AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene041550

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene041550.t1 MTR_4g119580 93.617 376 23 1 1 375 1 376 0.0 690
MS.gene041550.t1 MTR_4g120380 70.027 377 100 3 1 370 1 371 0.0 521
MS.gene041550.t1 MTR_4g120380 70.225 356 93 3 1 349 1 350 1.26e-174 493
MS.gene041550.t1 MTR_4g119550 49.541 327 164 1 44 369 52 378 1.33e-110 329
MS.gene041550.t1 MTR_2g436460 48.795 332 169 1 38 368 42 373 8.22e-109 324
MS.gene041550.t1 MTR_2g437260 46.471 340 179 2 32 369 26 364 1.08e-107 322
MS.gene041550.t1 MTR_2g437040 46.765 340 177 2 32 369 31 368 3.44e-107 320
MS.gene041550.t1 MTR_4g119570 61.905 252 63 1 120 371 13 231 2.13e-103 305
MS.gene041550.t1 MTR_2g437170 46.348 356 184 3 21 369 33 388 2.97e-103 311
MS.gene041550.t1 MTR_2g437150 46.857 350 179 3 27 369 39 388 5.32e-103 310
MS.gene041550.t1 MTR_2g437080 44.086 372 201 4 1 369 1 368 2.10e-102 308
MS.gene041550.t1 MTR_2g437120 46.667 345 170 4 34 369 42 381 5.61e-102 308
MS.gene041550.t1 MTR_2g437130 44.904 363 196 2 10 369 8 369 3.59e-101 305
MS.gene041550.t1 MTR_2g437960 47.273 330 169 3 45 369 55 384 4.11e-101 305
MS.gene041550.t1 MTR_2g437020 47.384 344 172 5 31 369 29 368 5.04e-101 304
MS.gene041550.t1 MTR_2g437100 48.795 332 163 3 45 369 62 393 5.65e-101 305
MS.gene041550.t1 MTR_2g437960 47.273 330 169 3 45 369 55 384 7.63e-101 305
MS.gene041550.t1 MTR_2g437030 44.444 378 203 3 1 371 79 456 1.29e-100 306
MS.gene041550.t1 MTR_2g437200 43.883 376 172 3 32 369 22 396 2.96e-100 303
MS.gene041550.t1 MTR_2g436400 43.732 343 191 1 29 369 33 375 7.74e-99 298
MS.gene041550.t1 MTR_2g436440 45.614 342 182 2 30 369 35 374 1.35e-98 298
MS.gene041550.t1 MTR_2g437160 46.313 339 178 2 35 369 55 393 1.45e-98 299
MS.gene041550.t1 MTR_2g437240 43.536 379 172 3 32 372 25 399 7.25e-98 297
MS.gene041550.t1 MTR_2g438010 45.161 341 182 2 34 369 61 401 4.81e-97 295
MS.gene041550.t1 MTR_2g437060 43.675 332 185 1 40 369 52 383 3.82e-95 290
MS.gene041550.t1 MTR_2g437990 44.575 341 181 3 34 368 41 379 4.99e-94 288
MS.gene041550.t1 MTR_2g076320 43.314 344 182 3 34 368 41 380 2.35e-93 285
MS.gene041550.t1 MTR_2g437180 44.985 329 174 3 45 368 51 377 2.97e-91 280
MS.gene041550.t1 MTR_2g438020 42.700 363 170 2 45 369 73 435 3.91e-90 280
MS.gene041550.t1 MTR_2g437940 42.813 327 160 4 45 369 51 352 6.70e-85 263
MS.gene041550.t1 MTR_2g019810 42.042 333 179 4 44 369 32 357 3.23e-80 250
MS.gene041550.t1 MTR_2g019840 41.317 334 192 3 38 369 38 369 2.75e-78 246
MS.gene041550.t1 MTR_3g450500 32.970 367 230 5 22 373 9 374 4.18e-57 191
MS.gene041550.t1 MTR_4g007490 32.773 357 227 5 25 369 13 368 1.25e-55 187
MS.gene041550.t1 MTR_2g437090 53.947 152 70 0 218 369 5 156 3.84e-53 174
MS.gene041550.t1 MTR_2g437160 48.824 170 87 0 200 369 133 302 1.75e-50 172
