AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene00383

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00383.t1 MTR_2g437990 87.097 403 50 2 1 402 1 402 0.0 708
MS.gene00383.t1 MTR_2g076320 85.360 403 58 1 1 402 1 403 0.0 686
MS.gene00383.t1 MTR_2g438010 78.164 403 87 1 1 402 21 423 0.0 635
MS.gene00383.t1 MTR_2g437120 77.444 399 81 3 1 394 1 395 0.0 606
MS.gene00383.t1 MTR_2g437150 73.086 405 101 3 1 397 1 405 0.0 585
MS.gene00383.t1 MTR_2g437170 72.927 410 101 4 1 400 1 410 0.0 584
MS.gene00383.t1 MTR_2g437940 74.201 407 67 4 1 402 1 374 0.0 580
MS.gene00383.t1 MTR_2g437960 70.123 405 117 2 1 401 1 405 0.0 559
MS.gene00383.t1 MTR_2g437960 70.223 403 116 2 1 399 1 403 0.0 557
MS.gene00383.t1 MTR_2g437160 69.674 399 115 4 1 395 12 408 0.0 548
MS.gene00383.t1 MTR_2g437180 69.154 402 112 3 1 397 1 395 0.0 536
MS.gene00383.t1 MTR_2g437100 70.466 386 107 2 4 382 10 395 0.0 533
MS.gene00383.t1 MTR_2g437200 63.384 396 103 4 25 382 7 398 2.14e-164 467
MS.gene00383.t1 MTR_2g437240 61.440 389 113 2 48 401 31 417 1.32e-159 456
MS.gene00383.t1 MTR_2g438020 61.757 387 110 3 48 399 70 453 2.02e-159 458
MS.gene00383.t1 MTR_2g437130 62.772 368 128 3 31 398 29 387 3.35e-155 443
MS.gene00383.t1 MTR_2g436440 52.174 368 169 2 27 394 28 388 4.35e-126 369
MS.gene00383.t1 MTR_2g437080 51.381 362 169 2 31 392 26 380 1.73e-124 365
MS.gene00383.t1 MTR_2g437020 52.732 366 163 4 27 390 21 378 7.41e-123 361
MS.gene00383.t1 MTR_2g437060 50.138 363 174 2 28 390 38 393 4.58e-117 347
MS.gene00383.t1 MTR_2g437040 50.413 363 173 2 32 394 27 382 4.91e-115 341
MS.gene00383.t1 MTR_2g437030 48.087 366 179 2 29 394 114 468 5.43e-111 333
MS.gene00383.t1 MTR_2g436400 48.266 346 172 2 41 386 43 381 1.55e-107 322
MS.gene00383.t1 MTR_2g436460 51.576 349 159 6 38 385 40 379 7.06e-105 315
MS.gene00383.t1 MTR_2g437260 44.301 386 196 7 4 387 3 371 6.04e-104 313
MS.gene00383.t1 MTR_4g119550 44.540 348 187 3 44 390 46 388 1.91e-101 306
MS.gene00383.t1 MTR_4g120380 47.076 342 168 3 42 379 37 369 1.12e-97 296
MS.gene00383.t1 MTR_4g119580 45.640 344 174 3 40 379 35 369 3.15e-94 287
MS.gene00383.t1 MTR_4g120380 47.678 323 156 3 42 360 37 350 3.54e-93 286
MS.gene00383.t1 MTR_2g437160 58.952 229 83 2 170 395 97 317 2.99e-88 270
MS.gene00383.t1 MTR_2g437160 45.455 253 99 9 1 231 12 247 1.86e-48 167
