AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene52426

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52426.t1 MTR_2g437020 92.167 383 22 1 1 375 1 383 0.0 712
MS.gene52426.t1 MTR_2g437060 66.835 395 104 6 2 372 4 395 0.0 507
MS.gene52426.t1 MTR_2g437080 65.183 382 119 4 5 374 3 382 1.03e-175 494
MS.gene52426.t1 MTR_2g436400 65.691 376 111 3 7 366 8 381 1.44e-174 491
MS.gene52426.t1 MTR_2g436440 66.667 369 113 3 15 375 23 389 3.99e-169 478
MS.gene52426.t1 MTR_2g437040 66.852 359 116 2 15 372 24 380 1.15e-167 473
MS.gene52426.t1 MTR_2g437030 66.216 370 113 3 16 375 102 469 4.58e-166 473
MS.gene52426.t1 MTR_2g437120 56.032 373 154 7 2 370 25 391 2.68e-129 377
MS.gene52426.t1 MTR_4g119550 54.467 347 152 4 27 371 47 389 3.46e-125 366
MS.gene52426.t1 MTR_2g437960 54.942 344 149 3 33 372 55 396 5.14e-125 366
MS.gene52426.t1 MTR_2g437960 54.783 345 150 3 33 373 55 397 5.72e-125 367
MS.gene52426.t1 MTR_2g437170 53.743 374 151 7 17 370 27 398 3.21e-123 362
MS.gene52426.t1 MTR_2g437160 52.174 368 160 4 17 370 38 403 2.07e-122 360
MS.gene52426.t1 MTR_2g437150 52.941 374 154 7 17 370 27 398 4.43e-122 358
MS.gene52426.t1 MTR_2g437200 50.794 378 143 5 24 362 25 398 1.23e-121 357
MS.gene52426.t1 MTR_2g438010 52.991 351 155 4 24 366 59 407 1.24e-120 355
MS.gene52426.t1 MTR_2g437260 50.733 341 165 2 27 366 32 370 1.56e-119 352
MS.gene52426.t1 MTR_2g437130 52.066 363 167 4 9 370 23 379 6.87e-118 347
MS.gene52426.t1 MTR_2g437180 52.450 347 159 4 27 370 45 388 6.95e-118 347
MS.gene52426.t1 MTR_2g437990 52.000 350 163 4 24 370 43 390 2.05e-117 347
MS.gene52426.t1 MTR_2g076320 52.958 355 157 4 24 370 39 391 3.78e-117 346
MS.gene52426.t1 MTR_2g437100 53.514 370 146 7 17 362 28 395 4.60e-116 343
MS.gene52426.t1 MTR_2g437240 49.740 384 150 5 26 370 27 406 7.90e-114 338
MS.gene52426.t1 MTR_2g436460 49.856 347 168 4 21 365 37 379 1.79e-109 325
MS.gene52426.t1 MTR_2g438020 47.884 378 154 5 30 368 70 443 1.47e-107 325
MS.gene52426.t1 MTR_2g437940 48.087 366 148 5 17 370 27 362 7.30e-104 311
MS.gene52426.t1 MTR_4g119580 45.217 345 184 3 17 360 30 370 2.34e-95 289
MS.gene52426.t1 MTR_2g019840 46.791 374 188 7 3 371 13 380 1.45e-93 285
MS.gene52426.t1 MTR_4g120380 45.869 351 179 5 13 360 28 370 4.55e-90 276
MS.gene52426.t1 MTR_4g120380 46.526 331 167 4 13 341 28 350 1.52e-87 271
MS.gene52426.t1 MTR_2g019810 47.463 335 165 7 32 362 32 359 5.38e-87 268
MS.gene52426.t1 MTR_2g437090 69.412 170 51 1 206 374 1 170 1.84e-83 251
MS.gene52426.t1 MTR_2g436370 60.825 194 61 1 1 179 1 194 1.61e-70 220
MS.gene52426.t1 MTR_2g437160 55.446 202 84 3 173 370 113 312 8.39e-67 214