MS.gene041550.t1 MTR_2g437160 47.126 87 44 1 35 119 55 141 4.84e-16 78.6
MS.gene041550.t1 MTR_8g080990 29.032 341 232 4 38 371 37 374 2.18e-38 141
MS.gene041550.t1 MTR_8g081000 27.485 342 244 3 38 375 50 391 6.63e-38 141
MS.gene041550.t1 MTR_8g081000 27.485 342 244 3 38 375 50 391 7.09e-38 140
MS.gene041550.t1 MTR_8g081000 27.515 338 241 3 38 371 50 387 9.84e-38 140
MS.gene041550.t1 MTR_2g436370 39.535 172 100 2 23 190 24 195 9.46e-32 119
MS.gene041550.t1 MTR_4g119615 94.000 50 3 0 313 362 26 75 6.23e-24 95.1
MS.gene041550.t1 MTR_3g085240 37.241 145 79 3 19 163 38 170 7.10e-17 80.1
MS.gene041550.t1 MTR_2g034600 27.273 275 176 7 80 340 215 479 4.21e-16 80.1
MS.gene041550.t1 MTR_2g034600 27.273 275 176 7 80 340 280 544 5.06e-16 79.7
MS.gene041550.t1 MTR_2g034600 27.273 275 176 7 80 340 276 540 5.87e-16 79.7
MS.gene041550.t1 MTR_3g092710 24.199 281 187 7 89 349 217 491 3.74e-14 73.9
MS.gene041550.t1 MTR_4g049400 36.842 114 68 2 33 142 38 151 4.50e-13 68.6
MS.gene041550.t1 MTR_8g012210 22.789 294 208 8 87 369 63 348 5.68e-13 70.1
MS.gene041550.t1 MTR_2g436380 33.628 113 68 3 216 328 3 108 3.44e-12 66.6
MS.gene041550.t1 MTR_2g019830 56.667 60 25 1 310 369 139 197 2.38e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene041550.t1 AT5G07900 33.728 338 208 5 44 370 69 401 2.94e-61 202
MS.gene041550.t1 AT1G21150 31.212 330 219 4 44 366 56 384 1.66e-46 163
MS.gene041550.t1 AT1G21150 31.212 330 219 4 44 366 120 448 7.24e-46 163
MS.gene041550.t1 AT1G21150 30.030 333 225 4 41 366 17 348 8.29e-45 158
MS.gene041550.t1 AT1G61980 28.338 367 222 7 44 370 52 417 8.16e-43 154
MS.gene041550.t1 AT1G61980 28.338 367 222 7 44 370 52 417 8.16e-43 154
MS.gene041550.t1 AT1G61980 28.338 367 222 7 44 370 52 417 8.16e-43 154
MS.gene041550.t1 AT1G61970 26.750 400 242 10 1 354 5 399 1.57e-37 140
MS.gene041550.t1 AT1G61970 26.750 400 242 10 1 354 5 399 1.57e-37 140
MS.gene041550.t1 AT1G61970 26.750 400 242 10 1 354 5 399 1.57e-37 140
MS.gene041550.t1 AT1G61970 26.750 400 242 10 1 354 5 399 1.57e-37 140
MS.gene041550.t1 AT1G61970 26.750 400 242 10 1 354 5 399 1.57e-37 140
MS.gene041550.t1 AT1G61970 26.750 400 242 10 1 354 5 399 1.57e-37 140
MS.gene041550.t1 AT1G61970 26.750 400 242 10 1 354 5 399 1.57e-37 140
MS.gene041550.t1 AT1G62120 27.318 399 238 10 23 371 28 424 1.17e-36 138
MS.gene041550.t1 AT1G61990 27.273 407 243 9 8 368 9 408 1.52e-34 132
MS.gene041550.t1 AT1G61990 27.273 407 243 9 8 368 9 408 1.52e-34 132
MS.gene041550.t1 AT1G61960 24.890 454 255 10 5 374 6 457 6.90e-32 125
MS.gene041550.t1 AT1G62150 25.255 392 217 8 44 360 58 448 7.89e-30 119
MS.gene041550.t1 AT5G64950 28.739 341 228 7 42 369 38 376 8.36e-30 118
MS.gene041550.t1 AT3G46950 30.196 255 170 5 33 283 38 288 8.93e-27 111
MS.gene041550.t1 AT1G62110 26.351 296 207 4 1 287 5 298 1.59e-25 107
