AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene073379

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene073379.t1 MTR_2g437180 90.547 402 32 1 1 402 1 396 0.0 728
MS.gene073379.t1 MTR_2g437150 71.675 406 111 2 1 402 1 406 0.0 576
MS.gene073379.t1 MTR_2g437170 71.960 403 109 2 1 399 1 403 0.0 573
MS.gene073379.t1 MTR_2g437120 70.149 402 113 3 1 400 1 397 0.0 546
MS.gene073379.t1 MTR_2g437960 72.569 401 106 2 1 399 1 399 0.0 542
MS.gene073379.t1 MTR_2g437960 72.569 401 106 2 1 399 1 399 0.0 541
MS.gene073379.t1 MTR_2g437160 67.574 404 125 3 1 402 12 411 0.0 533
MS.gene073379.t1 MTR_2g437990 68.564 404 117 4 1 401 1 397 0.0 530
MS.gene073379.t1 MTR_2g076320 66.253 403 129 2 1 401 1 398 0.0 514
MS.gene073379.t1 MTR_2g438010 64.020 403 138 2 1 401 21 418 2.40e-178 503
MS.gene073379.t1 MTR_2g437940 65.757 403 102 3 1 401 1 369 2.59e-178 501
MS.gene073379.t1 MTR_2g437100 68.782 394 110 4 1 386 7 395 6.73e-177 499
MS.gene073379.t1 MTR_2g437240 60.250 400 114 4 36 398 19 410 2.58e-156 447
MS.gene073379.t1 MTR_2g438020 59.530 383 115 4 56 401 72 451 4.01e-148 429
MS.gene073379.t1 MTR_2g437200 59.424 382 114 4 42 386 21 398 7.84e-147 422
MS.gene073379.t1 MTR_2g437130 58.667 375 142 5 31 401 21 386 2.29e-143 413
MS.gene073379.t1 MTR_2g437080 52.432 370 166 5 31 398 21 382 3.71e-124 364
MS.gene073379.t1 MTR_2g437020 53.476 374 158 7 29 394 13 378 1.72e-121 357
MS.gene073379.t1 MTR_2g436440 49.474 380 182 4 21 398 17 388 1.11e-118 350
MS.gene073379.t1 MTR_2g437060 50.549 364 170 4 33 394 38 393 2.24e-116 345
MS.gene073379.t1 MTR_2g437040 49.730 370 176 4 31 398 21 382 8.29e-112 333
MS.gene073379.t1 MTR_2g437260 48.596 356 172 6 42 393 25 373 9.83e-112 333
MS.gene073379.t1 MTR_2g437030 47.044 389 191 5 12 398 93 468 8.78e-110 330
MS.gene073379.t1 MTR_2g436400 48.913 368 171 6 25 386 21 377 1.38e-109 327
MS.gene073379.t1 MTR_2g436460 50.432 347 160 6 44 387 40 377 5.37e-104 312
MS.gene073379.t1 MTR_4g119550 46.610 354 175 5 44 394 46 388 5.80e-102 308
MS.gene073379.t1 MTR_4g120380 44.412 340 180 4 46 383 37 369 3.94e-89 274
MS.gene073379.t1 MTR_2g437160 68.617 188 57 1 217 402 133 320 3.35e-85 262
MS.gene073379.t1 MTR_2g437160 65.854 123 39 1 1 123 12 131 3.09e-43 154
MS.gene073379.t1 MTR_4g120380 44.012 334 179 4 46 378 37 363 1.00e-84 265
MS.gene073379.t1 MTR_4g119580 42.857 343 187 4 43 383 34 369 1.82e-84 262
MS.gene073379.t1 MTR_2g019810 42.183 339 175 8 57 386 33 359 1.33e-71 229