MS.gene52426.t1 MTR_2g437160 44.248 113 51 2 17 117 38 150 8.69e-19 86.7
MS.gene52426.t1 MTR_3g450500 33.535 331 210 3 32 356 39 365 6.97e-52 177
MS.gene52426.t1 MTR_4g119570 37.349 249 120 3 111 358 14 227 2.15e-43 150
MS.gene52426.t1 MTR_4g007490 32.659 346 212 9 9 342 13 349 2.59e-43 154
MS.gene52426.t1 MTR_8g080990 29.630 297 202 2 64 356 74 367 2.02e-31 122
MS.gene52426.t1 MTR_8g081000 26.012 346 241 4 26 367 50 384 6.62e-28 113
MS.gene52426.t1 MTR_8g081000 26.012 346 241 4 26 367 50 384 7.76e-28 113
MS.gene52426.t1 MTR_8g081000 26.557 305 216 2 64 367 87 384 8.89e-28 113
MS.gene52426.t1 MTR_4g049400 47.863 117 49 3 23 131 38 150 1.84e-25 103
MS.gene52426.t1 MTR_2g436380 70.492 61 18 0 206 266 1 61 1.89e-23 99.0
MS.gene52426.t1 MTR_3g085240 66.000 50 17 0 265 314 176 225 1.95e-15 75.9
MS.gene52426.t1 MTR_3g085240 36.242 149 75 6 14 153 33 170 3.83e-14 72.0
MS.gene52426.t1 MTR_8g012210 21.176 340 236 11 21 347 13 333 7.52e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52426.t1 AT5G07900 33.803 355 222 6 11 359 52 399 5.58e-61 202
MS.gene52426.t1 AT1G21150 30.547 311 209 3 21 327 9 316 3.41e-43 154
MS.gene52426.t1 AT1G21150 31.667 300 198 3 32 327 56 352 1.78e-42 152
MS.gene52426.t1 AT1G21150 31.667 300 198 3 32 327 120 416 8.35e-42 152
MS.gene52426.t1 AT5G64950 28.296 311 205 5 20 318 24 328 7.98e-32 124
MS.gene52426.t1 AT1G61980 29.888 358 200 9 32 347 52 400 2.81e-31 123
MS.gene52426.t1 AT1G61980 29.888 358 200 9 32 347 52 400 2.81e-31 123
MS.gene52426.t1 AT1G61980 29.888 358 200 9 32 347 52 400 2.81e-31 123
MS.gene52426.t1 AT1G61970 28.000 350 207 6 33 343 53 396 3.60e-31 122
MS.gene52426.t1 AT1G61970 28.000 350 207 6 33 343 53 396 3.60e-31 122
MS.gene52426.t1 AT1G61970 28.000 350 207 6 33 343 53 396 3.60e-31 122
MS.gene52426.t1 AT1G61970 28.000 350 207 6 33 343 53 396 3.60e-31 122
MS.gene52426.t1 AT1G61970 28.000 350 207 6 33 343 53 396 3.60e-31 122
MS.gene52426.t1 AT1G61970 28.000 350 207 6 33 343 53 396 3.60e-31 122
MS.gene52426.t1 AT1G61970 28.000 350 207 6 33 343 53 396 3.60e-31 122
MS.gene52426.t1 AT1G61990 28.701 331 195 5 33 330 53 375 1.28e-30 121
MS.gene52426.t1 AT1G61990 28.701 331 195 5 33 330 53 375 1.28e-30 121
MS.gene52426.t1 AT1G62120 29.607 331 187 9 33 323 57 381 1.83e-28 115
MS.gene52426.t1 AT3G46950 32.319 263 159 7 24 278 40 291 2.62e-26 109
MS.gene52426.t1 AT1G62085 26.799 403 201 13 8 322 18 414 5.91e-26 108
MS.gene52426.t1 AT1G62085 26.799 403 201 13 8 322 18 414 5.91e-26 108
MS.gene52426.t1 AT5G23930 26.555 418 217 11 7 342 18 427 8.15e-25 105
MS.gene52426.t1 AT1G62010 27.797 295 169 4 67 323 71 359 4.10e-24 103