MS.gene041550.t1 AT1G62110 32.000 100 64 1 259 354 340 439 6.43e-11 63.9
MS.gene041550.t1 AT1G62085 30.453 243 166 2 44 283 55 297 3.66e-25 106
MS.gene041550.t1 AT1G62085 30.453 243 166 2 44 283 55 297 3.66e-25 106
MS.gene041550.t1 AT1G62010 24.024 333 212 6 77 370 71 401 7.37e-25 105
MS.gene041550.t1 AT1G56380 24.658 365 225 9 42 360 25 385 3.86e-24 103
MS.gene041550.t1 AT1G56380 24.658 365 225 9 42 360 14 374 4.62e-24 102
MS.gene041550.t1 AT5G23930 28.369 282 189 7 39 314 50 324 7.11e-21 94.0
MS.gene041550.t1 AT4G14605 31.928 166 103 6 171 330 222 383 2.60e-12 68.6
MS.gene041550.t1 AT4G14605 31.928 166 103 6 171 330 222 383 2.60e-12 68.6
MS.gene041550.t1 AT1G79220 24.232 293 206 7 87 369 91 377 4.59e-11 64.3

Find 81 sgRNAs with CRISPR-Local

Find 112 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGGAGGAGATTAAGGAATT+AGG 0.197682 8.2:+10910800 MS.gene041550:CDS
TGAAGGAGGTAACTACATTT+TGG 0.211721 8.2:-10910188 None:intergenic
ATCAAGCAAGAATTTCAAAT+TGG 0.217026 8.2:-10910696 None:intergenic
GGAGGCTGTGGAGGAGATTA+AGG 0.222304 8.2:+10910793 MS.gene041550:CDS
AAATTGAAGCTTTGGCAAAA+TGG 0.249268 8.2:-10910480 None:intergenic
AACTCATCCTTCAAATAAAA+TGG 0.264656 8.2:-10911169 None:intergenic
TTGGCTATTAAAGTTATATC+AGG 0.283508 8.2:+10911234 MS.gene041550:CDS
TGGAGGAGATTAAGGAATTA+GGG 0.290150 8.2:+10910801 MS.gene041550:CDS
AACGATTCACATACCTTTGC+AGG 0.292723 8.2:-10911195 None:intergenic
TGTAGCATTGTTGGCCAAAA+AGG 0.301284 8.2:+10910850 MS.gene041550:CDS
TCCTACCTCACTAACAATTT+CGG 0.319551 8.2:+10910290 MS.gene041550:CDS
ACGAAGGAAACGAGGGTTTC+TGG 0.321312 8.2:-10910549 None:intergenic
AAGTTGATGCCTTGAAGAAC+TGG 0.332328 8.2:+10910900 MS.gene041550:CDS
CTTTGGCAAAATGGATTTGA+TGG 0.343012 8.2:-10910471 None:intergenic
ACGGTGATGATTATGTCTTC+TGG 0.353018 8.2:-10910524 None:intergenic
ATCCTTCTTCATCAAACCTT+TGG 0.363759 8.2:-10911131 None:intergenic
GGTGCTGCCAGGAGCAATAA+AGG 0.392734 8.2:-10911040 None:intergenic
TTGGGATCCTTTATTGCTCC+TGG 0.395686 8.2:+10911033 MS.gene041550:CDS
TCAAGCAAGAATTTCAAATT+GGG 0.406507 8.2:-10910695 None:intergenic
CTTCTTACCAATTCAAAAGT+AGG 0.408654 8.2:-10910596 None:intergenic
TTGGATCCAACAACTTGGTT+GGG 0.412366 8.2:+10911015 MS.gene041550:CDS
TTGAAATTCTTGCTTGATGC+TGG 0.424349 8.2:+10910701 MS.gene041550:CDS
TAACCTTATGCTACGGTCTT+CGG 0.426601 8.2:+10910967 MS.gene041550:CDS
AACCTTTGGAAAGAAGATAC+TGG 0.430985 8.2:-10911117 None:intergenic
GACGGGATCCCTGCGAATGA+TGG 0.437092 8.2:-10910432 None:intergenic
AAGGATCCCAACCAAGTTGT+TGG 0.437597 8.2:-10911021 None:intergenic
ATCAACTTTGGCATCCCATT+GGG 0.443217 8.2:-10910885 None:intergenic
GTTCTTCAAGGCATCAACTT+TGG 0.447538 8.2:-10910897 None:intergenic
TTCCAAAGGTTTGATGAAGA+AGG 0.448858 8.2:+10911129 MS.gene041550:CDS
