AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene58656

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene58656.t1 MTR_2g437990 86.600 403 52 2 1 402 1 402 0.0 704
MS.gene58656.t1 MTR_2g076320 84.864 403 60 1 1 402 1 403 0.0 683
MS.gene58656.t1 MTR_2g438010 78.908 403 84 1 1 402 21 423 0.0 644
MS.gene58656.t1 MTR_2g437120 78.697 399 76 3 1 394 1 395 0.0 619
MS.gene58656.t1 MTR_2g437150 72.840 405 102 3 1 397 1 405 0.0 583
MS.gene58656.t1 MTR_2g437170 72.683 410 102 4 1 400 1 410 0.0 581
MS.gene58656.t1 MTR_2g437940 74.447 407 66 4 1 402 1 374 0.0 581
MS.gene58656.t1 MTR_2g437960 70.370 405 116 2 1 401 1 405 0.0 562
MS.gene58656.t1 MTR_2g437960 70.471 403 115 2 1 399 1 403 0.0 560
MS.gene58656.t1 MTR_2g437160 70.175 399 113 4 1 395 12 408 0.0 556
MS.gene58656.t1 MTR_2g437180 68.905 402 113 3 1 397 1 395 0.0 533
MS.gene58656.t1 MTR_2g437100 69.689 386 110 2 4 382 10 395 0.0 524
MS.gene58656.t1 MTR_2g437200 64.935 385 96 3 33 382 18 398 1.31e-166 473
MS.gene58656.t1 MTR_2g437240 61.954 389 111 2 48 401 31 417 4.94e-162 462
MS.gene58656.t1 MTR_2g438020 62.274 387 108 3 48 399 70 453 1.34e-161 463
MS.gene58656.t1 MTR_2g437130 63.315 368 126 3 31 398 29 387 2.71e-158 451
MS.gene58656.t1 MTR_2g436440 53.134 367 165 2 28 394 29 388 6.68e-129 376
MS.gene58656.t1 MTR_2g437080 52.210 362 166 2 31 392 26 380 2.67e-127 372
MS.gene58656.t1 MTR_2g437020 53.552 366 160 4 27 390 21 378 3.45e-126 369
MS.gene58656.t1 MTR_2g437060 50.964 363 171 2 28 390 38 393 8.75e-120 353
MS.gene58656.t1 MTR_2g437040 51.515 363 169 2 32 394 27 382 2.89e-119 352
MS.gene58656.t1 MTR_2g437030 49.724 362 175 2 33 394 114 468 2.11e-114 342
MS.gene58656.t1 MTR_2g436400 49.133 346 169 2 41 386 43 381 5.79e-111 330
MS.gene58656.t1 MTR_2g436460 51.862 349 158 6 38 385 40 379 5.71e-107 320
MS.gene58656.t1 MTR_2g437260 46.389 360 184 5 30 387 19 371 3.11e-106 319
MS.gene58656.t1 MTR_4g119550 45.402 348 184 3 44 390 46 388 4.02e-105 316
MS.gene58656.t1 MTR_4g120380 48.246 342 164 3 42 379 37 369 1.03e-101 306
MS.gene58656.t1 MTR_4g119580 46.512 344 171 3 40 379 35 369 5.89e-98 297
MS.gene58656.t1 MTR_4g120380 48.916 323 152 3 42 360 37 350 6.96e-97 296
MS.gene58656.t1 MTR_2g437160 58.723 235 85 3 165 395 91 317 8.95e-90 274
MS.gene58656.t1 MTR_2g437160 47.826 253 93 10 1 231 12 247 5.95e-52 176
