Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80548.t1 | XP_027339654.1 | 68.6 | 172 | 51 | 2 | 11 | 182 | 441 | 609 | 5.30E-52 | 214.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80548.t1 | F4JT76 | 51.2 | 172 | 81 | 2 | 11 | 182 | 467 | 635 | 3.5e-36 | 152.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80548.t1 | A0A3Q7XYE2 | 69.8 | 172 | 49 | 2 | 11 | 182 | 443 | 611 | 1.1e-51 | 212.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene80548 | 0.802703 | 4.95E-49 | -1.69E-46 |
| MS.gene049254 | MS.gene80548 | 0.85451 | 1.17E-61 | -1.69E-46 |
| MS.gene049272 | MS.gene80548 | 0.836764 | 7.73E-57 | -1.69E-46 |
| MS.gene049343 | MS.gene80548 | 0.823906 | 1.08E-53 | -1.69E-46 |
| MS.gene049404 | MS.gene80548 | 0.817657 | 2.94E-52 | -1.69E-46 |
| MS.gene049824 | MS.gene80548 | 0.802654 | 5.06E-49 | -1.69E-46 |
| MS.gene049825 | MS.gene80548 | 0.829665 | 4.53E-55 | -1.69E-46 |
| MS.gene049850 | MS.gene80548 | 0.823645 | 1.24E-53 | -1.69E-46 |
| MS.gene049873 | MS.gene80548 | 0.827831 | 1.26E-54 | -1.69E-46 |
| MS.gene049977 | MS.gene80548 | 0.802216 | 6.23E-49 | -1.69E-46 |
| MS.gene050026 | MS.gene80548 | 0.818719 | 1.69E-52 | -1.69E-46 |
| MS.gene050029 | MS.gene80548 | 0.805376 | 1.38E-49 | -1.69E-46 |
| MS.gene050125 | MS.gene80548 | 0.811167 | 8.02E-51 | -1.69E-46 |
| MS.gene050156 | MS.gene80548 | 0.807492 | 4.92E-50 | -1.69E-46 |
| MS.gene050201 | MS.gene80548 | 0.816649 | 4.96E-52 | -1.69E-46 |
| MS.gene050237 | MS.gene80548 | 0.804006 | 2.66E-49 | -1.69E-46 |
| MS.gene050273 | MS.gene80548 | 0.813015 | 3.17E-51 | -1.69E-46 |
| MS.gene050355 | MS.gene80548 | 0.82955 | 4.83E-55 | -1.69E-46 |
| MS.gene050559 | MS.gene80548 | 0.834309 | 3.23E-56 | -1.69E-46 |
| MS.gene050561 | MS.gene80548 | 0.826009 | 3.43E-54 | -1.69E-46 |
| MS.gene050562 | MS.gene80548 | 0.820076 | 8.30E-53 | -1.69E-46 |
| MS.gene050799 | MS.gene80548 | 0.807799 | 4.24E-50 | -1.69E-46 |
| MS.gene051198 | MS.gene80548 | 0.800453 | 1.43E-48 | -1.69E-46 |
| MS.gene051279 | MS.gene80548 | 0.830279 | 3.21E-55 | -1.69E-46 |
| MS.gene051594 | MS.gene80548 | 0.820248 | 7.58E-53 | -1.69E-46 |
| MS.gene051719 | MS.gene80548 | 0.811789 | 5.87E-51 | -1.69E-46 |
| MS.gene051720 | MS.gene80548 | 0.833375 | 5.53E-56 | -1.69E-46 |
| MS.gene051957 | MS.gene80548 | 0.805917 | 1.06E-49 | -1.69E-46 |
| MS.gene052037 | MS.gene80548 | 0.812174 | 4.84E-51 | -1.69E-46 |
| MS.gene052108 | MS.gene80548 | 0.809821 | 1.57E-50 | -1.69E-46 |
| MS.gene052358 | MS.gene80548 | -0.800233 | 1.59E-48 | -1.69E-46 |
| MS.gene052519 | MS.gene80548 | 0.868599 | 5.79E-66 | -1.69E-46 |
| MS.gene052582 | MS.gene80548 | 0.838397 | 2.95E-57 | -1.69E-46 |
| MS.gene052584 | MS.gene80548 | 0.843232 | 1.59E-58 | -1.69E-46 |
| MS.gene052586 | MS.gene80548 | 0.803393 | 3.56E-49 | -1.69E-46 |
| MS.gene052773 | MS.gene80548 | 0.813574 | 2.39E-51 | -1.69E-46 |
| MS.gene052829 | MS.gene80548 | 0.801363 | 9.33E-49 | -1.69E-46 |
| MS.gene052863 | MS.gene80548 | 0.819965 | 8.80E-53 | -1.69E-46 |
| MS.gene052867 | MS.gene80548 | 0.803339 | 3.65E-49 | -1.69E-46 |
| MS.gene052896 | MS.gene80548 | 0.810085 | 1.37E-50 | -1.69E-46 |