GAAACGAGGGTTTCTGGTTA+CGG 0.455889 8.2:-10910543 None:intergenic
TGCGAATGATGGATTGTATC+TGG 0.473291 8.2:-10910421 None:intergenic
AGAATAACCCCAGTTCTTCA+AGG 0.473452 8.2:-10910909 None:intergenic
CGAAAAGCTCTGGTGCTGCC+AGG 0.473564 8.2:-10911051 None:intergenic
ATAACAGTATCGGGTTTCTC+CGG 0.477621 8.2:-10910365 None:intergenic
GGCTATCACTAAATCCCAAT+GGG 0.478420 8.2:+10910871 MS.gene041550:CDS
CATCAACTTTGGCATCCCAT+TGG 0.482441 8.2:-10910886 None:intergenic
TCGGACTTAGTATAGAGAAA+AGG 0.483597 8.2:+10911071 MS.gene041550:CDS
TGTCCGAAGACCGTAGCATA+AGG 0.485794 8.2:-10910970 None:intergenic
TTTGGATCCAACAACTTGGT+TGG 0.491206 8.2:+10911014 MS.gene041550:CDS
AGCGGTGTGGTTGCAGATGA+AGG 0.493188 8.2:-10910205 None:intergenic
TGAGAAGAGCTCTGAGACGG+TGG 0.502155 8.2:-10910160 None:intergenic
TTCTTACCAATTCAAAAGTA+GGG 0.509482 8.2:-10910595 None:intergenic
TGGCTATTAAAGTTATATCA+GGG 0.511825 8.2:+10911235 MS.gene041550:CDS
ATCCAGTATCTTCTTTCCAA+AGG 0.514435 8.2:+10911115 MS.gene041550:CDS
TTTGGCAAAATGGATTTGAT+GGG 0.517742 8.2:-10910470 None:intergenic
ATACTAAGTCCGAAAAGCTC+TGG 0.524827 8.2:-10911061 None:intergenic
GAAGACCGTAGCATAAGGTT+AGG 0.532188 8.2:-10910965 None:intergenic
CGACCATCACTAATTGTAGC+AGG 0.532661 8.2:-10910665 None:intergenic
TGGTTGATCTGAATCTGAAA+TGG 0.533288 8.2:-10910255 None:intergenic
TAGAGAAAAGGCTTAGTCCA+AGG 0.534773 8.2:+10911083 MS.gene041550:CDS
GATGGATTGTATCTGGTCAA+TGG 0.537796 8.2:-10910414 None:intergenic
AAGGTCTGCTTGTAAGCAAA+CGG 0.538087 8.2:-10910745 None:intergenic
AGATACAATCCATCATTCGC+AGG 0.541336 8.2:+10910423 MS.gene041550:CDS
TACTGGATAACTGAAGCCCT+TGG 0.548630 8.2:-10911100 None:intergenic
AGTTGATGCCTTGAAGAACT+GGG 0.549779 8.2:+10910901 MS.gene041550:CDS
GCCGAAATTGTTAGTGAGGT+AGG 0.554634 8.2:-10910291 None:intergenic
TAGGGATAATGTGTTTGTTG+AGG 0.555795 8.2:-10910577 None:intergenic
AGGCTATCACTAAATCCCAA+TGG 0.578405 8.2:+10910870 MS.gene041550:CDS
GGGTTTGAGACGAAAACGAC+GGG 0.584914 8.2:-10910449 None:intergenic
TTTCCTGCTACAATTAGTGA+TGG 0.596714 8.2:+10910662 MS.gene041550:CDS
TCTGGTCAATGGAGAAACCA+TGG 0.599326 8.2:-10910403 None:intergenic
AGGATGAGTTGTTCCTGCAA+AGG 0.601687 8.2:+10911182 MS.gene041550:CDS
CTGGTCAATGGAGAAACCAT+GGG 0.604216 8.2:-10910402 None:intergenic
AGAGAAAAGGCTTAGTCCAA+GGG 0.604964 8.2:+10911084 MS.gene041550:CDS
AGAACAAGTTGTTGAGAGAG+CGG 0.608804 8.2:-10910223 None:intergenic
GCTATTAAAGTTATATCAGG+GGG 0.615187 8.2:+10911237 MS.gene041550:CDS
TTGGCAAAATGGATTTGATG+GGG 0.615509 8.2:-10910469 None:intergenic
ATAAGCCGAAATTGTTAGTG+AGG 0.618337 8.2:-10910295 None:intergenic
GAGGGCCTAACCTTATGCTA+CGG 0.624819 8.2:+10910960 MS.gene041550:CDS
AGGTAGGAAACTGTGAAAGA+TGG 0.624924 8.2:-10910275 None:intergenic
GGCTATTAAAGTTATATCAG+GGG 0.627367 8.2:+10911236 MS.gene041550:CDS
AGTTGAGAAGAGCTCTGAGA+CGG 0.630444 8.2:-10910163 None:intergenic