MS.gene58656.t1 MTR_2g019840 40.779 385 193 9 22 387 8 376 1.17e-82 258
MS.gene58656.t1 MTR_2g019810 44.179 335 176 6 51 382 33 359 7.74e-80 250
MS.gene58656.t1 MTR_2g437090 53.801 171 79 0 225 395 1 171 3.25e-60 193
MS.gene58656.t1 MTR_3g450500 30.769 364 242 4 24 379 8 369 2.24e-51 176
MS.gene58656.t1 MTR_4g119570 38.800 250 117 2 129 378 14 227 3.33e-48 164
MS.gene58656.t1 MTR_4g007490 29.600 375 249 7 10 379 3 367 1.38e-45 161
MS.gene58656.t1 MTR_4g049400 54.000 150 68 1 1 149 1 150 1.19e-43 152
MS.gene58656.t1 MTR_2g436370 48.936 141 70 1 41 181 40 178 4.50e-37 134
MS.gene58656.t1 MTR_8g081000 28.146 302 213 2 80 379 85 384 9.29e-32 124
MS.gene58656.t1 MTR_8g081000 28.146 302 213 2 80 379 85 384 9.97e-32 124
MS.gene58656.t1 MTR_8g081000 26.687 326 234 3 80 402 85 408 1.08e-31 124
MS.gene58656.t1 MTR_8g080990 28.523 298 209 3 81 376 73 368 1.04e-29 118
MS.gene58656.t1 MTR_3g085240 55.556 90 23 1 284 373 176 248 3.44e-22 95.1
MS.gene58656.t1 MTR_3g085240 43.243 148 65 7 28 172 40 171 1.59e-19 87.8
MS.gene58656.t1 MTR_2g436380 55.000 60 27 0 225 284 1 60 1.01e-15 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene58656.t1 AT5G07900 32.831 332 218 4 51 379 70 399 1.80e-54 186
MS.gene58656.t1 AT1G21150 29.870 385 254 6 5 377 4 384 1.36e-51 177
MS.gene58656.t1 AT1G21150 29.870 385 254 6 5 377 68 448 7.02e-51 177
MS.gene58656.t1 AT1G21150 30.793 328 222 3 53 377 23 348 2.73e-49 171
MS.gene58656.t1 AT1G61980 28.889 360 198 8 51 365 53 399 6.99e-36 136
MS.gene58656.t1 AT1G61980 28.889 360 198 8 51 365 53 399 6.99e-36 136
MS.gene58656.t1 AT1G61980 28.889 360 198 8 51 365 53 399 6.99e-36 136
MS.gene58656.t1 AT1G61990 29.076 368 210 7 51 379 53 408 1.72e-33 129
MS.gene58656.t1 AT1G61990 29.076 368 210 7 51 379 53 408 1.72e-33 129
MS.gene58656.t1 AT1G61970 27.171 357 208 8 51 365 53 399 5.36e-33 128
MS.gene58656.t1 AT1G61970 27.171 357 208 8 51 365 53 399 5.36e-33 128
MS.gene58656.t1 AT1G61970 27.171 357 208 8 51 365 53 399 5.36e-33 128
MS.gene58656.t1 AT1G61970 27.171 357 208 8 51 365 53 399 5.36e-33 128
MS.gene58656.t1 AT1G61970 27.171 357 208 8 51 365 53 399 5.36e-33 128
MS.gene58656.t1 AT1G61970 27.171 357 208 8 51 365 53 399 5.36e-33 128
MS.gene58656.t1 AT1G61970 27.171 357 208 8 51 365 53 399 5.36e-33 128
MS.gene58656.t1 AT5G64950 28.610 374 256 7 15 379 4 375 2.02e-29 118