MS.gene00383.t1 MTR_2g019840 39.740 385 197 9 22 387 8 376 1.73e-78 247
MS.gene00383.t1 MTR_2g019810 43.284 335 179 6 51 382 33 359 2.06e-76 241
MS.gene00383.t1 MTR_2g437090 53.216 171 80 0 225 395 1 171 2.50e-58 188
MS.gene00383.t1 MTR_3g450500 30.685 365 245 4 18 379 10 369 4.26e-49 171
MS.gene00383.t1 MTR_4g119570 38.462 247 116 2 132 378 17 227 2.19e-45 156
MS.gene00383.t1 MTR_4g049400 54.667 150 67 1 1 149 1 150 5.98e-45 155
MS.gene00383.t1 MTR_4g007490 29.333 375 250 7 10 379 3 367 8.14e-44 156
MS.gene00383.t1 MTR_2g436370 48.227 141 71 1 41 181 40 178 6.14e-36 131
MS.gene00383.t1 MTR_8g081000 28.477 302 212 2 80 379 85 384 6.85e-31 122
MS.gene00383.t1 MTR_8g081000 26.994 326 233 3 80 402 85 408 9.07e-31 122
MS.gene00383.t1 MTR_8g081000 28.477 302 212 2 80 379 85 384 1.05e-30 122
MS.gene00383.t1 MTR_8g080990 27.852 298 211 2 81 376 73 368 1.11e-28 115
MS.gene00383.t1 MTR_3g085240 55.556 90 23 1 284 373 176 248 2.85e-22 95.5
MS.gene00383.t1 MTR_3g085240 43.307 127 59 4 48 172 56 171 3.08e-19 87.0
MS.gene00383.t1 MTR_2g436380 53.333 60 28 0 225 284 1 60 5.70e-14 72.4
MS.gene00383.t1 MTR_2g034600 23.922 255 171 7 88 330 276 519 4.58e-11 64.7
MS.gene00383.t1 MTR_2g034600 23.922 255 171 7 88 330 280 523 4.77e-11 64.7
MS.gene00383.t1 MTR_2g034600 23.320 253 175 6 88 330 215 458 5.33e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00383.t1 AT5G07900 32.530 332 219 4 51 379 70 399 3.54e-52 179
MS.gene00383.t1 AT1G21150 30.571 350 232 4 37 377 37 384 2.47e-50 174
MS.gene00383.t1 AT1G21150 30.571 350 232 4 37 377 101 448 9.41e-50 174
MS.gene00383.t1 AT1G21150 31.098 328 221 3 53 377 23 348 1.91e-48 168
MS.gene00383.t1 AT1G61980 28.889 360 198 8 51 365 53 399 3.20e-35 134
MS.gene00383.t1 AT1G61980 28.889 360 198 8 51 365 53 399 3.20e-35 134
MS.gene00383.t1 AT1G61980 28.889 360 198 8 51 365 53 399 3.20e-35 134
MS.gene00383.t1 AT1G61990 29.076 368 210 7 51 379 53 408 3.59e-33 129
MS.gene00383.t1 AT1G61990 29.076 368 210 7 51 379 53 408 3.59e-33 129
MS.gene00383.t1 AT1G61970 27.374 358 206 9 51 365 53 399 5.57e-31 123
MS.gene00383.t1 AT1G61970 27.374 358 206 9 51 365 53 399 5.57e-31 123
MS.gene00383.t1 AT1G61970 27.374 358 206 9 51 365 53 399 5.57e-31 123
MS.gene00383.t1 AT1G61970 27.374 358 206 9 51 365 53 399 5.57e-31 123