MS.gene52426.t1 AT1G62110 28.421 285 183 6 7 276 17 295 2.85e-23 101
MS.gene52426.t1 AT1G61960 28.929 280 180 6 10 276 21 294 4.98e-22 97.4
MS.gene52426.t1 AT1G62150 25.581 258 175 4 26 275 52 300 1.30e-19 90.5
MS.gene52426.t1 AT1G79220 23.659 317 221 10 68 372 82 389 2.51e-11 65.1

Find 85 sgRNAs with CRISPR-Local

Find 104 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTATTCAGGCTTGCTTTA+AGG 0.167218 2.3:-54445877 None:intergenic
TTAATTTACTCATGAACTTT+TGG 0.214050 2.3:+54446314 MS.gene52426:CDS
TTTCCTGCAACCCTTCTAAA+AGG 0.220666 2.3:+54445771 MS.gene52426:CDS
GAAATTGGTGGAGGAATTAA+AGG 0.238950 2.3:+54446111 MS.gene52426:CDS
CTCACCTTCTTTAGAAACTA+TGG 0.240194 2.3:+54445698 MS.gene52426:CDS
GGTGGAGGAATTAAAGGATT+TGG 0.242361 2.3:+54446117 MS.gene52426:CDS
ATTGTAAGTGGAGGAAAGTT+TGG 0.277663 2.3:-54445639 None:intergenic
CAGGCTTGCTTTAAGGATCT+TGG 0.285333 2.3:-54445870 None:intergenic
GTTTCTTGATACATGTATAA+AGG 0.301142 2.3:+54446510 MS.gene52426:CDS
CCATGTTTAACAATATATTA+TGG 0.307920 2.3:+54445489 None:intergenic
AGGCTTGCTTTAAGGATCTT+GGG 0.308598 2.3:-54445869 None:intergenic
GTGGAGGAATTAAAGGATTT+GGG 0.314616 2.3:+54446118 MS.gene52426:CDS
ATTCGCAATCCATCTTTCTT+TGG 0.319814 2.3:+54445968 MS.gene52426:CDS
AAAGAGGGTTAGGGTTTAGA+AGG 0.320241 2.3:-54445526 None:intergenic
AGACCAACCCCACTTCTTAA+AGG 0.324708 2.3:-54446227 None:intergenic
TACATGTATAAAGGGTATTA+AGG 0.329386 2.3:+54446519 MS.gene52426:CDS
GACACATGACATGCTGAAAT+TGG 0.353711 2.3:+54446096 MS.gene52426:CDS
TTGGGTCAATCAGTTGGGTT+GGG 0.365374 2.3:+54446333 MS.gene52426:CDS
ATGTTCTACAAGCGTTTAGA+AGG 0.384175 2.3:+54446257 MS.gene52426:CDS
ACTCCTTCAAAATCAACCTT+TGG 0.392434 2.3:+54446145 MS.gene52426:CDS
TTTCTTGATACATGTATAAA+GGG 0.393177 2.3:+54446511 MS.gene52426:CDS
TAGCCATGGTTCCTTTGAAA+TGG 0.395647 2.3:-54445747 None:intergenic
GTCAGAGTTAGAAGCACCTT+TGG 0.395726 2.3:-54445822 None:intergenic
TTGCAATATCTTCTGAAGAA+AGG 0.412458 2.3:+54446433 MS.gene52426:CDS
TGAAATGGTAAGACGTAGTT+GGG 0.418042 2.3:-54445732 None:intergenic
AGCTTCTCAGGCACTACAAA+TGG 0.425476 2.3:-54446487 None:intergenic
AAATGGTGGAAAAGAGGGTT+AGG 0.427305 2.3:-54445536 None:intergenic
GAATCTATAAATCAATTGAT+AGG 0.434987 2.3:-54445912 None:intergenic
TTATCTATTAAAGTTGTATG+AGG 0.446208 2.3:+54446549 MS.gene52426:CDS
TTTCTTTAAGTTTCGAAAAG+AGG 0.455763 2.3:+54446389 MS.gene52426:CDS
TTGAAATGGTAAGACGTAGT+TGG 0.462482 2.3:-54445733 None:intergenic
AATGCTTTGCGTAAGGAGTC+AGG 0.470114 2.3:+54446060 MS.gene52426:CDS
GTATCAAGAAACAGCTTCTC+AGG 0.470819 2.3:-54446499 None:intergenic
CTGAAGTGTTGGTGGAGAAA+TGG 0.470938 2.3:-54445553 None:intergenic
GAAAGTTTGGAAGCAGATTG+TGG 0.472463 2.3:-54445626 None:intergenic
