AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene52392

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52392.t1 MTR_2g436440 88.718 390 43 1 1 390 1 389 0.0 706
MS.gene52392.t1 MTR_2g437060 66.582 395 122 4 1 386 1 394 0.0 515
MS.gene52392.t1 MTR_2g437080 66.839 386 121 3 1 386 1 379 0.0 510
MS.gene52392.t1 MTR_2g437020 68.280 372 113 4 21 390 15 383 2.56e-179 504
MS.gene52392.t1 MTR_2g437030 65.816 392 131 3 1 390 79 469 1.93e-177 502
MS.gene52392.t1 MTR_2g436400 66.237 388 115 4 1 380 1 380 1.13e-175 494
MS.gene52392.t1 MTR_2g437040 65.385 390 126 3 1 389 1 382 1.31e-175 494
MS.gene52392.t1 MTR_2g437120 53.175 378 171 4 17 390 21 396 1.04e-132 387
MS.gene52392.t1 MTR_2g437170 53.191 376 167 4 23 389 27 402 7.59e-131 382
MS.gene52392.t1 MTR_2g437150 52.660 376 169 4 23 389 27 402 2.31e-129 378
MS.gene52392.t1 MTR_2g438010 51.220 369 173 2 28 389 47 415 1.14e-126 372
MS.gene52392.t1 MTR_2g437990 51.344 372 167 3 28 389 27 394 1.05e-124 367
MS.gene52392.t1 MTR_2g437160 49.872 391 187 4 5 389 20 407 1.55e-124 365
MS.gene52392.t1 MTR_2g437200 50.392 383 149 4 34 377 18 398 1.96e-124 365
MS.gene52392.t1 MTR_2g076320 50.938 373 168 3 28 389 27 395 1.97e-124 365
MS.gene52392.t1 MTR_2g437130 51.515 363 172 3 29 389 23 383 3.60e-124 364
MS.gene52392.t1 MTR_2g437960 50.806 372 176 2 25 389 27 398 7.84e-124 363
MS.gene52392.t1 MTR_2g437100 53.100 371 161 4 20 377 25 395 1.56e-123 363
MS.gene52392.t1 MTR_2g437960 50.806 372 176 2 25 389 27 398 1.71e-123 363
MS.gene52392.t1 MTR_4g119550 49.422 346 172 2 42 386 46 389 6.51e-121 356
MS.gene52392.t1 MTR_2g437180 49.337 377 182 5 17 389 21 392 2.21e-119 352
MS.gene52392.t1 MTR_2g438020 49.364 393 156 5 36 389 60 448 1.29e-118 353
MS.gene52392.t1 MTR_2g437240 47.532 385 162 3 43 389 28 410 3.84e-117 347
MS.gene52392.t1 MTR_2g437940 48.806 377 158 4 17 389 21 366 1.69e-114 338
MS.gene52392.t1 MTR_2g437260 46.400 375 193 5 12 384 5 373 1.82e-114 339
MS.gene52392.t1 MTR_2g436460 50.585 342 166 2 40 380 40 379 2.91e-113 336
MS.gene52392.t1 MTR_4g120380 44.865 370 195 3 7 375 9 370 7.92e-98 296
MS.gene52392.t1 MTR_4g119580 45.322 342 184 2 35 375 31 370 1.65e-97 295
MS.gene52392.t1 MTR_2g019840 44.935 385 190 8 1 377 1 371 3.37e-97 295
MS.gene52392.t1 MTR_2g019810 45.028 362 186 6 18 377 9 359 2.07e-93 285
MS.gene52392.t1 MTR_4g120380 43.923 362 193 4 7 366 9 362 8.06e-92 282
MS.gene52392.t1 MTR_2g437090 70.060 167 50 0 220 386 1 167 5.98e-79 241
MS.gene52392.t1 MTR_2g436370 59.606 203 67 4 1 196 1 195 1.86e-67 213
MS.gene52392.t1 MTR_2g437160 51.724 203 95 1 190 389 114 316 3.10e-67 216
MS.gene52392.t1 MTR_3g450500 31.609 348 230 4 34 375 25 370 5.43e-54 183
MS.gene52392.t1 MTR_4g119570 38.554 249 120 1 127 375 14 229 2.37e-51 172
MS.gene52392.t1 MTR_4g007490 30.321 343 230 6 39 375 29 368 2.55e-45 160
