AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene073433

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene073433.t1 MTR_2g437200 62.963 405 115 7 1 394 1 381 7.78e-158 454
MS.gene073433.t1 MTR_2g437200 79.245 106 22 0 390 495 225 330 3.17e-51 179
MS.gene073433.t1 MTR_2g437240 60.705 397 137 5 1 394 1 381 3.15e-151 439
MS.gene073433.t1 MTR_2g437240 65.094 106 37 0 390 495 225 330 9.39e-40 149
MS.gene073433.t1 MTR_2g438020 79.026 267 56 0 29 295 70 336 2.55e-145 426
MS.gene073433.t1 MTR_2g438020 71.028 107 31 0 390 496 264 370 1.65e-45 166
MS.gene073433.t1 MTR_2g437960 52.139 374 113 6 30 394 53 369 3.12e-110 333
MS.gene073433.t1 MTR_2g437960 73.585 106 28 0 390 495 213 318 2.54e-45 164
MS.gene073433.t1 MTR_2g437960 52.139 374 113 6 30 394 53 369 5.21e-110 333
MS.gene073433.t1 MTR_2g437960 73.585 106 28 0 390 495 213 318 3.88e-45 164
MS.gene073433.t1 MTR_2g437120 50.653 383 129 10 16 392 36 364 1.33e-102 314
MS.gene073433.t1 MTR_2g437120 73.585 106 27 1 390 495 211 315 7.15e-43 157
MS.gene073433.t1 MTR_2g437170 48.593 391 125 9 21 394 42 373 2.80e-102 313
MS.gene073433.t1 MTR_2g437170 71.698 106 30 0 390 495 217 322 7.62e-46 166
MS.gene073433.t1 MTR_2g437150 48.082 391 127 9 21 394 42 373 9.89e-101 309
MS.gene073433.t1 MTR_2g437150 71.698 106 30 0 390 495 217 322 7.66e-46 165
MS.gene073433.t1 MTR_2g437180 47.781 383 132 6 21 394 42 365 3.57e-100 307
MS.gene073433.t1 MTR_2g437180 66.038 106 36 0 390 495 209 314 2.00e-40 150
MS.gene073433.t1 MTR_2g437100 47.059 391 149 8 11 394 39 378 1.08e-97 301
MS.gene073433.t1 MTR_2g437100 66.981 106 35 0 390 495 222 327 1.46e-39 148
MS.gene073433.t1 MTR_2g437160 47.028 387 134 7 21 394 50 378 1.03e-96 299
MS.gene073433.t1 MTR_2g437160 69.811 106 32 0 390 495 222 327 3.22e-45 164
MS.gene073433.t1 MTR_2g437990 46.475 383 126 8 25 392 45 363 1.18e-93 291
MS.gene073433.t1 MTR_2g437990 69.811 106 32 0 390 495 209 314 1.84e-45 165
MS.gene073433.t1 MTR_2g076320 46.825 378 133 7 25 392 45 364 1.79e-93 290
MS.gene073433.t1 MTR_2g076320 67.925 106 34 0 390 495 210 315 3.50e-44 160
MS.gene073433.t1 MTR_2g438010 44.000 375 144 6 27 392 67 384 4.91e-91 285
MS.gene073433.t1 MTR_2g438010 68.868 106 33 0 390 495 230 335 4.35e-44 161
MS.gene073433.t1 MTR_2g437260 43.341 413 151 12 1 394 1 349 1.38e-90 282
MS.gene073433.t1 MTR_2g437260 43.396 106 58 2 392 495 193 298 4.53e-23 101
MS.gene073433.t1 MTR_2g437940 44.000 375 126 9 21 392 42 335 1.46e-77 248
MS.gene073433.t1 MTR_2g437940 73.585 106 28 0 390 495 181 286 2.47e-46 166
MS.gene073433.t1 MTR_2g437130 41.351 370 160 7 25 392 38 352 4.41e-75 242
MS.gene073433.t1 MTR_2g437130 64.151 106 38 0 390 495 198 303 4.28e-40 149
MS.gene073433.t1 MTR_4g119550 46.691 272 106 5 25 295 46 279 4.47e-71 232
MS.gene073433.t1 MTR_4g119550 45.283 106 58 0 390 495 207 312 3.44e-29 119
MS.gene073433.t1 MTR_2g437030 38.583 381 177 7 19 396 115 441 7.22e-71 233
MS.gene073433.t1 MTR_2g437030 55.660 106 47 0 390 495 283 388 1.65e-32 130
MS.gene073433.t1 MTR_2g437080 37.629 388 169 9 19 395 29 354 4.76e-70 229
MS.gene073433.t1 MTR_2g437080 33.716 261 156 7 246 495 48 302 1.07e-34 134
MS.gene073433.t1 MTR_2g436440 37.824 386 183 6 9 391 25 356 1.64e-69 228
MS.gene073433.t1 MTR_2g436440 42.361 144 80 2 355 495 165 308 4.13e-31 124
MS.gene073433.t1 MTR_2g437020 37.470 411 181 9 20 418 29 375 4.94e-68 223
MS.gene073433.t1 MTR_2g437020 63.441 93 34 0 403 495 211 303 6.01e-35 135
MS.gene073433.t1 MTR_2g437040 43.448 290 119 5 8 295 23 269 1.53e-65 217
MS.gene073433.t1 MTR_2g437040 56.364 110 48 0 386 495 193 302 1.40e-33 131
MS.gene073433.t1 MTR_2g437060 38.133 375 175 8 19 390 44 364 1.48e-64 215
MS.gene073433.t1 MTR_2g437060 55.660 106 47 0 390 495 212 317 3.34e-34 133
MS.gene073433.t1 MTR_2g436400 34.988 403 197 11 21 417 38 381 2.22e-58 198
MS.gene073433.t1 MTR_2g436400 56.311 103 45 0 393 495 207 309 9.91e-35 134
MS.gene073433.t1 MTR_2g436460 36.702 376 178 8 24 395 41 360 3.15e-57 195
MS.gene073433.t1 MTR_2g436460 52.885 104 48 1 393 495 205 308 1.55e-27 114
MS.gene073433.t1 MTR_4g120380 39.172 314 129 5 24 325 38 301 6.42e-53 183
MS.gene073433.t1 MTR_4g120380 49.038 104 53 0 386 489 195 298 9.12e-27 112
MS.gene073433.t1 MTR_4g119580 38.889 288 130 4 32 319 46 287 1.19e-52 183
MS.gene073433.t1 MTR_4g119580 41.176 136 73 2 359 489 165 298 2.41e-25 107
MS.gene073433.t1 MTR_4g120380 39.172 314 129 5 24 325 38 301 9.82e-52 181
MS.gene073433.t1 MTR_4g120380 49.038 104 53 0 386 489 195 298 4.19e-26 110
MS.gene073433.t1 MTR_4g120380 27.586 319 168 12 199 495 106 383 1.23e-17 85.5
MS.gene073433.t1 MTR_2g019810 40.293 273 112 6 29 294 30 258 3.27e-47 168
MS.gene073433.t1 MTR_2g019810 48.544 103 47 2 393 495 196 292 3.00e-19 89.7
MS.gene073433.t1 MTR_2g437160 71.154 104 30 0 392 495 133 236 1.38e-45 162
MS.gene073433.t1 MTR_2g437160 40.678 177 76 3 225 394 133 287 3.70e-28 114
MS.gene073433.t1 MTR_2g437160 40.361 166 81 6 21 168 50 215 3.22e-22 97.8