AGGCTTACACGAAGGAAACG+AGG 0.635953 8.2:-10910557 None:intergenic
GGCTTACACGAAGGAAACGA+GGG 0.649598 8.2:-10910556 None:intergenic
GATACAATCCATCATTCGCA+GGG 0.650640 8.2:+10910424 MS.gene041550:CDS
GTTGATGCCTTGAAGAACTG+GGG 0.672967 8.2:+10910902 MS.gene041550:CDS
GTTTGTTGAGGCTTACACGA+AGG 0.677380 8.2:-10910565 None:intergenic
GGGGTTTGAGACGAAAACGA+CGG 0.698254 8.2:-10910450 None:intergenic
GGTGTGGTTGCAGATGAAGG+AGG 0.735727 8.2:-10910202 None:intergenic
TTGATCTGAATCTGAAATGG+CGG 0.739869 8.2:-10910252 None:intergenic
AAGTTGTTGAGAGAGCGGTG+TGG 0.835738 8.2:-10910218 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTTCATCTGTTTTGA+GGG + chr8.2:10910772-10910791 MS.gene041550:CDS 20.0%
!!! ATTTTAACTGCATTTAAAAG+AGG + chr8.2:10910941-10910960 MS.gene041550:CDS 20.0%
!!! TAATTTTTTCATCTGTTTTG+AGG + chr8.2:10910771-10910790 MS.gene041550:CDS 20.0%
!!! TTTTAACTGCATTTAAAAGA+GGG + chr8.2:10910942-10910961 MS.gene041550:CDS 20.0%
! AACTCATCCTTCAAATAAAA+TGG - chr8.2:10911172-10911191 None:intergenic 25.0%
! ACACAAAAATTGTAACTAGA+AGG - chr8.2:10910833-10910852 None:intergenic 25.0%
! ACAGATGAAAAAATTACAGA+AGG - chr8.2:10910767-10910786 None:intergenic 25.0%
! ATCAAGCAAGAATTTCAAAT+TGG - chr8.2:10910699-10910718 None:intergenic 25.0%
! TCAAGCAAGAATTTCAAATT+GGG - chr8.2:10910698-10910717 None:intergenic 25.0%
! TGGCTATTAAAGTTATATCA+GGG + chr8.2:10911235-10911254 MS.gene041550:CDS 25.0%
! TTCTTACCAATTCAAAAGTA+GGG - chr8.2:10910598-10910617 None:intergenic 25.0%
! TTGGCTATTAAAGTTATATC+AGG + chr8.2:10911234-10911253 MS.gene041550:CDS 25.0%
!!! ATCAATAGCTTTTTTATCAG+AGG - chr8.2:10910630-10910649 None:intergenic 25.0%
!!! CTTCAATTTTTAGCTTCTAA+AGG + chr8.2:10910494-10910513 MS.gene041550:CDS 25.0%
!!! TCAATAGCTTTTTTATCAGA+GGG - chr8.2:10910629-10910648 None:intergenic 25.0%
CTTCTTACCAATTCAAAAGT+AGG - chr8.2:10910599-10910618 None:intergenic 30.0%
GAAGCTAAAAATTGAAGCTT+TGG - chr8.2:10910491-10910510 None:intergenic 30.0%
GCTATTAAAGTTATATCAGG+GGG + chr8.2:10911237-10911256 MS.gene041550:CDS 30.0%
GGCTATTAAAGTTATATCAG+GGG + chr8.2:10911236-10911255 MS.gene041550:CDS 30.0%
! AAATTGAAGCTTTGGCAAAA+TGG - chr8.2:10910483-10910502 None:intergenic 30.0%
! CAATTTTTGTGTAGCATTGT+TGG + chr8.2:10910841-10910860 MS.gene041550:CDS 30.0%
! TTTGGCAAAATGGATTTGAT+GGG - chr8.2:10910473-10910492 None:intergenic 30.0%
!! AACTGCACCATTTTATTTGA+AGG + chr8.2:10911162-10911181 MS.gene041550:CDS 30.0%
!! CATTATCCCTACTTTTGAAT+TGG + chr8.2:10910589-10910608 MS.gene041550:CDS 30.0%
AAAAAGGCGATAACAGTATC+GGG - chr8.2:10910377-10910396 None:intergenic 35.0%
ATAAGCCGAAATTGTTAGTG+AGG - chr8.2:10910298-10910317 None:intergenic 35.0%
ATCCAGTATCTTCTTTCCAA+AGG + chr8.2:10911115-10911134 MS.gene041550:CDS 35.0%
ATCCTTCTTCATCAAACCTT+TGG - chr8.2:10911134-10911153 None:intergenic 35.0%