MS.gene58656.t1 AT3G46950 28.044 271 183 4 30 297 30 291 9.52e-26 108
MS.gene58656.t1 AT1G61960 30.556 252 156 4 51 294 53 293 1.19e-25 108
MS.gene58656.t1 AT1G62120 27.052 329 199 7 51 342 57 381 2.46e-25 107
MS.gene58656.t1 AT1G62085 29.249 253 159 4 51 294 56 297 1.11e-22 99.8
MS.gene58656.t1 AT1G62085 29.249 253 159 4 51 294 56 297 1.11e-22 99.8
MS.gene58656.t1 AT1G62110 28.346 254 162 4 51 295 53 295 2.77e-22 98.6
MS.gene58656.t1 AT1G62150 28.016 257 157 6 51 294 59 300 7.35e-21 94.7
MS.gene58656.t1 AT5G23930 22.670 397 219 10 23 342 23 408 1.22e-20 94.0
MS.gene58656.t1 AT1G62010 23.856 306 184 5 77 342 63 359 6.88e-19 88.2

Find 65 sgRNAs with CRISPR-Local

Find 90 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTACCTTATCAACAATTT+TGG 0.063826 2.3:-53699345 MS.gene58656:CDS
ATCAATTTGATGTCTGATTT+TGG 0.116384 2.3:-53698919 MS.gene58656:CDS
TTTCTTATAGTTTACCTAAA+AGG 0.248707 2.3:-53698549 MS.gene58656:CDS
TTGGAGGAAGTTAAGTGTTT+AGG 0.257551 2.3:-53698820 MS.gene58656:CDS
TGGAGGAAGTTAAGTGTTTA+GGG 0.262883 2.3:-53698819 MS.gene58656:CDS
ATAACTGAATCAGGATTATC+TGG 0.267810 2.3:+53699264 None:intergenic
ATGCTGCATTTGAGTGAAAA+TGG 0.281235 2.3:+53699411 None:intergenic
AAGCTGTTATTCGAGTATTT+AGG 0.318007 2.3:-53698684 MS.gene58656:CDS
AGTTGATGTCTTTAAGAAAT+GGG 0.334222 2.3:-53698719 MS.gene58656:CDS
AAGAAGGTTATAACTGAATC+AGG 0.337201 2.3:+53699255 None:intergenic
TGAGACATAAAACAAGATTC+TGG 0.344142 2.3:+53699481 None:intergenic
AAATGATTTGATTAAGTCAT+TGG 0.345760 2.3:-53698839 MS.gene58656:CDS
TTGCTAGACTGCTTCTTAGA+AGG 0.348343 2.3:-53698879 MS.gene58656:CDS
AAGTTGATGTCTTTAAGAAA+TGG 0.356329 2.3:-53698720 MS.gene58656:CDS
AAAACCCAAAATTGTTGATA+AGG 0.368297 2.3:+53699340 None:intergenic
AATGTATGAGTAAAATACTT+TGG 0.370949 2.3:-53698750 MS.gene58656:CDS
GATAGAAAATATTCAAACTT+TGG 0.371358 2.3:+53699141 None:intergenic
TTCAATTGATAAGATTAATC+TGG 0.385597 2.3:-53698638 MS.gene58656:CDS
TATTGCAAAATTGAGGCTCT+TGG 0.390283 2.3:+53698520 None:intergenic
ATCAGAGGAAGAAGCACCTT+TGG 0.406640 2.3:+53699119 None:intergenic
AAACTACTTTGTAAAATTTG+AGG 0.407296 2.3:+53699072 None:intergenic
AACTACTTTGTAAAATTTGA+GGG 0.411226 2.3:+53699073 None:intergenic
TTGGGTTAATCAAATGGGTT+GGG 0.420431 2.3:-53698605 MS.gene58656:CDS
TCATTTGAACAAAATATAGA+TGG 0.424258 2.3:+53698856 None:intergenic