MS.gene073433.t1 MTR_2g019840 38.686 274 125 6 24 294 37 270 7.64e-44 159
MS.gene073433.t1 MTR_2g019840 47.253 91 47 1 408 498 218 307 3.09e-19 90.1
MS.gene073433.t1 MTR_3g085240 44.309 246 72 7 1 235 21 212 2.31e-41 149
MS.gene073433.t1 MTR_2g436370 36.548 197 85 4 21 215 37 195 1.58e-30 118
MS.gene073433.t1 MTR_4g119570 44.737 152 81 2 144 295 15 163 3.54e-30 118
MS.gene073433.t1 MTR_4g119570 48.718 78 40 0 392 469 93 170 3.53e-18 84.3
MS.gene073433.t1 MTR_3g450500 29.259 270 147 6 32 295 40 271 6.42e-30 120
MS.gene073433.t1 MTR_3g450500 32.000 100 66 1 390 487 197 296 8.49e-12 67.4
MS.gene073433.t1 MTR_4g007490 29.730 296 167 6 32 323 39 297 2.15e-29 119
MS.gene073433.t1 MTR_2g437090 55.056 89 40 0 406 494 1 89 3.66e-29 113
MS.gene073433.t1 MTR_2g437090 32.105 190 92 7 239 418 1 163 8.45e-16 75.9
MS.gene073433.t1 MTR_4g049400 47.656 128 56 3 21 137 37 164 9.95e-28 111
MS.gene073433.t1 MTR_2g437680 72.581 62 16 1 315 375 2 63 6.33e-20 84.3
MS.gene073433.t1 MTR_2g436380 61.404 57 22 0 239 295 1 57 1.09e-16 80.9
MS.gene073433.t1 MTR_2g436380 57.377 61 26 0 406 466 1 61 2.55e-16 79.7
MS.gene073433.t1 MTR_8g081000 23.849 239 143 3 59 295 85 286 5.37e-13 71.2
MS.gene073433.t1 MTR_8g081000 23.849 239 143 3 59 295 85 286 6.48e-13 70.9
MS.gene073433.t1 MTR_8g081000 23.849 239 143 3 59 295 85 286 7.10e-13 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene073433.t1 AT5G07900 28.322 286 157 5 23 295 51 301 4.42e-30 122
MS.gene073433.t1 AT5G07900 33.708 89 58 1 411 498 249 337 1.64e-11 66.6
MS.gene073433.t1 AT1G21150 31.818 264 143 2 32 293 57 285 3.92e-29 119
MS.gene073433.t1 AT1G21150 31.818 264 143 2 32 293 121 349 1.06e-28 119
MS.gene073433.t1 AT1G21150 29.851 268 151 2 28 293 17 249 2.15e-26 110
MS.gene073433.t1 AT1G61990 29.503 322 172 7 7 321 24 297 2.96e-26 111
MS.gene073433.t1 AT1G61990 29.503 322 172 7 7 321 24 297 2.96e-26 111
MS.gene073433.t1 AT3G46950 29.766 299 152 9 6 295 26 275 3.92e-25 108
MS.gene073433.t1 AT1G61960 31.698 265 143 4 32 295 53 280 6.61e-25 107
MS.gene073433.t1 AT1G61980 30.943 265 144 6 32 295 53 279 2.37e-24 105
MS.gene073433.t1 AT1G61980 30.943 265 144 6 32 295 53 279 2.37e-24 105
MS.gene073433.t1 AT1G61980 30.943 265 144 6 32 295 53 279 2.37e-24 105
MS.gene073433.t1 AT1G61970 28.000 300 167 7 7 295 18 279 4.21e-24 105
MS.gene073433.t1 AT1G61970 28.000 300 167 7 7 295 18 279 4.21e-24 105
MS.gene073433.t1 AT1G61970 28.000 300 167 7 7 295 18 279 4.21e-24 105
MS.gene073433.t1 AT1G61970 28.000 300 167 7 7 295 18 279 4.21e-24 105
MS.gene073433.t1 AT1G61970 28.000 300 167 7 7 295 18 279 4.21e-24 105
MS.gene073433.t1 AT1G61970 28.000 300 167 7 7 295 18 279 4.21e-24 105
MS.gene073433.t1 AT1G61970 28.000 300 167 7 7 295 18 279 4.21e-24 105
MS.gene073433.t1 AT1G62120 30.508 295 163 6 30 321 55 310 6.57e-23 101
MS.gene073433.t1 AT1G62110 30.189 265 148 5 32 295 53 281 7.75e-23 101
MS.gene073433.t1 AT1G62085 30.034 293 163 6 32 321 56 309 8.36e-23 101
MS.gene073433.t1 AT1G62085 30.034 293 163 6 32 321 56 309 8.36e-23 101
MS.gene073433.t1 AT1G62150 27.778 324 172 7 32 352 59 323 4.87e-22 99.4
MS.gene073433.t1 AT5G23930 26.966 267 147 7 32 295 56 277 4.00e-14 75.1
MS.gene073433.t1 AT5G64950 22.590 332 204 7 24 347 32 318 3.66e-13 71.6
MS.gene073433.t1 AT1G62010 27.027 259 147 5 64 321 71 288 6.83e-13 70.9
MS.gene073433.t1 AT1G56380 33.099 142 91 2 32 170 28 168 7.22e-12 67.8
MS.gene073433.t1 AT1G56380 33.099 142 91 2 32 170 17 157 7.58e-12 67.4

Find 86 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAATTTGATGACTGATTT+TGG 0.089088 2.4:-53800607 MS.gene073433:CDS
GGTCCTTCATTGGCTACTTT+TGG 0.164539 2.4:-53799476 MS.gene073433:CDS
TTCAATTGATAAGATTAATT+TGG 0.211307 2.4:-53798500 MS.gene073433:CDS
TAGAGGAAGTTAAGTGTTTA+GGG 0.232380 2.4:-53800507 MS.gene073433:CDS
TTGGAGGAAGTTAAAGGTTT+AGG 0.236931 2.4:-53798682 MS.gene073433:CDS
AAGCTAGTTTGTAAAATATC+AGG 0.247708 2.4:+53800760 None:intergenic
TTAGAGGAAGTTAAGTGTTT+AGG 0.252656 2.4:-53800508 MS.gene073433:CDS
GATCCTTCAATCACTACTTT+TGG 0.257134 2.4:-53798655 MS.gene073433:CDS
CTAGAAAGGCCATCTATATT+TGG 0.258714 2.4:-53799548 MS.gene073433:CDS
TTTCTCTGTCGCAATGCTTT+TGG 0.260075 2.4:-53801222 MS.gene073433:CDS
CGGTGCAAGTTGTGTCGTAT+TGG 0.262444 2.4:+53797736 None:intergenic
GAAGTTAAGGGTTTGGGGTT+TGG 0.267974 2.4:-53799497 MS.gene073433:CDS
TGGAGGAAGTTAAAGGTTTA+GGG 0.271068 2.4:-53798681 MS.gene073433:CDS
TTGGAGGAAGTTAAGGGTTT+GGG 0.278438 2.4:-53799503 MS.gene073433:CDS
AAGTCATTGGAGGAAGTTAA+AGG 0.288064 2.4:-53798688 MS.gene073433:CDS
AATTTGGTGGAATAAGTAAA+TGG 0.291352 2.4:+53799135 None:intergenic
GGTGCAAGTTGTGTCGTATT+GGG 0.300702 2.4:+53797737 None:intergenic
TTTGGGGTTTGGTCCTTCAT+TGG 0.311462 2.4:-53799486 MS.gene073433:CDS
TCCTTTGAACAAAATATAGA+TGG 0.321886 2.4:+53798718 None:intergenic
AAAGGATTTGATTAAGTCAT+TGG 0.323129 2.4:-53798701 MS.gene073433:CDS
ATTGAAGCCAACATCAAATA+AGG 0.325234 2.4:+53798517 None:intergenic
AAACTTGCTCAAGAACAATT+TGG 0.328960 2.4:+53799119 None:intergenic