MS.gene00383.t1 AT1G61970 27.374 358 206 9 51 365 53 399 5.57e-31 123
MS.gene00383.t1 AT1G61970 27.374 358 206 9 51 365 53 399 5.57e-31 123
MS.gene00383.t1 AT1G61970 27.374 358 206 9 51 365 53 399 5.57e-31 123
MS.gene00383.t1 AT5G64950 28.997 369 251 7 20 379 9 375 1.86e-30 121
MS.gene00383.t1 AT3G46950 28.044 271 183 4 30 297 30 291 2.24e-25 107
MS.gene00383.t1 AT1G61960 29.644 253 159 4 51 295 53 294 3.72e-24 104
MS.gene00383.t1 AT1G62120 26.444 329 201 7 51 342 57 381 5.39e-24 103
MS.gene00383.t1 AT1G62085 27.957 279 178 5 25 294 33 297 2.50e-22 99.0
MS.gene00383.t1 AT1G62085 27.957 279 178 5 25 294 33 297 2.50e-22 99.0
MS.gene00383.t1 AT1G62110 26.786 280 182 5 25 295 30 295 1.89e-20 93.2
MS.gene00383.t1 AT1G62150 27.626 257 158 6 51 294 59 300 1.98e-19 90.1
MS.gene00383.t1 AT5G23930 23.544 395 218 13 23 342 23 408 1.11e-18 88.2
MS.gene00383.t1 AT1G62010 23.203 306 186 5 77 342 63 359 5.63e-17 82.8

Find 60 sgRNAs with CRISPR-Local

Find 89 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAATTTGATGTCTGATTT+TGG 0.116384 2.2:-51184475 MS.gene00383:CDS
TCCTACCTTATCAACAATTT+TGG 0.146770 2.2:-51184901 MS.gene00383:CDS
TTTCTTATAGTTTACCTAAA+AGG 0.248707 2.2:-51184105 MS.gene00383:CDS
TTGGAGGAAGTTAAGTGTTT+AGG 0.257551 2.2:-51184376 MS.gene00383:CDS
TGGAGGAAGTTAAGTGTTTA+GGG 0.262883 2.2:-51184375 MS.gene00383:CDS
ATAACTGAATCAGGATTATC+TGG 0.265371 2.2:+51184820 None:intergenic
ATGCTGCATTTGAGTGAAAA+TGG 0.281235 2.2:+51184967 None:intergenic
AAGCTGTTATTCGAGTATTT+AGG 0.318007 2.2:-51184240 MS.gene00383:CDS
TTACACCTAAAACAAGATTC+TGG 0.322577 2.2:+51185037 None:intergenic
AAATGATTTGATTAAGTCAT+TGG 0.345760 2.2:-51184395 MS.gene00383:CDS
TTGCTAGACTGCTTCTTAGA+AGG 0.348343 2.2:-51184435 MS.gene00383:CDS
AATGTATGAGTAAAATACTT+TGG 0.370949 2.2:-51184306 MS.gene00383:CDS
GATAGAAAATATTCAAACTT+TGG 0.371358 2.2:+51184697 None:intergenic
TTCAATTGATAAGATTAATC+TGG 0.385597 2.2:-51184194 MS.gene00383:CDS
TATTGCAAAATTGAGGCTCT+TGG 0.390283 2.2:+51184076 None:intergenic
GCAAACAATGGTATCCTTGT+TGG 0.390955 2.2:+51184555 None:intergenic
AAACTACTTTGTAAAATTTG+AGG 0.407296 2.2:+51184628 None:intergenic
AGCTCAATACATTACACATT+TGG 0.408913 2.2:+51183871 None:intergenic
AACTACTTTGTAAAATTTGA+GGG 0.411226 2.2:+51184629 None:intergenic
TTGGGTTAATCAAATGGGTT+GGG 0.420431 2.2:-51184161 MS.gene00383:CDS