CTTGAAACAAACATTGTAAG+TGG 0.473763 2.3:-54445651 None:intergenic
AAGAAGGTGAGAACAGAGTC+AGG 0.478602 2.3:-54445686 None:intergenic
TCCTACCTCATCAACAACTT+TGG 0.478665 2.3:+54445596 MS.gene52426:CDS
TTTGGGTCAATCAGTTGGGT+TGG 0.480856 2.3:+54446332 MS.gene52426:CDS
TTCCTGCAACCCTTCTAAAA+GGG 0.482738 2.3:+54445772 MS.gene52426:CDS
GTTTGAGTCGGCCACTCCAT+TGG 0.486888 2.3:-54446029 None:intergenic
AAAGTTTGGAAGCAGATTGT+GGG 0.488544 2.3:-54445625 None:intergenic
GAAACCATAGTTTCTAAAGA+AGG 0.490559 2.3:-54445702 None:intergenic
GGCTTGCTTTAAGGATCTTG+GGG 0.492460 2.3:-54445868 None:intergenic
TTCTTTAAGTTTCGAAAAGA+GGG 0.495393 2.3:+54446390 MS.gene52426:CDS
CCATAATATATTGTTAAACA+TGG 0.502176 2.3:-54445489 None:intergenic
TTAAAAGAATGCTTTGCGTA+AGG 0.521144 2.3:+54446053 MS.gene52426:CDS
TGGAGAAATGGTGGAAAAGA+GGG 0.521602 2.3:-54445541 None:intergenic
TCGAAAAGAGGGTCCTTCCA+AGG 0.522254 2.3:+54446401 MS.gene52426:CDS
ATTATATTGCTGATTGCCAA+TGG 0.523498 2.3:+54446013 MS.gene52426:CDS
CGAGCGTCTCCAAAGAAAGA+TGG 0.526080 2.3:-54445977 None:intergenic
AAACTGCTGGTCCTTTGGCA+AGG 0.527369 2.3:-54446366 None:intergenic
GTGGAGAAATGGTGGAAAAG+AGG 0.534389 2.3:-54445542 None:intergenic
AAGAGGGTTAGGGTTTAGAA+GGG 0.536351 2.3:-54445525 None:intergenic
ACTACGTCTTACCATTTCAA+AGG 0.541064 2.3:+54445736 MS.gene52426:CDS
GATTCACTTGCCCTTGCCAA+AGG 0.547449 2.3:+54446355 MS.gene52426:CDS
GAGGTAGGAGACTGCAAAAG+AGG 0.555968 2.3:-54445582 None:intergenic
AATGGTGGAAAAGAGGGTTA+GGG 0.557608 2.3:-54445535 None:intergenic
AGTCGATGCCTTTAAGAAGT+GGG 0.559365 2.3:+54446219 MS.gene52426:CDS
AACTGCTGGTCCTTTGGCAA+GGG 0.562420 2.3:-54446365 None:intergenic
TATTGCAATACAGAGGCCCT+TGG 0.565124 2.3:-54446418 None:intergenic
GGTTGAATCTGAAGTGTTGG+TGG 0.573845 2.3:-54445561 None:intergenic
GGCTAGCAATGCTACACCAA+AGG 0.575700 2.3:-54446161 None:intergenic
CGAAAAGAGGGTCCTTCCAA+GGG 0.576545 2.3:+54446402 MS.gene52426:CDS
AAGTCGATGCCTTTAAGAAG+TGG 0.577016 2.3:+54446218 MS.gene52426:CDS
TAGATTCTTGCAATCAGACA+AGG 0.583953 2.3:+54445928 MS.gene52426:CDS
AAGTGTTGGTGGAGAAATGG+TGG 0.591888 2.3:-54445550 None:intergenic
GCAATACAGAGGCCCTTGGA+AGG 0.596897 2.3:-54446414 None:intergenic
ATGCCTTTAAGAAGTGGGGT+TGG 0.598873 2.3:+54446224 MS.gene52426:CDS
GCCAAAGTTGTTGATGAGGT+AGG 0.602091 2.3:-54445597 None:intergenic
GTCGATGCCTTTAAGAAGTG+GGG 0.602513 2.3:+54446220 MS.gene52426:CDS
ACATGACATGCTGAAATTGG+TGG 0.610610 2.3:+54446099 MS.gene52426:CDS
AAGTTTGGAAGCAGATTGTG+GGG 0.614108 2.3:-54445624 None:intergenic
TGACATGCTGAAATTGGTGG+AGG 0.631062 2.3:+54446102 MS.gene52426:CDS
AAAAGCCAAAGTTGTTGATG+AGG 0.632517 2.3:-54445601 None:intergenic