GCAAACAATGGTATCCTTGT+CGG 0.427133 2.3:+53698999 None:intergenic
AGATCAATACATTACACATT+TGG 0.428401 2.3:+53698315 None:intergenic
ATGTATGAGTAAAATACTTT+GGG 0.434480 2.3:-53698749 MS.gene58656:CDS
GTCCGAAAAGCGGTTGTTGA+AGG 0.442684 2.3:+53698790 None:intergenic
TCAAATGGGTTGGGATCCCT+TGG 0.453367 2.3:-53698596 MS.gene58656:CDS
TTTGGGTTAATCAAATGGGT+TGG 0.454317 2.3:-53698606 MS.gene58656:CDS
CAAATACAACGGAGAACAAT+GGG 0.473276 2.3:-53698348 MS.gene58656:CDS
TTTCATCACAACCCCACAAA+AGG 0.473339 2.3:-53699170 MS.gene58656:CDS
GAGACATAAAACAAGATTCT+GGG 0.480009 2.3:+53699482 None:intergenic
TCAATACATTACACATTTGG+TGG 0.494508 2.3:+53698318 None:intergenic
GTTGATGTCTTTAAGAAATG+GGG 0.513781 2.3:-53698718 MS.gene58656:CDS
AAACTATAAGAAAACATAAG+TGG 0.525922 2.3:+53698559 None:intergenic
ATTAGCCTCTAGAACATGAT+GGG 0.526186 2.3:+53698942 None:intergenic
TACATTACACATTTGGTGGA+TGG 0.530490 2.3:+53698322 None:intergenic
CAAAAGATATTGCAAAATTG+AGG 0.532650 2.3:+53698513 None:intergenic
CAAAGCTTTCAACAACAAGC+AGG 0.537532 2.3:-53699301 MS.gene58656:CDS
TGCTGCATTTGAGTGAAAAT+GGG 0.540143 2.3:+53699412 None:intergenic
CCCAAAATTGTTGATAAGGT+AGG 0.546179 2.3:+53699344 None:intergenic
ATATTCTCAGAATAAGCAAA+TGG 0.549537 2.3:+53698451 None:intergenic
TATTAGCCTCTAGAACATGA+TGG 0.549790 2.3:+53698941 None:intergenic
ATAACCTTCTTTCAAAACCA+TGG 0.550615 2.3:-53699243 MS.gene58656:CDS
ATAAGGTAGGATACAGCAAA+AGG 0.553742 2.3:+53699357 None:intergenic
TGATTTGATTAAGTCATTGG+AGG 0.568604 2.3:-53698836 MS.gene58656:CDS
TCCGAAAAGCGGTTGTTGAA+GGG 0.570224 2.3:+53698791 None:intergenic
TGGAGATTTAGTAAGTTCCA+AGG 0.571492 2.3:+53698579 None:intergenic
ATTGAAGTCAACATCAAACT+AGG 0.571733 2.3:+53698655 None:intergenic
GCAAATACAACGGAGAACAA+TGG 0.572984 2.3:-53698349 MS.gene58656:CDS
TAACTGAATCAGGATTATCT+GGG 0.587224 2.3:+53699265 None:intergenic
TTATCCCCATCATGTTCTAG+AGG 0.591171 2.3:-53698947 MS.gene58656:CDS
ATTTCGAATTAAGCAAACAA+TGG 0.591852 2.3:+53698987 None:intergenic
ATGTCTTTAAGAAATGGGGT+TGG 0.604281 2.3:-53698714 MS.gene58656:CDS
GGAGATTTAGTAAGTTCCAA+GGG 0.618354 2.3:+53698580 None:intergenic
TAACAATGAAACAATATCAG+AGG 0.619380 2.3:+53699104 None:intergenic
TCTAAGAAGCAGTCTAGCAA+TGG 0.630562 2.3:+53698882 None:intergenic
TCATCATCACAAAAGCACCT+TGG 0.652829 2.3:-53699197 MS.gene58656:CDS
AATGAAACTTGCAAATACAA+CGG 0.655557 2.3:-53698359 MS.gene58656:CDS