MS.gene073379.t1 MTR_4g049400 72.903 155 37 1 1 155 1 150 2.16e-70 221
MS.gene073379.t1 MTR_2g019840 40.227 353 197 8 38 386 29 371 1.20e-68 222
MS.gene073379.t1 MTR_2g437090 52.047 171 80 1 231 399 1 171 1.93e-56 183
MS.gene073379.t1 MTR_3g450500 30.631 333 222 5 57 383 40 369 6.39e-48 167
MS.gene073379.t1 MTR_4g119570 37.600 250 118 3 135 382 14 227 1.32e-45 157
MS.gene073379.t1 MTR_4g007490 28.775 351 240 6 38 383 22 367 1.07e-39 145
MS.gene073379.t1 MTR_2g436370 43.373 166 87 3 42 207 37 195 3.16e-34 126
MS.gene073379.t1 MTR_8g080990 31.773 299 194 5 88 380 74 368 3.50e-30 120
MS.gene073379.t1 MTR_8g081000 28.146 302 211 3 86 383 85 384 1.10e-28 116
MS.gene073379.t1 MTR_8g081000 28.146 302 211 3 86 383 85 384 1.21e-28 116
MS.gene073379.t1 MTR_8g081000 28.146 302 211 3 86 383 85 384 1.73e-28 115
MS.gene073379.t1 MTR_3g085240 52.174 92 25 2 288 377 174 248 1.08e-19 88.2
MS.gene073379.t1 MTR_3g085240 39.634 164 76 6 20 182 34 175 2.11e-17 81.6
MS.gene073379.t1 MTR_2g436380 55.000 60 27 0 231 290 1 60 1.30e-14 74.3
MS.gene073379.t1 MTR_2g437680 78.788 33 7 0 237 269 2 34 6.22e-12 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene073379.t1 AT5G07900 30.748 361 241 7 30 384 43 400 1.14e-52 181
MS.gene073379.t1 AT1G21150 31.804 327 212 5 57 377 57 378 1.11e-45 162
MS.gene073379.t1 AT1G21150 31.343 335 219 5 49 377 13 342 2.69e-45 160
MS.gene073379.t1 AT1G21150 31.804 327 212 5 57 377 121 442 7.45e-45 161
MS.gene073379.t1 AT1G61970 27.119 354 212 9 57 371 53 399 4.82e-30 120
MS.gene073379.t1 AT1G61970 27.119 354 212 9 57 371 53 399 4.82e-30 120
MS.gene073379.t1 AT1G61970 27.119 354 212 9 57 371 53 399 4.82e-30 120
MS.gene073379.t1 AT1G61970 27.119 354 212 9 57 371 53 399 4.82e-30 120
MS.gene073379.t1 AT1G61970 27.119 354 212 9 57 371 53 399 4.82e-30 120
MS.gene073379.t1 AT1G61970 27.119 354 212 9 57 371 53 399 4.82e-30 120
MS.gene073379.t1 AT1G61970 27.119 354 212 9 57 371 53 399 4.82e-30 120
MS.gene073379.t1 AT1G61990 28.056 360 200 8 57 373 53 396 7.42e-30 119
MS.gene073379.t1 AT1G61990 28.056 360 200 8 57 373 53 396 7.42e-30 119
MS.gene073379.t1 AT1G61980 25.824 364 220 9 57 379 53 407 2.35e-28 115
MS.gene073379.t1 AT1G61980 25.824 364 220 9 57 379 53 407 2.35e-28 115
MS.gene073379.t1 AT1G61980 25.824 364 220 9 57 379 53 407 2.35e-28 115
MS.gene073379.t1 AT5G64950 26.050 357 250 6 38 383 22 375 3.91e-26 108