TTTCTTTGGAGACGCTCGTG+TGG 0.632941 2.3:+54445982 MS.gene52426:CDS
ACTCAATCTTGCTTACACCA+TGG 0.635583 2.3:+54446576 MS.gene52426:CDS
AGAGGTTGAATCTGAAGTGT+TGG 0.638939 2.3:-54445564 None:intergenic
AATTTCAGCATGTCATGTGT+CGG 0.639746 2.3:-54446094 None:intergenic
GGGTTGCAGGAAAGTAGCCA+TGG 0.641042 2.3:-54445761 None:intergenic
GAAACAAACATTGTAAGTGG+AGG 0.650981 2.3:-54445648 None:intergenic
TTACCATTTCAAAGGAACCA+TGG 0.651356 2.3:+54445744 MS.gene52426:CDS
ATGGATGTTAACATACAATG+AGG 0.655070 2.3:-54446283 None:intergenic
ATTGCTGATTGCCAATGGAG+TGG 0.669284 2.3:+54446018 MS.gene52426:CDS
CAGAAGATATTGCAATACAG+AGG 0.669772 2.3:-54446425 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTGATAATTTTATTATTC+AGG - chr2.3:54445892-54445911 None:intergenic 15.0%
!!! GAGTAAATTAATTTTATCAA+TGG - chr2.3:54446305-54446324 None:intergenic 15.0%
!! GAATCTATAAATCAATTGAT+AGG - chr2.3:54445915-54445934 None:intergenic 20.0%
!! TTATCTATTAAAGTTGTATG+AGG + chr2.3:54446549-54446568 MS.gene52426:CDS 20.0%
!! TTTCTTGATACATGTATAAA+GGG + chr2.3:54446511-54446530 MS.gene52426:CDS 20.0%
!!! TAATTTACTCATGAACTTTT+GGG + chr2.3:54446315-54446334 MS.gene52426:CDS 20.0%
!!! TTAATTTACTCATGAACTTT+TGG + chr2.3:54446314-54446333 MS.gene52426:CDS 20.0%
! AAACTTAAAGAAAAAACTGC+TGG - chr2.3:54446382-54446401 None:intergenic 25.0%
! ATCTGTAAGAAAAACATTGT+GGG + chr2.3:54446189-54446208 MS.gene52426:CDS 25.0%
! GAGAGAAAAAATTGAAACTT+TGG - chr2.3:54445803-54445822 None:intergenic 25.0%
! GTTTCTTGATACATGTATAA+AGG + chr2.3:54446510-54446529 MS.gene52426:CDS 25.0%
! TATCTGTAAGAAAAACATTG+TGG + chr2.3:54446188-54446207 MS.gene52426:CDS 25.0%
!! CATTCTTTTAATGTTTGAGT+CGG - chr2.3:54446044-54446063 None:intergenic 25.0%
!! TGTTTTTCTTACAGATAGTT+TGG - chr2.3:54446185-54446204 None:intergenic 25.0%
!! TTCTTTAAGTTTCGAAAAGA+GGG + chr2.3:54446390-54446409 MS.gene52426:CDS 25.0%
!! TTTCTTTAAGTTTCGAAAAG+AGG + chr2.3:54446389-54446408 MS.gene52426:CDS 25.0%
!!! TACATGTATAAAGGGTATTA+AGG + chr2.3:54446519-54446538 MS.gene52426:CDS 25.0%
!!! TTTCAATTTTTTCTCTCCAA+AGG + chr2.3:54445806-54445825 MS.gene52426:CDS 25.0%
ATGGATGTTAACATACAATG+AGG - chr2.3:54446286-54446305 None:intergenic 30.0%
CTTGAAACAAACATTGTAAG+TGG - chr2.3:54445654-54445673 None:intergenic 30.0%
TCTGTAAGAAAAACATTGTG+GGG + chr2.3:54446190-54446209 MS.gene52426:CDS 30.0%
TTAAAAGAATGCTTTGCGTA+AGG + chr2.3:54446053-54446072 MS.gene52426:CDS 30.0%
! ATTATATTGCTGATTGCCAA+TGG + chr2.3:54446013-54446032 MS.gene52426:CDS 30.0%
! GAAACCATAGTTTCTAAAGA+AGG - chr2.3:54445705-54445724 None:intergenic 30.0%
! TATTATTCAGGCTTGCTTTA+AGG - chr2.3:54445880-54445899 None:intergenic 30.0%