| MS.gene053006 | MS.gene80548 | 0.800361 | 1.49E-48 | -1.69E-46 |
| MS.gene053145 | MS.gene80548 | 0.811664 | 6.25E-51 | -1.69E-46 |
| MS.gene053166 | MS.gene80548 | 0.819394 | 1.19E-52 | -1.69E-46 |
| MS.gene053221 | MS.gene80548 | 0.805637 | 1.21E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene80548 | 0.832431 | 9.49E-56 | -1.69E-46 |
| MS.gene053599 | MS.gene80548 | 0.802837 | 4.64E-49 | -1.69E-46 |
| MS.gene05414 | MS.gene80548 | 0.812089 | 5.05E-51 | -1.69E-46 |
| MS.gene05415 | MS.gene80548 | 0.850766 | 1.37E-60 | -1.69E-46 |
| MS.gene054236 | MS.gene80548 | 0.83358 | 4.91E-56 | -1.69E-46 |
| MS.gene05423 | MS.gene80548 | 0.853545 | 2.23E-61 | -1.69E-46 |
| MS.gene054291 | MS.gene80548 | -0.804651 | 1.95E-49 | -1.69E-46 |
| MS.gene054559 | MS.gene80548 | 0.807237 | 5.58E-50 | -1.69E-46 |
| MS.gene05458 | MS.gene80548 | 0.819801 | 9.60E-53 | -1.69E-46 |
| MS.gene054651 | MS.gene80548 | 0.841494 | 4.59E-58 | -1.69E-46 |
| MS.gene054775 | MS.gene80548 | 0.80512 | 1.56E-49 | -1.69E-46 |
| MS.gene054991 | MS.gene80548 | 0.802976 | 4.34E-49 | -1.69E-46 |
| MS.gene055166 | MS.gene80548 | 0.80371 | 3.06E-49 | -1.69E-46 |
| MS.gene055227 | MS.gene80548 | 0.815938 | 7.15E-52 | -1.69E-46 |
| MS.gene055228 | MS.gene80548 | 0.836424 | 9.43E-57 | -1.69E-46 |
| MS.gene055466 | MS.gene80548 | 0.806671 | 7.35E-50 | -1.69E-46 |
| MS.gene055586 | MS.gene80548 | 0.81125 | 7.69E-51 | -1.69E-46 |
| MS.gene055818 | MS.gene80548 | 0.834808 | 2.42E-56 | -1.69E-46 |
| MS.gene056050 | MS.gene80548 | 0.827373 | 1.62E-54 | -1.69E-46 |
| MS.gene056252 | MS.gene80548 | 0.80649 | 8.02E-50 | -1.69E-46 |
| MS.gene056366 | MS.gene80548 | 0.803897 | 2.80E-49 | -1.69E-46 |
| MS.gene056506 | MS.gene80548 | 0.807099 | 5.96E-50 | -1.69E-46 |
| MS.gene056776 | MS.gene80548 | 0.803498 | 3.39E-49 | -1.69E-46 |
| MS.gene05686 | MS.gene80548 | 0.820473 | 6.73E-53 | -1.69E-46 |
| MS.gene057021 | MS.gene80548 | 0.803941 | 2.74E-49 | -1.69E-46 |
| MS.gene057026 | MS.gene80548 | 0.806906 | 6.55E-50 | -1.69E-46 |
| MS.gene057060 | MS.gene80548 | 0.835432 | 1.68E-56 | -1.69E-46 |
| MS.gene057208 | MS.gene80548 | 0.823427 | 1.39E-53 | -1.69E-46 |
| MS.gene057314 | MS.gene80548 | 0.82031 | 7.34E-53 | -1.69E-46 |
| MS.gene057444 | MS.gene80548 | 0.816146 | 6.43E-52 | -1.69E-46 |
| MS.gene057915 | MS.gene80548 | 0.803221 | 3.87E-49 | -1.69E-46 |
| MS.gene058009 | MS.gene80548 | 0.812947 | 3.28E-51 | -1.69E-46 |
| MS.gene058037 | MS.gene80548 | 0.852611 | 4.12E-61 | -1.69E-46 |
| MS.gene058625 | MS.gene80548 | 0.865605 | 5.23E-65 | -1.69E-46 |
| MS.gene058979 | MS.gene80548 | 0.836582 | 8.60E-57 | -1.69E-46 |
| MS.gene059015 | MS.gene80548 | 0.810642 | 1.04E-50 | -1.69E-46 |
| MS.gene059272 | MS.gene80548 | 0.832459 | 9.34E-56 | -1.69E-46 |
| MS.gene05954 | MS.gene80548 | 0.851979 | 6.23E-61 | -1.69E-46 |
| MS.gene059584 | MS.gene80548 | 0.809118 | 2.22E-50 | -1.69E-46 |
| MS.gene059625 | MS.gene80548 | 0.824998 | 5.96E-54 | -1.69E-46 |
| MS.gene059842 | MS.gene80548 | 0.803486 | 3.41E-49 | -1.69E-46 |
| MS.gene060322 | MS.gene80548 | 0.824201 | 9.18E-54 | -1.69E-46 |