MS.gene073379.t1 AT3G46950 28.358 268 181 5 35 300 30 288 2.04e-25 107
MS.gene073379.t1 AT1G62120 25.956 366 220 8 57 386 57 407 7.39e-25 105
MS.gene073379.t1 AT1G62150 23.058 399 230 10 57 382 59 453 9.02e-22 97.4
MS.gene073379.t1 AT1G62010 25.150 334 197 6 89 386 69 385 8.35e-21 94.0
MS.gene073379.t1 AT1G61960 28.862 246 170 4 57 301 53 294 9.86e-21 94.0
MS.gene073379.t1 AT1G62110 24.444 360 244 9 34 381 30 373 4.74e-18 86.3
MS.gene073379.t1 AT1G62085 25.602 332 229 9 57 381 56 376 1.60e-16 81.6
MS.gene073379.t1 AT1G62085 25.602 332 229 9 57 381 56 376 1.60e-16 81.6
MS.gene073379.t1 AT5G23930 22.642 424 243 8 27 375 22 435 1.81e-16 81.3
MS.gene073379.t1 AT1G56380 24.121 398 221 15 55 395 26 399 1.33e-14 75.5
MS.gene073379.t1 AT1G56380 24.121 398 221 15 55 395 15 388 1.50e-14 75.1

Find 70 sgRNAs with CRISPR-Local

Find 91 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGAGCAAGTTTGTCTTTA+AGG 0.043675 2.4:-54548863 MS.gene073379:CDS
ATCAATTTGATGACTGATTT+TGG 0.089088 2.4:-54549357 MS.gene073379:CDS
AAAAGAGGGTTGTTGAATTT+TGG 0.120653 2.4:+54549894 None:intergenic
CTGAAAAGGCCATCTATATT+TGG 0.156515 2.4:-54549303 MS.gene073379:CDS
AAGAAATTGATAACTGAATT+AGG 0.176367 2.4:+54549693 None:intergenic
GAGAATCTTGTGAGTGAAAA+TGG 0.247387 2.4:+54549852 None:intergenic
GATCCTTCAATGGCTACTTT+TGG 0.277843 2.4:-54549231 MS.gene073379:CDS
TTGGAAGAAGTTCATGGTTT+AGG 0.289669 2.4:-54549258 MS.gene073379:CDS
TGGCATGCCATTCACTAATT+AGG 0.298571 2.4:-54548773 None:intergenic
GAAAATGGGAATGAGAAGTT+TGG 0.301232 2.4:+54549867 None:intergenic
CTTTCCCAGAATGTTGCTTT+AGG 0.307195 2.4:-54549942 MS.gene073379:CDS
TGATGCCTAAAGCAACATTC+TGG 0.327907 2.4:+54549937 None:intergenic
CCAATTGGGTTGGGATTCCT+TGG 0.333577 2.4:-54549034 MS.gene073379:CDS
TCCAAACCATGTTGAAGAAA+TGG 0.334748 2.4:-54549968 None:intergenic
AACTGATTTGATTAAGTCAT+TGG 0.339262 2.4:-54549277 MS.gene073379:CDS
GCAAAGAATGATATCCTTGT+TGG 0.359776 2.4:+54549437 None:intergenic
TTGTTCTCCTTTGTGTATGC+AGG 0.375653 2.4:+54548796 None:intergenic
CAAAGCTTTCAGCAACAATC+AGG 0.377916 2.4:-54549739 MS.gene073379:CDS
ACTAAATGTCCACATATGTT+TGG 0.382004 2.4:-54549006 MS.gene073379:CDS
ATCAGATGAAGTAGCACCTT+TGG 0.385922 2.4:+54549557 None:intergenic
GAGAAGTTTGGGTTCAAAAG+AGG 0.413500 2.4:+54549879 None:intergenic
TTGGGTCAACCAATTGGGTT+GGG 0.418889 2.4:-54549043 MS.gene073379:CDS
CTTGGGCAAAATTATATTGT+GGG 0.422253 2.4:+54549596 None:intergenic
AAAATGGGAATGAGAAGTTT+GGG 0.423820 2.4:+54549868 None:intergenic