MS.gene52392.t1 MTR_4g049400 44.928 138 72 2 13 146 12 149 1.58e-29 114
MS.gene52392.t1 MTR_8g080990 26.347 334 242 3 41 371 36 368 4.35e-29 116
MS.gene52392.t1 MTR_2g436380 47.788 113 52 2 220 332 1 106 2.51e-24 101
MS.gene52392.t1 MTR_8g081000 23.256 301 228 2 78 375 85 385 4.84e-23 100
MS.gene52392.t1 MTR_8g081000 23.256 301 228 2 78 375 85 385 5.36e-23 100
MS.gene52392.t1 MTR_8g081000 23.256 301 228 2 78 375 85 385 6.82e-23 99.8
MS.gene52392.t1 MTR_3g085240 35.669 157 87 4 12 168 27 169 1.05e-15 76.6
MS.gene52392.t1 MTR_3g085240 41.573 89 35 1 279 367 176 247 8.59e-14 71.2
MS.gene52392.t1 MTR_8g012210 22.635 296 206 9 93 375 63 348 1.03e-13 72.4
MS.gene52392.t1 MTR_4g119615 56.604 53 23 0 316 368 23 75 5.28e-13 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52392.t1 AT5G07900 34.835 333 209 4 48 374 69 399 2.06e-66 216
MS.gene52392.t1 AT1G21150 31.420 331 219 5 48 372 56 384 2.65e-47 166
MS.gene52392.t1 AT1G21150 31.420 331 219 5 48 372 120 448 7.45e-47 166
MS.gene52392.t1 AT1G21150 30.539 334 224 5 45 372 17 348 7.65e-47 164
MS.gene52392.t1 AT1G61990 27.397 365 217 6 49 374 53 408 1.82e-36 137
MS.gene52392.t1 AT1G61990 27.397 365 217 6 49 374 53 408 1.82e-36 137
MS.gene52392.t1 AT1G61970 28.000 350 213 5 48 360 52 399 5.72e-35 133
MS.gene52392.t1 AT1G61970 28.000 350 213 5 48 360 52 399 5.72e-35 133
MS.gene52392.t1 AT1G61970 28.000 350 213 5 48 360 52 399 5.72e-35 133
MS.gene52392.t1 AT1G61970 28.000 350 213 5 48 360 52 399 5.72e-35 133
MS.gene52392.t1 AT1G61970 28.000 350 213 5 48 360 52 399 5.72e-35 133
MS.gene52392.t1 AT1G61970 28.000 350 213 5 48 360 52 399 5.72e-35 133
MS.gene52392.t1 AT1G61970 28.000 350 213 5 48 360 52 399 5.72e-35 133
MS.gene52392.t1 AT1G61980 27.869 366 223 6 48 374 52 415 9.99e-35 133
MS.gene52392.t1 AT1G61980 27.869 366 223 6 48 374 52 415 9.99e-35 133
MS.gene52392.t1 AT1G61980 27.869 366 223 6 48 374 52 415 9.99e-35 133
MS.gene52392.t1 AT3G46950 31.293 294 190 6 34 322 38 324 1.51e-32 127
MS.gene52392.t1 AT1G62085 27.033 418 220 12 25 360 25 439 8.67e-32 125
MS.gene52392.t1 AT1G62085 27.033 418 220 12 25 360 25 439 8.67e-32 125
MS.gene52392.t1 AT1G62120 27.273 352 215 6 48 360 56 405 1.30e-31 124
MS.gene52392.t1 AT5G64950 27.907 344 231 8 37 366 26 366 3.39e-30 120
MS.gene52392.t1 AT1G61960 24.688 401 225 8 49 374 53 451 1.63e-27 113
MS.gene52392.t1 AT5G23930 25.298 419 225 9 23 360 20 431 1.82e-26 110
MS.gene52392.t1 AT1G62010 25.079 315 197 4 83 360 71 383 6.92e-25 105
MS.gene52392.t1 AT1G62110 27.152 302 206 8 30 322 34 330 8.62e-23 100
MS.gene52392.t1 AT1G62150 28.226 248 161 5 41 279 51 290 3.07e-21 95.5

Find 94 sgRNAs with CRISPR-Local

Find 113 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTATCTCATTCACAATTT+TGG 0.046895 2.3:+54843874 MS.gene52392:CDS