TCATTTGAACAAAATATAGA+TGG 0.424258 2.2:+51184412 None:intergenic
ATGTATGAGTAAAATACTTT+GGG 0.434480 2.2:-51184305 MS.gene00383:CDS
AAGAAGGTGATAACTGAATC+AGG 0.441680 2.2:+51184811 None:intergenic
GTCCGAAAAGCGGTTGTTGA+AGG 0.442684 2.2:+51184346 None:intergenic
TCAAATGGGTTGGGATCCCT+TGG 0.453367 2.2:-51184152 MS.gene00383:CDS
TTTGGGTTAATCAAATGGGT+TGG 0.454317 2.2:-51184162 MS.gene00383:CDS
AGAAACCAAAATTGTTGATA+AGG 0.456851 2.2:+51184896 None:intergenic
CAAATACAACGGAGAACAAT+GGG 0.473276 2.2:-51183904 MS.gene00383:CDS
TTTCATCACAACCCCACAAA+AGG 0.473339 2.2:-51184726 MS.gene00383:CDS
TACACCTAAAACAAGATTCT+GGG 0.489792 2.2:+51185038 None:intergenic
ATCAGATGAAGAAGCACCAT+TGG 0.503335 2.2:+51184675 None:intergenic
AAACTATAAGAAAACATAAG+TGG 0.525922 2.2:+51184115 None:intergenic
ATTAGCCTCTAGAACATGAT+GGG 0.526186 2.2:+51184498 None:intergenic
TACATTACACATTTGGTGGA+TGG 0.530490 2.2:+51183878 None:intergenic
CAAAAGATATTGCAAAATTG+AGG 0.532650 2.2:+51184069 None:intergenic
TCAATACATTACACATTTGG+TGG 0.533942 2.2:+51183874 None:intergenic
CAAAGCTTTCAACAACAAGC+AGG 0.537532 2.2:-51184857 MS.gene00383:CDS
TGCTGCATTTGAGTGAAAAT+GGG 0.540143 2.2:+51184968 None:intergenic
ATATTCTCAGAATAAGCAAA+TGG 0.549537 2.2:+51184007 None:intergenic
TATTAGCCTCTAGAACATGA+TGG 0.549790 2.2:+51184497 None:intergenic
ATCACCTTCTTTCAAAACCA+TGG 0.553067 2.2:-51184799 MS.gene00383:CDS
ATAAGGTAGGATACAGCAAA+TGG 0.555873 2.2:+51184913 None:intergenic
ACCAAAATTGTTGATAAGGT+AGG 0.556095 2.2:+51184900 None:intergenic
TGATTTGATTAAGTCATTGG+AGG 0.568604 2.2:-51184392 MS.gene00383:CDS
TCCGAAAAGCGGTTGTTGAA+GGG 0.570224 2.2:+51184347 None:intergenic
TGGAGATTTAGTAAGTTCCA+AGG 0.571492 2.2:+51184135 None:intergenic
ATTGAAGTCAACATCAAACT+AGG 0.571733 2.2:+51184211 None:intergenic
GCAAATACAACGGAGAACAA+TGG 0.572984 2.2:-51183905 MS.gene00383:CDS
TTATCCCCATCATGTTCTAG+AGG 0.591171 2.2:-51184503 MS.gene00383:CDS
ATTTCGAATTAAGCAAACAA+TGG 0.591852 2.2:+51184543 None:intergenic
TAACTGAATCAGGATTATCT+GGG 0.600797 2.2:+51184821 None:intergenic
GGAGATTTAGTAAGTTCCAA+GGG 0.618354 2.2:+51184136 None:intergenic
TCTAAGAAGCAGTCTAGCAA+TGG 0.630562 2.2:+51184438 None:intergenic
TCATCATCACAAAAGCACCT+TGG 0.652829 2.2:-51184753 MS.gene00383:CDS
AATGAAACTTGCAAATACAA+CGG 0.655557 2.2:-51183915 MS.gene00383:CDS