| MS.gene060521 | MS.gene80548 | 0.825695 | 4.07E-54 | -1.69E-46 |
| MS.gene060634 | MS.gene80548 | -0.828863 | 7.10E-55 | -1.69E-46 |
| MS.gene061040 | MS.gene80548 | -0.802213 | 6.24E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80548.t1 | MTR_2g047908 | 68.023 | 172 | 52 | 2 | 11 | 182 | 447 | 615 | 5.79e-60 | 201 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80548.t1 | AT4G19490 | 51.163 | 172 | 81 | 2 | 11 | 182 | 467 | 635 | 5.61e-37 | 135 |
| MS.gene80548.t1 | AT4G19490 | 51.163 | 172 | 81 | 2 | 11 | 182 | 467 | 635 | 5.61e-37 | 135 |
Find 32 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATTTCTTTGCGGTGAATA+TGG | 0.269801 | 2.1:-43581106 | None:intergenic |
| GAGGACTTCATTGCAGTTAT+AGG | 0.306015 | 2.1:+43582698 | MS.gene80548:CDS |
| TTTGTGATTGCAGGCACATT+TGG | 0.361631 | 2.1:+43580931 | MS.gene80548:intron |
| TCTTAGGGAGACTATGTATT+GGG | 0.385098 | 2.1:+43580774 | None:intergenic |
| CTAACAGATCGGTGGAAGAT+TGG | 0.404390 | 2.1:+43582809 | MS.gene80548:intron |
| TAACAGATCGGTGGAAGATT+GGG | 0.429357 | 2.1:+43582810 | MS.gene80548:intron |
| ACCATGAACCTCGCTTTCTT+CGG | 0.436864 | 2.1:-43581071 | None:intergenic |
| CCTATGGCATCATTTCTTTG+CGG | 0.468501 | 2.1:-43581115 | None:intergenic |
| TCCGAAGAAAGCGAGGTTCA+TGG | 0.478169 | 2.1:+43581070 | MS.gene80548:CDS |
| TTCTTAGGGAGACTATGTAT+TGG | 0.478379 | 2.1:+43580773 | None:intergenic |
| GTGATACTGCTCACAGAAGA+TGG | 0.485315 | 2.1:+43582588 | MS.gene80548:CDS |
| GTTGCTGCAGCAATTGCTTG+TGG | 0.512434 | 2.1:+43581028 | MS.gene80548:CDS |
| TCACCTTGTATATCTACTAA+AGG | 0.518412 | 2.1:-43583283 | None:intergenic |
| ATTGCAGGCACATTTGGTGC+GGG | 0.520540 | 2.1:+43580937 | MS.gene80548:intron |
| AGCATATGTATTCTGTGTCA+AGG | 0.527620 | 2.1:+43580812 | MS.gene80548:CDS |
| GAAGATGGGCAAAGCTTCTG+AGG | 0.536203 | 2.1:+43582603 | MS.gene80548:CDS |
| TCCCTGAAAAGAGAGACCTA+TGG | 0.541882 | 2.1:-43581131 | None:intergenic |
| GTTGCTCAAAATCCCCTCAA+TGG | 0.551742 | 2.1:-43580978 | None:intergenic |
| AGATTGGGATACAGCATCGA+TGG | 0.561671 | 2.1:+43582825 | MS.gene80548:CDS |
| AGGCCTTTAGTAGATATACA+AGG | 0.564998 | 2.1:+43583280 | MS.gene80548:intron |
| GCATATGTATTCTGTGTCAA+GGG | 0.580748 | 2.1:+43580813 | MS.gene80548:CDS |
| TGATACTGCTCACAGAAGAT+GGG | 0.598497 | 2.1:+43582589 | MS.gene80548:CDS |
| CCGCAAAGAAATGATGCCAT+AGG | 0.600791 | 2.1:+43581115 | MS.gene80548:CDS |
| GATTGGGATACAGCATCGAT+GGG | 0.628768 | 2.1:+43582826 | MS.gene80548:CDS |
| GATTGCAGGCACATTTGGTG+CGG | 0.637237 | 2.1:+43580936 | MS.gene80548:intron |
| GCAAAGCTTCTGAGGGATCG+TGG | 0.638563 | 2.1:+43582611 | MS.gene80548:CDS |
| AAGATGGGCAAAGCTTCTGA+GGG | 0.648096 | 2.1:+43582604 | MS.gene80548:CDS |
| AGAAACATCCGAAGAAAGCG+AGG | 0.659844 | 2.1:+43581063 | MS.gene80548:CDS |
| AGAAATTGCAGAGATTGCAG+AGG | 0.663419 | 2.1:-43582656 | None:intergenic |
| CATTCAAACTAACAGATCGG+TGG | 0.673332 | 2.1:+43582801 | MS.gene80548:intron |
| GACAGTGCAGTCATACACCA+AGG | 0.719412 | 2.1:+43582848 | MS.gene80548:CDS |
| ATACATTGACAGCATCAACG+AGG | 0.785944 | 2.1:+43582679 | MS.gene80548:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTATTATGTAGTTAATT+AGG | + | chr2.1:43581616-43581635 | MS.gene80548:intron | 10.0% |