ATTAGCCACAACAAGGTGAT+AGG 0.433161 2.4:+54549380 None:intergenic
AAGTCATTGGAAGAAGTTCA+TGG 0.433750 2.4:-54549264 MS.gene073379:CDS
TTTCTAGATTGCTTCTGAAA+AGG 0.437099 2.4:-54549317 MS.gene073379:CDS
TCAGTTGAACCAAATATAGA+TGG 0.441181 2.4:+54549294 None:intergenic
CCAAGGAATCCCAACCCAAT+TGG 0.447231 2.4:+54549034 None:intergenic
TTTAGGATTTGATCCTTCAA+TGG 0.450730 2.4:-54549241 MS.gene073379:CDS
TCTAATGATGATTCGTATGT+CGG 0.457132 2.4:+54549647 None:intergenic
TCGCAAAATTCGAGGGTTTG+CGG 0.479537 2.4:+54549518 None:intergenic
AGAAGTTTGGGTTCAAAAGA+GGG 0.481605 2.4:+54549880 None:intergenic
GTTGCATCCTAGTTTGATGT+TGG 0.488218 2.4:-54549100 MS.gene073379:CDS
GATGCCTAAAGCAACATTCT+GGG 0.494312 2.4:+54549938 None:intergenic
TTTGGGTCAACCAATTGGGT+TGG 0.496217 2.4:-54549044 MS.gene073379:CDS
AAGCTACTTCGCAAAATTCG+AGG 0.497556 2.4:+54549510 None:intergenic
TCCCCAAAAGTAGCCATTGA+AGG 0.500530 2.4:+54549228 None:intergenic
ACTTGGGCAAAATTATATTG+TGG 0.500709 2.4:+54549595 None:intergenic
TTGGTTATAGTTTACATCAA+AGG 0.507419 2.4:-54548987 MS.gene073379:CDS
TAATTCCTATCACCTTGTTG+TGG 0.508203 2.4:-54549385 MS.gene073379:CDS
GAAATCACCTAATTAGTGAA+TGG 0.511658 2.4:+54548766 None:intergenic
AATTTCTCAGAATGAGCAAA+TGG 0.512809 2.4:+54548889 None:intergenic
AAAGCTTTGAGAGCAGATTG+AGG 0.518120 2.4:+54549753 None:intergenic
AATTGCAAAACTGAGGCCCT+TGG 0.520839 2.4:+54548958 None:intergenic
AGAATCTTGTGAGTGAAAAT+GGG 0.534017 2.4:+54549853 None:intergenic
AAACTATAACCAAACATATG+TGG 0.543018 2.4:+54548997 None:intergenic
TTCTGACTCTGATGTTGTGG+TGG 0.553341 2.4:+54549830 None:intergenic
ATTGAAGCCAACATCAAACT+AGG 0.554840 2.4:+54549093 None:intergenic
TGATTCTGACTCTGATGTTG+TGG 0.556453 2.4:+54549827 None:intergenic
TTATCTATTAAAGCTATATG+TGG 0.557272 2.4:-54548830 MS.gene073379:CDS
TACATCAAAGGATCATTCCA+AGG 0.557901 2.4:-54548975 MS.gene073379:CDS
TGAAATCAAAATTGTTGATG+AGG 0.559601 2.4:+54549778 None:intergenic
AGCTACTTCGCAAAATTCGA+GGG 0.561434 2.4:+54549511 None:intergenic
ATGAGGTACGATACAGCAAA+TGG 0.565479 2.4:+54549795 None:intergenic
TTGGGCAAAATTATATTGTG+GGG 0.586920 2.4:+54549597 None:intergenic
AAGAAACCATTTCTTCAACA+TGG 0.592220 2.4:+54549962 None:intergenic
TGGACATTTAGTAAGTTCCA+AGG 0.592713 2.4:+54549017 None:intergenic
GAGCAAGTTTGTCTTTAAGG+AGG 0.592819 2.4:-54548860 MS.gene073379:CDS
ATGTATGAGTAAAACACGGT+GGG 0.613074 2.4:-54549187 MS.gene073379:CDS
ACATCAAAGGATCATTCCAA+GGG 0.634178 2.4:-54548974 MS.gene073379:CDS
