAATTCCTTGGCACTTACCAAACTGTCACAAATGTTTTCTTATAGTTTGGAGAAAAGGATCATTCCGAGGGCCTCAGTTATGCAATTTCTTTTGATGAAAGGTTTGCGAGAAAAGAATGCAAGCTTAGTTGCACCATTTGCTTATTCTGAGAAAATATTCTTAAGCAAGTTTGTTTTCAGATTTAAGGAGGAGTCTGATTATCTATTAAAGCTATATGAGAGAAAAAATGAAAATTGCATACACAATGGAAAACAATGGCATGCCATTCATTAA
Protein sequence

>MS.gene00326.t1

MLKKWFFSHKVVIGIITAKSTTPKFNNPLFNQHFSFPISLRSFCTTTSESESESVTNPFAASYLINNFGFTPESAIKSFNYKQVRFNTPDKPASVITFFKNHGFSHDNIRIIIKKAPWLLSSQPHKMLLPKFQFFLSKDAYSSDIVPLLTAHPRILRSSLKKLIIPRFELLSRFLKTNKDVIVCLIRYWSAFSTNPYHLIVSNINLTTDFGVSDSIIANLLQTRPSIFGSKDLINSLEEVKGLGFHPSTTTFGIALMAKKGMSKKLWDEKVDVFNKWGWSDEDVIHAFRMQPYLMLTSIDKIDSLMSFWVNQLGWNSLALTKLSQMFSYSLEKRIIPRASVMQFLLMKGLREKNASLVAPFAYSEKIFLSKFVFRFKEESDYLLKLYERKNENCIHNGKQWHAIH