TTGGTCCAACTGGTTTGATT+AGG 0.335285 2.4:-53799529 MS.gene073433:CDS
CTCAACTTCTTCAAAATTCA+CGG 0.343864 2.4:-53801036 MS.gene073433:CDS
AACTGGTTTGATTAGGTCAT+TGG 0.344318 2.4:-53799522 MS.gene073433:CDS
AAGCTTAATTCCAAGAACTT+AGG 0.347303 2.4:+53800865 None:intergenic
AAGATGTTATTCGAGCATTT+AGG 0.355683 2.4:-53800372 MS.gene073433:intron
TAGTGGTAACCCTAAGTTCT+TGG 0.369201 2.4:-53800875 MS.gene073433:CDS
TGATTTGATTAAGTCATTAG+AGG 0.371105 2.4:-53800524 MS.gene073433:CDS
CCATCTATATTTGGTCCAAC+TGG 0.377632 2.4:-53799539 MS.gene073433:CDS
AAGAAGTTGAGAACTGAATC+AGG 0.382302 2.4:+53801048 None:intergenic
TCTTATCTCATCGATAAATT+CGG 0.385164 2.4:-53801132 MS.gene073433:CDS
TAGGTCATTGGAGGAAGTTA+AGG 0.386684 2.4:-53799510 MS.gene073433:CDS
AATTGATATTAGCCACAATA+AGG 0.389243 2.4:+53800623 None:intergenic
AAGTTGACGTCTATAAGAAA+TGG 0.393555 2.4:-53798582 MS.gene073433:CDS
AGCTTAATTCCAAGAACTTA+GGG 0.393617 2.4:+53800866 None:intergenic
ATCAGATGAAGAAGCACCTT+TGG 0.404344 2.4:+53800807 None:intergenic
AGTTGACGTCTATAAGAAAT+GGG 0.412386 2.4:-53798581 MS.gene073433:CDS
TCAAATGGGTTGGGATTCCT+TGG 0.413582 2.4:-53798458 MS.gene073433:CDS
AGGTCATTGGAGGAAGTTAA+GGG 0.415090 2.4:-53799509 MS.gene073433:CDS
GCAGAGAATGATATCCTTGT+CGG 0.415170 2.4:+53800687 None:intergenic
GTCAGAGGTAGAAGCACCTT+TGG 0.417863 2.4:+53800912 None:intergenic
TTGGGTTAATCAAATGGGTT+GGG 0.420431 2.4:-53798467 MS.gene073433:CDS
TCAGATGAACCAAATATAGA+TGG 0.421316 2.4:+53800544 None:intergenic
ATTGGAGGAAGTTAAGGGTT+TGG 0.439996 2.4:-53799504 MS.gene073433:CDS
AATGTATGAGTAAAACATGT+TGG 0.440381 2.4:-53799433 MS.gene073433:CDS
GACATTGTCCGCATGGTTAG+TGG 0.442987 2.4:-53800892 MS.gene073433:CDS
TATCTTCTGATGAAAGTTTG+AGG 0.445106 2.4:-53799182 MS.gene073433:CDS
TTTGGGTTAATCAAATGGGT+TGG 0.454317 2.4:-53798468 MS.gene073433:CDS
GTTTCAGCCTTATTTGATGT+TGG 0.461370 2.4:-53798524 MS.gene073433:CDS
TTGCTAGATTGCTTCTAGAA+AGG 0.472917 2.4:-53799562 MS.gene073433:intron
CCAGTTGGACCAAATATAGA+TGG 0.479635 2.4:+53799539 None:intergenic
TAACTTAAGTCAAAGTTCTT+CGG 0.482478 2.4:+53797716 None:intergenic
TGGAGGAAGTTAAGGGTTTG+GGG 0.488916 2.4:-53799502 MS.gene073433:CDS
ACCCTAAAAGTAGTCGTTGA+AGG 0.504836 2.4:+53800478 None:intergenic
GTCCCAAAAGTAGTGATTGA+AGG 0.505609 2.4:+53798652 None:intergenic
AAGGATCATTCCAAGGGCAT+TGG 0.517902 2.4:-53799213 MS.gene073433:CDS
GCCCCAAAAGTAGCCAATGA+AGG 0.534578 2.4:+53799473 None:intergenic
CTTGCTCAAGAACAATTTGG+TGG 0.537950 2.4:+53799122 None:intergenic
TGGTTTGATTAGGTCATTGG+AGG 0.539142 2.4:-53799519 MS.gene073433:CDS
ATGTATGAGTAAAACATGTT+GGG 0.544119 2.4:-53799432 MS.gene073433:CDS
GTGAAGTGGTAGTAGTGGTA+AGG 0.547397 2.4:+53801169 None:intergenic
TATTGCACAACCAATGCCCT+TGG 0.548759 2.4:+53799203 None:intergenic
TGCAGAAAAGGATCATTCCA+AGG 0.555097 2.4:-53799220 MS.gene073433:intron
TAGCCCACATCGCCTTATTG+TGG 0.556654 2.4:-53800635 MS.gene073433:CDS
TACCTCTGACATTGTCCGCA+TGG 0.562085 2.4:-53800899 MS.gene073433:CDS
AGCTAGTTTGTAAAATATCA+GGG 0.570802 2.4:+53800761 None:intergenic
GGATTTGATTAAGTCATTGG+AGG 0.571043 2.4:-53798698 MS.gene073433:CDS
ATGAGATAAGACACAGCGAA+AGG 0.577670 2.4:+53801144 None:intergenic
TGAGATAAGACACAGCGAAA+GGG 0.594278 2.4:+53801145 None:intergenic
TAGCCACAATAAGGCGATGT+GGG 0.594917 2.4:+53800632 None:intergenic
TTTCTGAAGCAATTTAGCAA+TGG 0.600000 2.4:+53800570 None:intergenic
TGTACATTTAACAAGTGCCA+AGG 0.619207 2.4:+53798441 None:intergenic
AGGGTGTGAAGTGGTAGTAG+TGG 0.620465 2.4:+53801164 None:intergenic
AATGACCTAATCAAACCAGT+TGG 0.631699 2.4:+53799524 None:intergenic
GCAGAAAAGGATCATTCCAA+GGG 0.639024 2.4:-53799219 MS.gene073433:intron
CACAGCGAAAGGGTGTGAAG+TGG 0.647943 2.4:+53801155 None:intergenic
GTCGATGTCTTTGAGAAACG+AGG 0.648037 2.4:-53799401 MS.gene073433:intron
ACGTCTATAAGAAATGGGGT+TGG 0.656465 2.4:-53798576 MS.gene073433:CDS
ACATCATCAAAAGAGAACCA+TGG 0.657560 2.4:-53800990 MS.gene073433:CDS
AACCATGCGGACAATGTCAG+AGG 0.657894 2.4:+53800897 None:intergenic
GTATCGCAGGAAAGAAGCCA+TGG 0.666550 2.4:+53800973 None:intergenic
TTAGCCACAATAAGGCGATG+TGG 0.673377 2.4:+53800631 None:intergenic
GTTGACGTCTATAAGAAATG+GGG 0.692031 2.4:-53798580 MS.gene073433:CDS
GATGTTGAGAATATCTGAGT+CGG 0.696789 2.4:+53801008 None:intergenic
TAGGGTTACCACTAACCATG+CGG 0.739529 2.4:+53800884 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTATGAGTAAAAAATTTT+GGG - chr2.4:53798522-53798541 MS.gene073433:CDS 10.0%
!!! TATTTATGAGTAAAAAATTT+TGG - chr2.4:53798521-53798540 MS.gene073433:CDS 10.0%
!! GATTAGTAATAAACTAATAA+TGG + chr2.4:53801070-53801089 None:intergenic 15.0%
!! TTCAATTGATAAGATTAATT+TGG - chr2.4:53800459-53800478 MS.gene073433:CDS 15.0%
!!! TACTTATTTTAAAACTAACA+AGG - chr2.4:53800084-53800103 MS.gene073433:intron 15.0%
!!! TTAGTTTTTAAAATTGATAG+AGG - chr2.4:53799004-53799023 MS.gene073433:intron 15.0%
!!! TTTTTTACTCATAAATATCT+TGG + chr2.4:53798518-53798537 None:intergenic 15.0%
!! AAACTATAACCAAACATAAT+TGG + chr2.4:53798715-53798734 None:intergenic 20.0%
!! AAACTTAAACCAAAAATATG+TGG + chr2.4:53799720-53799739 None:intergenic 20.0%