AACTGAATCAGGATTATCTG+GGG 0.659335 2.2:+51184822 None:intergenic
GTGAAAATGGGAATGAGAAG+TGG 0.664003 2.2:+51184980 None:intergenic
TTAGCCTCTAGAACATGATG+GGG 0.688598 2.2:+51184499 None:intergenic
TATCAAAGCAGTCCGAAAAG+CGG 0.690793 2.2:+51184336 None:intergenic
GGTTGTGATGAAAGTAACCA+AGG 0.737190 2.2:+51184736 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTAACAATTCAAAAAGA+GGG + chr2.2:51184347-51184366 None:intergenic 15.0%
!! AAACTACTTTGTAAAATTTG+AGG + chr2.2:51184309-51184328 None:intergenic 20.0%
!! AAACTATAAGAAAACATAAG+TGG + chr2.2:51184822-51184841 None:intergenic 20.0%
!! AAATGATTTGATTAAGTCAT+TGG - chr2.2:51184539-51184558 MS.gene00383:CDS 20.0%
!! AACTACTTTGTAAAATTTGA+GGG + chr2.2:51184308-51184327 None:intergenic 20.0%
!! AATGTATGAGTAAAATACTT+TGG - chr2.2:51184628-51184647 MS.gene00383:CDS 20.0%
!! ATGTATGAGTAAAATACTTT+GGG - chr2.2:51184629-51184648 MS.gene00383:CDS 20.0%
!! CTATTTAACAATTCAAAAAG+AGG + chr2.2:51184348-51184367 None:intergenic 20.0%
!! GATAGAAAATATTCAAACTT+TGG + chr2.2:51184240-51184259 None:intergenic 20.0%
!! TCATTTGAACAAAATATAGA+TGG + chr2.2:51184525-51184544 None:intergenic 20.0%
!! TTCAATTGATAAGATTAATC+TGG - chr2.2:51184740-51184759 MS.gene00383:CDS 20.0%
!! TTTCTTATAGTTTACCTAAA+AGG - chr2.2:51184829-51184848 MS.gene00383:CDS 20.0%
!!! AAGTTGATGTTTTTAAGAAA+CGG - chr2.2:51184658-51184677 MS.gene00383:CDS 20.0%
!!! AATTTTTGGGTTAATCAAAT+GGG - chr2.2:51184768-51184787 MS.gene00383:CDS 20.0%
!!! CTCTTTTTGAATTGTTAAAT+AGG - chr2.2:51184346-51184365 MS.gene00383:CDS 20.0%
!!! TATTTTACTCATACATTTCT+TGG + chr2.2:51184625-51184644 None:intergenic 20.0%
!!! TCAAATTTTACAAAGTAGTT+TGG - chr2.2:51184308-51184327 MS.gene00383:CDS 20.0%
!!! TTTGAATATTTTCTATCCAA+TGG - chr2.2:51184243-51184262 MS.gene00383:CDS 20.0%
! AATGAAACTTGCAAATACAA+CGG - chr2.2:51185019-51185038 MS.gene00383:CDS 25.0%
! AGAAACCAAAATTGTTGATA+AGG + chr2.2:51184041-51184060 None:intergenic 25.0%
! ATATTCTCAGAATAAGCAAA+TGG + chr2.2:51184930-51184949 None:intergenic 25.0%
! ATTTCGAATTAAGCAAACAA+TGG + chr2.2:51184394-51184413 None:intergenic 25.0%
! CAAAAGATATTGCAAAATTG+AGG + chr2.2:51184868-51184887 None:intergenic 25.0%
!! ATCAATTTGATGTCTGATTT+TGG - chr2.2:51184459-51184478 MS.gene00383:CDS 25.0%
!! TTGCAATATCTTTTGATGAA+AGG - chr2.2:51184873-51184892 MS.gene00383:CDS 25.0%