TAAGAATCATATGACGTAAT+TGG 0.170642 2.3:-54844011 None:intergenic
TGAGAACAGAATCAGGTTTC+TGG 0.202524 2.3:-54843957 None:intergenic
TTAATTTAGTGATGAACTTT+TGG 0.234643 2.3:+54844586 MS.gene52392:CDS
ATTCGAAATTCAACTCTCTT+TGG 0.256691 2.3:+54844246 MS.gene52392:CDS
GTGGAGGAATTAAAGGATTT+GGG 0.286091 2.3:+54844390 MS.gene52392:CDS
CAAGTTGGTGGAGGAATTAA+AGG 0.293374 2.3:+54844383 MS.gene52392:CDS
AAACTTTGGCAAAACCCTTT+TGG 0.296153 2.3:-54844064 None:intergenic
GTTGCAAAAGGTTAGGGTTT+GGG 0.297466 2.3:-54843783 None:intergenic
GTGCAGAAATGCAAAGAAAA+TGG 0.304758 2.3:-54843817 None:intergenic
AGACCAACCCCATTTCTTAA+AGG 0.307244 2.3:-54844499 None:intergenic
GGTGGAGGAATTAAAGGATT+TGG 0.308407 2.3:+54844389 MS.gene52392:CDS
CTCACTTTCTTTAGAAATCA+TGG 0.312679 2.3:+54843976 MS.gene52392:CDS
ACTAATAACCCTTGGTACTT+TGG 0.349074 2.3:-54844643 None:intergenic
GAGTAATGTTGCAAAAGGTT+AGG 0.350241 2.3:-54843790 None:intergenic
CAACTATAAACAAAACCTTA+TGG 0.357342 2.3:+54844460 MS.gene52392:CDS
AGTCGATACCTTTAAGAAAT+GGG 0.363719 2.3:+54844491 MS.gene52392:CDS
TTGGGTCAATCAGTTGGGTT+GGG 0.365374 2.3:+54844605 MS.gene52392:CDS
GTACACACCAGGGACAAAAT+TGG 0.368393 2.3:+54844861 MS.gene52392:CDS
AAGTCGATACCTTTAAGAAA+TGG 0.369211 2.3:+54844490 MS.gene52392:CDS
GGGACTGGAGTCAGGTATTC+CGG 0.370799 2.3:+54844346 MS.gene52392:CDS
AGGTTAGGGTTTGGGGATTG+TGG 0.372461 2.3:-54843775 None:intergenic
GGTTAGGGTTTGGGGATTGT+GGG 0.386637 2.3:-54843774 None:intergenic
ATCCGTTGAGATAGTAGATT+AGG 0.391179 2.3:-54843744 None:intergenic
GACATTTAATATCAAATTGC+TGG 0.392091 2.3:+54844281 MS.gene52392:CDS
TATAGTCCCAACCTATGAAT+TGG 0.392822 2.3:+54844179 MS.gene52392:CDS
AGTAATGTTGCAAAAGGTTA+GGG 0.403255 2.3:-54843789 None:intergenic
TCCAAAATTGTGAATGAGAT+AGG 0.407036 2.3:-54843875 None:intergenic
TACCTCTGACATTGTTAACT+TGG 0.407314 2.3:+54844113 MS.gene52392:CDS
GTGCAATATCTTCTAAAGAA+AGG 0.408077 2.3:+54844705 MS.gene52392:CDS
AAGAATCATATGACGTAATT+GGG 0.408823 2.3:-54844010 None:intergenic
ATTACGTCATATGATTCTTA+AGG 0.409783 2.3:+54844014 MS.gene52392:CDS
TGTTGCAAAAGGTTAGGGTT+TGG 0.412273 2.3:-54843784 None:intergenic
ATCAAATTGCTGGTTGAGAA+TGG 0.417136 2.3:+54844291 MS.gene52392:CDS
GTCAGAGGTAGAAGCACCTT+TGG 0.417863 2.3:-54844100 None:intergenic
TTATAGATTCTTGCAATCTC+AGG 0.418358 2.3:+54844203 MS.gene52392:CDS
CATGATTCTTGCTCGAAGCC+TGG 0.430577 2.3:+54844149 MS.gene52392:CDS
TCCGTTGAGATAGTAGATTA+GGG 0.431555 2.3:-54843743 None:intergenic
ATCGACTTTCTCTTTCCATA+AGG 0.444594 2.3:-54844475 None:intergenic
TTGCAAAAGGTTAGGGTTTG+GGG 0.444897 2.3:-54843782 None:intergenic
AAGAGTTTAGAAGCAAATTG+TGG 0.449537 2.3:-54843904 None:intergenic
GAGAACAGAATCAGGTTTCT+GGG 0.450478 2.3:-54843956 None:intergenic
AAGAAAGTGAGAACAGAATC+AGG 0.451252 2.3:-54843964 None:intergenic