ATTAAAGTTATATCAGGGGG+AGG + chr8.2:10911240-10911259 MS.gene041550:CDS 35.0%
GAAAAAGGCGATAACAGTAT+CGG - chr8.2:10910378-10910397 None:intergenic 35.0%
TCCTACCTCACTAACAATTT+CGG + chr8.2:10910290-10910309 MS.gene041550:CDS 35.0%
TCGGACTTAGTATAGAGAAA+AGG + chr8.2:10911071-10911090 MS.gene041550:CDS 35.0%
TGGAGGAGATTAAGGAATTA+GGG + chr8.2:10910801-10910820 MS.gene041550:CDS 35.0%
TGGTTGATCTGAATCTGAAA+TGG - chr8.2:10910258-10910277 None:intergenic 35.0%
TTAAAGTTATATCAGGGGGA+GGG + chr8.2:10911241-10911260 MS.gene041550:CDS 35.0%
TTCCAAAGGTTTGATGAAGA+AGG + chr8.2:10911129-10911148 MS.gene041550:CDS 35.0%
TTGAAATTCTTGCTTGATGC+TGG + chr8.2:10910701-10910720 MS.gene041550:CDS 35.0%
TTTCCTGCTACAATTAGTGA+TGG + chr8.2:10910662-10910681 MS.gene041550:CDS 35.0%
! AACCTTTGGAAAGAAGATAC+TGG - chr8.2:10911120-10911139 None:intergenic 35.0%
! AAGGTATGTGAATCGTTTTG+AGG + chr8.2:10911201-10911220 MS.gene041550:CDS 35.0%
! CTTTGGCAAAATGGATTTGA+TGG - chr8.2:10910474-10910493 None:intergenic 35.0%
! GAAGGAGGTAACTACATTTT+GGG - chr8.2:10910190-10910209 None:intergenic 35.0%
! GGATTTAGTGATAGCCTTTT+TGG - chr8.2:10910867-10910886 None:intergenic 35.0%
! TAGGGATAATGTGTTTGTTG+AGG - chr8.2:10910580-10910599 None:intergenic 35.0%
! TGAAGGAGGTAACTACATTT+TGG - chr8.2:10910191-10910210 None:intergenic 35.0%
! TTGATCTGAATCTGAAATGG+CGG - chr8.2:10910255-10910274 None:intergenic 35.0%
! TTGGCAAAATGGATTTGATG+GGG - chr8.2:10910472-10910491 None:intergenic 35.0%
!! ACGACTTCGTTTTAATACTC+CGG + chr8.2:10910346-10910365 MS.gene041550:CDS 35.0%
!!! GAAACCATGGGTTTTGAAAA+AGG - chr8.2:10910393-10910412 None:intergenic 35.0%
!!! TTTTTCATCTGTTTTGAGGG+AGG + chr8.2:10910775-10910794 MS.gene041550:CDS 35.0%
AACGATTCACATACCTTTGC+AGG - chr8.2:10911198-10911217 None:intergenic 40.0%
AAGGTCTGCTTGTAAGCAAA+CGG - chr8.2:10910748-10910767 None:intergenic 40.0%
ACGGTGATGATTATGTCTTC+TGG - chr8.2:10910527-10910546 None:intergenic 40.0%
AGAACAAGTTGTTGAGAGAG+CGG - chr8.2:10910226-10910245 None:intergenic 40.0%
AGAATAACCCCAGTTCTTCA+AGG - chr8.2:10910912-10910931 None:intergenic 40.0%
AGAGAAAAGGCTTAGTCCAA+GGG + chr8.2:10911084-10911103 MS.gene041550:CDS 40.0%
AGATACAATCCATCATTCGC+AGG + chr8.2:10910423-10910442 MS.gene041550:CDS 40.0%
AGGCTATCACTAAATCCCAA+TGG + chr8.2:10910870-10910889 MS.gene041550:CDS 40.0%
AGGTAGGAAACTGTGAAAGA+TGG - chr8.2:10910278-10910297 None:intergenic 40.0%
ATACTAAGTCCGAAAAGCTC+TGG - chr8.2:10911064-10911083 None:intergenic 40.0%
ATCAACTTTGGCATCCCATT+GGG - chr8.2:10910888-10910907 None:intergenic 40.0%
GATACAATCCATCATTCGCA+GGG + chr8.2:10910424-10910443 MS.gene041550:CDS 40.0%
GGCTATCACTAAATCCCAAT+GGG + chr8.2:10910871-10910890 MS.gene041550:CDS 40.0%
GTGGAGGAGATTAAGGAATT+AGG + chr8.2:10910800-10910819 MS.gene041550:CDS 40.0%
TAACCTTATGCTACGGTCTT+CGG + chr8.2:10910967-10910986 MS.gene041550:CDS 40.0%