AACTGAATCAGGATTATCTG+GGG 0.671908 2.3:+53699266 None:intergenic
TTAGCCTCTAGAACATGATG+GGG 0.688598 2.3:+53698943 None:intergenic
GTGAAAATGGGAATGACAAG+TGG 0.688711 2.3:+53699424 None:intergenic
TATCAAAGCAGTCCGAAAAG+CGG 0.690793 2.3:+53698780 None:intergenic
GGTTGTGATGAAAGTAACCA+AGG 0.737190 2.3:+53699180 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACTACTTTGTAAAATTTG+AGG + chr2.3:53698753-53698772 None:intergenic 20.0%
!! AAACTATAAGAAAACATAAG+TGG + chr2.3:53699266-53699285 None:intergenic 20.0%
!! AAATGATTTGATTAAGTCAT+TGG - chr2.3:53698983-53699002 MS.gene58656:CDS 20.0%
!! AACTACTTTGTAAAATTTGA+GGG + chr2.3:53698752-53698771 None:intergenic 20.0%
!! AATGTATGAGTAAAATACTT+TGG - chr2.3:53699072-53699091 MS.gene58656:CDS 20.0%
!! ATGTATGAGTAAAATACTTT+GGG - chr2.3:53699073-53699092 MS.gene58656:CDS 20.0%
!! GATAGAAAATATTCAAACTT+TGG + chr2.3:53698684-53698703 None:intergenic 20.0%
!! TCATTTGAACAAAATATAGA+TGG + chr2.3:53698969-53698988 None:intergenic 20.0%
!! TTCAATTGATAAGATTAATC+TGG - chr2.3:53699184-53699203 MS.gene58656:CDS 20.0%
!! TTTCTTATAGTTTACCTAAA+AGG - chr2.3:53699273-53699292 MS.gene58656:CDS 20.0%
!!! AATTTTTGGGTTAATCAAAT+GGG - chr2.3:53699212-53699231 MS.gene58656:CDS 20.0%
!!! TATTTTACTCATACATTTCT+TGG + chr2.3:53699069-53699088 None:intergenic 20.0%
!!! TCAAATTTTACAAAGTAGTT+TGG - chr2.3:53698752-53698771 MS.gene58656:CDS 20.0%
!!! TTTGAATATTTTCTATCCAA+AGG - chr2.3:53698687-53698706 MS.gene58656:CDS 20.0%
! AAAACCCAAAATTGTTGATA+AGG + chr2.3:53698485-53698504 None:intergenic 25.0%
! AATGAAACTTGCAAATACAA+CGG - chr2.3:53699463-53699482 MS.gene58656:CDS 25.0%
! ATATTCTCAGAATAAGCAAA+TGG + chr2.3:53699374-53699393 None:intergenic 25.0%
! ATTTCGAATTAAGCAAACAA+TGG + chr2.3:53698838-53698857 None:intergenic 25.0%
! CAAAAGATATTGCAAAATTG+AGG + chr2.3:53699312-53699331 None:intergenic 25.0%
! TAACAATGAAACAATATCAG+AGG + chr2.3:53698721-53698740 None:intergenic 25.0%
! TATTCAGCAATTCAAAAAGA+GGG + chr2.3:53698791-53698810 None:intergenic 25.0%
!! AGTTGATGTCTTTAAGAAAT+GGG - chr2.3:53699103-53699122 MS.gene58656:CDS 25.0%
!! ATCAATTTGATGTCTGATTT+TGG - chr2.3:53698903-53698922 MS.gene58656:CDS 25.0%
!! TTGCAATATCTTTTGATGAA+AGG - chr2.3:53699317-53699336 MS.gene58656:CDS 25.0%
!!! AAGTTGATGTCTTTAAGAAA+TGG - chr2.3:53699102-53699121 MS.gene58656:CDS 25.0%
