Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95614.t1 | XP_013449157.1 | 98.4 | 258 | 3 | 1 | 37 | 293 | 36 | 293 | 5.00E-81 | 311.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95614.t1 | O80450 | 72.8 | 254 | 62 | 1 | 45 | 291 | 33 | 286 | 1.9e-44 | 181.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95614.t1 | A0A072U082 | 98.4 | 258 | 3 | 1 | 37 | 293 | 36 | 293 | 3.6e-81 | 311.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene95614.t1 | TF | Trihelix |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene95614 | 0.815019 | 1.15E-51 | -1.69E-46 |
| MS.gene04918 | MS.gene95614 | 0.875696 | 2.51E-68 | -1.69E-46 |
| MS.gene04919 | MS.gene95614 | 0.850046 | 2.19E-60 | -1.69E-46 |
| MS.gene04920 | MS.gene95614 | 0.869976 | 2.07E-66 | -1.69E-46 |
| MS.gene049254 | MS.gene95614 | 0.805142 | 1.54E-49 | -1.69E-46 |
| MS.gene049283 | MS.gene95614 | 0.857369 | 1.71E-62 | -1.69E-46 |
| MS.gene049368 | MS.gene95614 | 0.841373 | 4.94E-58 | -1.69E-46 |
| MS.gene049419 | MS.gene95614 | -0.81586 | 7.44E-52 | -1.69E-46 |
| MS.gene049499 | MS.gene95614 | 0.86559 | 5.29E-65 | -1.69E-46 |
| MS.gene049983 | MS.gene95614 | 0.865432 | 5.93E-65 | -1.69E-46 |
| MS.gene04998 | MS.gene95614 | 0.81361 | 2.35E-51 | -1.69E-46 |
| MS.gene050238 | MS.gene95614 | 0.816325 | 5.86E-52 | -1.69E-46 |
| MS.gene050359 | MS.gene95614 | 0.803771 | 2.97E-49 | -1.69E-46 |
| MS.gene050414 | MS.gene95614 | 0.826919 | 2.08E-54 | -1.69E-46 |
| MS.gene050571 | MS.gene95614 | 0.807038 | 6.14E-50 | -1.69E-46 |
| MS.gene050646 | MS.gene95614 | 0.840024 | 1.12E-57 | -1.69E-46 |
| MS.gene050654 | MS.gene95614 | 0.832439 | 9.45E-56 | -1.69E-46 |
| MS.gene050941 | MS.gene95614 | 0.800275 | 1.56E-48 | -1.69E-46 |
| MS.gene050945 | MS.gene95614 | 0.812808 | 3.52E-51 | -1.69E-46 |
| MS.gene051003 | MS.gene95614 | 0.81738 | 3.40E-52 | -1.69E-46 |
| MS.gene051019 | MS.gene95614 | 0.821901 | 3.16E-53 | -1.69E-46 |
| MS.gene051043 | MS.gene95614 | 0.830129 | 3.49E-55 | -1.69E-46 |
| MS.gene051226 | MS.gene95614 | 0.801542 | 8.57E-49 | -1.69E-46 |
| MS.gene051234 | MS.gene95614 | 0.834772 | 2.47E-56 | -1.69E-46 |
| MS.gene051279 | MS.gene95614 | 0.807593 | 4.69E-50 | -1.69E-46 |
| MS.gene051332 | MS.gene95614 | 0.813051 | 3.11E-51 | -1.69E-46 |
| MS.gene051343 | MS.gene95614 | 0.800073 | 1.71E-48 | -1.69E-46 |
| MS.gene051637 | MS.gene95614 | 0.812964 | 3.25E-51 | -1.69E-46 |
| MS.gene051676 | MS.gene95614 | 0.820314 | 7.32E-53 | -1.69E-46 |
| MS.gene051699 | MS.gene95614 | 0.808038 | 3.77E-50 | -1.69E-46 |
| MS.gene051852 | MS.gene95614 | 0.813392 | 2.62E-51 | -1.69E-46 |
| MS.gene051975 | MS.gene95614 | 0.820267 | 7.51E-53 | -1.69E-46 |
| MS.gene052016 | MS.gene95614 | 0.840366 | 9.08E-58 | -1.69E-46 |