!! AAAGTTTGAGTAAAAAACTT+TGG - chr2.4:53800347-53800366 MS.gene073433:intron 20.0%
!! AAGTTTGAGTAAAAAACTTT+GGG - chr2.4:53800348-53800367 MS.gene073433:intron 20.0%
!! AATGAAATTTGCAAATACAA+AGG - chr2.4:53800737-53800756 MS.gene073433:CDS 20.0%
!! AATGTGTTATAAAAAATGGA+CGG - chr2.4:53801111-53801130 MS.gene073433:CDS 20.0%
!! AATTTCTCAGAATAAGTAAA+TGG + chr2.4:53798823-53798842 None:intergenic 20.0%
!! AGAGTAAAAATTGAAACTTT+GGG + chr2.4:53798027-53798046 None:intergenic 20.0%
!! AGTAATAAACTAATAATGGT+TGG + chr2.4:53801066-53801085 None:intergenic 20.0%
!! ATAAAGCATGATAAATCATA+AGG + chr2.4:53799095-53799114 None:intergenic 20.0%
!! ATCTATTATTGCTATATATG+AGG - chr2.4:53799885-53799904 MS.gene073433:intron 20.0%
!! GTAATAAACTAATAATGGTT+GGG + chr2.4:53801065-53801084 None:intergenic 20.0%
!! TAAATACTTCAAATCAAAGA+AGG + chr2.4:53800824-53800843 None:intergenic 20.0%
!! TAATAAACTAATAATGGTTG+GGG + chr2.4:53801064-53801083 None:intergenic 20.0%
!! TACTTAACAATTCAAAAAGA+GGG + chr2.4:53798240-53798259 None:intergenic 20.0%
!! TAGATATAGAAAAGCTTAAA+TGG - chr2.4:53799121-53799140 MS.gene073433:intron 20.0%
!! TTATCTATTAAAGCTATATG+AGG - chr2.4:53798885-53798904 MS.gene073433:intron 20.0%
!! TTCAGTTCATAAGTTTAATT+TGG - chr2.4:53799638-53799657 MS.gene073433:intron 20.0%
!! TTGCAATTTCTATTTATGAA+AGG - chr2.4:53798766-53798785 MS.gene073433:intron 20.0%
!!! AATTTTTGGGTTAATCAAAT+GGG - chr2.4:53800487-53800506 MS.gene073433:CDS 20.0%
!!! TAATTTGGATATGAGTTTTT+GGG - chr2.4:53799653-53799672 MS.gene073433:intron 20.0%
!!! TAATTTGGTGATGAATTTTT+GGG - chr2.4:53800474-53800493 MS.gene073433:CDS 20.0%
!!! TAATTTGTTGATGAGTTTTT+GGG - chr2.4:53798648-53798667 MS.gene073433:CDS 20.0%
!!! TTAATTTGGATATGAGTTTT+TGG - chr2.4:53799652-53799671 MS.gene073433:intron 20.0%
!!! TTAATTTGGTGATGAATTTT+TGG - chr2.4:53800473-53800492 MS.gene073433:CDS 20.0%
!!! TTAATTTGTTGATGAGTTTT+TGG - chr2.4:53798647-53798666 MS.gene073433:CDS 20.0%
!!! TTGAAGTATTTATTCTTTCT+AGG - chr2.4:53800832-53800851 MS.gene073433:CDS 20.0%
!!! TTTGAATTTTTTCTATCCAA+AGG - chr2.4:53798136-53798155 MS.gene073433:intron 20.0%
!!! TTTTAAAAACTAACAAGCTA+AGG + chr2.4:53798997-53799016 None:intergenic 20.0%
! AAAGGATTTGATTAAGTCAT+TGG - chr2.4:53800258-53800277 MS.gene073433:intron 25.0%
! AATAAACTAATAATGGTTGG+GGG + chr2.4:53801063-53801082 None:intergenic 25.0%
! AATAAGTACTATACTATCCT+AGG + chr2.4:53800072-53800091 None:intergenic 25.0%
! AATGAAACTTGCAAATACAA+AGG - chr2.4:53799912-53799931 MS.gene073433:intron 25.0%
! AATGTATGAGTAAAACATGT+TGG - chr2.4:53799526-53799545 MS.gene073433:CDS 25.0%
! AATTGATACTAGCAAAAACA+AGG + chr2.4:53799344-53799363 None:intergenic 25.0%
! AATTGATATTAGCCACAATA+AGG + chr2.4:53798339-53798358 None:intergenic 25.0%
! ACTAAATGTCCAATTATGTT+TGG - chr2.4:53798703-53798722 MS.gene073433:CDS 25.0%
! AGATTAACAAGTTACACATT+TGG + chr2.4:53799959-53799978 None:intergenic 25.0%
! ATATCCTCAGAATAAGTAAA+TGG + chr2.4:53800648-53800667 None:intergenic 25.0%
! ATGTATGAGTAAAACATGTT+GGG - chr2.4:53799527-53799546 MS.gene073433:CDS 25.0%
! CAAGTATGTTTACAACATTA+AGG - chr2.4:53800677-53800696 MS.gene073433:CDS 25.0%
! CTACTTAACAATTCAAAAAG+AGG + chr2.4:53798241-53798260 None:intergenic 25.0%
! GAGAGTAAAAATTGAAACTT+TGG + chr2.4:53798028-53798047 None:intergenic 25.0%
! GGGATTAAAAAGATAATGTA+TGG + chr2.4:53799316-53799335 None:intergenic 25.0%
! GTTAAATGTACACTTATGTT+TGG - chr2.4:53800529-53800548 MS.gene073433:CDS 25.0%
! TAAACCATTTACTTATTCTG+AGG - chr2.4:53800641-53800660 MS.gene073433:CDS 25.0%
! TAAGTACTTCAAATCAAAGA+AGG + chr2.4:53800007-53800026 None:intergenic 25.0%
! TCCTTTGAACAAAATATAGA+TGG + chr2.4:53800244-53800263 None:intergenic 25.0%
! TCTTATCTCATCGATAAATT+CGG - chr2.4:53797827-53797846 MS.gene073433:intron 25.0%
! TGATTTGATTAAGTCATTAG+AGG - chr2.4:53798435-53798454 MS.gene073433:intron 25.0%
! TGGGAATGTGTTATAAAAAA+TGG - chr2.4:53801107-53801126 MS.gene073433:CDS 25.0%
! TTATCTCTTTAAGCTATATG+AGG - chr2.4:53800710-53800729 MS.gene073433:CDS 25.0%
! TTGGCTATAGTTTACATAAA+AGG - chr2.4:53800548-53800567 MS.gene073433:CDS 25.0%
! TTGGTTATAGTTTACCTAAA+AGG - chr2.4:53798722-53798741 MS.gene073433:CDS 25.0%
!! AAGCTAGTTTGTAAAATATC+AGG + chr2.4:53798202-53798221 None:intergenic 25.0%
!! AATTTGGTGGAATAAGTAAA+TGG + chr2.4:53799827-53799846 None:intergenic 25.0%
!! ACCATCTATATTTTGTTCAA+AGG - chr2.4:53800240-53800259 MS.gene073433:intron 25.0%
!! AGCTAGTTTGTAAAATATCA+GGG + chr2.4:53798201-53798220 None:intergenic 25.0%
!! CTCTTTTTGAATTGTTAAGT+AGG - chr2.4:53798239-53798258 MS.gene073433:intron 25.0%
!! TGTTTTACTCATACATTTCT+TGG + chr2.4:53799523-53799542 None:intergenic 25.0%
!! TTTCAATTTTTACTCTCCAA+AGG - chr2.4:53798031-53798050 MS.gene073433:intron 25.0%
!!! AAGTTGACGTTTTTAAGAAA+TGG - chr2.4:53798551-53798570 MS.gene073433:CDS 25.0%
!!! ACTTGTTAATCTTCTTCTTT+TGG - chr2.4:53799967-53799986 MS.gene073433:intron 25.0%
!!! AGTTGACGTTTTTAAGAAAT+GGG - chr2.4:53798552-53798571 MS.gene073433:CDS 25.0%