TAGAGAAAAGGCTTAGTCCA+AGG + chr8.2:10911083-10911102 MS.gene041550:CDS 40.0%
TGTAGCATTGTTGGCCAAAA+AGG + chr8.2:10910850-10910869 MS.gene041550:CDS 40.0%
TTGGATCCAACAACTTGGTT+GGG + chr8.2:10911015-10911034 MS.gene041550:CDS 40.0%
TTTGGATCCAACAACTTGGT+TGG + chr8.2:10911014-10911033 MS.gene041550:CDS 40.0%
! AGTTGATGCCTTGAAGAACT+GGG + chr8.2:10910901-10910920 MS.gene041550:CDS 40.0%
! ATAACAGTATCGGGTTTCTC+CGG - chr8.2:10910368-10910387 None:intergenic 40.0%
! GTTCTTCAAGGCATCAACTT+TGG - chr8.2:10910900-10910919 None:intergenic 40.0%
! TCAATGCAGTGATGCGTTTT+TGG + chr8.2:10910996-10911015 MS.gene041550:CDS 40.0%
!! AAGTTGATGCCTTGAAGAAC+TGG + chr8.2:10910900-10910919 MS.gene041550:CDS 40.0%
!! CGTTTTTGGATCCAACAACT+TGG + chr8.2:10911010-10911029 MS.gene041550:CDS 40.0%
!! GATGGATTGTATCTGGTCAA+TGG - chr8.2:10910417-10910436 None:intergenic 40.0%
!! TGCGAATGATGGATTGTATC+TGG - chr8.2:10910424-10910443 None:intergenic 40.0%
!!! ATCGCCTTTTTCAAAACCCA+TGG + chr8.2:10910386-10910405 MS.gene041550:CDS 40.0%
!!! GTATGTGAATCGTTTTGAGG+AGG + chr8.2:10911204-10911223 MS.gene041550:CDS 40.0%
AAGGATCCCAACCAAGTTGT+TGG - chr8.2:10911024-10911043 None:intergenic 45.0%
AGGATGAGTTGTTCCTGCAA+AGG + chr8.2:10911182-10911201 MS.gene041550:CDS 45.0%
CATCAACTTTGGCATCCCAT+TGG - chr8.2:10910889-10910908 None:intergenic 45.0%
CGACCATCACTAATTGTAGC+AGG - chr8.2:10910668-10910687 None:intergenic 45.0%
CTGGTCAATGGAGAAACCAT+GGG - chr8.2:10910405-10910424 None:intergenic 45.0%
GAAGACCGTAGCATAAGGTT+AGG - chr8.2:10910968-10910987 None:intergenic 45.0%
GCCGAAATTGTTAGTGAGGT+AGG - chr8.2:10910294-10910313 None:intergenic 45.0%
GTTGATGCCTTGAAGAACTG+GGG + chr8.2:10910902-10910921 MS.gene041550:CDS 45.0%
TACTGGATAACTGAAGCCCT+TGG - chr8.2:10911103-10911122 None:intergenic 45.0%
TCTGGTCAATGGAGAAACCA+TGG - chr8.2:10910406-10910425 None:intergenic 45.0%
TTGGGATCCTTTATTGCTCC+TGG + chr8.2:10911033-10911052 MS.gene041550:CDS 45.0%
! GTTTGTTGAGGCTTACACGA+AGG - chr8.2:10910568-10910587 None:intergenic 45.0%
!! AGTTGAGAAGAGCTCTGAGA+CGG - chr8.2:10910166-10910185 None:intergenic 45.0%
!! GAAACGAGGGTTTCTGGTTA+CGG - chr8.2:10910546-10910565 None:intergenic 45.0%
!!! GTTTTGAGGAGGAAGCATCT+TGG + chr8.2:10911215-10911234 MS.gene041550:CDS 45.0%
AAGTTGTTGAGAGAGCGGTG+TGG - chr8.2:10910221-10910240 None:intergenic 50.0%
ACGAAGGAAACGAGGGTTTC+TGG - chr8.2:10910552-10910571 None:intergenic 50.0%
AGGCTTACACGAAGGAAACG+AGG - chr8.2:10910560-10910579 None:intergenic 50.0%
GAGGGCCTAACCTTATGCTA+CGG + chr8.2:10910960-10910979 MS.gene041550:CDS 50.0%
GGCTTACACGAAGGAAACGA+GGG - chr8.2:10910559-10910578 None:intergenic 50.0%
TGTCCGAAGACCGTAGCATA+AGG - chr8.2:10910973-10910992 None:intergenic 50.0%
! GGGGTTTGAGACGAAAACGA+CGG - chr8.2:10910453-10910472 None:intergenic 50.0%