| MS.gene052072 | MS.gene95614 | 0.813191 | 2.90E-51 | -1.69E-46 |
| MS.gene052118 | MS.gene95614 | 0.841988 | 3.40E-58 | -1.69E-46 |
| MS.gene052296 | MS.gene95614 | 0.817947 | 2.53E-52 | -1.69E-46 |
| MS.gene052307 | MS.gene95614 | 0.819512 | 1.12E-52 | -1.69E-46 |
| MS.gene052342 | MS.gene95614 | 0.825328 | 4.98E-54 | -1.69E-46 |
| MS.gene052463 | MS.gene95614 | 0.839976 | 1.15E-57 | -1.69E-46 |
| MS.gene052518 | MS.gene95614 | 0.811768 | 5.93E-51 | -1.69E-46 |
| MS.gene052533 | MS.gene95614 | 0.837364 | 5.43E-57 | -1.69E-46 |
| MS.gene052534 | MS.gene95614 | 0.815423 | 9.31E-52 | -1.69E-46 |
| MS.gene052793 | MS.gene95614 | 0.804564 | 2.03E-49 | -1.69E-46 |
| MS.gene052932 | MS.gene95614 | 0.801935 | 7.12E-49 | -1.69E-46 |
| MS.gene053228 | MS.gene95614 | 0.82734 | 1.65E-54 | -1.69E-46 |
| MS.gene053272 | MS.gene95614 | -0.820383 | 7.06E-53 | -1.69E-46 |
| MS.gene053298 | MS.gene95614 | 0.816059 | 6.72E-52 | -1.69E-46 |
| MS.gene053564 | MS.gene95614 | 0.816987 | 4.16E-52 | -1.69E-46 |
| MS.gene053726 | MS.gene95614 | 0.800355 | 1.50E-48 | -1.69E-46 |
| MS.gene053879 | MS.gene95614 | 0.824861 | 6.42E-54 | -1.69E-46 |
| MS.gene053931 | MS.gene95614 | 0.851134 | 1.08E-60 | -1.69E-46 |
| MS.gene053963 | MS.gene95614 | 0.811286 | 7.56E-51 | -1.69E-46 |
| MS.gene054004 | MS.gene95614 | 0.811371 | 7.24E-51 | -1.69E-46 |
| MS.gene054142 | MS.gene95614 | 0.802911 | 4.48E-49 | -1.69E-46 |
| MS.gene054178 | MS.gene95614 | 0.812062 | 5.12E-51 | -1.69E-46 |
| MS.gene054489 | MS.gene95614 | 0.824712 | 6.96E-54 | -1.69E-46 |
| MS.gene05458 | MS.gene95614 | 0.839366 | 1.65E-57 | -1.69E-46 |
| MS.gene054772 | MS.gene95614 | 0.804292 | 2.32E-49 | -1.69E-46 |
| MS.gene054892 | MS.gene95614 | 0.880874 | 3.83E-70 | -1.69E-46 |
| MS.gene054893 | MS.gene95614 | 0.882867 | 7.27E-71 | -1.69E-46 |
| MS.gene054957 | MS.gene95614 | 0.815079 | 1.11E-51 | -1.69E-46 |
| MS.gene055150 | MS.gene95614 | 0.844549 | 7.06E-59 | -1.69E-46 |
| MS.gene055229 | MS.gene95614 | 0.805454 | 1.32E-49 | -1.69E-46 |
| MS.gene055513 | MS.gene95614 | 0.836804 | 7.55E-57 | -1.69E-46 |
| MS.gene055801 | MS.gene95614 | 0.803452 | 3.46E-49 | -1.69E-46 |
| MS.gene056045 | MS.gene95614 | 0.807716 | 4.41E-50 | -1.69E-46 |
| MS.gene056082 | MS.gene95614 | 0.815721 | 8.00E-52 | -1.69E-46 |
| MS.gene056181 | MS.gene95614 | 0.801914 | 7.19E-49 | -1.69E-46 |
| MS.gene05624 | MS.gene95614 | 0.836312 | 1.01E-56 | -1.69E-46 |
| MS.gene056677 | MS.gene95614 | 0.809973 | 1.45E-50 | -1.69E-46 |
| MS.gene056699 | MS.gene95614 | 0.829283 | 5.61E-55 | -1.69E-46 |
| MS.gene05686 | MS.gene95614 | 0.847184 | 1.36E-59 | -1.69E-46 |
| MS.gene05690 | MS.gene95614 | 0.810351 | 1.20E-50 | -1.69E-46 |
| MS.gene056973 | MS.gene95614 | 0.804139 | 2.49E-49 | -1.69E-46 |