!!! ATCAATTTGATGACTGATTT+TGG - chr2.4:53798352-53798371 MS.gene073433:intron 25.0%
!!! CAAGTTTGTTTTCTTCTTTA+AGG - chr2.4:53798852-53798871 MS.gene073433:intron 25.0%
!!! GAATTTTTGGGTTAATCAAA+TGG - chr2.4:53800486-53800505 MS.gene073433:CDS 25.0%
!!! TTGAAGTACTTATTTTGTCT+AGG - chr2.4:53800015-53800034 MS.gene073433:intron 25.0%
AAAGAAGGAACAAGATAAGA+TGG + chr2.4:53800809-53800828 None:intergenic 30.0%
AAGATGTTATTCGAGCATTT+AGG - chr2.4:53798587-53798606 MS.gene073433:CDS 30.0%
AAGCTTAATTCCAAGAACTT+AGG + chr2.4:53798097-53798116 None:intergenic 30.0%
AAGTTGACGTCTATAAGAAA+TGG - chr2.4:53800377-53800396 MS.gene073433:CDS 30.0%
AATCAATCAAACAACCACTT+TGG + chr2.4:53800996-53801015 None:intergenic 30.0%
AATTAAACTTGCATGCACAA+AGG - chr2.4:53798912-53798931 MS.gene073433:intron 30.0%
ACAATTTCTTTAGACCAAAG+TGG - chr2.4:53800979-53800998 MS.gene073433:CDS 30.0%
ACATAAAAGGATCATTCCAA+GGG - chr2.4:53800561-53800580 MS.gene073433:CDS 30.0%
AGCTTAATTCCAAGAACTTA+GGG + chr2.4:53798096-53798115 None:intergenic 30.0%
AGTTGACGTCTATAAGAAAT+GGG - chr2.4:53800378-53800397 MS.gene073433:CDS 30.0%
ATTGAAGCCAACATCAAATA+AGG + chr2.4:53800445-53800464 None:intergenic 30.0%
ATTGAAGTCAACATCGAAAT+AGG + chr2.4:53798619-53798638 None:intergenic 30.0%
CAGAAAAAGCCATCTATATT+TGG - chr2.4:53798406-53798425 MS.gene073433:intron 30.0%
CTCAACTTCTTCAAAATTCA+CGG - chr2.4:53797923-53797942 MS.gene073433:intron 30.0%
CTTAATTCGACATTCGAAAT+GGG - chr2.4:53800120-53800139 MS.gene073433:intron 30.0%
GATTGATATTAGCCACAATA+AGG + chr2.4:53800165-53800184 None:intergenic 30.0%
GTATGTTTACAACATTAAGG+AGG - chr2.4:53800680-53800699 MS.gene073433:CDS 30.0%
GTGGTATAAACAAACTATGT+AGG - chr2.4:53799222-53799241 MS.gene073433:intron 30.0%
GTTTGATCAAGAATACATAG+TGG - chr2.4:53799203-53799222 MS.gene073433:CDS 30.0%
TACATAAAAGGATCATTCCA+AGG - chr2.4:53800560-53800579 MS.gene073433:CDS 30.0%
TAGAGGAAGTTAAGTGTTTA+GGG - chr2.4:53798452-53798471 MS.gene073433:CDS 30.0%
TATAAACAAACTATGTAGGC+AGG - chr2.4:53799226-53799245 MS.gene073433:intron 30.0%
TATCTTCTGATGAAAGTTTG+AGG - chr2.4:53799777-53799796 MS.gene073433:intron 30.0%
TATTCTTGATCAAACACACA+TGG + chr2.4:53799198-53799217 None:intergenic 30.0%
TCAGATGAACCAAATATAGA+TGG + chr2.4:53798418-53798437 None:intergenic 30.0%
TTAGAGGAAGTTAAGTGTTT+AGG - chr2.4:53798451-53798470 MS.gene073433:CDS 30.0%
! AAACTTGCTCAAGAACAATT+TGG + chr2.4:53798839-53798858 None:intergenic 30.0%
! ATCAATCTGATGTCTGATTT+TGG - chr2.4:53800178-53800197 MS.gene073433:intron 30.0%
! ATTTTGCGCAGAAATAGAAT+TGG - chr2.4:53801013-53801032 MS.gene073433:CDS 30.0%
! GTTTAAAGGCCACATATTTT+TGG - chr2.4:53799708-53799727 MS.gene073433:intron 30.0%
! TTGCAGTTTCTTTTGATGAA+AGG - chr2.4:53800592-53800611 MS.gene073433:CDS 30.0%
! TTGGTTTAAGTTTGCAGAAA+AGG - chr2.4:53799727-53799746 MS.gene073433:intron 30.0%
!! ATCCTTCAATCACTACTTTT+GGG - chr2.4:53800305-53800324 MS.gene073433:intron 30.0%
!! GTTGACGTTTTTAAGAAATG+GGG - chr2.4:53798553-53798572 MS.gene073433:CDS 30.0%
!! GTTTGTTTTCTTCTTTAAGG+AGG - chr2.4:53798855-53798874 MS.gene073433:intron 30.0%
!! TTTCTGAAGCAATTTAGCAA+TGG + chr2.4:53798392-53798411 None:intergenic 30.0%
!!! AAGTTTTTTCCCAAGCATTT+AGG - chr2.4:53799592-53799611 MS.gene073433:intron 30.0%
!!! AGTTTTTGGGTCAATCAATT+GGG - chr2.4:53798661-53798680 MS.gene073433:CDS 30.0%
!!! AGTTTTTGGGTCAATCTATT+GGG - chr2.4:53799666-53799685 MS.gene073433:intron 30.0%
!!! GGTTTTGAAATAAAGCTGTT+TGG + chr2.4:53797882-53797901 None:intergenic 30.0%
AAGAAGTTGAGAACTGAATC+AGG + chr2.4:53797914-53797933 None:intergenic 35.0%
AAGTCATTGGAGGAAGTTAA+AGG - chr2.4:53800271-53800290 MS.gene073433:intron 35.0%
AATGACCTAATCAAACCAGT+TGG + chr2.4:53799438-53799457 None:intergenic 35.0%
AATGGACGGAACATATTTCT+TGG - chr2.4:53801125-53801144 MS.gene073433:CDS 35.0%
ACATCATCAAAAGAGAACCA+TGG - chr2.4:53797969-53797988 MS.gene073433:intron 35.0%
ACCTAAAAGGATCATTCCAA+GGG - chr2.4:53798735-53798754 MS.gene073433:CDS 35.0%
ACTAGCAAAAACAAGGTGAT+AGG + chr2.4:53799337-53799356 None:intergenic 35.0%
ATGGAAAGAGAACTAAGACA+AGG + chr2.4:53799179-53799198 None:intergenic 35.0%
ATGGACGGAACATATTTCTT+GGG - chr2.4:53801126-53801145 MS.gene073433:CDS 35.0%
ATTAGCCACAATAAGGTGAT+GGG + chr2.4:53800158-53800177 None:intergenic 35.0%
CAAGTTACACATTTGGTAGA+AGG + chr2.4:53799952-53799971 None:intergenic 35.0%
CTAGAAAGGCCATCTATATT+TGG - chr2.4:53799411-53799430 MS.gene073433:CDS 35.0%
CTAGCAAAAACAAGGTGATA+GGG + chr2.4:53799336-53799355 None:intergenic 35.0%
CTTGAGCAAGTTTGTCTTTA+AGG - chr2.4:53799850-53799869 MS.gene073433:intron 35.0%
GAAATCACATACTAAGCGAA+TGG + chr2.4:53798952-53798971 None:intergenic 35.0%
GATAATGTATGGAGAACCAA+AGG + chr2.4:53799305-53799324 None:intergenic 35.0%
GATGTTGAGAATATCTGAGT+CGG + chr2.4:53797954-53797973 None:intergenic 35.0%
GCAAATACAAAGGAGAACAA+TGG - chr2.4:53799922-53799941 MS.gene073433:intron 35.0%
GCTTAATTCGACATTCGAAA+TGG - chr2.4:53800119-53800138 MS.gene073433:intron 35.0%