CAAAAGAAATTGCAAAACTG+AGG 0.646915 2.4:+54548951 None:intergenic
AATTGATATTAGCCACAACA+AGG 0.659212 2.4:+54549373 None:intergenic
AATGAAACCTGCATACACAA+AGG 0.664808 2.4:-54548803 MS.gene073379:CDS
GGTTGTAATGAAAGTAACCA+TGG 0.672923 2.4:+54549618 None:intergenic
TCATCATTAGAAAAGCGCCA+TGG 0.688476 2.4:-54549635 MS.gene073379:CDS
AGGTACGATACAGCAAATGG+TGG 0.691130 2.4:+54549798 None:intergenic
GCATACACAAAGGAGAACAA+TGG 0.692068 2.4:-54548793 MS.gene073379:CDS
AATGTATGAGTAAAACACGG+TGG 0.729131 2.4:-54549188 MS.gene073379:CDS
AGAAATGTATGAGTAAAACA+CGG 0.759128 2.4:-54549191 MS.gene073379:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATAGAAAAAATTCAAACTT+GGG + chr2.4:54549158-54549177 None:intergenic 20.0%
!! TTATCTATTAAAGCTATATG+TGG - chr2.4:54549904-54549923 MS.gene073379:CDS 20.0%
!!! AAGAAATTGATAACTGAATT+AGG + chr2.4:54549044-54549063 None:intergenic 20.0%
!!! AAGTTGATGTTTTTAAGAAA+TGG - chr2.4:54549576-54549595 MS.gene073379:CDS 20.0%
!!! AGTTGATGTTTTTAAGAAAT+GGG - chr2.4:54549577-54549596 MS.gene073379:CDS 20.0%
!!! TAATTTTGTGATGCATTTTT+GGG - chr2.4:54549673-54549692 MS.gene073379:CDS 20.0%
!!! TTAATTTTGTGATGCATTTT+TGG - chr2.4:54549672-54549691 MS.gene073379:CDS 20.0%
!!! TTTGAATTTTTTCTATCCAA+AGG - chr2.4:54549161-54549180 MS.gene073379:CDS 20.0%
! AAACTATAACCAAACATATG+TGG + chr2.4:54549740-54549759 None:intergenic 25.0%
! AGAAATGTATGAGTAAAACA+CGG - chr2.4:54549543-54549562 MS.gene073379:CDS 25.0%
! GGATAGAAAAAATTCAAACT+TGG + chr2.4:54549159-54549178 None:intergenic 25.0%
! TACTGAACAATTGAAAAAGA+GGG + chr2.4:54549265-54549284 None:intergenic 25.0%
! TGAAATCAAAATTGTTGATG+AGG + chr2.4:54548959-54548978 None:intergenic 25.0%
! TTGGTTATAGTTTACATCAA+AGG - chr2.4:54549747-54549766 MS.gene073379:CDS 25.0%
!! TGTTTTACTCATACATTTCT+TGG + chr2.4:54549543-54549562 None:intergenic 25.0%
!! TTGCAATTTCTTTTGATGAA+AGG - chr2.4:54549791-54549810 MS.gene073379:CDS 25.0%
!!! AACTGATTTGATTAAGTCAT+TGG - chr2.4:54549457-54549476 MS.gene073379:CDS 25.0%
!!! AAGCTTTTTTTCAAGCATTT+AGG - chr2.4:54549612-54549631 MS.gene073379:CDS 25.0%
!!! ATCAATTTGATGACTGATTT+TGG - chr2.4:54549377-54549396 MS.gene073379:CDS 25.0%
!!! GTTGATGTTTTTAAGAAATG+GGG - chr2.4:54549578-54549597 MS.gene073379:CDS 25.0%
AAAATGGGAATGAGAAGTTT+GGG + chr2.4:54548869-54548888 None:intergenic 30.0%
AATTGATATTAGCCACAACA+AGG + chr2.4:54549364-54549383 None:intergenic 30.0%
AATTTCTCAGAATGAGCAAA+TGG + chr2.4:54549848-54549867 None:intergenic 30.0%