| MS.gene057034 | MS.gene95614 | 0.801279 | 9.71E-49 | -1.69E-46 |
| MS.gene057102 | MS.gene95614 | 0.854146 | 1.49E-61 | -1.69E-46 |
| MS.gene057174 | MS.gene95614 | 0.833544 | 5.02E-56 | -1.69E-46 |
| MS.gene057208 | MS.gene95614 | 0.841918 | 3.55E-58 | -1.69E-46 |
| MS.gene057371 | MS.gene95614 | 0.829399 | 5.26E-55 | -1.69E-46 |
| MS.gene057622 | MS.gene95614 | 0.864661 | 1.04E-64 | -1.69E-46 |
| MS.gene058095 | MS.gene95614 | 0.844559 | 7.01E-59 | -1.69E-46 |
| MS.gene058159 | MS.gene95614 | 0.867135 | 1.71E-65 | -1.69E-46 |
| MS.gene058279 | MS.gene95614 | 0.822172 | 2.73E-53 | -1.69E-46 |
| MS.gene058292 | MS.gene95614 | 0.820286 | 7.43E-53 | -1.69E-46 |
| MS.gene058429 | MS.gene95614 | 0.830987 | 2.16E-55 | -1.69E-46 |
| MS.gene058592 | MS.gene95614 | 0.832538 | 8.93E-56 | -1.69E-46 |
| MS.gene058781 | MS.gene95614 | 0.840207 | 9.99E-58 | -1.69E-46 |
| MS.gene058783 | MS.gene95614 | 0.80882 | 2.57E-50 | -1.69E-46 |
| MS.gene05878 | MS.gene95614 | 0.825693 | 4.08E-54 | -1.69E-46 |
| MS.gene059146 | MS.gene95614 | 0.847433 | 1.16E-59 | -1.69E-46 |
| MS.gene059170 | MS.gene95614 | 0.853968 | 1.68E-61 | -1.69E-46 |
| MS.gene05952 | MS.gene95614 | 0.878305 | 3.13E-69 | -1.69E-46 |
| MS.gene05956 | MS.gene95614 | 0.800746 | 1.25E-48 | -1.69E-46 |
| MS.gene059778 | MS.gene95614 | 0.812954 | 3.27E-51 | -1.69E-46 |
| MS.gene05985 | MS.gene95614 | -0.863383 | 2.59E-64 | -1.69E-46 |
| MS.gene059901 | MS.gene95614 | -0.843523 | 1.33E-58 | -1.69E-46 |
| MS.gene060244 | MS.gene95614 | 0.826977 | 2.02E-54 | -1.69E-46 |
| MS.gene060259 | MS.gene95614 | 0.835943 | 1.25E-56 | -1.69E-46 |
| MS.gene060338 | MS.gene95614 | 0.802875 | 4.56E-49 | -1.69E-46 |
| MS.gene060365 | MS.gene95614 | 0.826511 | 2.61E-54 | -1.69E-46 |
| MS.gene060435 | MS.gene95614 | 0.808282 | 3.34E-50 | -1.69E-46 |
| MS.gene060512 | MS.gene95614 | 0.815212 | 1.04E-51 | -1.69E-46 |
| MS.gene060522 | MS.gene95614 | 0.852684 | 3.93E-61 | -1.69E-46 |
| MS.gene060527 | MS.gene95614 | 0.827185 | 1.80E-54 | -1.69E-46 |
| MS.gene060763 | MS.gene95614 | 0.805663 | 1.20E-49 | -1.69E-46 |
| MS.gene060777 | MS.gene95614 | 0.810632 | 1.05E-50 | -1.69E-46 |
| MS.gene060785 | MS.gene95614 | 0.800865 | 1.18E-48 | -1.69E-46 |
| MS.gene060932 | MS.gene95614 | 0.824234 | 9.02E-54 | -1.69E-46 |
| MS.gene060933 | MS.gene95614 | 0.845397 | 4.17E-59 | -1.69E-46 |
| MS.gene060935 | MS.gene95614 | 0.845235 | 4.61E-59 | -1.69E-46 |
| MS.gene060937 | MS.gene95614 | 0.859968 | 2.86E-63 | -1.69E-46 |
| MS.gene061100 | MS.gene95614 | 0.859061 | 5.37E-63 | -1.69E-46 |
| MS.gene061160 | MS.gene95614 | 0.824678 | 7.09E-54 | -1.69E-46 |
| MS.gene061188 | MS.gene95614 | 0.863894 | 1.80E-64 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95614.t1 | MTR_7g068770 | 97.279 | 294 | 6 | 2 | 1 | 293 | 1 | 293 | 0.0 | 575 |