!!! GAATTTTTGGGTTAATCAAA+TGG - chr2.3:53699211-53699230 MS.gene58656:CDS 25.0%
!!! TAATCTGGTGATGAATTTTT+GGG - chr2.3:53699199-53699218 MS.gene58656:CDS 25.0%
!!! TTAATCTGGTGATGAATTTT+TGG - chr2.3:53699198-53699217 MS.gene58656:CDS 25.0%
AAGAAGGTTATAACTGAATC+AGG + chr2.3:53698570-53698589 None:intergenic 30.0%
AAGCTGTTATTCGAGTATTT+AGG - chr2.3:53699138-53699157 MS.gene58656:CDS 30.0%
ATAACCTTCTTTCAAAACCA+TGG - chr2.3:53698579-53698598 MS.gene58656:CDS 30.0%
ATAACTGAATCAGGATTATC+TGG + chr2.3:53698561-53698580 None:intergenic 30.0%
ATTGAAGTCAACATCAAACT+AGG + chr2.3:53699170-53699189 None:intergenic 30.0%
CTATTCAGCAATTCAAAAAG+AGG + chr2.3:53698792-53698811 None:intergenic 30.0%
GAGACATAAAACAAGATTCT+GGG + chr2.3:53698343-53698362 None:intergenic 30.0%
TAACTGAATCAGGATTATCT+GGG + chr2.3:53698560-53698579 None:intergenic 30.0%
TCAATACATTACACATTTGG+TGG + chr2.3:53699507-53699526 None:intergenic 30.0%
TGAGACATAAAACAAGATTC+TGG + chr2.3:53698344-53698363 None:intergenic 30.0%
TGATTTGATTAAGTCATTGG+AGG - chr2.3:53698986-53699005 MS.gene58656:CDS 30.0%
! ATCTTTTGATGAAAGGTTTG+CGG - chr2.3:53699324-53699343 MS.gene58656:CDS 30.0%
! CAAGTGGTTGTTGAATTTTA+AGG + chr2.3:53698385-53698404 None:intergenic 30.0%
! CCTACCTTATCAACAATTTT+GGG - chr2.3:53698478-53698497 MS.gene58656:CDS 30.0%
! CTCTTTTTGAATTGCTGAAT+AGG - chr2.3:53698790-53698809 MS.gene58656:CDS 30.0%
! GTTGATGTCTTTAAGAAATG+GGG - chr2.3:53699104-53699123 MS.gene58656:CDS 30.0%
! TCCTACCTTATCAACAATTT+TGG - chr2.3:53698477-53698496 MS.gene58656:CDS 30.0%
!!! AAAACCATGGTTTTGAAAGA+AGG + chr2.3:53698586-53698605 None:intergenic 30.0%
AACTGAATCAGGATTATCTG+GGG + chr2.3:53698559-53698578 None:intergenic 35.0%
ATAAGGTAGGATACAGCAAA+AGG + chr2.3:53698468-53698487 None:intergenic 35.0%
ATGCTGCATTTGAGTGAAAA+TGG + chr2.3:53698414-53698433 None:intergenic 35.0%
CAAATACAACGGAGAACAAT+GGG - chr2.3:53699474-53699493 MS.gene58656:CDS 35.0%
CTGGGAGAAAAACAATTTGT+TGG + chr2.3:53698325-53698344 None:intergenic 35.0%
GGAGATTTAGTAAGTTCCAA+GGG + chr2.3:53699245-53699264 None:intergenic 35.0%
TATTGCAAAATTGAGGCTCT+TGG + chr2.3:53699305-53699324 None:intergenic 35.0%
TGCTGCATTTGAGTGAAAAT+GGG + chr2.3:53698413-53698432 None:intergenic 35.0%
TGGAGATTTAGTAAGTTCCA+AGG + chr2.3:53699246-53699265 None:intergenic 35.0%
TGGAGGAAGTTAAGTGTTTA+GGG - chr2.3:53699003-53699022 MS.gene58656:CDS 35.0%