ACTAAATGTCCACATATGTT+TGG - chr2.4:54549728-54549747 MS.gene073379:CDS 30.0%
ACTTGGGCAAAATTATATTG+TGG + chr2.4:54549142-54549161 None:intergenic 30.0%
AGAATCTTGTGAGTGAAAAT+GGG + chr2.4:54548884-54548903 None:intergenic 30.0%
CAAAAGAAATTGCAAAACTG+AGG + chr2.4:54549786-54549805 None:intergenic 30.0%
CTACTGAACAATTGAAAAAG+AGG + chr2.4:54549266-54549285 None:intergenic 30.0%
CTTGGGCAAAATTATATTGT+GGG + chr2.4:54549141-54549160 None:intergenic 30.0%
TCAGTTGAACCAAATATAGA+TGG + chr2.4:54549443-54549462 None:intergenic 30.0%
TCTAATGATGATTCGTATGT+CGG + chr2.4:54549090-54549109 None:intergenic 30.0%
TTGGGCAAAATTATATTGTG+GGG + chr2.4:54549140-54549159 None:intergenic 30.0%
! AAAAGAGGGTTGTTGAATTT+TGG + chr2.4:54548843-54548862 None:intergenic 30.0%
! AAAGAGGGTTGTTGAATTTT+GGG + chr2.4:54548842-54548861 None:intergenic 30.0%
! TTTAGGATTTGATCCTTCAA+TGG - chr2.4:54549493-54549512 MS.gene073379:CDS 30.0%
! TTTCTAGATTGCTTCTGAAA+AGG - chr2.4:54549417-54549436 MS.gene073379:CDS 30.0%
!! ATGTTTTTAAGAAATGGGGT+TGG - chr2.4:54549582-54549601 MS.gene073379:CDS 30.0%
!! TAGGTTTTTGAAAACCAACA+AGG - chr2.4:54549283-54549302 MS.gene073379:CDS 30.0%
!!! CTCTTTTTCAATTGTTCAGT+AGG - chr2.4:54549264-54549283 MS.gene073379:CDS 30.0%
AAGTCATTGGAAGAAGTTCA+TGG - chr2.4:54549470-54549489 MS.gene073379:CDS 35.0%
AATGAAACCTGCATACACAA+AGG - chr2.4:54549931-54549950 MS.gene073379:CDS 35.0%
AATGTATGAGTAAAACACGG+TGG - chr2.4:54549546-54549565 MS.gene073379:CDS 35.0%
ACATCAAAGGATCATTCCAA+GGG - chr2.4:54549760-54549779 MS.gene073379:CDS 35.0%
ATGTATGAGTAAAACACGGT+GGG - chr2.4:54549547-54549566 MS.gene073379:CDS 35.0%
ATTGAAGCCAACATCAAACT+AGG + chr2.4:54549644-54549663 None:intergenic 35.0%
CTGAAAAGGCCATCTATATT+TGG - chr2.4:54549431-54549450 MS.gene073379:CDS 35.0%
CTTGAGCAAGTTTGTCTTTA+AGG - chr2.4:54549871-54549890 MS.gene073379:CDS 35.0%
GAAAATGGGAATGAGAAGTT+TGG + chr2.4:54548870-54548889 None:intergenic 35.0%
GAGAATCTTGTGAGTGAAAA+TGG + chr2.4:54548885-54548904 None:intergenic 35.0%
GCAAAGAATGATATCCTTGT+TGG + chr2.4:54549300-54549319 None:intergenic 35.0%
GGTTGTAATGAAAGTAACCA+TGG + chr2.4:54549119-54549138 None:intergenic 35.0%
TAATTCCTATCACCTTGTTG+TGG - chr2.4:54549349-54549368 MS.gene073379:CDS 35.0%
TACATCAAAGGATCATTCCA+AGG - chr2.4:54549759-54549778 MS.gene073379:CDS 35.0%
TGGACATTTAGTAAGTTCCA+AGG + chr2.4:54549720-54549739 None:intergenic 35.0%