GAATCTATAAACCAATTCAT+AGG 0.454188 2.3:-54844190 None:intergenic
AACGTATTATGTATGTGTTA+AGG 0.454424 2.3:-54844785 None:intergenic
TGGTAAGATTGCTTCGGGAC+TGG 0.458406 2.3:+54844331 MS.gene52392:CDS
ATTGCTTCGGGACTGGAGTC+AGG 0.459523 2.3:+54844338 MS.gene52392:CDS
TATAAACCAATTCATAGGTT+GGG 0.464451 2.3:-54844185 None:intergenic
CAAACATGGTAAGATTGCTT+CGG 0.473055 2.3:+54844325 MS.gene52392:CDS
AGAGTTTAGAAGCAAATTGT+GGG 0.475365 2.3:-54843903 None:intergenic
GACTTATCAGTCATTACAAA+TGG 0.480807 2.3:-54844759 None:intergenic
TTTGGGTCAATCAGTTGGGT+TGG 0.480856 2.3:+54844604 MS.gene52392:CDS
TTTCCTGCGACCCCTCCAAA+AGG 0.486453 2.3:+54844049 MS.gene52392:CDS
TATTGCTGAAGCATTTAGAA+AGG 0.489696 2.3:+54844530 MS.gene52392:CDS
TCAAATTGCTGGTTGAGAAT+GGG 0.490316 2.3:+54844292 MS.gene52392:CDS
CAGGCTTCGAGCAAGAATCA+TGG 0.492205 2.3:-54844148 None:intergenic
GCAATGAGTAATGTTGCAAA+AGG 0.496069 2.3:-54843795 None:intergenic
GAAATTCAACTCTCTTTGGA+AGG 0.502572 2.3:+54844250 MS.gene52392:CDS
GTTGAAGCGAACATTGTAAG+AGG 0.506885 2.3:-54843929 None:intergenic
TCAGTTGGGTTGGGATGCTA+TGG 0.506950 2.3:+54844614 MS.gene52392:CDS
CTATAAACCAATTCATAGGT+TGG 0.510197 2.3:-54844186 None:intergenic
ACTTGAGCATGTCATGTGTC+CGG 0.528692 2.3:-54844365 None:intergenic
AGGCTTCGAGCAAGAATCAT+GGG 0.530521 2.3:-54844147 None:intergenic
AACCCTTGGTACTTTGGCAA+TGG 0.532796 2.3:-54844637 None:intergenic
TTCCTGCGACCCCTCCAAAA+GGG 0.539011 2.3:+54844050 MS.gene52392:CDS
AAACATGGTAAGATTGCTTC+GGG 0.546729 2.3:+54844326 MS.gene52392:CDS
AGCTGAATCTTGTACACACC+AGG 0.549695 2.3:+54844850 MS.gene52392:CDS
AGATAGGACACAACAAATGA+AGG 0.552393 2.3:-54843859 None:intergenic
ACATGACATGCTCAAGTTGG+TGG 0.565635 2.3:+54844371 MS.gene52392:CDS
GTCGATACCTTTAAGAAATG+GGG 0.575626 2.3:+54844492 MS.gene52392:CDS
ACCCTAATCTACTATCTCAA+CGG 0.578053 2.3:+54843742 MS.gene52392:CDS
CCAGAAAATTATCATACCTA+GGG 0.587562 2.3:+54844674 MS.gene52392:CDS
GACACATGACATGCTCAAGT+TGG 0.590676 2.3:+54844368 MS.gene52392:CDS
AGACTACAACTAATAACCCT+TGG 0.592723 2.3:-54844651 None:intergenic
AGATTCTTGCAATCTCAGGT+TGG 0.592948 2.3:+54844207 MS.gene52392:CDS
CAATCTTACCATGTTTGAGT+CGG 0.594458 2.3:-54844319 None:intergenic
ATTTCGAATTACACAAGCAG+TGG 0.596649 2.3:-54844232 None:intergenic
ATCAGTCATTACAAATGGAG+TGG 0.601136 2.3:-54844754 None:intergenic
GGGTCGCAGGAAAGTAGCCA+TGG 0.602735 2.3:-54844039 None:intergenic
TGACATGCTCAAGTTGGTGG+AGG 0.604351 2.3:+54844374 MS.gene52392:CDS
CAAATTGCTGGTTGAGAATG+GGG 0.604652 2.3:+54844293 MS.gene52392:CDS
TCCAGAAAATTATCATACCT+AGG 0.606904 2.3:+54844673 MS.gene52392:CDS
GGCCATTGCCAAAGTACCAA+GGG 0.609457 2.3:+54844635 MS.gene52392:CDS
TGGAGGAATTAAAGGATTTG+GGG 0.615469 2.3:+54844391 MS.gene52392:CDS
ATACCTTTAAGAAATGGGGT+TGG 0.619145 2.3:+54844496 MS.gene52392:CDS
TATTGCACAACTGAGGCCCT+AGG 0.619185 2.3:-54844690 None:intergenic