!!! AGTTGATGTTTTTAAGAAAC+GGG - chr2.2:51184659-51184678 MS.gene00383:CDS 25.0%
!!! GAATTTTTGGGTTAATCAAA+TGG - chr2.2:51184767-51184786 MS.gene00383:CDS 25.0%
!!! TAATCTGGTGATGAATTTTT+GGG - chr2.2:51184755-51184774 MS.gene00383:CDS 25.0%
!!! TTAATCTGGTGATGAATTTT+TGG - chr2.2:51184754-51184773 MS.gene00383:CDS 25.0%
AAGCTGTTATTCGAGTATTT+AGG - chr2.2:51184694-51184713 MS.gene00383:CDS 30.0%
ATAACTGAATCAGGATTATC+TGG + chr2.2:51184117-51184136 None:intergenic 30.0%
ATTGAAGTCAACATCAAACT+AGG + chr2.2:51184726-51184745 None:intergenic 30.0%
TAACTGAATCAGGATTATCT+GGG + chr2.2:51184116-51184135 None:intergenic 30.0%
TACACCTAAAACAAGATTCT+GGG + chr2.2:51183899-51183918 None:intergenic 30.0%
TCAATACATTACACATTTGG+TGG + chr2.2:51185063-51185082 None:intergenic 30.0%
TGATTTGATTAAGTCATTGG+AGG - chr2.2:51184542-51184561 MS.gene00383:CDS 30.0%
TTACACCTAAAACAAGATTC+TGG + chr2.2:51183900-51183919 None:intergenic 30.0%
! ACCAAAATTGTTGATAAGGT+AGG + chr2.2:51184037-51184056 None:intergenic 30.0%
! ATCTTTTGATGAAAGGTTTG+CGG - chr2.2:51184880-51184899 MS.gene00383:CDS 30.0%
! GAAGTGGTTGTTGAATTTTA+AGG + chr2.2:51183941-51183960 None:intergenic 30.0%
! TCCTACCTTATCAACAATTT+TGG - chr2.2:51184033-51184052 MS.gene00383:CDS 30.0%
!! GTTGATGTTTTTAAGAAACG+GGG - chr2.2:51184660-51184679 MS.gene00383:CDS 30.0%
!!! AAAACCATGGTTTTGAAAGA+AGG + chr2.2:51184142-51184161 None:intergenic 30.0%
AACTGAATCAGGATTATCTG+GGG + chr2.2:51184115-51184134 None:intergenic 35.0%
AAGAAGGTGATAACTGAATC+AGG + chr2.2:51184126-51184145 None:intergenic 35.0%
ATAAGGTAGGATACAGCAAA+TGG + chr2.2:51184024-51184043 None:intergenic 35.0%
ATCACCTTCTTTCAAAACCA+TGG - chr2.2:51184135-51184154 MS.gene00383:CDS 35.0%
ATGCTGCATTTGAGTGAAAA+TGG + chr2.2:51183970-51183989 None:intergenic 35.0%
CAAATACAACGGAGAACAAT+GGG - chr2.2:51185030-51185049 MS.gene00383:CDS 35.0%
CTGGGAGAAAAACAATTTGT+TGG + chr2.2:51183881-51183900 None:intergenic 35.0%
GGAGATTTAGTAAGTTCCAA+GGG + chr2.2:51184801-51184820 None:intergenic 35.0%
TATTGCAAAATTGAGGCTCT+TGG + chr2.2:51184861-51184880 None:intergenic 35.0%
TGCTGCATTTGAGTGAAAAT+GGG + chr2.2:51183969-51183988 None:intergenic 35.0%
TGGAGATTTAGTAAGTTCCA+AGG + chr2.2:51184802-51184821 None:intergenic 35.0%
TGGAGGAAGTTAAGTGTTTA+GGG - chr2.2:51184559-51184578 MS.gene00383:CDS 35.0%
TGTTATCGTGTGAAAAACCA+TGG + chr2.2:51184155-51184174 None:intergenic 35.0%