! GGGTTTGAGACGAAAACGAC+GGG - chr8.2:10910452-10910471 None:intergenic 50.0%
!!! ATCTGTTTTGAGGGAGGCTG+TGG + chr8.2:10910781-10910800 MS.gene041550:CDS 50.0%
AGCGGTGTGGTTGCAGATGA+AGG - chr8.2:10910208-10910227 None:intergenic 55.0%
GGAGGCTGTGGAGGAGATTA+AGG + chr8.2:10910793-10910812 MS.gene041550:CDS 55.0%
GGTGTGGTTGCAGATGAAGG+AGG - chr8.2:10910205-10910224 None:intergenic 55.0%
! CTGGCAGCACCAGAGCTTTT+CGG + chr8.2:10911052-10911071 MS.gene041550:CDS 55.0%
! GGTGCTGCCAGGAGCAATAA+AGG - chr8.2:10911043-10911062 None:intergenic 55.0%
!! TGAGAAGAGCTCTGAGACGG+TGG - chr8.2:10910163-10910182 None:intergenic 55.0%
!!! TGTTTTGAGGGAGGCTGTGG+AGG + chr8.2:10910784-10910803 MS.gene041550:CDS 55.0%
GACGGGATCCCTGCGAATGA+TGG - chr8.2:10910435-10910454 None:intergenic 60.0%
!! CGAAAAGCTCTGGTGCTGCC+AGG - chr8.2:10911054-10911073 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 10910149 10911279 10910149 ID=MS.gene041550
chr8.2 mRNA 10910149 10911279 10910149 ID=MS.gene041550.t1;Parent=MS.gene041550
chr8.2 exon 10910149 10911279 10910149 ID=MS.gene041550.t1.exon1;Parent=MS.gene041550.t1
chr8.2 CDS 10910149 10911279 10910149 ID=cds.MS.gene041550.t1;Parent=MS.gene041550.t1
Gene Sequence

>MS.gene041550

ATGATTCACTGCCACCGTCTCAGAGCTCTTCTCAACTTCCCAAAATGTAGTTACCTCCTTCATCTGCAACCACACCGCTCTCTCAACAACTTGTTCTTCTCTACCGCCATTTCAGATTCAGATCAACCATCTTTCACAGTTTCCTACCTCACTAACAATTTCGGCTTATCTTCACAAGATGCTCTCAAAGCGTCTAAACGACTTCGTTTTAATACTCCGGAGAAACCCGATACTGTTATCGCCTTTTTCAAAACCCATGGTTTCTCCATTGACCAGATACAATCCATCATTCGCAGGGATCCCGTCGTTTTCGTCTCAAACCCCATCAAATCCATTTTGCCAAAGCTTCAATTTTTAGCTTCTAAAGGCGTTTCTCCAGAAGACATAATCATCACCGTAACCAGAAACCCTCGTTTCCTTCGTGTAAGCCTCAACAAACACATTATCCCTACTTTTGAATTGGTAAGAAGTTTCTGTCCCTCTGATAAAAAAGCTATTGATTGTGTAATTGCATTTCCTGCTACAATTAGTGATGGTCGCATGAAACCCAATTTGAAATTCTTGCTTGATGCTGGTGTCACTCGTTCAAGTATTTACCGTTTGCTTACAAGCAGACCTTCTGTAATTTTTTCATCTGTTTTGAGGGAGGCTGTGGAGGAGATTAAGGAATTAGGGTTTCATCCTTCTAGTTACAATTTTTGTGTAGCATTGTTGGCCAAAAAGGCTATCACTAAATCCCAATGGGATGCCAAAGTTGATGCCTTGAAGAACTGGGGTTATTCTGAAGATGCAATTTTAACTGCATTTAAAAGAGGGCCTAACCTTATGCTACGGTCTTCGGACAAACTCAATGCAGTGATGCGTTTTTGGATCCAACAACTTGGTTGGGATCCTTTATTGCTCCTGGCAGCACCAGAGCTTTTCGGACTTAGTATAGAGAAAAGGCTTAGTCCAAGGGCTTCAGTTATCCAGTATCTTCTTTCCAAAGGTTTGATGAAGAAGGATGCTAGCTTAACTGCACCATTTTATTTGAAGGATGAGTTGTTCCTGCAAAGGTATGTGAATCGTTTTGAGGAGGAAGCATCTTGGCTATTAAAGTTATATCAGGGGGAGGGTGCTCGCATTCGCTGA
Protein sequence

>MS.gene041550.t1

MIHCHRLRALLNFPKCSYLLHLQPHRSLNNLFFSTAISDSDQPSFTVSYLTNNFGLSSQDALKASKRLRFNTPEKPDTVIAFFKTHGFSIDQIQSIIRRDPVVFVSNPIKSILPKLQFLASKGVSPEDIIITVTRNPRFLRVSLNKHIIPTFELVRSFCPSDKKAIDCVIAFPATISDGRMKPNLKFLLDAGVTRSSIYRLLTSRPSVIFSSVLREAVEEIKELGFHPSSYNFCVALLAKKAITKSQWDAKVDALKNWGYSEDAILTAFKRGPNLMLRSSDKLNAVMRFWIQQLGWDPLLLLAAPELFGLSIEKRLSPRASVIQYLLSKGLMKKDASLTAPFYLKDELFLQRYVNRFEEEASWLLKLYQGEGARIR