! TTGCAATATCTTCTGAAGAA+AGG + chr2.3:54446433-54446452 MS.gene52426:CDS 30.0%
AAAAGCCAAAGTTGTTGATG+AGG - chr2.3:54445604-54445623 None:intergenic 35.0%
AAAGTTTGGAAGCAGATTGT+GGG - chr2.3:54445628-54445647 None:intergenic 35.0%
AATTTCAGCATGTCATGTGT+CGG - chr2.3:54446097-54446116 None:intergenic 35.0%
ACTACGTCTTACCATTTCAA+AGG + chr2.3:54445736-54445755 MS.gene52426:CDS 35.0%
ACTCCTTCAAAATCAACCTT+TGG + chr2.3:54446145-54446164 MS.gene52426:CDS 35.0%
ATGTTCTACAAGCGTTTAGA+AGG + chr2.3:54446257-54446276 MS.gene52426:CDS 35.0%
ATTCGCAATCCATCTTTCTT+TGG + chr2.3:54445968-54445987 MS.gene52426:CDS 35.0%
ATTGTAAGTGGAGGAAAGTT+TGG - chr2.3:54445642-54445661 None:intergenic 35.0%
CAGAAGATATTGCAATACAG+AGG - chr2.3:54446428-54446447 None:intergenic 35.0%
GAAACAAACATTGTAAGTGG+AGG - chr2.3:54445651-54445670 None:intergenic 35.0%
GAAATTGGTGGAGGAATTAA+AGG + chr2.3:54446111-54446130 MS.gene52426:CDS 35.0%
GTGGAGGAATTAAAGGATTT+GGG + chr2.3:54446118-54446137 MS.gene52426:CDS 35.0%
TAGATTCTTGCAATCAGACA+AGG + chr2.3:54445928-54445947 MS.gene52426:CDS 35.0%
TGAAATGGTAAGACGTAGTT+GGG - chr2.3:54445735-54445754 None:intergenic 35.0%
TTACCATTTCAAAGGAACCA+TGG + chr2.3:54445744-54445763 MS.gene52426:CDS 35.0%
TTGAAATGGTAAGACGTAGT+TGG - chr2.3:54445736-54445755 None:intergenic 35.0%
! CTCACCTTCTTTAGAAACTA+TGG + chr2.3:54445698-54445717 MS.gene52426:CDS 35.0%
! TTTGGCAAAACCCTTTTAGA+AGG - chr2.3:54445785-54445804 None:intergenic 35.0%
!! AACTTTTGGGTCAATCAGTT+GGG + chr2.3:54446328-54446347 MS.gene52426:CDS 35.0%
!! ACACCAAAGGTTGATTTTGA+AGG - chr2.3:54446151-54446170 None:intergenic 35.0%
!! TTGGCAAAACCCTTTTAGAA+GGG - chr2.3:54445784-54445803 None:intergenic 35.0%
AAAGAGGGTTAGGGTTTAGA+AGG - chr2.3:54445529-54445548 None:intergenic 40.0%
AAGAGGGTTAGGGTTTAGAA+GGG - chr2.3:54445528-54445547 None:intergenic 40.0%
AAGTTTGGAAGCAGATTGTG+GGG - chr2.3:54445627-54445646 None:intergenic 40.0%
ACATGACATGCTGAAATTGG+TGG + chr2.3:54446099-54446118 MS.gene52426:CDS 40.0%
ACTCAATCTTGCTTACACCA+TGG + chr2.3:54446576-54446595 MS.gene52426:CDS 40.0%
AGAAAAAACTGCTGGTCCTT+TGG - chr2.3:54446374-54446393 None:intergenic 40.0%
GAAAGTTTGGAAGCAGATTG+TGG - chr2.3:54445629-54445648 None:intergenic 40.0%
GACACATGACATGCTGAAAT+TGG + chr2.3:54446096-54446115 MS.gene52426:CDS 40.0%
GGTGGAGGAATTAAAGGATT+TGG + chr2.3:54446117-54446136 MS.gene52426:CDS 40.0%
GTATCAAGAAACAGCTTCTC+AGG - chr2.3:54446502-54446521 None:intergenic 40.0%
TCCTACCTCATCAACAACTT+TGG + chr2.3:54445596-54445615 MS.gene52426:CDS 40.0%
TTTCCTGCAACCCTTCTAAA+AGG + chr2.3:54445771-54445790 MS.gene52426:CDS 40.0%
! AAATGGTGGAAAAGAGGGTT+AGG - chr2.3:54445539-54445558 None:intergenic 40.0%