| !! | ACAACTAAATATAAAAGTAA+TGG | - | chr2.1:43582480-43582499 | None:intergenic | 15.0% |
| !! | ATAATTCTATTGTAATTTGA+CGG | + | chr2.1:43581331-43581350 | MS.gene80548:intron | 15.0% |
| !! | ATGTTAATTTCATTTGTATT+TGG | + | chr2.1:43582982-43583001 | MS.gene80548:intron | 15.0% |
| !! | TCTTATTATTTAATCCTAAT+GGG | - | chr2.1:43581666-43581685 | None:intergenic | 15.0% |
| !!! | AAAAAATTCAGGTTAAATAT+TGG | + | chr2.1:43581190-43581209 | MS.gene80548:intron | 15.0% |
| !!! | ATTCAACAAATATTTTTTTG+AGG | - | chr2.1:43582886-43582905 | None:intergenic | 15.0% |
| !!! | TCTCTTTATTTGTATATAAA+GGG | + | chr2.1:43581714-43581733 | MS.gene80548:intron | 15.0% |
| !!! | TTCTCTTTATTTGTATATAA+AGG | + | chr2.1:43581713-43581732 | MS.gene80548:intron | 15.0% |
| !! | AAATAATAAGAGGCTAATTA+GGG | + | chr2.1:43581675-43581694 | MS.gene80548:intron | 20.0% |
| !! | AACCTACTTTATAAAATGAT+AGG | - | chr2.1:43581978-43581997 | None:intergenic | 20.0% |
| !! | AATTATACAAGTATATCTAG+TGG | - | chr2.1:43582406-43582425 | None:intergenic | 20.0% |
| !! | AATTTAGTATTAGAAAGCTA+AGG | - | chr2.1:43583238-43583257 | None:intergenic | 20.0% |
| !! | ACTAGATATACTTGTATAAT+TGG | + | chr2.1:43582405-43582424 | MS.gene80548:intron | 20.0% |
| !! | AGATGGTAATTACAAAAATA+GGG | - | chr2.1:43581870-43581889 | None:intergenic | 20.0% |
| !! | ATACTTGTATAATTGGTAAA+TGG | + | chr2.1:43582412-43582431 | MS.gene80548:intron | 20.0% |
| !! | CATTAGGATTAAATAATAAG+AGG | + | chr2.1:43581665-43581684 | MS.gene80548:intron | 20.0% |
| !! | CCTAAATATAATATGGATAA+CGG | + | chr2.1:43582357-43582376 | MS.gene80548:intron | 20.0% |
| !! | CTCTTATTATTTAATCCTAA+TGG | - | chr2.1:43581667-43581686 | None:intergenic | 20.0% |
| !! | TAAATAATAAGAGGCTAATT+AGG | + | chr2.1:43581674-43581693 | MS.gene80548:intron | 20.0% |
| !! | TTGATTCTTTCTTTATTGAA+CGG | + | chr2.1:43581406-43581425 | MS.gene80548:intron | 20.0% |
| !!! | AAAACAATGTTGTTTATTGA+AGG | + | chr2.1:43583048-43583067 | MS.gene80548:intron | 20.0% |
| !!! | CTCTTTATTTGTATATAAAG+GGG | + | chr2.1:43581715-43581734 | MS.gene80548:intron | 20.0% |
| !!! | GTATGTACATATTTTCATTT+TGG | + | chr2.1:43582725-43582744 | MS.gene80548:intron | 20.0% |
| ! | AGTAGGTTTAAAAAACGAAA+TGG | + | chr2.1:43581990-43582009 | MS.gene80548:intron | 25.0% |
| ! | CAGATGGTAATTACAAAAAT+AGG | - | chr2.1:43581871-43581890 | None:intergenic | 25.0% |
| ! | CCGTTATCCATATTATATTT+AGG | - | chr2.1:43582360-43582379 | None:intergenic | 25.0% |
| ! | CTAACAAGTCAAAAAAATTC+AGG | + | chr2.1:43581179-43581198 | MS.gene80548:CDS | 25.0% |
| ! | GATAAGATAAAACATTTGAG+AGG | - | chr2.1:43582225-43582244 | None:intergenic | 25.0% |
| ! | GTAGGTTTAAAAAACGAAAT+GGG | + | chr2.1:43581991-43582010 | MS.gene80548:intron | 25.0% |
| ! | GTATGCTATCATTAACTAAT+TGG | - | chr2.1:43583205-43583224 | None:intergenic | 25.0% |
| ! | TATAGAATATAGATGGCTTA+CGG | - | chr2.1:43582094-43582113 | None:intergenic | 25.0% |
| ! | TGAATGAAAATAGTAGTAGA+AGG | - | chr2.1:43581834-43581853 | None:intergenic | 25.0% |