TGTTATCGTGTGAAAAACCA+TGG + chr2.3:53698599-53698618 None:intergenic 35.0%
TTGGAGGAAGTTAAGTGTTT+AGG - chr2.3:53699002-53699021 MS.gene58656:CDS 35.0%
! ATGTCTTTAAGAAATGGGGT+TGG - chr2.3:53699108-53699127 MS.gene58656:CDS 35.0%
! CAAGTGTGTTTTCAGCTTTA+AGG - chr2.3:53699403-53699422 MS.gene58656:CDS 35.0%
! CCCAAAATTGTTGATAAGGT+AGG + chr2.3:53698481-53698500 None:intergenic 35.0%
! TACATTACACATTTGGTGGA+TGG + chr2.3:53699503-53699522 None:intergenic 35.0%
! TTGGGTTAATCAAATGGGTT+GGG - chr2.3:53699217-53699236 MS.gene58656:CDS 35.0%
! TTTGGGTTAATCAAATGGGT+TGG - chr2.3:53699216-53699235 MS.gene58656:CDS 35.0%
!! ATTAGCCTCTAGAACATGAT+GGG + chr2.3:53698883-53698902 None:intergenic 35.0%
!! TATTAGCCTCTAGAACATGA+TGG + chr2.3:53698884-53698903 None:intergenic 35.0%
CAAAGCTTTCAACAACAAGC+AGG - chr2.3:53698521-53698540 MS.gene58656:CDS 40.0%
CGGAAAAAAAATGCGAGCTT+AGG - chr2.3:53699344-53699363 MS.gene58656:CDS 40.0%
GCAAACAATGGTATCCTTGT+CGG + chr2.3:53698826-53698845 None:intergenic 40.0%
GCAAATACAACGGAGAACAA+TGG - chr2.3:53699473-53699492 MS.gene58656:CDS 40.0%
GGTTGTGATGAAAGTAACCA+AGG + chr2.3:53698645-53698664 None:intergenic 40.0%
GTGAAAATGGGAATGACAAG+TGG + chr2.3:53698401-53698420 None:intergenic 40.0%
TATCAAAGCAGTCCGAAAAG+CGG + chr2.3:53699045-53699064 None:intergenic 40.0%
TCTAAGAAGCAGTCTAGCAA+TGG + chr2.3:53698943-53698962 None:intergenic 40.0%
TTATCCCCATCATGTTCTAG+AGG - chr2.3:53698875-53698894 MS.gene58656:CDS 40.0%
TTGCTAGACTGCTTCTTAGA+AGG - chr2.3:53698943-53698962 MS.gene58656:CDS 40.0%
TTTCATCACAACCCCACAAA+AGG - chr2.3:53698652-53698671 MS.gene58656:CDS 40.0%
! ACTTTGGCAACAACCTTTTG+TGG + chr2.3:53698668-53698687 None:intergenic 40.0%
! CTTTGGCAACAACCTTTTGT+GGG + chr2.3:53698667-53698686 None:intergenic 40.0%
! GCTCTTGGAATGATCCTTTT+AGG + chr2.3:53699290-53699309 None:intergenic 40.0%
! TAGGTTTTCGAAAACCGACA+AGG - chr2.3:53698809-53698828 MS.gene58656:CDS 40.0%
! TTTGGCAACAACCTTTTGTG+GGG + chr2.3:53698666-53698685 None:intergenic 40.0%
!! TCATCATCACAAAAGCACCT+TGG - chr2.3:53698625-53698644 MS.gene58656:CDS 40.0%
!! TTAGCCTCTAGAACATGATG+GGG + chr2.3:53698882-53698901 None:intergenic 40.0%
!!! GTGTGTTTTCAGCTTTAAGG+AGG - chr2.3:53699406-53699425 MS.gene58656:CDS 40.0%
TCCGAAAAGCGGTTGTTGAA+GGG + chr2.3:53699034-53699053 None:intergenic 45.0%