TTGGAGGAAGTTAAGTGTTT+AGG - chr2.2:51184558-51184577 MS.gene00383:CDS 35.0%
! CAAGTGTGTTTTCAGCTTTA+AGG - chr2.2:51184959-51184978 MS.gene00383:CDS 35.0%
! TACATTACACATTTGGTGGA+TGG + chr2.2:51185059-51185078 None:intergenic 35.0%
! TAGGTTTTCGAAAACCAACA+AGG - chr2.2:51184365-51184384 MS.gene00383:CDS 35.0%
! TTGGGTTAATCAAATGGGTT+GGG - chr2.2:51184773-51184792 MS.gene00383:CDS 35.0%
! TTTGGGTTAATCAAATGGGT+TGG - chr2.2:51184772-51184791 MS.gene00383:CDS 35.0%
!! ATGTTTTTAAGAAACGGGGT+TGG - chr2.2:51184664-51184683 MS.gene00383:CDS 35.0%
!! ATTAGCCTCTAGAACATGAT+GGG + chr2.2:51184439-51184458 None:intergenic 35.0%
!! TATTAGCCTCTAGAACATGA+TGG + chr2.2:51184440-51184459 None:intergenic 35.0%
!!! TTCTCCCAGAATCTTGTTTT+AGG - chr2.2:51183892-51183911 MS.gene00383:CDS 35.0%
CAAAGCTTTCAACAACAAGC+AGG - chr2.2:51184077-51184096 MS.gene00383:CDS 40.0%
CGGAAAAAAAATGCGAGCTT+AGG - chr2.2:51184900-51184919 MS.gene00383:CDS 40.0%
GCAAACAATGGTATCCTTGT+TGG + chr2.2:51184382-51184401 None:intergenic 40.0%
GCAAATACAACGGAGAACAA+TGG - chr2.2:51185029-51185048 MS.gene00383:CDS 40.0%
GGTTGTGATGAAAGTAACCA+AGG + chr2.2:51184201-51184220 None:intergenic 40.0%
GTGAAAATGGGAATGAGAAG+TGG + chr2.2:51183957-51183976 None:intergenic 40.0%
TATCAAAGCAGTCCGAAAAG+CGG + chr2.2:51184601-51184620 None:intergenic 40.0%
TCTAAGAAGCAGTCTAGCAA+TGG + chr2.2:51184499-51184518 None:intergenic 40.0%
TTATCCCCATCATGTTCTAG+AGG - chr2.2:51184431-51184450 MS.gene00383:CDS 40.0%
TTGCTAGACTGCTTCTTAGA+AGG - chr2.2:51184499-51184518 MS.gene00383:CDS 40.0%
TTTCATCACAACCCCACAAA+AGG - chr2.2:51184208-51184227 MS.gene00383:CDS 40.0%
! ACTTTGGCAACAACCTTTTG+TGG + chr2.2:51184224-51184243 None:intergenic 40.0%
! CTTTGGCAACAACCTTTTGT+GGG + chr2.2:51184223-51184242 None:intergenic 40.0%
! GCTCTTGGAATGATCCTTTT+AGG + chr2.2:51184846-51184865 None:intergenic 40.0%
! TTTGGCAACAACCTTTTGTG+GGG + chr2.2:51184222-51184241 None:intergenic 40.0%
!! ATCAGATGAAGAAGCACCAT+TGG + chr2.2:51184262-51184281 None:intergenic 40.0%
!! TCATCATCACAAAAGCACCT+TGG - chr2.2:51184181-51184200 MS.gene00383:CDS 40.0%
!! TTAGCCTCTAGAACATGATG+GGG + chr2.2:51184438-51184457 None:intergenic 40.0%
!!! GTGTGTTTTCAGCTTTAAGG+AGG - chr2.2:51184962-51184981 MS.gene00383:CDS 40.0%
TCCGAAAAGCGGTTGTTGAA+GGG + chr2.2:51184590-51184609 None:intergenic 45.0%