| ! | TGAGGAAATATTAATAACCT+TGG | - | chr2.1:43582868-43582887 | None:intergenic | 25.0% |
| ! | TTGAGAACATCAAACAAATA+GGG | - | chr2.1:43582505-43582524 | None:intergenic | 25.0% |
| ! | TTTGAGAACATCAAACAAAT+AGG | - | chr2.1:43582506-43582525 | None:intergenic | 25.0% |
| ! | TTTGATGTTCTCAAAAAATC+TGG | + | chr2.1:43582511-43582530 | MS.gene80548:intron | 25.0% |
| ! | TTTGTATATAAAGGGGAATT+AGG | + | chr2.1:43581722-43581741 | MS.gene80548:intron | 25.0% |
| !! | ATGTAGTGTATTTCTTTTAC+TGG | + | chr2.1:43582298-43582317 | MS.gene80548:intron | 25.0% |
| !! | GTCCTATCATTTTATAAAGT+AGG | + | chr2.1:43581973-43581992 | MS.gene80548:intron | 25.0% |
| !!! | AATTCTAATTCTGCTTTTTC+AGG | + | chr2.1:43583260-43583279 | MS.gene80548:intron | 25.0% |
| !!! | GAATTTTTTTGACTTGTTAG+AGG | - | chr2.1:43581179-43581198 | None:intergenic | 25.0% |
| !!! | GATTGAACTTTTGAGTTAAT+TGG | - | chr2.1:43581522-43581541 | None:intergenic | 25.0% |
| !!! | GTTTTTAGTATAAAACTGAC+AGG | - | chr2.1:43581942-43581961 | None:intergenic | 25.0% |
| !!! | TTTTTCTTTTTTGTGATTGC+AGG | + | chr2.1:43580922-43580941 | MS.gene80548:intron | 25.0% |
| AAACTAACGTTGAATCAGTA+TGG | + | chr2.1:43582192-43582211 | MS.gene80548:intron | 30.0% | |
| AACTGTCAAACTAATAAACG+TGG | - | chr2.1:43582958-43582977 | None:intergenic | 30.0% | |
| AAGAATGAAGATGAAACAGA+TGG | - | chr2.1:43581887-43581906 | None:intergenic | 30.0% | |
| AATAAACGTGGAGGAAAATA+TGG | - | chr2.1:43582946-43582965 | None:intergenic | 30.0% | |
| ACAACTAAACTTCAGTAACA+TGG | - | chr2.1:43580845-43580864 | None:intergenic | 30.0% | |
| ACCAATATGGATTCCATAAA+GGG | - | chr2.1:43581463-43581482 | None:intergenic | 30.0% | |
| ACTCAAAAGTTCAATCTGAT+AGG | + | chr2.1:43581526-43581545 | MS.gene80548:intron | 30.0% | |
| AGTTAATGATAGCATACACA+AGG | + | chr2.1:43583208-43583227 | MS.gene80548:intron | 30.0% | |
| ATCAAACAGTTCAAACTTAG+AGG | - | chr2.1:43581391-43581410 | None:intergenic | 30.0% | |
| CCATCTATATTCTATAGCTT+GGG | + | chr2.1:43582098-43582117 | MS.gene80548:intron | 30.0% | |
| CTGCTCTCCTAAATATAATA+TGG | + | chr2.1:43582350-43582369 | MS.gene80548:intron | 30.0% | |
| GAATGAAAACTTTCCCTTTA+TGG | + | chr2.1:43581447-43581466 | MS.gene80548:intron | 30.0% | |
| TACCAATATGGATTCCATAA+AGG | - | chr2.1:43581464-43581483 | None:intergenic | 30.0% | |
| TATCATTAACTAATTGGCCA+GGG | - | chr2.1:43583199-43583218 | None:intergenic | 30.0% | |
| TCAAGTAGATTATTAGTGAG+TGG | + | chr2.1:43581640-43581659 | MS.gene80548:intron | 30.0% | |
| TCACCTTGTATATCTACTAA+AGG | - | chr2.1:43583286-43583305 | None:intergenic | 30.0% | |
| TGTCATTGTGGTTCAATTAT+AGG | + | chr2.1:43581913-43581932 | MS.gene80548:intron | 30.0% | |
| TTGGTCAACTGACATATATT+CGG | + | chr2.1:43583001-43583020 | MS.gene80548:intron | 30.0% | |
| TTTATGGAATCCATATTGGT+AGG | + | chr2.1:43581463-43581482 | MS.gene80548:intron | 30.0% | |
| ! | ACACACAAAAGGTTTTTGTT+AGG | + | chr2.1:43581568-43581587 | MS.gene80548:intron | 30.0% |
| !! | TACTGATTCAACGTTAGTTT+AGG | - | chr2.1:43582192-43582211 | None:intergenic | 30.0% |
| !!! | TAGTCATTTTTCCGTTTTAG+AGG | + | chr2.1:43582264-43582283 | MS.gene80548:intron | 30.0% |