! AAGTCGATGCCTTTAAGAAG+TGG + chr2.3:54446218-54446237 MS.gene52426:CDS 40.0%
! AATGGTGGAAAAGAGGGTTA+GGG - chr2.3:54445538-54445557 None:intergenic 40.0%
! AGAGGTTGAATCTGAAGTGT+TGG - chr2.3:54445567-54445586 None:intergenic 40.0%
! AGTCGATGCCTTTAAGAAGT+GGG + chr2.3:54446219-54446238 MS.gene52426:CDS 40.0%
! GAGAACAGAGTCAGGTTTTT+GGG - chr2.3:54445681-54445700 None:intergenic 40.0%
! TAGCCATGGTTCCTTTGAAA+TGG - chr2.3:54445750-54445769 None:intergenic 40.0%
! TGAGAACAGAGTCAGGTTTT+TGG - chr2.3:54445682-54445701 None:intergenic 40.0%
! TGATGTGCATGTTTTGTCCA+TGG - chr2.3:54446596-54446615 None:intergenic 40.0%
! TGGAGAAATGGTGGAAAAGA+GGG - chr2.3:54445544-54445563 None:intergenic 40.0%
! TTCCTGCAACCCTTCTAAAA+GGG + chr2.3:54445772-54445791 MS.gene52426:CDS 40.0%
!! AGGCTTGCTTTAAGGATCTT+GGG - chr2.3:54445872-54445891 None:intergenic 40.0%
!! GAACTTTTGGGTCAATCAGT+TGG + chr2.3:54446327-54446346 MS.gene52426:CDS 40.0%
AAGAAGGTGAGAACAGAGTC+AGG - chr2.3:54445689-54445708 None:intergenic 45.0%
AATGCTTTGCGTAAGGAGTC+AGG + chr2.3:54446060-54446079 MS.gene52426:CDS 45.0%
AGACCAACCCCACTTCTTAA+AGG - chr2.3:54446230-54446249 None:intergenic 45.0%
AGCTTCTCAGGCACTACAAA+TGG - chr2.3:54446490-54446509 None:intergenic 45.0%
TATTGCAATACAGAGGCCCT+TGG - chr2.3:54446421-54446440 None:intergenic 45.0%
TGACATGCTGAAATTGGTGG+AGG + chr2.3:54446102-54446121 MS.gene52426:CDS 45.0%
TTGGGTCAATCAGTTGGGTT+GGG + chr2.3:54446333-54446352 MS.gene52426:CDS 45.0%
TTTGGGTCAATCAGTTGGGT+TGG + chr2.3:54446332-54446351 MS.gene52426:CDS 45.0%
! ATGCCTTTAAGAAGTGGGGT+TGG + chr2.3:54446224-54446243 MS.gene52426:CDS 45.0%
! ATTGCTGATTGCCAATGGAG+TGG + chr2.3:54446018-54446037 MS.gene52426:CDS 45.0%
! GCCAAAGTTGTTGATGAGGT+AGG - chr2.3:54445600-54445619 None:intergenic 45.0%
! GTCGATGCCTTTAAGAAGTG+GGG + chr2.3:54446220-54446239 MS.gene52426:CDS 45.0%
! GTGGAGAAATGGTGGAAAAG+AGG - chr2.3:54445545-54445564 None:intergenic 45.0%
!! AACCCTTTTAGAAGGGTTGC+AGG - chr2.3:54445777-54445796 None:intergenic 45.0%
!! AAGTGTTGGTGGAGAAATGG+TGG - chr2.3:54445553-54445572 None:intergenic 45.0%
!! CAGGCTTGCTTTAAGGATCT+TGG - chr2.3:54445873-54445892 None:intergenic 45.0%
!! CTGAAGTGTTGGTGGAGAAA+TGG - chr2.3:54445556-54445575 None:intergenic 45.0%
!! GGCTTGCTTTAAGGATCTTG+GGG - chr2.3:54445871-54445890 None:intergenic 45.0%
!! GGTTGAATCTGAAGTGTTGG+TGG - chr2.3:54445564-54445583 None:intergenic 45.0%
!! GTCAGAGTTAGAAGCACCTT+TGG - chr2.3:54445825-54445844 None:intergenic 45.0%
AAACTGCTGGTCCTTTGGCA+AGG - chr2.3:54446369-54446388 None:intergenic 50.0%
AACTGCTGGTCCTTTGGCAA+GGG - chr2.3:54446368-54446387 None:intergenic 50.0%