| MS.gene95614.t1 | MTR_4g015680 | 76.984 | 252 | 57 | 1 | 41 | 291 | 28 | 279 | 6.21e-119 | 342 |
| MS.gene95614.t1 | MTR_5g026540 | 46.619 | 281 | 123 | 8 | 37 | 292 | 23 | 301 | 1.89e-56 | 184 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95614.t1 | AT5G01380 | 55.056 | 267 | 96 | 3 | 49 | 291 | 47 | 313 | 1.14e-74 | 231 |
| MS.gene95614.t1 | AT2G38250 | 57.299 | 274 | 96 | 4 | 33 | 291 | 19 | 286 | 3.17e-74 | 229 |
| MS.gene95614.t1 | AT3G25990 | 31.858 | 113 | 74 | 1 | 54 | 163 | 55 | 167 | 6.03e-14 | 71.6 |
| MS.gene95614.t1 | AT1G13450 | 33.696 | 92 | 61 | 0 | 54 | 145 | 87 | 178 | 1.10e-11 | 64.3 |
| MS.gene95614.t1 | AT1G13450 | 33.696 | 92 | 61 | 0 | 54 | 145 | 87 | 178 | 1.10e-11 | 64.3 |
| MS.gene95614.t1 | AT1G13450 | 33.696 | 92 | 61 | 0 | 54 | 145 | 87 | 178 | 1.89e-11 | 64.3 |
| MS.gene95614.t1 | AT1G13450 | 33.696 | 92 | 61 | 0 | 54 | 145 | 87 | 178 | 2.98e-11 | 62.4 |
Find 61 sgRNAs with CRISPR-Local
Find 81 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAGAAACTCCTTTGTTTCT+TGG | 0.162176 | 7.4:+34769370 | None:intergenic |
| AGAACTAGATCAAACTTTCA+TGG | 0.325286 | 7.4:-34769337 | MS.gene95614:CDS |
| GCTTGAAGCTCATTGTAAAA+TGG | 0.335464 | 7.4:+34768655 | None:intergenic |
| AAACCTTGTTACTCGCTATA+AGG | 0.341215 | 7.4:-34769217 | MS.gene95614:intron |
| GTTGATGTTGTTGATGATGT+TGG | 0.399503 | 7.4:+34769520 | None:intergenic |
| CAAAGAGGAACAAACAGCTT+TGG | 0.409902 | 7.4:-34769311 | MS.gene95614:CDS |
| TGAGAGGAGATTGAAGGAGA+TGG | 0.420471 | 7.4:-34768344 | MS.gene95614:CDS |
| AAAGAGGAACAAACAGCTTT+GGG | 0.427051 | 7.4:-34769310 | MS.gene95614:CDS |
| CTCTAACACTATGAAGGAAA+AGG | 0.429380 | 7.4:-34769280 | MS.gene95614:CDS |
| CAACATGCTCATAACATCAT+AGG | 0.432593 | 7.4:-34769444 | MS.gene95614:CDS |
| TGGAACAAAGATGGAGAGAA+AGG | 0.438127 | 7.4:-34768276 | MS.gene95614:CDS |
| AGATTCTTGAGGAGTTTATG+AGG | 0.459685 | 7.4:-34768420 | MS.gene95614:CDS |
| GGAGATTGAAGGAGATGGAG+TGG | 0.466184 | 7.4:-34768339 | MS.gene95614:CDS |
| TCTAACACTATGAAGGAAAA+GGG | 0.470472 | 7.4:-34769279 | MS.gene95614:CDS |
| GAAGGATTAGAGAAGAAGCT+AGG | 0.478364 | 7.4:-34768243 | MS.gene95614:CDS |
| TCAATGGATGGAAGCATTTG+AGG | 0.478413 | 7.4:-34768377 | MS.gene95614:CDS |
| TCTGAGGATGAAGAAGAGTT+AGG | 0.481694 | 7.4:-34768553 | MS.gene95614:CDS |
| AAGGAGGGTCAAAGAAGAAA+GGG | 0.488338 | 7.4:-34768588 | MS.gene95614:CDS |
| GATGGAGTGGAGACAAAGAA+TGG | 0.488486 | 7.4:-34768326 | MS.gene95614:CDS |
| GGAGAATGAGAGGAGATTGA+AGG | 0.494385 | 7.4:-34768350 | MS.gene95614:CDS |
| GGTTAATGATGGAACAAAGA+TGG | 0.500019 | 7.4:-34768285 | MS.gene95614:CDS |
| GTTAGGCAATGAAGAAAGTG+AGG | 0.500463 | 7.4:-34768536 | MS.gene95614:CDS |