| AAATGGGACAAAATTGTGAG+AGG | + | chr2.1:43582007-43582026 | MS.gene80548:intron | 35.0% | |
| AAGTTCAATCTGATAGGTGA+AGG | + | chr2.1:43581532-43581551 | MS.gene80548:intron | 35.0% | |
| ACGGAAAAATGACTACTGAA+TGG | - | chr2.1:43582259-43582278 | None:intergenic | 35.0% | |
| AGCATATGTATTCTGTGTCA+AGG | + | chr2.1:43580812-43580831 | MS.gene80548:CDS | 35.0% | |
| AGGCCTTTAGTAGATATACA+AGG | + | chr2.1:43583280-43583299 | MS.gene80548:intron | 35.0% | |
| ATCATTAACTAATTGGCCAG+GGG | - | chr2.1:43583198-43583217 | None:intergenic | 35.0% | |
| CCACATTCAAACTAACAGAT+CGG | + | chr2.1:43582798-43582817 | MS.gene80548:intron | 35.0% | |
| CCCAAGCTATAGAATATAGA+TGG | - | chr2.1:43582101-43582120 | None:intergenic | 35.0% | |
| CGGAAGTTAAGAACATGATT+TGG | + | chr2.1:43582377-43582396 | MS.gene80548:intron | 35.0% | |
| CTATCATTAACTAATTGGCC+AGG | - | chr2.1:43583200-43583219 | None:intergenic | 35.0% | |
| CTGTAAAAAAAGCCATTGAG+GGG | + | chr2.1:43580966-43580985 | MS.gene80548:CDS | 35.0% | |
| CTTAAAACACCCTCTCATAT+TGG | - | chr2.1:43581596-43581615 | None:intergenic | 35.0% | |
| GAAAAGAGTTCCTACCAATA+TGG | - | chr2.1:43581476-43581495 | None:intergenic | 35.0% | |
| GCAATACATCATCTCTGTTT+GGG | - | chr2.1:43582538-43582557 | None:intergenic | 35.0% | |
| GCATATGTATTCTGTGTCAA+GGG | + | chr2.1:43580813-43580832 | MS.gene80548:CDS | 35.0% | |
| GCCATCTATATTCTATAGCT+TGG | + | chr2.1:43582097-43582116 | MS.gene80548:intron | 35.0% | |
| GCTGTAAAAAAAGCCATTGA+GGG | + | chr2.1:43580965-43580984 | MS.gene80548:CDS | 35.0% | |
| GTTAGCAAATACAGTAGGTT+AGG | + | chr2.1:43583074-43583093 | MS.gene80548:intron | 35.0% | |
| TATACTGCATTAGCAAGTCT+GGG | - | chr2.1:43581278-43581297 | None:intergenic | 35.0% | |
| TCATTTCTTTGCGGTGAATA+TGG | - | chr2.1:43581109-43581128 | None:intergenic | 35.0% | |
| TCCCTTTATGGAATCCATAT+TGG | + | chr2.1:43581459-43581478 | MS.gene80548:intron | 35.0% | |
| TGAATGTGGGAATTCAATCA+GGG | - | chr2.1:43582787-43582806 | None:intergenic | 35.0% | |
| TGCAATACATCATCTCTGTT+TGG | - | chr2.1:43582539-43582558 | None:intergenic | 35.0% | |
| TGCTGTAAAAAAAGCCATTG+AGG | + | chr2.1:43580964-43580983 | MS.gene80548:CDS | 35.0% | |
| TGGTCAACTGACATATATTC+GGG | + | chr2.1:43583002-43583021 | MS.gene80548:intron | 35.0% | |
| TGTCAAACTAATAAACGTGG+AGG | - | chr2.1:43582955-43582974 | None:intergenic | 35.0% | |
| TGTTAGGATCCAATATGAGA+GGG | + | chr2.1:43581584-43581603 | MS.gene80548:intron | 35.0% | |
| TTGAATGTGGGAATTCAATC+AGG | - | chr2.1:43582788-43582807 | None:intergenic | 35.0% | |
| TTGTTAGGATCCAATATGAG+AGG | + | chr2.1:43581583-43581602 | MS.gene80548:intron | 35.0% | |
| ! | AAAATCCACGTTTTTCTGTC+AGG | - | chr2.1:43583144-43583163 | None:intergenic | 35.0% |
| ! | AAATCCTAGAGCCTCTAAAA+CGG | - | chr2.1:43582278-43582297 | None:intergenic | 35.0% |
| ! | AACCTACTGTATTTGCTAAC+TGG | - | chr2.1:43583074-43583093 | None:intergenic | 35.0% |
| ! | ATTCTTTCGTTGTGTCATTG+TGG | + | chr2.1:43581901-43581920 | MS.gene80548:intron | 35.0% |
| ! | CGATCTGTTAGTTTGAATGT+GGG | - | chr2.1:43582800-43582819 | None:intergenic | 35.0% |