TAGAAGATATTGCACAACTG+AGG 0.636070 2.3:-54844697 None:intergenic
TGGCCATTGCCAAAGTACCA+AGG 0.638748 2.3:+54844634 MS.gene52392:CDS
GAGTTTAGAAGCAAATTGTG+GGG 0.642150 2.3:-54843902 None:intergenic
TGGGGTGACCGACTCAAACA+TGG 0.647119 2.3:+54844311 MS.gene52392:CDS
GACCAAGTTAACAATGTCAG+AGG 0.654821 2.3:-54844115 None:intergenic
GGCTTCGAGCAAGAATCATG+GGG 0.703840 2.3:-54844146 None:intergenic
ATATGATTCTTAAGGCACCA+TGG 0.707927 2.3:+54844022 MS.gene52392:CDS
GCTGAATCTTGTACACACCA+GGG 0.712860 2.3:+54844851 MS.gene52392:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CACTAAATTAATTTTATCAA+TGG - chr2.3:54844577-54844596 None:intergenic 15.0%
!!! ATAACAAAAGATGTTTTTGA+AGG - chr2.3:54844423-54844442 None:intergenic 20.0%
!!! TAATTTAGTGATGAACTTTT+GGG + chr2.3:54844587-54844606 MS.gene52392:CDS 20.0%
!!! TTAATTTAGTGATGAACTTT+TGG + chr2.3:54844586-54844605 MS.gene52392:CDS 20.0%
! AACGTATTATGTATGTGTTA+AGG - chr2.3:54844788-54844807 None:intergenic 25.0%
! AAGAATCATATGACGTAATT+GGG - chr2.3:54844013-54844032 None:intergenic 25.0%
! ATTACGTCATATGATTCTTA+AGG + chr2.3:54844014-54844033 MS.gene52392:CDS 25.0%
! CAACTATAAACAAAACCTTA+TGG + chr2.3:54844460-54844479 MS.gene52392:CDS 25.0%
! GAATCTATAAACCAATTCAT+AGG - chr2.3:54844193-54844212 None:intergenic 25.0%
! GACATTTAATATCAAATTGC+TGG + chr2.3:54844281-54844300 MS.gene52392:CDS 25.0%
! GAGAGAAAAAATTGAAACTT+TGG - chr2.3:54844081-54844100 None:intergenic 25.0%
! TAAGAATCATATGACGTAAT+TGG - chr2.3:54844014-54844033 None:intergenic 25.0%
! TATAAACCAATTCATAGGTT+GGG - chr2.3:54844188-54844207 None:intergenic 25.0%
!! CACATACATAATACGTTTTA+AGG + chr2.3:54844791-54844810 MS.gene52392:CDS 25.0%
!!! ATACATAATACGTTTTAAGG+AGG + chr2.3:54844794-54844813 MS.gene52392:CDS 25.0%
!!! ATGGATTTTAACATACAATG+AGG - chr2.3:54844558-54844577 None:intergenic 25.0%
!!! GGTTTTGTTTATAGTTGTTT+TGG - chr2.3:54844457-54844476 None:intergenic 25.0%
!!! TGGATTTTAACATACAATGA+GGG - chr2.3:54844557-54844576 None:intergenic 25.0%
!!! TTTCAATTTTTTCTCTCCAA+AGG + chr2.3:54844084-54844103 MS.gene52392:CDS 25.0%
AAGAGTTTAGAAGCAAATTG+TGG - chr2.3:54843907-54843926 None:intergenic 30.0%
AGAGTTTAGAAGCAAATTGT+GGG - chr2.3:54843906-54843925 None:intergenic 30.0%
AGTAATGTTGCAAAAGGTTA+GGG - chr2.3:54843792-54843811 None:intergenic 30.0%
ATTCGAAATTCAACTCTCTT+TGG + chr2.3:54844246-54844265 MS.gene52392:CDS 30.0%
CCAGAAAATTATCATACCTA+GGG + chr2.3:54844674-54844693 MS.gene52392:CDS 30.0%
CTATAAACCAATTCATAGGT+TGG - chr2.3:54844189-54844208 None:intergenic 30.0%
GACTTATCAGTCATTACAAA+TGG - chr2.3:54844762-54844781 None:intergenic 30.0%
TCCAAAATTGTGAATGAGAT+AGG - chr2.3:54843878-54843897 None:intergenic 30.0%
TCCAGAAAATTATCATACCT+AGG + chr2.3:54844673-54844692 MS.gene52392:CDS 30.0%
TTATAGATTCTTGCAATCTC+AGG + chr2.3:54844203-54844222 MS.gene52392:CDS 30.0%