| GAAGGAGGGTCAAAGAAGAA+AGG | 0.513151 | 7.4:-34768589 | MS.gene95614:CDS |
| GAGACAAAGAATGGAAGCAT+TGG | 0.518130 | 7.4:-34768317 | MS.gene95614:CDS |
| CAAGGATGCAAAGAATGCTA+TGG | 0.520600 | 7.4:-34768621 | MS.gene95614:CDS |
| GAGAAAGGGAAGAACAAAGA+AGG | 0.520747 | 7.4:-34768261 | MS.gene95614:CDS |
| TATGAGGCAGCAAATGCAAA+TGG | 0.520773 | 7.4:-34768404 | MS.gene95614:CDS |
| GGAACAAAGATGGAGAGAAA+GGG | 0.522554 | 7.4:-34768275 | MS.gene95614:CDS |
| TAGTGGTAGCAACAATTTGA+AGG | 0.523300 | 7.4:-34768443 | MS.gene95614:CDS |
| AGTTATCTCTAACACTATGA+AGG | 0.525230 | 7.4:-34769286 | MS.gene95614:CDS |
| TCACGGATAGATTTCCTCAA+TGG | 0.529342 | 7.4:-34769398 | MS.gene95614:CDS |
| GGTGGAGGAAATGATAATAG+TGG | 0.531218 | 7.4:-34768460 | MS.gene95614:CDS |
| TGGAAGCATTGGAGAATGAG+AGG | 0.532379 | 7.4:-34768306 | MS.gene95614:CDS |
| GGAGAATGAGAGGTTAATGA+TGG | 0.535043 | 7.4:-34768296 | MS.gene95614:CDS |
| CAGAACAGTGCAAGTGCAAG+TGG | 0.545159 | 7.4:-34769242 | MS.gene95614:CDS |
| CAATTTGAAGGAGATTCTTG+AGG | 0.551112 | 7.4:-34768431 | MS.gene95614:CDS |
| AAATGGAAATTGTTGTCTCA+TGG | 0.560448 | 7.4:+34768672 | None:intergenic |
| AAATGCAAATGGAAGCTCAA+TGG | 0.561080 | 7.4:-34768393 | MS.gene95614:CDS |
| AAAGGTAAGATGATAATTGG+TGG | 0.562069 | 7.4:-34768478 | MS.gene95614:CDS |
| TAGTGTTAACGTTGATGTCA+CGG | 0.564347 | 7.4:-34769415 | MS.gene95614:CDS |
| AAGGATTAGAGAAGAAGCTA+GGG | 0.564945 | 7.4:-34768242 | MS.gene95614:CDS |
| GTTTCTTGGATACTCCATTG+AGG | 0.570470 | 7.4:+34769384 | None:intergenic |
| ATGCTATGGGCTGAAGCAGA+AGG | 0.573045 | 7.4:-34768607 | MS.gene95614:CDS |
| GGATGGAAGCATTTGAGGCA+AGG | 0.573712 | 7.4:-34768372 | MS.gene95614:CDS |
| TTGAGGCAAGGGAGAATGAG+AGG | 0.584023 | 7.4:-34768360 | MS.gene95614:CDS |
| GCAAATGGAAGCTCAATGGA+TGG | 0.584747 | 7.4:-34768389 | MS.gene95614:CDS |
| GATGGAAGCATTTGAGGCAA+GGG | 0.587229 | 7.4:-34768371 | MS.gene95614:CDS |
| AGAAAGTGAGGGAGATCACA+AGG | 0.594638 | 7.4:-34768524 | MS.gene95614:CDS |
| TTAGGCAATGAAGAAAGTGA+GGG | 0.597635 | 7.4:-34768535 | MS.gene95614:CDS |
| GGTAAGATGATAATTGGTGG+AGG | 0.599324 | 7.4:-34768475 | MS.gene95614:CDS |
| CTATGGGCTGAAGCAGAAGG+AGG | 0.599474 | 7.4:-34768604 | MS.gene95614:CDS |
| AAACTTTCATGGAGACAAAG+AGG | 0.604350 | 7.4:-34769326 | MS.gene95614:CDS |
| TATAAAGGGATGTGAAACAA+TGG | 0.607384 | 7.4:-34768704 | MS.gene95614:intron |
| ATGGAGTATCCAAGAAACAA+AGG | 0.617542 | 7.4:-34769379 | MS.gene95614:CDS |
| AGGGGTGCATGTATCTTCTG+AGG | 0.631436 | 7.4:-34768569 | MS.gene95614:CDS |
| AAGTTTGATCTAGTTCTGAA+CGG | 0.639250 | 7.4:+34769343 | None:intergenic |
| AAGGATGCAAAGAATGCTAT+GGG | 0.642173 | 7.4:-34768620 | MS.gene95614:CDS |
| ATACCTTATAGCGAGTAACA+AGG | 0.647395 | 7.4:+34769214 | None:intergenic |
| AGGAGGGTCAAAGAAGAAAG+GGG | 0.670389 | 7.4:-34768587 | MS.gene95614:CDS |