GGATTTGATTAAGTCATTGG+AGG - chr2.4:53800261-53800280 MS.gene073433:intron 35.0%
GGTATTATTATCACCAACTC+TGG + chr2.4:53799074-53799093 None:intergenic 35.0%
GTATTTATTCTTTCTAGGCC+AGG - chr2.4:53800837-53800856 MS.gene073433:CDS 35.0%
GTTGACGTCTATAAGAAATG+GGG - chr2.4:53800379-53800398 MS.gene073433:CDS 35.0%
TACCTAAAAGGATCATTCCA+AGG - chr2.4:53798734-53798753 MS.gene073433:CDS 35.0%
TAGTTGCAATTTCGATGCAT+AGG - chr2.4:53800933-53800952 MS.gene073433:CDS 35.0%
TATTAGCCACAATAAGGTGA+TGG + chr2.4:53800159-53800178 None:intergenic 35.0%
TGGACATTTAGTAAGTTCCA+AGG + chr2.4:53798695-53798714 None:intergenic 35.0%
TGGAGGAAGTTAAAGGTTTA+GGG - chr2.4:53800278-53800297 MS.gene073433:intron 35.0%
TGTACATTTAACAAGTGCCA+AGG + chr2.4:53800521-53800540 None:intergenic 35.0%
TTGGAGGAAGTTAAAGGTTT+AGG - chr2.4:53800277-53800296 MS.gene073433:intron 35.0%
! AACTGAATCAGGTTTTTGTG+AGG + chr2.4:53797903-53797922 None:intergenic 35.0%
! ACACATTCCCAAAAGTATGA+TGG + chr2.4:53801098-53801117 None:intergenic 35.0%
! ATCTCACACCATCATACTTT+TGG - chr2.4:53801087-53801106 MS.gene073433:CDS 35.0%
! GATCCTTCAATCACTACTTT+TGG - chr2.4:53800304-53800323 MS.gene073433:intron 35.0%
! GCTAGTATCAATTTGATGAC+TGG - chr2.4:53799351-53799370 MS.gene073433:intron 35.0%
! TAAATGGTCTTGCATTGATC+TGG - chr2.4:53799137-53799156 MS.gene073433:CDS 35.0%
! TCTCACACCATCATACTTTT+GGG - chr2.4:53801088-53801107 MS.gene073433:CDS 35.0%
! TTCTAGAAGCAATCTAGCAA+TGG + chr2.4:53799397-53799416 None:intergenic 35.0%
! TTGCTAGATTGCTTCTAGAA+AGG - chr2.4:53799397-53799416 MS.gene073433:intron 35.0%
! TTGGGTTAATCAAATGGGTT+GGG - chr2.4:53800492-53800511 MS.gene073433:CDS 35.0%
! TTTGGGTTAATCAAATGGGT+TGG - chr2.4:53800491-53800510 MS.gene073433:CDS 35.0%
!! AACTGGTTTGATTAGGTCAT+TGG - chr2.4:53799437-53799456 MS.gene073433:CDS 35.0%
!! ACGTTTTTAAGAAATGGGGT+TGG - chr2.4:53798557-53798576 MS.gene073433:CDS 35.0%
!! ACTTTGGGAGAATTCTTTTG+TGG + chr2.4:53798012-53798031 None:intergenic 35.0%
!! ATCCTTCAACGACTACTTTT+AGG - chr2.4:53798479-53798498 MS.gene073433:CDS 35.0%
!! CTTTGGGAGAATTCTTTTGT+GGG + chr2.4:53798011-53798030 None:intergenic 35.0%
!! GTTTCAGCCTTATTTGATGT+TGG - chr2.4:53800435-53800454 MS.gene073433:CDS 35.0%
!! TAGGTTTTTGAAAACCGACA+AGG - chr2.4:53798258-53798277 MS.gene073433:intron 35.0%
!! TCCTTCAACGACTACTTTTA+GGG - chr2.4:53798480-53798499 MS.gene073433:CDS 35.0%
!! TTTTGTCTAGGACAGTATAG+TGG - chr2.4:53800027-53800046 MS.gene073433:intron 35.0%
!!! GAGTTTTTGGGTCAATCAAT+TGG - chr2.4:53798660-53798679 MS.gene073433:CDS 35.0%
!!! GAGTTTTTGGGTCAATCTAT+TGG - chr2.4:53799665-53799684 MS.gene073433:intron 35.0%
AATTGCAAAACTGATGCCCT+TGG + chr2.4:53798754-53798773 None:intergenic 40.0%
ACCCTAAAAGTAGTCGTTGA+AGG + chr2.4:53798484-53798503 None:intergenic 40.0%
ACGTCTATAAGAAATGGGGT+TGG - chr2.4:53800383-53800402 MS.gene073433:CDS 40.0%
ACTCCTTGGCACTTGTTTAA+AGG - chr2.4:53799694-53799713 MS.gene073433:intron 40.0%
AGAAGATCTTACCCATTTGG+TGG + chr2.4:53800781-53800800 None:intergenic 40.0%
AGACTGCAACCTAAATGCTT+GGG + chr2.4:53799604-53799623 None:intergenic 40.0%
AGGTCATTGGAGGAAGTTAA+GGG - chr2.4:53799450-53799469 MS.gene073433:CDS 40.0%
ATGAGATAAGACACAGCGAA+AGG + chr2.4:53797818-53797837 None:intergenic 40.0%
ATGGTTGGGGGATGAATTAA+TGG + chr2.4:53801051-53801070 None:intergenic 40.0%
ATTCTTTCTAGGCCAGGATA+AGG - chr2.4:53800843-53800862 MS.gene073433:CDS 40.0%
ATTGGAGGAAGTTAAGGGTT+TGG - chr2.4:53799455-53799474 MS.gene073433:CDS 40.0%
CAAAAGAAACTGCAAAACCG+AGG + chr2.4:53800587-53800606 None:intergenic 40.0%
CCAGTTGGACCAAATATAGA+TGG + chr2.4:53799423-53799442 None:intergenic 40.0%
CCATCTATATTTGGTCCAAC+TGG - chr2.4:53799420-53799439 MS.gene073433:CDS 40.0%
CTTGCTCAAGAACAATTTGG+TGG + chr2.4:53799840-53799859 None:intergenic 40.0%
GACAGAAGATCTTACCCATT+TGG + chr2.4:53800784-53800803 None:intergenic 40.0%
GCAGAAAAGGATCATTCCAA+GGG - chr2.4:53799740-53799759 MS.gene073433:intron 40.0%
GCAGAGAATGATATCCTTGT+CGG + chr2.4:53798275-53798294 None:intergenic 40.0%
GCATGCACAAAGGAAAACAA+TGG - chr2.4:53798922-53798941 MS.gene073433:intron 40.0%
GCATTACCAACATCAGACAA+AGG + chr2.4:53801175-53801194 None:intergenic 40.0%
GTCCCAAAAGTAGTGATTGA+AGG + chr2.4:53800310-53800329 None:intergenic 40.0%
TAGACTGCAACCTAAATGCT+TGG + chr2.4:53799605-53799624 None:intergenic 40.0%
TAGGACAGTATAGTGGTTAC+TGG - chr2.4:53800034-53800053 MS.gene073433:intron 40.0%
TAGGTCATTGGAGGAAGTTA+AGG - chr2.4:53799449-53799468 MS.gene073433:CDS 40.0%
TAGTGGTAACCCTAAGTTCT+TGG - chr2.4:53798084-53798103 MS.gene073433:intron 40.0%
TGAGATAAGACACAGCGAAA+GGG + chr2.4:53797817-53797836 None:intergenic 40.0%
TGCAGAAAAGGATCATTCCA+AGG - chr2.4:53799739-53799758 MS.gene073433:intron 40.0%
TGGTTTGATTAGGTCATTGG+AGG - chr2.4:53799440-53799459 MS.gene073433:CDS 40.0%
TTAGCCACAATAAGGTGATG+GGG + chr2.4:53800157-53800176 None:intergenic 40.0%
TTCTTTCTAGGCCAGGATAA+GGG - chr2.4:53800844-53800863 MS.gene073433:CDS 40.0%
TTGGAGGAAGTTAAGGGTTT+GGG - chr2.4:53799456-53799475 MS.gene073433:CDS 40.0%