! AAGTCGATACCTTTAAGAAA+TGG + chr2.3:54844490-54844509 MS.gene52392:CDS 30.0%
! AGTCGATACCTTTAAGAAAT+GGG + chr2.3:54844491-54844510 MS.gene52392:CDS 30.0%
! CTCACTTTCTTTAGAAATCA+TGG + chr2.3:54843976-54843995 MS.gene52392:CDS 30.0%
! GTGCAATATCTTCTAAAGAA+AGG + chr2.3:54844705-54844724 MS.gene52392:CDS 30.0%
! TATTGCTGAAGCATTTAGAA+AGG + chr2.3:54844530-54844549 MS.gene52392:CDS 30.0%
! TCCTATCTCATTCACAATTT+TGG + chr2.3:54843874-54843893 MS.gene52392:CDS 30.0%
AAACATGGTAAGATTGCTTC+GGG + chr2.3:54844326-54844345 MS.gene52392:CDS 35.0%
AAGAAAGTGAGAACAGAATC+AGG - chr2.3:54843967-54843986 None:intergenic 35.0%
ACCCTAATCTACTATCTCAA+CGG + chr2.3:54843742-54843761 MS.gene52392:CDS 35.0%
ACTAATAACCCTTGGTACTT+TGG - chr2.3:54844646-54844665 None:intergenic 35.0%
AGACTACAACTAATAACCCT+TGG - chr2.3:54844654-54844673 None:intergenic 35.0%
AGATAGGACACAACAAATGA+AGG - chr2.3:54843862-54843881 None:intergenic 35.0%
ATCAGTCATTACAAATGGAG+TGG - chr2.3:54844757-54844776 None:intergenic 35.0%
ATCCGTTGAGATAGTAGATT+AGG - chr2.3:54843747-54843766 None:intergenic 35.0%
ATTTCGAATTACACAAGCAG+TGG - chr2.3:54844235-54844254 None:intergenic 35.0%
CAAACATGGTAAGATTGCTT+CGG + chr2.3:54844325-54844344 MS.gene52392:CDS 35.0%
CAATCTTACCATGTTTGAGT+CGG - chr2.3:54844322-54844341 None:intergenic 35.0%
GAAATTCAACTCTCTTTGGA+AGG + chr2.3:54844250-54844269 MS.gene52392:CDS 35.0%
GAGTAATGTTGCAAAAGGTT+AGG - chr2.3:54843793-54843812 None:intergenic 35.0%
GAGTTTAGAAGCAAATTGTG+GGG - chr2.3:54843905-54843924 None:intergenic 35.0%
GCAATGAGTAATGTTGCAAA+AGG - chr2.3:54843798-54843817 None:intergenic 35.0%
GTGCAGAAATGCAAAGAAAA+TGG - chr2.3:54843820-54843839 None:intergenic 35.0%
GTGGAGGAATTAAAGGATTT+GGG + chr2.3:54844390-54844409 MS.gene52392:CDS 35.0%
TACCTCTGACATTGTTAACT+TGG + chr2.3:54844113-54844132 MS.gene52392:CDS 35.0%
TAGAAGATATTGCACAACTG+AGG - chr2.3:54844700-54844719 None:intergenic 35.0%
TATAGTCCCAACCTATGAAT+TGG + chr2.3:54844179-54844198 MS.gene52392:CDS 35.0%
TCCGTTGAGATAGTAGATTA+GGG - chr2.3:54843746-54843765 None:intergenic 35.0%
TGGAGGAATTAAAGGATTTG+GGG + chr2.3:54844391-54844410 MS.gene52392:CDS 35.0%
! AAACTTTGGCAAAACCCTTT+TGG - chr2.3:54844067-54844086 None:intergenic 35.0%
! ATACCTTTAAGAAATGGGGT+TGG + chr2.3:54844496-54844515 MS.gene52392:CDS 35.0%
! ATATGATTCTTAAGGCACCA+TGG + chr2.3:54844022-54844041 MS.gene52392:CDS 35.0%
! ATCAAATTGCTGGTTGAGAA+TGG + chr2.3:54844291-54844310 MS.gene52392:CDS 35.0%
! ATCGACTTTCTCTTTCCATA+AGG - chr2.3:54844478-54844497 None:intergenic 35.0%
! CCCTAGGTATGATAATTTTC+TGG - chr2.3:54844677-54844696 None:intergenic 35.0%
! GTCGATACCTTTAAGAAATG+GGG + chr2.3:54844492-54844511 MS.gene52392:CDS 35.0%
! TCAAATTGCTGGTTGAGAAT+GGG + chr2.3:54844292-54844311 MS.gene52392:CDS 35.0%
! TTGGGACTATATGATTTTCC+AGG - chr2.3:54844170-54844189 None:intergenic 35.0%