| TATGGGCTGAAGCAGAAGGA+GGG | 0.673793 | 7.4:-34768603 | MS.gene95614:CDS |
| GAAAGTGAGGGAGATCACAA+GGG | 0.730407 | 7.4:-34768523 | MS.gene95614:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTGTTAAACTTTTTTTT+TGG | - | chr7.4:34768718-34768737 | MS.gene95614:intron | 10.0% |
| !! | ATTAAAAAGAAGAAGAAAAA+AGG | - | chr7.4:34769221-34769240 | MS.gene95614:CDS | 15.0% |
| !!! | ATTGTTTTGTTTATGTTTTT+GGG | - | chr7.4:34768989-34769008 | MS.gene95614:intron | 15.0% |
| !!! | TATTGTTTTGTTTATGTTTT+TGG | - | chr7.4:34768988-34769007 | MS.gene95614:intron | 15.0% |
| !! | AAAAAAGGTAAGATGATAAT+TGG | - | chr7.4:34769236-34769255 | MS.gene95614:CDS | 20.0% |
| !! | AAAAGGCAATAAATAAAAAG+TGG | + | chr7.4:34768796-34768815 | None:intergenic | 20.0% |
| !! | AAACAAGAATGATTTATGAT+TGG | + | chr7.4:34768640-34768659 | None:intergenic | 20.0% |
| !!! | TTATGTTTTTGGGATATAAA+GGG | - | chr7.4:34768999-34769018 | MS.gene95614:intron | 20.0% |
| !!! | TTTATGTTTTTGGGATATAA+AGG | - | chr7.4:34768998-34769017 | MS.gene95614:intron | 20.0% |
| ! | CACATAGAATGATTTATGAT+TGG | + | chr7.4:34768581-34768600 | None:intergenic | 25.0% |
| !! | TTTATATTGTGAGCTTTTCA+TGG | - | chr7.4:34768936-34768955 | MS.gene95614:intron | 25.0% |
| !!! | ATTGCCTTTTCAATTTGTTA+GGG | - | chr7.4:34768806-34768825 | MS.gene95614:intron | 25.0% |
| !!! | TATTGCCTTTTCAATTTGTT+AGG | - | chr7.4:34768805-34768824 | MS.gene95614:intron | 25.0% |
| AAAGGTAAGATGATAATTGG+TGG | - | chr7.4:34769239-34769258 | MS.gene95614:CDS | 30.0% | |
| AAATGGAAATTGTTGTCTCA+TGG | + | chr7.4:34769048-34769067 | None:intergenic | 30.0% | |
| AGAACTAGATCAAACTTTCA+TGG | - | chr7.4:34768380-34768399 | MS.gene95614:CDS | 30.0% | |
| AGTTATCTCTAACACTATGA+AGG | - | chr7.4:34768431-34768450 | MS.gene95614:CDS | 30.0% | |
| TATAAAGGGATGTGAAACAA+TGG | - | chr7.4:34769013-34769032 | MS.gene95614:intron | 30.0% | |
| TCTAACACTATGAAGGAAAA+GGG | - | chr7.4:34768438-34768457 | MS.gene95614:CDS | 30.0% | |
| TTTCTCTCTCATGATTCAAA+GGG | - | chr7.4:34768837-34768856 | MS.gene95614:intron | 30.0% | |
| TTTGAATCATGAGAGAGAAA+AGG | + | chr7.4:34768837-34768856 | None:intergenic | 30.0% | |
| ! | TAAGAAACTCCTTTGTTTCT+TGG | + | chr7.4:34768350-34768369 | None:intergenic | 30.0% |
| ! | TTTTCTCTCTCATGATTCAA+AGG | - | chr7.4:34768836-34768855 | MS.gene95614:intron | 30.0% |
| !! | AAGTTTGATCTAGTTCTGAA+CGG | + | chr7.4:34768377-34768396 | None:intergenic | 30.0% |
| !!! | TTCAAGCTATTTTTAGTGCA+AGG | - | chr7.4:34769078-34769097 | MS.gene95614:intron | 30.0% |
| !!! | TTGCCTTTTCAATTTGTTAG+GGG | - | chr7.4:34768807-34768826 | MS.gene95614:intron | 30.0% |
| AAACCTTGTTACTCGCTATA+AGG | - | chr7.4:34768500-34768519 | MS.gene95614:CDS | 35.0% | |