TTGGAAGAAGTTCATGGTTT+AGG - chr2.4:54549476-54549495 MS.gene073379:CDS 35.0%
! AAGAGGGTTGTTGAATTTTG+GGG + chr2.4:54548841-54548860 None:intergenic 35.0%
! AGAAGTTTGGGTTCAAAAGA+GGG + chr2.4:54548857-54548876 None:intergenic 35.0%
!!! ATCCTTCAATGGCTACTTTT+GGG - chr2.4:54549504-54549523 MS.gene073379:CDS 35.0%
!!! CATTTTTGGGTCAACCAATT+GGG - chr2.4:54549686-54549705 MS.gene073379:CDS 35.0%
!!! TTTTGGGGTTGTTGATTTTG+TGG + chr2.4:54548826-54548845 None:intergenic 35.0%
AAGCTACTTCGCAAAATTCG+AGG + chr2.4:54549227-54549246 None:intergenic 40.0%
AGCTACTTCGCAAAATTCGA+GGG + chr2.4:54549226-54549245 None:intergenic 40.0%
ATCAGATGAAGTAGCACCTT+TGG + chr2.4:54549180-54549199 None:intergenic 40.0%
ATGAGGTACGATACAGCAAA+TGG + chr2.4:54548942-54548961 None:intergenic 40.0%
ATTAGCCACAACAAGGTGAT+AGG + chr2.4:54549357-54549376 None:intergenic 40.0%
CAAAGCTTTCAGCAACAATC+AGG - chr2.4:54548995-54549014 MS.gene073379:CDS 40.0%
GATGCCTAAAGCAACATTCT+GGG + chr2.4:54548799-54548818 None:intergenic 40.0%
GCATACACAAAGGAGAACAA+TGG - chr2.4:54549941-54549960 MS.gene073379:CDS 40.0%
GTTGCATCCTAGTTTGATGT+TGG - chr2.4:54549634-54549653 MS.gene073379:CDS 40.0%
TGATGCCTAAAGCAACATTC+TGG + chr2.4:54548800-54548819 None:intergenic 40.0%
TGATTCTGACTCTGATGTTG+TGG + chr2.4:54548910-54548929 None:intergenic 40.0%
TGTCGGAGTGTGAAAAATCA+CGG + chr2.4:54549073-54549092 None:intergenic 40.0%
TTGTTCTCCTTTGTGTATGC+AGG + chr2.4:54549941-54549960 None:intergenic 40.0%
! GAGAAGTTTGGGTTCAAAAG+AGG + chr2.4:54548858-54548877 None:intergenic 40.0%
! GAGCAAGTTTGTCTTTAAGG+AGG - chr2.4:54549874-54549893 MS.gene073379:CDS 40.0%
! TCGAATTTTGCGAAGTAGCT+TGG - chr2.4:54549226-54549245 MS.gene073379:CDS 40.0%
!! AAAGCTTTGAGAGCAGATTG+AGG + chr2.4:54548984-54549003 None:intergenic 40.0%
!! CTTTCCCAGAATGTTGCTTT+AGG - chr2.4:54548792-54548811 MS.gene073379:CDS 40.0%
!! GATCCTTCAATGGCTACTTT+TGG - chr2.4:54549503-54549522 MS.gene073379:CDS 40.0%
!! TCATCATTAGAAAAGCGCCA+TGG - chr2.4:54549099-54549118 MS.gene073379:CDS 40.0%
!!! GCATTTTTGGGTCAACCAAT+TGG - chr2.4:54549685-54549704 MS.gene073379:CDS 40.0%
!!! TCCTTCAATGGCTACTTTTG+GGG - chr2.4:54549505-54549524 MS.gene073379:CDS 40.0%
AATTGCAAAACTGAGGCCCT+TGG + chr2.4:54549779-54549798 None:intergenic 45.0%
AGGTACGATACAGCAAATGG+TGG + chr2.4:54548939-54548958 None:intergenic 45.0%
TCCCCAAAAGTAGCCATTGA+AGG + chr2.4:54549509-54549528 None:intergenic 45.0%
TCGCAAAATTCGAGGGTTTG+CGG + chr2.4:54549219-54549238 None:intergenic 45.0%