!! AACTTTTGGGTCAATCAGTT+GGG + chr2.3:54844600-54844619 MS.gene52392:CDS 35.0%
AGACCAACCCCATTTCTTAA+AGG - chr2.3:54844502-54844521 None:intergenic 40.0%
AGATTCTTGCAATCTCAGGT+TGG + chr2.3:54844207-54844226 MS.gene52392:CDS 40.0%
GACCAAGTTAACAATGTCAG+AGG - chr2.3:54844118-54844137 None:intergenic 40.0%
GAGAACAGAATCAGGTTTCT+GGG - chr2.3:54843959-54843978 None:intergenic 40.0%
GGTGGAGGAATTAAAGGATT+TGG + chr2.3:54844389-54844408 MS.gene52392:CDS 40.0%
GTTGAAGCGAACATTGTAAG+AGG - chr2.3:54843932-54843951 None:intergenic 40.0%
GTTGCAAAAGGTTAGGGTTT+GGG - chr2.3:54843786-54843805 None:intergenic 40.0%
TGAGAACAGAATCAGGTTTC+TGG - chr2.3:54843960-54843979 None:intergenic 40.0%
TGTTGCAAAAGGTTAGGGTT+TGG - chr2.3:54843787-54843806 None:intergenic 40.0%
TTGCAAAAGGTTAGGGTTTG+GGG - chr2.3:54843785-54843804 None:intergenic 40.0%
! CAAATTGCTGGTTGAGAATG+GGG + chr2.3:54844293-54844312 MS.gene52392:CDS 40.0%
! TTTGGCAAAACCCTTTTGGA+GGG - chr2.3:54844063-54844082 None:intergenic 40.0%
!! CAAGTTGGTGGAGGAATTAA+AGG + chr2.3:54844383-54844402 MS.gene52392:CDS 40.0%
!! GAACTTTTGGGTCAATCAGT+TGG + chr2.3:54844599-54844618 MS.gene52392:CDS 40.0%
AACCCTTGGTACTTTGGCAA+TGG - chr2.3:54844640-54844659 None:intergenic 45.0%
ACTTGAGCATGTCATGTGTC+CGG - chr2.3:54844368-54844387 None:intergenic 45.0%
AGCTGAATCTTGTACACACC+AGG + chr2.3:54844850-54844869 MS.gene52392:CDS 45.0%
AGGCTTCGAGCAAGAATCAT+GGG - chr2.3:54844150-54844169 None:intergenic 45.0%
GACACATGACATGCTCAAGT+TGG + chr2.3:54844368-54844387 MS.gene52392:CDS 45.0%
GCTGAATCTTGTACACACCA+GGG + chr2.3:54844851-54844870 MS.gene52392:CDS 45.0%
GTACACACCAGGGACAAAAT+TGG + chr2.3:54844861-54844880 MS.gene52392:CDS 45.0%
TTGGGTCAATCAGTTGGGTT+GGG + chr2.3:54844605-54844624 MS.gene52392:CDS 45.0%
TTTGGGTCAATCAGTTGGGT+TGG + chr2.3:54844604-54844623 MS.gene52392:CDS 45.0%
! CTTTGGCAAAACCCTTTTGG+AGG - chr2.3:54844064-54844083 None:intergenic 45.0%
! TGACATGCCAATTTTGTCCC+TGG - chr2.3:54844871-54844890 None:intergenic 45.0%
!! ACATGACATGCTCAAGTTGG+TGG + chr2.3:54844371-54844390 MS.gene52392:CDS 45.0%
!! TTGGCAAAACCCTTTTGGAG+GGG - chr2.3:54844062-54844081 None:intergenic 45.0%
AGGTTAGGGTTTGGGGATTG+TGG - chr2.3:54843778-54843797 None:intergenic 50.0%
CAGGCTTCGAGCAAGAATCA+TGG - chr2.3:54844151-54844170 None:intergenic 50.0%
CATGATTCTTGCTCGAAGCC+TGG + chr2.3:54844149-54844168 MS.gene52392:CDS 50.0%
GGCTTCGAGCAAGAATCATG+GGG - chr2.3:54844149-54844168 None:intergenic 50.0%
GGTTAGGGTTTGGGGATTGT+GGG - chr2.3:54843777-54843796 None:intergenic 50.0%
TATTGCACAACTGAGGCCCT+AGG - chr2.3:54844693-54844712 None:intergenic 50.0%
TGGTAAGATTGCTTCGGGAC+TGG + chr2.3:54844331-54844350 MS.gene52392:CDS 50.0%
! GGCCATTGCCAAAGTACCAA+GGG + chr2.3:54844635-54844654 MS.gene52392:CDS 50.0%