TTTACCTCAACTGCAGACAA+AGG + chr2.4:53801197-53801216 None:intergenic 40.0%
TTTGGGTCAATCAATTGGGT+CGG - chr2.4:53798665-53798684 MS.gene073433:CDS 40.0%
! ATGTCTTTGAGAAACGAGGT+TGG - chr2.4:53799562-53799581 MS.gene073433:intron 40.0%
! ATTTCTTGGGAGGCTATTTC+TGG - chr2.4:53801139-53801158 MS.gene073433:CDS 40.0%
! GAGCAAGTTTGTCTTTAAGG+AGG - chr2.4:53799853-53799872 MS.gene073433:intron 40.0%
! GTCTTGCATTGATCTGGTAA+GGG - chr2.4:53799143-53799162 MS.gene073433:CDS 40.0%
! GTTGCAGTCTAGTTTGATGT+TGG - chr2.4:53799614-53799633 MS.gene073433:intron 40.0%
! TCTATTGGGTTAGAACTCCT+TGG - chr2.4:53799680-53799699 MS.gene073433:intron 40.0%
! TTTCTCTGTCGCAATGCTTT+TGG - chr2.4:53797737-53797756 MS.gene073433:CDS 40.0%
!! AATTCTTTTGTGGGTATCGC+AGG + chr2.4:53798002-53798021 None:intergenic 40.0%
!! ATCAGATGAAGAAGCACCTT+TGG + chr2.4:53798155-53798174 None:intergenic 40.0%
!! TTGGTCCAACTGGTTTGATT+AGG - chr2.4:53799430-53799449 MS.gene073433:CDS 40.0%
!!! GACTACTTTTAGGGTTGCTT+TGG - chr2.4:53798489-53798508 MS.gene073433:CDS 40.0%
!!! GTCCTTCATTGGCTACTTTT+GGG - chr2.4:53799484-53799503 MS.gene073433:CDS 40.0%
!!! TCCTTCATTGGCTACTTTTG+GGG - chr2.4:53799485-53799504 MS.gene073433:CDS 40.0%
!!! TTTCCTAGCTGCTTTTCCTT+TGG - chr2.4:53799286-53799305 MS.gene073433:intron 40.0%
AATGCCTTTGTCTGCAGTTG+AGG - chr2.4:53801190-53801209 MS.gene073433:CDS 45.0%
ACAATACCAACCCCTTATCC+TGG + chr2.4:53800858-53800877 None:intergenic 45.0%
AGCATGCCTTTGTCTGATGT+TGG - chr2.4:53801166-53801185 MS.gene073433:CDS 45.0%
ATGGCATGTCATCCACCAAA+TGG - chr2.4:53800766-53800785 MS.gene073433:CDS 45.0%
GAACCAAAGGAAAAGCAGCT+AGG + chr2.4:53799292-53799311 None:intergenic 45.0%
GACGGAACATATTTCTTGGG+AGG - chr2.4:53801129-53801148 MS.gene073433:CDS 45.0%
GGTGCAAGTTGTGTCGTATT+GGG + chr2.4:53801225-53801244 None:intergenic 45.0%
GTATCCCCATCACCTTATTG+TGG - chr2.4:53800150-53800169 MS.gene073433:intron 45.0%
GTGAAGTGGTAGTAGTGGTA+AGG + chr2.4:53797793-53797812 None:intergenic 45.0%
TAGCCACAATAAGGCGATGT+GGG + chr2.4:53798330-53798349 None:intergenic 45.0%
TAGGGTTACCACTAACCATG+CGG + chr2.4:53798078-53798097 None:intergenic 45.0%
TATTGCACAACCAATGCCCT+TGG + chr2.4:53799759-53799778 None:intergenic 45.0%
TCAATTGGGTCGGAATTCCT+TGG - chr2.4:53798675-53798694 MS.gene073433:CDS 45.0%
TCTTTCTAGGCCAGGATAAG+GGG - chr2.4:53800845-53800864 MS.gene073433:CDS 45.0%
TGGAGGAAGTTAAGGGTTTG+GGG - chr2.4:53799457-53799476 MS.gene073433:CDS 45.0%
TGGCATGTCATCCACCAAAT+GGG - chr2.4:53800767-53800786 MS.gene073433:CDS 45.0%
TGGCCTTTAAACAAGTGCCA+AGG + chr2.4:53799700-53799719 None:intergenic 45.0%
TTAGCCACAATAAGGCGATG+TGG + chr2.4:53798331-53798350 None:intergenic 45.0%
! AAGGATCATTCCAAGGGCAT+TGG - chr2.4:53798741-53798760 MS.gene073433:intron 45.0%
! GAAGTTAAGGGTTTGGGGTT+TGG - chr2.4:53799462-53799481 MS.gene073433:CDS 45.0%
! GCCCTTGGAATGATCCTTTT+AGG + chr2.4:53798739-53798758 None:intergenic 45.0%
! GGTCTTGCATTGATCTGGTA+AGG - chr2.4:53799142-53799161 MS.gene073433:CDS 45.0%
! GTCGATGTCTTTGAGAAACG+AGG - chr2.4:53799558-53799577 MS.gene073433:CDS 45.0%
! TTTGGGGTTTGGTCCTTCAT+TGG - chr2.4:53799473-53799492 MS.gene073433:CDS 45.0%
!! GGATAAGGGGTTGGTATTGT+TGG - chr2.4:53800858-53800877 MS.gene073433:CDS 45.0%
!! GGTCCTTCATTGGCTACTTT+TGG - chr2.4:53799483-53799502 MS.gene073433:CDS 45.0%
!! TCAAATGGGTTGGGATTCCT+TGG - chr2.4:53800501-53800520 MS.gene073433:CDS 45.0%
AACCATGCGGACAATGTCAG+AGG + chr2.4:53798065-53798084 None:intergenic 50.0%
AAGGATCATTCCAAGGGCCT+CGG - chr2.4:53800567-53800586 MS.gene073433:CDS 50.0%
ACTGGTTAGTGCAGTTGCCT+AGG - chr2.4:53800052-53800071 MS.gene073433:intron 50.0%
AGGGTGTGAAGTGGTAGTAG+TGG + chr2.4:53797798-53797817 None:intergenic 50.0%
CAACTCTGGCACTCTGATCT+GGG + chr2.4:53799060-53799079 None:intergenic 50.0%
CGGTGCAAGTTGTGTCGTAT+TGG + chr2.4:53801226-53801245 None:intergenic 50.0%
GACATTGTCCGCATGGTTAG+TGG - chr2.4:53798067-53798086 MS.gene073433:intron 50.0%
GCCCCAAAAGTAGCCAATGA+AGG + chr2.4:53799489-53799508 None:intergenic 50.0%
GTATCGCAGGAAAGAAGCCA+TGG + chr2.4:53797989-53798008 None:intergenic 50.0%
TACCTCTGACATTGTCCGCA+TGG - chr2.4:53798060-53798079 MS.gene073433:intron 50.0%
! TAGCCCACATCGCCTTATTG+TGG - chr2.4:53798324-53798343 MS.gene073433:intron 50.0%
!! GTCAGAGGTAGAAGCACCTT+TGG + chr2.4:53798050-53798069 None:intergenic 50.0%
AACTGCAAAACCGAGGCCCT+TGG + chr2.4:53800580-53800599 None:intergenic 55.0%
CCAACTCTGGCACTCTGATC+TGG + chr2.4:53799061-53799080 None:intergenic 55.0%
TCTAGGCCAGGATAAGGGGT+TGG - chr2.4:53800849-53800868 MS.gene073433:CDS 55.0%
! CACAGCGAAAGGGTGTGAAG+TGG + chr2.4:53797807-53797826 None:intergenic 55.0%
! CCAGATCAGAGTGCCAGAGT+TGG - chr2.4:53799058-53799077 MS.gene073433:intron 55.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 53797725 53801256 53797725 ID=MS.gene073433
chr2.4 mRNA 53797725 53801256 53797725 ID=MS.gene073433.t1;Parent=MS.gene073433
chr2.4 exon 53800373 53801256 53800373 ID=MS.gene073433.t1.exon1;Parent=MS.gene073433.t1