| AAACTTTCATGGAGACAAAG+AGG | - | chr7.4:34768391-34768410 | MS.gene95614:CDS | 35.0% | |
| AAAGAGGAACAAACAGCTTT+GGG | - | chr7.4:34768407-34768426 | MS.gene95614:CDS | 35.0% | |
| AAATGCAAATGGAAGCTCAA+TGG | - | chr7.4:34769324-34769343 | MS.gene95614:CDS | 35.0% | |
| AAGGATGCAAAGAATGCTAT+GGG | - | chr7.4:34769097-34769116 | MS.gene95614:intron | 35.0% | |
| AAGGATTAGAGAAGAAGCTA+GGG | - | chr7.4:34769475-34769494 | MS.gene95614:CDS | 35.0% | |
| AGATTCTTGAGGAGTTTATG+AGG | - | chr7.4:34769297-34769316 | MS.gene95614:CDS | 35.0% | |
| ATACCTTATAGCGAGTAACA+AGG | + | chr7.4:34768506-34768525 | None:intergenic | 35.0% | |
| CAACATGCTCATAACATCAT+AGG | - | chr7.4:34768273-34768292 | MS.gene95614:CDS | 35.0% | |
| CAATTTGAAGGAGATTCTTG+AGG | - | chr7.4:34769286-34769305 | MS.gene95614:CDS | 35.0% | |
| CTCTAACACTATGAAGGAAA+AGG | - | chr7.4:34768437-34768456 | MS.gene95614:CDS | 35.0% | |
| GCTTGAAGCTCATTGTAAAA+TGG | + | chr7.4:34769065-34769084 | None:intergenic | 35.0% | |
| TACCCCCTAACAAATTGAAA+AGG | + | chr7.4:34768813-34768832 | None:intergenic | 35.0% | |
| TAGTGGTAGCAACAATTTGA+AGG | - | chr7.4:34769274-34769293 | MS.gene95614:CDS | 35.0% | |
| TAGTGTTAACGTTGATGTCA+CGG | - | chr7.4:34768302-34768321 | MS.gene95614:CDS | 35.0% | |
| TTAGGCAATGAAGAAAGTGA+GGG | - | chr7.4:34769182-34769201 | MS.gene95614:intron | 35.0% | |
| ! | ATGGAGTATCCAAGAAACAA+AGG | - | chr7.4:34768338-34768357 | MS.gene95614:CDS | 35.0% |
| ! | GGTTAATGATGGAACAAAGA+TGG | - | chr7.4:34769432-34769451 | MS.gene95614:CDS | 35.0% |
| !! | GTTGATGTTGTTGATGATGT+TGG | + | chr7.4:34768200-34768219 | None:intergenic | 35.0% |
| !!! | TGCCTTTTCAATTTGTTAGG+GGG | - | chr7.4:34768808-34768827 | MS.gene95614:intron | 35.0% |
| AAGGAGGGTCAAAGAAGAAA+GGG | - | chr7.4:34769129-34769148 | MS.gene95614:intron | 40.0% | |
| CAAAGAGGAACAAACAGCTT+TGG | - | chr7.4:34768406-34768425 | MS.gene95614:CDS | 40.0% | |
| CAAGGATGCAAAGAATGCTA+TGG | - | chr7.4:34769096-34769115 | MS.gene95614:intron | 40.0% | |
| GAAGGATTAGAGAAGAAGCT+AGG | - | chr7.4:34769474-34769493 | MS.gene95614:CDS | 40.0% | |
| GAGAAAGGGAAGAACAAAGA+AGG | - | chr7.4:34769456-34769475 | MS.gene95614:CDS | 40.0% | |
| GGAACAAAGATGGAGAGAAA+GGG | - | chr7.4:34769442-34769461 | MS.gene95614:CDS | 40.0% | |
| GGAGAATGAGAGGTTAATGA+TGG | - | chr7.4:34769421-34769440 | MS.gene95614:CDS | 40.0% | |
| GGTAAGATGATAATTGGTGG+AGG | - | chr7.4:34769242-34769261 | MS.gene95614:CDS | 40.0% | |
| GGTGGAGGAAATGATAATAG+TGG | - | chr7.4:34769257-34769276 | MS.gene95614:CDS | 40.0% | |
| GTTAGGCAATGAAGAAAGTG+AGG | - | chr7.4:34769181-34769200 | MS.gene95614:intron | 40.0% | |
| GTTTCTTGGATACTCCATTG+AGG | + | chr7.4:34768336-34768355 | None:intergenic | 40.0% | |
| TATGAGGCAGCAAATGCAAA+TGG | - | chr7.4:34769313-34769332 | MS.gene95614:CDS | 40.0% | |