! TGGCCATTGCCAAAGTACCA+AGG + chr2.3:54844634-54844653 MS.gene52392:CDS 50.0%
!! GTCAGAGGTAGAAGCACCTT+TGG - chr2.3:54844103-54844122 None:intergenic 50.0%
!! TCAGTTGGGTTGGGATGCTA+TGG + chr2.3:54844614-54844633 MS.gene52392:CDS 50.0%
!! TGACATGCTCAAGTTGGTGG+AGG + chr2.3:54844374-54844393 MS.gene52392:CDS 50.0%
ATTGCTTCGGGACTGGAGTC+AGG + chr2.3:54844338-54844357 MS.gene52392:CDS 55.0%
GGGACTGGAGTCAGGTATTC+CGG + chr2.3:54844346-54844365 MS.gene52392:CDS 55.0%
TTCCTGCGACCCCTCCAAAA+GGG + chr2.3:54844050-54844069 MS.gene52392:CDS 55.0%
TTTCCTGCGACCCCTCCAAA+AGG + chr2.3:54844049-54844068 MS.gene52392:CDS 55.0%
! TGGGGTGACCGACTCAAACA+TGG + chr2.3:54844311-54844330 MS.gene52392:CDS 55.0%
GGGTCGCAGGAAAGTAGCCA+TGG - chr2.3:54844042-54844061 None:intergenic 60.0%
!! AACCCTTTTGGAGGGGTCGC+AGG - chr2.3:54844055-54844074 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 54843721 54844893 54843721 ID=MS.gene52392
chr2.3 mRNA 54843721 54844893 54843721 ID=MS.gene52392.t1;Parent=MS.gene52392
chr2.3 exon 54843721 54844893 54843721 ID=MS.gene52392.t1.exon1;Parent=MS.gene52392.t1
chr2.3 CDS 54843721 54844893 54843721 ID=cds.MS.gene52392.t1;Parent=MS.gene52392.t1
Gene Sequence

>MS.gene52392

ATGTTCAAGTTCAACAGAAAAACCCTAATCTACTATCTCAACGGATTAACTTTCCCACAATCCCCAAACCCTAACCTTTTGCAACATTACTCATTGCCATTTTCTTTGCATTTCTGCACTAAAACTTCAGCAGATTCACCTTCATTTGTTGTGTCCTATCTCATTCACAATTTTGGATTCACCCCACAATTTGCTTCTAAACTCTTCTCCTCTTACAATGTTCGCTTCAACACTTCCCAGAAACCTGATTCTGTTCTCACTTTCTTTAGAAATCATGGTTTCTCTGATTCCCAATTACGTCATATGATTCTTAAGGCACCATGGCTACTTTCCTGCGACCCCTCCAAAAGGGTTTTGCCAAAGTTTCAATTTTTTCTCTCCAAAGGTGCTTCTACCTCTGACATTGTTAACTTGGTCAGTAAGAGCCCCATGATTCTTGCTCGAAGCCTGGAAAATCATATAGTCCCAACCTATGAATTGGTTTATAGATTCTTGCAATCTCAGGTTGGCACCACTGCTTGTGTAATTCGAAATTCAACTCTCTTTGGAAGGAGTCATGTGACATTTAATATCAAATTGCTGGTTGAGAATGGGGTGACCGACTCAAACATGGTAAGATTGCTTCGGGACTGGAGTCAGGTATTCCGGACACATGACATGCTCAAGTTGGTGGAGGAATTAAAGGATTTGGGGTTTAATCCTTCAAAAACATCTTTTGTTATAGCGCTGCTTGCCAAAACAACTATAAACAAAACCTTATGGAAAGAGAAAGTCGATACCTTTAAGAAATGGGGTTGGTCTGATGAAGATATTGCTGAAGCATTTAGAAAGGACCCTCATTGTATGTTAAAATCCATTGATAAAATTAATTTAGTGATGAACTTTTGGGTCAATCAGTTGGGTTGGGATGCTATGGCCATTGCCAAAGTACCAAGGGTTATTAGTTGTAGTCTCCAGAAAATTATCATACCTAGGGCCTCAGTTGTGCAATATCTTCTAAAGAAAGGTTTGCAGAAAAAGAATGCAAGCTTAACCACTCCATTTGTAATGACTGATAAGTCGTTCCTTAACACATACATAATACGTTTTAAGGAGGAGTCATCTTATCTCTTAAAGCTCTATGAAGAAAAGCTGAATCTTGTACACACCAGGGACAAAATTGGCATGTCATGA
Protein sequence

>MS.gene52392.t1

MFKFNRKTLIYYLNGLTFPQSPNPNLLQHYSLPFSLHFCTKTSADSPSFVVSYLIHNFGFTPQFASKLFSSYNVRFNTSQKPDSVLTFFRNHGFSDSQLRHMILKAPWLLSCDPSKRVLPKFQFFLSKGASTSDIVNLVSKSPMILARSLENHIVPTYELVYRFLQSQVGTTACVIRNSTLFGRSHVTFNIKLLVENGVTDSNMVRLLRDWSQVFRTHDMLKLVEELKDLGFNPSKTSFVIALLAKTTINKTLWKEKVDTFKKWGWSDEDIAEAFRKDPHCMLKSIDKINLVMNFWVNQLGWDAMAIAKVPRVISCSLQKIIIPRASVVQYLLKKGLQKKNASLTTPFVMTDKSFLNTYIIRFKEESSYLLKLYEEKLNLVHTRDKIGMS