chr2.4 CDS 53800373 53801256 53800373 ID=cds.MS.gene073433.t1;Parent=MS.gene073433.t1
chr2.4 exon 53799402 53799577 53799402 ID=MS.gene073433.t1.exon2;Parent=MS.gene073433.t1
chr2.4 CDS 53799402 53799577 53799402 ID=cds.MS.gene073433.t1;Parent=MS.gene073433.t1
chr2.4 exon 53799123 53799237 53799123 ID=MS.gene073433.t1.exon3;Parent=MS.gene073433.t1
chr2.4 CDS 53799123 53799237 53799123 ID=cds.MS.gene073433.t1;Parent=MS.gene073433.t1
chr2.4 exon 53798446 53798756 53798446 ID=MS.gene073433.t1.exon4;Parent=MS.gene073433.t1
chr2.4 CDS 53798446 53798756 53798446 ID=cds.MS.gene073433.t1;Parent=MS.gene073433.t1
chr2.4 exon 53797725 53797774 53797725 ID=MS.gene073433.t1.exon5;Parent=MS.gene073433.t1
chr2.4 CDS 53797725 53797774 53797725 ID=cds.MS.gene073433.t1;Parent=MS.gene073433.t1
Gene Sequence

>MS.gene073433

ATGCTCAAAGCATTTCTCTGTCGCAATGCTTTTGGCATATCAAATTACTCAACAACACTCAGATTCCTTACCACTACTACCACTTCACACCCTTTCGCTGTGTCTTATCTCATCGATAAATTCGGATTCTCACATGAATTCGCACTCAAAGCTTCCAAACAGCTTTATTTCAAAACCTCACAAAAACCTGATTCAGTTCTCAACTTCTTCAAAATTCACGGTTTCACCGACTCAGATATTCTCAACATCATCAAAAGAGAACCATGGCTTCTTTCCTGCGATACCCACAAAAGAATTCTCCCAAAGTTTCAATTTTTACTCTCCAAAGGTGCTTCTACCTCTGACATTGTCCGCATGGTTAGTGGTAACCCTAAGTTCTTGGAATTAAGCTTGAAGAATCATGAAATTAAGTTTGAATTTTTTCTATCCAAAGGTGCTTCTTCATCTGATATTGTTTCATTGTTAACTGCATACCCTGATATTTTACAAACTAGCTTTGAGAAACGAATAATCCCTCTTTTTGAATTGTTAAGTAGGTTTTTGAAAACCGACAAGGATATCATTCTCTGCTTAATTCGACATTCAAAGTCGTTTATTATTAGCCCACATCGCCTTATTGTGGCTAATATCAATTTGATGACTGATTTTGGAGTTTGTGATTCTACCATTGCTAAATTGCTTCAGAAAAAGCCATCTATATTTGGTTCATCTGATTTGATTAAGTCATTAGAGGAAGTTAAGTGTTTAGGGTTTGATCCTTCAACGACTACTTTTAGGGTTGCTTTGGCAGCCAAGATATTTATGAGTAAAAAATTTTGGGATGAGAAAGTTGACGTTTTTAAGAAATGGGGTTGGTCTGATGAAGATGTTATTCGAGCATTTAGGTGTCAGCCTATTTCGATGTTGACTTCAATTGAAAAGATTAATTTGTTGATGAGTTTTTGGGTCAATCAATTGGGTCGGAATTCCTTGGAACTTACTAAATGTCCAATTATGTTTGGTTATAGTTTACCTAAAAGGATCATTCCAAGGGCATCAGTTTTGCAATTTCTATTTATGAAAGGTTTGCGAGAAAAGAATGCAAGCTCAGTTACACCATTTACTTATTCTGAGAAATTGTTCTTGAGCAAGTTTGTTTTCTTCTTTAAGGAGGAGTCTGATTATCTATTAAAGCTATATGAGGAAAAAATTAAACTTGCATGCACAAAGGAAAACAATGGCATGCCATTCGCTTAGTATGTGATTTCGTATTCTTCGTTTGTAATCTAACCTTAGCTTGTTAGTTTTTAAAATTGATAGAGGATGATCTAGCTGACTTGTTTTATTTTCTAACCCAGATCAGAGTGCCAGAGTTGGTGATAATAATACCTTATGATTTATCATGCTTTATAACTAGTAGATATAGAAAAGCTTAAATGGTCTTGCATTGATCTGGTAAGGGAATGTTTTCTCCTTGTCTTAGTTCTCTTTCCATGTGTGTTTGATCAAGAATACATAGTGGTATAAACAAACTATGTAGGCAGGTCTGATTTAAACTTTAAGCTTGAGATTATTAAGTACTTTTCCTAGCTGCTTTTCCTTTGGTTCTCCATACATTATCTTTTTAATCCCTATCACCTTGTTTTTGCTAGTATCAATTTGATGACTGGTTTTTGAGTTTGCGATTCTACCATTGCTAGATTGCTTCTAGAAAGGCCATCTATATTTGGTCCAACTGGTTTGATTAGGTCATTGGAGGAAGTTAAGGGTTTGGGGTTTGGTCCTTCATTGGCTACTTTTGGGGCTTCTTTGATAGCCAAGAAATGTATGAGTAAAACATGTTGGGATGAGAAAGTCGATGTCTTTGAGAAACGAGGTTGGTCTGATGAAGTTTTTTCCCAAGCATTTAGGTTGCAGTCTAGTTTGATGTTGGCTTCAGTTCATAAGTTTAATTTGGATATGAGTTTTTGGGTCAATCTATTGGGTTAGAACTCCTTGGCACTTGTTTAAAGGCCACATATTTTTGGTTTAAGTTTGCAGAAAAGGATCATTCCAAGGGCATTGGTTGTGCAATATCTTCTGATGAAAGTTTGAGGAAAAAGATTTCAAGATTAGCTAAACCATTTACTTATTCCACCAAATTGTTCTTGAGCAAGTTTGTCTTTAAGGAGGAGTCTGATTATCTATTATTGCTATATATGAGGAAAAAATGAAACTTGCAAATACAAAGGAGAACAATGGCATGCCTTCTACCAAATGTGTAACTTGTTAATCTTCTTCTTTTGGAATTTGAGCTTGTTCCTTCTTTGATTTGAAGTACTTATTTTGTCTAGGACAGTATAGTGGTTACTGGTTAGTGCAGTTGCCTAGGATAGTATAGTACTTATTTTAAAACTAACAAGGATACAATTGTTTGCTTAATTCGACATTCGAAATGGGTTGCTATGTATCCCCATCACCTTATTGTGGCTAATATCAATCTGATGTCTGATTTTGGAGTTTCTGATTTTGTCATTTCTAGATTGCTTCAAAATAAACCATCTATATTTTGTTCAAAGGATTTGATTAAGTCATTGGAGGAAGTTAAAGGTTTAGGGTTTGATCCTTCAATCACTACTTTTGGGACTGCTTTGATAGCTGAGAAAAGTTTGAGTAAAAAACTTTGGGATGAGAAAGTTGACGTCTATAAGAAATGGGGTTGGTCTGATAAAGATGTTATTCGAATATTTAAGTTTCAGCCTTATTTGATGTTGGCTTCAATTGATAAGATTAATTTGGTGATGAATTTTTGGGTTAATCAAATGGGTTGGGATTCCTTGGCACTTGTTAAATGTACACTTATGTTTGGCTATAGTTTACATAAAAGGATCATTCCAAGGGCCTCGGTTTTGCAGTTTCTTTTGATGAAAGGTTGCGAAAAAAGAATGCAAGCTTAGTTAAACCATTTACTTATTCTGAGGATATGTTCTTGAGCAAGTATGTTTACAACATTAAGGAGGAGTCTGATTATCTCTTTAAGCTATATGAGGAAAAAATGAAATTTGCAAATACAAAGGAGAACAATGGCATGTCATCCACCAAATGGGTAAGATCTTCTGTCATCCATCTTATCTTGTTCCTTCTTTGATTTGAAGTATTTATTCTTTCTAGGCCAGGATAAGGGGTTGGTATTGTTGGCTTGTTTCATTTACTAATTTGAACTACTGTTATTTTTCGTTATCATCAATTTTAGTTGCAATTTCGATGCATAGGTCTGCGTTTAGTATATTGTAGTTACAATTTCTTTAGACCAAAGTGGTTGTTTGATTGATTTTGCGCAGAAATAGAATTGGTATCATCTTCTTCCATTAATTCATCCCCCAACCATTATTAGTTTATTACTAATCTCACACCATCATACTTTTGGGAATGTGTTATAAAAAATGGACGGAACATATTTCTTGGGAGGCTATTTCTGGTTTTAGCATGCCTTTGTCTGATGTTGGTAATGCCTTTGTCTGCAGTTGAGGTAAATTCGACCCAATACGACACAACTTGCACCGAAGAACTTTGA
Protein sequence

>MS.gene073433.t1

MLKAFLCRNAFGISNYSTTLRFLTTTTTSHPFAVSYLIDKFGFSHEFALKASKQLYFKTSQKPDSVLNFFKIHGFTDSDILNIIKREPWLLSCDTHKRILPKFQFLLSKGASTSDIVRMVSGNPKFLELSLKNHEIKFEFFLSKGASSSDIVSLLTAYPDILQTSFEKRIIPLFELLSRFLKTDKDIILCLIRHSKSFIISPHRLIVANINLMTDFGVCDSTIAKLLQKKPSIFGSSDLIKSLEEVKCLGFDPSTTTFRVALAAKIFMSKKFWDEKVDVFKKWGWSDEDVIRAFRLLLERPSIFGPTGLIRSLEEVKGLGFGPSLATFGASLIAKKCMSKTCWDEKVDVFEKREKDHSKGIGCAISSDESLRKKISRLAKPFTYSTKLFLSKLLQNKPSIFCSKDLIKSLEEVKGLGFDPSITTFGTALIAEKSLSKKLWDEKVDVYKKWGWSDKDVIRIFKFQPYLMLASIDKINLVMNFWVNQMGWDSLALVKFEVNSTQYDTTCTEEL