| ! | TTAGTTGTCCTGTTTTCCAA+TGG | + | chr2.1:43580857-43580876 | MS.gene80548:intron | 35.0% |
| ! | TTCAACGTTAGTTTAGGTGA+TGG | - | chr2.1:43582186-43582205 | None:intergenic | 35.0% |
| ACAGTTCAAACTTAGAGGAG+AGG | - | chr2.1:43581386-43581405 | None:intergenic | 40.0% | |
| AGAAATTGCAGAGATTGCAG+AGG | - | chr2.1:43582659-43582678 | None:intergenic | 40.0% | |
| ATACATTGACAGCATCAACG+AGG | + | chr2.1:43582679-43582698 | MS.gene80548:CDS | 40.0% | |
| CATTCAAACTAACAGATCGG+TGG | + | chr2.1:43582801-43582820 | MS.gene80548:intron | 40.0% | |
| CCATGCAACGGAAAAACAAT+CGG | - | chr2.1:43583110-43583129 | None:intergenic | 40.0% | |
| CCTATGGCATCATTTCTTTG+CGG | - | chr2.1:43581118-43581137 | None:intergenic | 40.0% | |
| CTATACTGCATTAGCAAGTC+TGG | - | chr2.1:43581279-43581298 | None:intergenic | 40.0% | |
| GAGGACTTCATTGCAGTTAT+AGG | + | chr2.1:43582698-43582717 | MS.gene80548:CDS | 40.0% | |
| GCTTGGGTGTCTAATATATC+TGG | + | chr2.1:43582114-43582133 | MS.gene80548:intron | 40.0% | |
| GTCTCTTCTTATCCATGCAA+CGG | - | chr2.1:43583122-43583141 | None:intergenic | 40.0% | |
| TAACAGATCGGTGGAAGATT+GGG | + | chr2.1:43582810-43582829 | MS.gene80548:intron | 40.0% | |
| TCATTAACTAATTGGCCAGG+GGG | - | chr2.1:43583197-43583216 | None:intergenic | 40.0% | |
| TGATACTGCTCACAGAAGAT+GGG | + | chr2.1:43582589-43582608 | MS.gene80548:CDS | 40.0% | |
| TTATTAGTGAGTGGCCCATT+AGG | + | chr2.1:43581649-43581668 | MS.gene80548:intron | 40.0% | |
| TTTGTGATTGCAGGCACATT+TGG | + | chr2.1:43580931-43580950 | MS.gene80548:intron | 40.0% | |
| ! | CACACAAAGGTACACACAAA+AGG | + | chr2.1:43581557-43581576 | MS.gene80548:intron | 40.0% |
| ! | CCGATCTGTTAGTTTGAATG+TGG | - | chr2.1:43582801-43582820 | None:intergenic | 40.0% |
| ! | GGGATTTTGAGCAACTATGA+TGG | + | chr2.1:43580986-43581005 | MS.gene80548:CDS | 40.0% |
| ! | TCTGATAAAGTGCCAACCAT+TGG | - | chr2.1:43580876-43580895 | None:intergenic | 40.0% |
| ! | TTGTCCTGTTTTCCAATGGT+TGG | + | chr2.1:43580861-43580880 | MS.gene80548:intron | 40.0% |
| !!! | ATTGGCTTTTGACAGTGTTG+TGG | - | chr2.1:43581504-43581523 | None:intergenic | 40.0% |
| !!! | TTTTCCGTTTTAGAGGCTCT+AGG | + | chr2.1:43582271-43582290 | MS.gene80548:intron | 40.0% |
| AAGATGGGCAAAGCTTCTGA+GGG | + | chr2.1:43582604-43582623 | MS.gene80548:CDS | 45.0% | |
| ACCATGAACCTCGCTTTCTT+CGG | - | chr2.1:43581074-43581093 | None:intergenic | 45.0% | |
| AGAAACATCCGAAGAAAGCG+AGG | + | chr2.1:43581063-43581082 | MS.gene80548:CDS | 45.0% | |
| AGAGACCTGACAGAAAAACG+TGG | + | chr2.1:43583136-43583155 | MS.gene80548:intron | 45.0% | |
| AGTGCCAACCATTGGAAAAC+AGG | - | chr2.1:43580868-43580887 | None:intergenic | 45.0% | |
| ATTCGGGCAAGAGTTTGATC+TGG | + | chr2.1:43583018-43583037 | MS.gene80548:intron | 45.0% | |
| CATTAACTAATTGGCCAGGG+GGG | - | chr2.1:43583196-43583215 | None:intergenic | 45.0% | |
| CCGCAAAGAAATGATGCCAT+AGG | + | chr2.1:43581115-43581134 | MS.gene80548:CDS | 45.0% | |
| CTAACAGATCGGTGGAAGAT+TGG | + | chr2.1:43582809-43582828 | MS.gene80548:intron | 45.0% | |
| GGCCAGTTAGCAAATACAGT+AGG | + | chr2.1:43583069-43583088 | MS.gene80548:intron | 45.0% | |
| GTGATACTGCTCACAGAAGA+TGG | + | chr2.1:43582588-43582607 | MS.gene80548:CDS | 45.0% | |