!! ACCCTTCAACAACCGCTTTT+CGG - chr2.3:53699030-53699049 MS.gene58656:CDS 45.0%
!! ATCAGAGGAAGAAGCACCTT+TGG + chr2.3:53698706-53698725 None:intergenic 45.0%
GTCCGAAAAGCGGTTGTTGA+AGG + chr2.3:53699035-53699054 None:intergenic 50.0%
!! TCAAATGGGTTGGGATCCCT+TGG - chr2.3:53699226-53699245 MS.gene58656:CDS 50.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 53698318 53699526 53698318 ID=MS.gene58656
chr2.3 mRNA 53698318 53699526 53698318 ID=MS.gene58656.t1;Parent=MS.gene58656
chr2.3 exon 53698318 53699526 53698318 ID=MS.gene58656.t1.exon1;Parent=MS.gene58656.t1
chr2.3 CDS 53698318 53699526 53698318 ID=cds.MS.gene58656.t1;Parent=MS.gene58656.t1
Gene Sequence

>MS.gene58656

ATGTCCAACAAATTGTTTTTCTCCCAGAATCTTGTTTTATGTCTCATCACAACAAAATCAACAACCTTAAAATTCAACAACCACTTGTCATTCCCATTTTCACTCAAATGCAGCATCACAACATCTCAATCAGAATCAATCACACAACCTTTTGCTGTATCCTACCTTATCAACAATTTTGGGTTTTCAACTGAATCAGCTCTCAAAGCTTTCAACAACAAGCAGGTTCGTTTCAATACCCCAGATAATCCTGATTCAGTTATAACCTTCTTTCAAAACCATGGTTTTTCACACGATAACATACGCATCATCATCACAAAAGCACCTTGGTTACTTTCATCACAACCCCACAAAAGGTTGTTGCCAAAGTTTGAATATTTTCTATCCAAAGGTGCTTCTTCCTCTGATATTGTTTCATTGTTAACTTCAAACCCTCAAATTTTACAAAGTAGTTTGGAGAAAAGAATAATCCCTCTTTTTGAATTGCTGAATAGGTTTTCGAAAACCGACAAGGATACCATTGTTTGCTTAATTCGAAATTCAAGATCATTTACTGTTTATCCCCATCATGTTCTAGAGGCTAATATCAATTTGATGTCTGATTTTGGAGTTTCTGATTCTGCCATTGCTAGACTGCTTCTTAGAAGGCCATCTATATTTTGTTCAAATGATTTGATTAAGTCATTGGAGGAAGTTAAGTGTTTAGGGTTTGACCCTTCAACAACCGCTTTTCGGACTGCTTTGATAGCCAAGAAATGTATGAGTAAAATACTTTGGGATAAGAAAGTTGATGTCTTTAAGAAATGGGGTTGGTCTGATGAAGCTGTTATTCGAGTATTTAGGTGTCAGCCTAGTTTGATGTTGACTTCAATTGATAAGATTAATCTGGTGATGAATTTTTGGGTTAATCAAATGGGTTGGGATCCCTTGGAACTTACTAAATCTCCACTTATGTTTTCTTATAGTTTACCTAAAAGGATCATTCCAAGAGCCTCAATTTTGCAATATCTTTTGATGAAAGGTTTGCGGAAAAAAAATGCGAGCTTAGGTAGACCATTTGCTTATTCTGAGAATATGTTCTTGAACAAGTGTGTTTTCAGCTTTAAGGAGGAGTCTGATTATCTGTTGAAGCTATATGACGAAAAAATGAAACTTGCAAATACAACGGAGAACAATGGGATGCCATCCACCAAATGTGTAATGTATTGA
Protein sequence

>MS.gene58656.t1

MSNKLFFSQNLVLCLITTKSTTLKFNNHLSFPFSLKCSITTSQSESITQPFAVSYLINNFGFSTESALKAFNNKQVRFNTPDNPDSVITFFQNHGFSHDNIRIIITKAPWLLSSQPHKRLLPKFEYFLSKGASSSDIVSLLTSNPQILQSSLEKRIIPLFELLNRFSKTDKDTIVCLIRNSRSFTVYPHHVLEANINLMSDFGVSDSAIARLLLRRPSIFCSNDLIKSLEEVKCLGFDPSTTAFRTALIAKKCMSKILWDKKVDVFKKWGWSDEAVIRVFRCQPSLMLTSIDKINLVMNFWVNQMGWDPLELTKSPLMFSYSLPKRIIPRASILQYLLMKGLRKKNASLGRPFAYSENMFLNKCVFSFKEESDYLLKLYDEKMKLANTTENNGMPSTKCVMY