| TCACGGATAGATTTCCTCAA+TGG | - | chr7.4:34768319-34768338 | MS.gene95614:CDS | 40.0% | |
| TCTGAGGATGAAGAAGAGTT+AGG | - | chr7.4:34769164-34769183 | MS.gene95614:intron | 40.0% | |
| TGGAACAAAGATGGAGAGAA+AGG | - | chr7.4:34769441-34769460 | MS.gene95614:CDS | 40.0% | |
| ! | GAGACAAAGAATGGAAGCAT+TGG | - | chr7.4:34769400-34769419 | MS.gene95614:CDS | 40.0% |
| !! | TCAATGGATGGAAGCATTTG+AGG | - | chr7.4:34769340-34769359 | MS.gene95614:CDS | 40.0% |
| AGAAAGTGAGGGAGATCACA+AGG | - | chr7.4:34769193-34769212 | MS.gene95614:intron | 45.0% | |
| AGGAGGGTCAAAGAAGAAAG+GGG | - | chr7.4:34769130-34769149 | MS.gene95614:intron | 45.0% | |
| GAAAGTGAGGGAGATCACAA+GGG | - | chr7.4:34769194-34769213 | MS.gene95614:intron | 45.0% | |
| GAAGGAGGGTCAAAGAAGAA+AGG | - | chr7.4:34769128-34769147 | MS.gene95614:intron | 45.0% | |
| GATGGAGTGGAGACAAAGAA+TGG | - | chr7.4:34769391-34769410 | MS.gene95614:CDS | 45.0% | |
| GCAAATGGAAGCTCAATGGA+TGG | - | chr7.4:34769328-34769347 | MS.gene95614:CDS | 45.0% | |
| GGAGAATGAGAGGAGATTGA+AGG | - | chr7.4:34769367-34769386 | MS.gene95614:CDS | 45.0% | |
| TGAGAGGAGATTGAAGGAGA+TGG | - | chr7.4:34769373-34769392 | MS.gene95614:CDS | 45.0% | |
| !! | GATGGAAGCATTTGAGGCAA+GGG | - | chr7.4:34769346-34769365 | MS.gene95614:CDS | 45.0% |
| !! | TGGAAGCATTGGAGAATGAG+AGG | - | chr7.4:34769411-34769430 | MS.gene95614:CDS | 45.0% |
| CAGAACAGTGCAAGTGCAAG+TGG | - | chr7.4:34768475-34768494 | MS.gene95614:CDS | 50.0% | |
| GGAGATTGAAGGAGATGGAG+TGG | - | chr7.4:34769378-34769397 | MS.gene95614:CDS | 50.0% | |
| TTGAGGCAAGGGAGAATGAG+AGG | - | chr7.4:34769357-34769376 | MS.gene95614:CDS | 50.0% | |
| ! | AGGGGTGCATGTATCTTCTG+AGG | - | chr7.4:34769148-34769167 | MS.gene95614:intron | 50.0% |
| ! | ATGCTATGGGCTGAAGCAGA+AGG | - | chr7.4:34769110-34769129 | MS.gene95614:intron | 50.0% |
| ! | TATGGGCTGAAGCAGAAGGA+GGG | - | chr7.4:34769114-34769133 | MS.gene95614:intron | 50.0% |
| !! | GGATGGAAGCATTTGAGGCA+AGG | - | chr7.4:34769345-34769364 | MS.gene95614:CDS | 50.0% |
| ! | CTATGGGCTGAAGCAGAAGG+AGG | - | chr7.4:34769113-34769132 | MS.gene95614:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 34768180 | 34769559 | 34768180 | ID=MS.gene95614 |
| chr7.4 | mRNA | 34768180 | 34769559 | 34768180 | ID=MS.gene95614.t1;Parent=MS.gene95614 |
| chr7.4 | exon | 34769218 | 34769559 | 34769218 | ID=MS.gene95614.t1.exon1;Parent=MS.gene95614.t1 |
| chr7.4 | CDS | 34769218 | 34769559 | 34769218 | ID=cds.MS.gene95614.t1;Parent=MS.gene95614.t1 |
| chr7.4 | exon | 34768180 | 34768719 | 34768180 | ID=MS.gene95614.t1.exon2;Parent=MS.gene95614.t1 |
| chr7.4 | CDS | 34768180 | 34768719 | 34768180 | ID=cds.MS.gene95614.t1;Parent=MS.gene95614.t1 |
| Gene Sequence |
| Protein sequence |