| GTTGCTCAAAATCCCCTCAA+TGG | - | chr2.1:43580981-43581000 | None:intergenic | 45.0% | |
| TCCCTGAAAAGAGAGACCTA+TGG | - | chr2.1:43581134-43581153 | None:intergenic | 45.0% | |
| TTCGATGGCACAAGTCAAAG+AGG | - | chr2.1:43581784-43581803 | None:intergenic | 45.0% | |
| ! | AGATTGGGATACAGCATCGA+TGG | + | chr2.1:43582825-43582844 | MS.gene80548:CDS | 45.0% |
| ! | AGATTTCTGATTTTCCCCCC+TGG | + | chr2.1:43583179-43583198 | MS.gene80548:intron | 45.0% |
| ! | AGGGGAATTAGGAGTTCTAG+AGG | + | chr2.1:43581733-43581752 | MS.gene80548:intron | 45.0% |
| ! | ATAGGTGAAGGCACACACAA+AGG | + | chr2.1:43581544-43581563 | MS.gene80548:intron | 45.0% |
| ! | GCCATAGGTCTCTCTTTTCA+GGG | + | chr2.1:43581130-43581149 | MS.gene80548:CDS | 45.0% |
| ! | TGCCATAGGTCTCTCTTTTC+AGG | + | chr2.1:43581129-43581148 | MS.gene80548:CDS | 45.0% |
| !! | CCGATTGTTTTTCCGTTGCA+TGG | + | chr2.1:43583107-43583126 | MS.gene80548:intron | 45.0% |
| !! | CTTCTAGAGCAAAGCTTCGA+TGG | - | chr2.1:43581799-43581818 | None:intergenic | 45.0% |
| !! | GATTGGGATACAGCATCGAT+GGG | + | chr2.1:43582826-43582845 | MS.gene80548:CDS | 45.0% |
| !! | GGAATTAGGAGTTCTAGAGG+AGG | + | chr2.1:43581736-43581755 | MS.gene80548:intron | 45.0% |
| GAAGATGGGCAAAGCTTCTG+AGG | + | chr2.1:43582603-43582622 | MS.gene80548:CDS | 50.0% | |
| GACAGTGCAGTCATACACCA+AGG | + | chr2.1:43582848-43582867 | MS.gene80548:CDS | 50.0% | |
| GTTGCTGCAGCAATTGCTTG+TGG | + | chr2.1:43581028-43581047 | MS.gene80548:CDS | 50.0% | |
| TCCGAAGAAAGCGAGGTTCA+TGG | + | chr2.1:43581070-43581089 | MS.gene80548:CDS | 50.0% | |
| ! | GATTGCAGGCACATTTGGTG+CGG | + | chr2.1:43580936-43580955 | MS.gene80548:intron | 50.0% |
| !! | ATTGCAGGCACATTTGGTGC+GGG | + | chr2.1:43580937-43580956 | MS.gene80548:intron | 50.0% |
| ! | GCAAAGCTTCTGAGGGATCG+TGG | + | chr2.1:43582611-43582630 | MS.gene80548:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 43580787 | 43583305 | 43580787 | ID=MS.gene80548 |
| chr2.1 | mRNA | 43580787 | 43583305 | 43580787 | ID=MS.gene80548.t1;Parent=MS.gene80548 |
| chr2.1 | exon | 43580787 | 43580834 | 43580787 | ID=MS.gene80548.t1.exon1;Parent=MS.gene80548.t1 |
| chr2.1 | CDS | 43580787 | 43580834 | 43580787 | ID=cds.MS.gene80548.t1;Parent=MS.gene80548.t1 |
| chr2.1 | exon | 43580944 | 43581200 | 43580944 | ID=MS.gene80548.t1.exon2;Parent=MS.gene80548.t1 |
| chr2.1 | CDS | 43580944 | 43581200 | 43580944 | ID=cds.MS.gene80548.t1;Parent=MS.gene80548.t1 |
| chr2.1 | exon | 43582544 | 43582724 | 43582544 | ID=MS.gene80548.t1.exon3;Parent=MS.gene80548.t1 |
| chr2.1 | CDS | 43582544 | 43582724 | 43582544 | ID=cds.MS.gene80548.t1;Parent=MS.gene80548.t1 |
| chr2.1 | exon | 43582816 | 43582869 | 43582816 | ID=MS.gene80548.t1.exon4;Parent=MS.gene80548.t1 |
| chr2.1 | CDS | 43582816 | 43582869 | 43582816 | ID=cds.MS.gene80548.t1;Parent=MS.gene80548.t1 |
| chr2.1 | exon | 43583282 | 43583305 | 43583282 | ID=MS.gene80548.t1.exon5;Parent=MS.gene80548.t1 |
| chr2.1 | CDS | 43583282 | 43583305 | 43583282 | ID=cds.MS.gene80548.t1;Parent=MS.gene80548.t1 |
| Gene Sequence |
| Protein sequence |