CGAAAAGAGGGTCCTTCCAA+GGG + chr2.3:54446402-54446421 MS.gene52426:CDS 50.0%
CGAGCGTCTCCAAAGAAAGA+TGG - chr2.3:54445980-54445999 None:intergenic 50.0%
GAGGTAGGAGACTGCAAAAG+AGG - chr2.3:54445585-54445604 None:intergenic 50.0%
GATTCACTTGCCCTTGCCAA+AGG + chr2.3:54446355-54446374 MS.gene52426:CDS 50.0%
GGCTAGCAATGCTACACCAA+AGG - chr2.3:54446164-54446183 None:intergenic 50.0%
TCGAAAAGAGGGTCCTTCCA+AGG + chr2.3:54446401-54446420 MS.gene52426:CDS 50.0%
! TTTCTTTGGAGACGCTCGTG+TGG + chr2.3:54445982-54446001 MS.gene52426:CDS 50.0%
GCAATACAGAGGCCCTTGGA+AGG - chr2.3:54446417-54446436 None:intergenic 55.0%
GGGTTGCAGGAAAGTAGCCA+TGG - chr2.3:54445764-54445783 None:intergenic 55.0%
GTTTGAGTCGGCCACTCCAT+TGG - chr2.3:54446032-54446051 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 54445491 54446618 54445491 ID=MS.gene52426
chr2.3 mRNA 54445491 54446618 54445491 ID=MS.gene52426.t1;Parent=MS.gene52426
chr2.3 exon 54445491 54446618 54445491 ID=MS.gene52426.t1.exon1;Parent=MS.gene52426.t1
chr2.3 CDS 54445491 54446618 54445491 ID=cds.MS.gene52426.t1;Parent=MS.gene52426.t1
Gene Sequence

>MS.gene52426

ATGTTTAACAATATATTATGGCGACACAGAACAACCCTTCTAAACCCTAACCCTCTTTTCCACCATTTCTCCACCAACACTTCAGATTCAACCTCTTTTGCAGTCTCCTACCTCATCAACAACTTTGGCTTTTCCCCACAATCTGCTTCCAAACTTTCCTCCACTTACAATGTTTGTTTCAAGAATGCCCAAAAACCTGACTCTGTTCTCACCTTCTTTAGAAACTATGGTTTCTCAGATTCCCAACTACGTCTTACCATTTCAAAGGAACCATGGCTACTTTCCTGCAACCCTTCTAAAAGGGTTTTGCCAAAGTTTCAATTTTTTCTCTCCAAAGGTGCTTCTAACTCTGACATTGTTAACATTGTCACTAAGAACCCCAAGATCCTTAAAGCAAGCCTGAATAATAAAATTATCAAAGCCTATCAATTGATTTATAGATTCTTGCAATCAGACAAGGTCATTATTGATTGTGTTATTCGCAATCCATCTTTCTTTGGAGACGCTCGTGTGGTATCTAACATTATATTGCTGATTGCCAATGGAGTGGCCGACTCAAACATTAAAAGAATGCTTTGCGTAAGGAGTCAGGCATTTCAGACACCGACACATGACATGCTGAAATTGGTGGAGGAATTAAAGGATTTGGGTTTTACTCCTTCAAAATCAACCTTTGGTGTAGCATTGCTAGCCAAACTATCTGTAAGAAAAACATTGTGGGGAGAGAAAGTCGATGCCTTTAAGAAGTGGGGTTGGTCTGATGAAGATGTTCTACAAGCGTTTAGAAGGCAACCTCATTGTATGTTAACATCCATTGATAAAATTAATTTACTCATGAACTTTTGGGTCAATCAGTTGGGTTGGGATTCACTTGCCCTTGCCAAAGGACCAGCAGTTTTTTCTTTAAGTTTCGAAAAGAGGGTCCTTCCAAGGGCCTCTGTATTGCAATATCTTCTGAAGAAAGGTTTGCGAAACAAGAATGCAAGCTTAACTTGTCCATTTGTAGTGCCTGAGAAGCTGTTTCTTGATACATGTATAAAGGGTATTAAGGAGTCTTCTTATCTATTAAAGTTGTATGAGGAAAAACTCAATCTTGCTTACACCATGGACAAAACATGCACATCATGA
Protein sequence

>MS.gene52426.t1

MFNNILWRHRTTLLNPNPLFHHFSTNTSDSTSFAVSYLINNFGFSPQSASKLSSTYNVCFKNAQKPDSVLTFFRNYGFSDSQLRLTISKEPWLLSCNPSKRVLPKFQFFLSKGASNSDIVNIVTKNPKILKASLNNKIIKAYQLIYRFLQSDKVIIDCVIRNPSFFGDARVVSNIILLIANGVADSNIKRMLCVRSQAFQTPTHDMLKLVEELKDLGFTPSKSTFGVALLAKLSVRKTLWGEKVDAFKKWGWSDEDVLQAFRRQPHCMLTSIDKINLLMNFWVNQLGWDSLALAKGPAVFSLSFEKRVLPRASVLQYLLKKGLRNKNASLTCPFVVPEKLFLDTCIKGIKESSYLLKLYEEKLNLAYTMDKTCTS