TTCTGACTCTGATGTTGTGG+TGG + chr2.4:54548907-54548926 None:intergenic 45.0%
TTGGGTCAACCAATTGGGTT+GGG - chr2.4:54549691-54549710 MS.gene073379:CDS 45.0%
TTTGGGTCAACCAATTGGGT+TGG - chr2.4:54549690-54549709 MS.gene073379:CDS 45.0%
CCAAGGAATCCCAACCCAAT+TGG + chr2.4:54549703-54549722 None:intergenic 50.0%
!! CCAATTGGGTTGGGATTCCT+TGG - chr2.4:54549700-54549719 MS.gene073379:CDS 50.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 54548774 54549982 54548774 ID=MS.gene073379
chr2.4 mRNA 54548774 54549982 54548774 ID=MS.gene073379.t1;Parent=MS.gene073379
chr2.4 exon 54548774 54549982 54548774 ID=MS.gene073379.t1.exon1;Parent=MS.gene073379.t1
chr2.4 CDS 54548774 54549982 54548774 ID=cds.MS.gene073379.t1;Parent=MS.gene073379.t1
Gene Sequence

>MS.gene073379

ATGTTGAAGAAATGGTTTCTTTCCCAGAATGTTGCTTTAGGCATCATCACCACAAAATCAACAACCCCAAAATTCAACAACCCTCTTTTGAACCCAAACTTCTCATTCCCATTTTCACTCACAAGATTCTCCACCACAACATCAGAGTCAGAATCAGTCACACCACCATTTGCTGTATCGTACCTCATCAACAATTTTGATTTCACTCCTCAATCTGCTCTCAAAGCTTTCAGCAACAATCAGGTTCTTTTCAAATCTGCAGAAAATCCTAATTCAGTTATCAATTTCTTCAAAAACCGTGATTTTTCACACTCCGACATACGAATCATCATTAGAAAAGCGCCATGGTTACTTTCATTACAACCCCACAATATAATTTTGCCCAAGTTTGAATTTTTTCTATCCAAAGGTGCTACTTCATCTGATATTGTTTCATTCATAACCGCAAACCCTCGAATTTTGCGAAGTAGCTTGGAGAAACGAATAATCCCTCTTTTTCAATTGTTCAGTAGGTTTTTGAAAACCAACAAGGATATCATTCTTTGCTTACTTCGACATTCGACTTATGTTACTTTTAATTCCTATCACCTTGTTGTGGCTAATATCAATTTGATGACTGATTTTGGAGTTTCTGATTCTGTCATTTCTAGATTGCTTCTGAAAAGGCCATCTATATTTGGTTCAACTGATTTGATTAAGTCATTGGAAGAAGTTCATGGTTTAGGATTTGATCCTTCAATGGCTACTTTTGGGGATGCTTTGTTTGCCAAGAAATGTATGAGTAAAACACGGTGGGATGAGAAAGTTGATGTTTTTAAGAAATGGGGTTGGTTTGATGAAGCTTTTTTTCAAGCATTTAGGTTGCATCCTAGTTTGATGTTGGCTTCAATTGAAAAGATTAATTTTGTGATGCATTTTTGGGTCAACCAATTGGGTTGGGATTCCTTGGAACTTACTAAATGTCCACATATGTTTGGTTATAGTTTACATCAAAGGATCATTCCAAGGGCCTCAGTTTTGCAATTTCTTTTGATGAAAGGTTTGCGAGATAAGAATGAAAGCTTAGTTACACCATTTGCTCATTCTGAGAAATTTTTCTTGAGCAAGTTTGTCTTTAAGGAGGAGTCTGATTATCTATTAAAGCTATATGTGGAAAAAATGAAACCTGCATACACAAAGGAGAACAATGGCATGCCATTCACTAATTAG
Protein sequence

>MS.gene073379.t1

MLKKWFLSQNVALGIITTKSTTPKFNNPLLNPNFSFPFSLTRFSTTTSESESVTPPFAVSYLINNFDFTPQSALKAFSNNQVLFKSAENPNSVINFFKNRDFSHSDIRIIIRKAPWLLSLQPHNIILPKFEFFLSKGATSSDIVSFITANPRILRSSLEKRIIPLFQLFSRFLKTNKDIILCLLRHSTYVTFNSYHLVVANINLMTDFGVSDSVISRLLLKRPSIFGSTDLIKSLEEVHGLGFDPSMATFGDALFAKKCMSKTRWDEKVDVFKKWGWFDEAFFQAFRLHPSLMLASIEKINFVMHFWVNQLGWDSLELTKCPHMFGYSLHQRIIPRASVLQFLLMKGLRDKNESLVTPFAHSEKFFLSKFVFKEESDYLLKLYVEKMKPAYTKENNGMPFTN