!! ACCCTTCAACAACCGCTTTT+CGG - chr2.2:51184586-51184605 MS.gene00383:CDS 45.0%
GTCCGAAAAGCGGTTGTTGA+AGG + chr2.2:51184591-51184610 None:intergenic 50.0%
!! TCAAATGGGTTGGGATCCCT+TGG - chr2.2:51184782-51184801 MS.gene00383:CDS 50.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 51183874 51185082 51183874 ID=MS.gene00383
chr2.2 mRNA 51183874 51185082 51183874 ID=MS.gene00383.t1;Parent=MS.gene00383
chr2.2 exon 51183874 51185082 51183874 ID=MS.gene00383.t1.exon1;Parent=MS.gene00383.t1
chr2.2 CDS 51183874 51185082 51183874 ID=cds.MS.gene00383.t1;Parent=MS.gene00383.t1
Gene Sequence

>MS.gene00383

ATGTCCAACAAATTGTTTTTCTCCCAGAATCTTGTTTTAGGTGTAATCACAACAAAATCAACAACCTTAAAATTCAACAACCACTTCTCATTCCCATTTTCACTCAAATGCAGCATCACAACATCTCAATCAGAATCAATCACACAACCATTTGCTGTATCCTACCTTATCAACAATTTTGGTTTCTCGTCTGAATCAGCTCTCAAAGCTTTCAACAACAAGCAGGTTCGTTTCAATTCCCCAGATAATCCTGATTCAGTTATCACCTTCTTTCAAAACCATGGTTTTTCACACGATAACATACGCATCATCATCACAAAAGCACCTTGGTTACTTTCATCACAACCCCACAAAAGGTTGTTGCCAAAGTTTGAATATTTTCTATCCAATGGTGCTTCTTCATCTGATATTGTTTCATTGTTAACTTCAAACCCTCAAATTTTACAAAGTAGTTTGGAGAAAAGAATAATCCCTCTTTTTGAATTGTTAAATAGGTTTTCGAAAACCAACAAGGATACCATTGTTTGCTTAATTCGAAATTCAAGATCATTTACTGTTTATCCCCATCATGTTCTAGAGGCTAATATCAATTTGATGTCTGATTTTGGAGTTTCTGATTCTGCCATTGCTAGACTGCTTCTTAGAAGGCCATCTATATTTTGTTCAAATGATTTGATTAAGTCATTGGAGGAAGTTAAGTGTTTAGGGTTTGACCCTTCAACAACCGCTTTTCGGACTGCTTTGATAGCCAAGAAATGTATGAGTAAAATACTTTGGGATAAGAAAGTTGATGTTTTTAAGAAACGGGGTTGGTCTGATGAAGCTGTTATTCGAGTATTTAGGTGTCAGCCTAGTTTGATGTTGACTTCAATTGATAAGATTAATCTGGTGATGAATTTTTGGGTTAATCAAATGGGTTGGGATCCCTTGGAACTTACTAAATCTCCACTTATGTTTTCTTATAGTTTACCTAAAAGGATCATTCCAAGAGCCTCAATTTTGCAATATCTTTTGATGAAAGGTTTGCGGAAAAAAAATGCGAGCTTAGGTAGACCATTTGCTTATTCTGAGAATATGTTCTTGAACAAGTGTGTTTTCAGCTTTAAGGAGGAGTCTGATTATCTGTTGAAGCTATATGACGAAAAAATGAAACTTGCAAATACAACGGAGAACAATGGGATGCCATCCACCAAATGTGTAATGTATTGA
Protein sequence

>MS.gene00383.t1

MSNKLFFSQNLVLGVITTKSTTLKFNNHFSFPFSLKCSITTSQSESITQPFAVSYLINNFGFSSESALKAFNNKQVRFNSPDNPDSVITFFQNHGFSHDNIRIIITKAPWLLSSQPHKRLLPKFEYFLSNGASSSDIVSLLTSNPQILQSSLEKRIIPLFELLNRFSKTNKDTIVCLIRNSRSFTVYPHHVLEANINLMSDFGVSDSAIARLLLRRPSIFCSNDLIKSLEEVKCLGFDPSTTAFRTALIAKKCMSKILWDKKVDVFKKRGWSDEAVIRVFRCQPSLMLTSIDKINLVMNFWVNQMGWDPLELTKSPLMFSYSLPKRIIPRASILQYLLMKGLRKKNASLGRPFAYSENMFLNKCVFSFKEESDYLLKLYDEKMKLANTTENNGMPSTKCVMY