Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84179.t1 | XP_013449157.1 | 98.4 | 258 | 3 | 1 | 37 | 293 | 36 | 293 | 5.00E-81 | 311.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84179.t1 | O80450 | 72.8 | 254 | 62 | 1 | 45 | 291 | 33 | 286 | 1.9e-44 | 181.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84179.t1 | A0A072U082 | 98.4 | 258 | 3 | 1 | 37 | 293 | 36 | 293 | 3.6e-81 | 311.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene84179.t1 | TF | Trihelix |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene84179 | 0.822658 | 2.11E-53 | -1.69E-46 |
| MS.gene04918 | MS.gene84179 | 0.878197 | 3.41E-69 | -1.69E-46 |
| MS.gene04919 | MS.gene84179 | 0.854486 | 1.19E-61 | -1.69E-46 |
| MS.gene04920 | MS.gene84179 | 0.878337 | 3.05E-69 | -1.69E-46 |
| MS.gene049254 | MS.gene84179 | 0.807254 | 5.53E-50 | -1.69E-46 |
| MS.gene049283 | MS.gene84179 | 0.853753 | 1.94E-61 | -1.69E-46 |
| MS.gene049368 | MS.gene84179 | 0.820805 | 5.65E-53 | -1.69E-46 |
| MS.gene049499 | MS.gene84179 | 0.880266 | 6.32E-70 | -1.69E-46 |
| MS.gene049983 | MS.gene84179 | 0.84273 | 2.16E-58 | -1.69E-46 |
| MS.gene050238 | MS.gene84179 | 0.807301 | 5.40E-50 | -1.69E-46 |
| MS.gene050414 | MS.gene84179 | 0.813853 | 2.07E-51 | -1.69E-46 |
| MS.gene050571 | MS.gene84179 | 0.800081 | 1.70E-48 | -1.69E-46 |
| MS.gene050646 | MS.gene84179 | 0.824398 | 8.25E-54 | -1.69E-46 |
| MS.gene050654 | MS.gene84179 | 0.815851 | 7.48E-52 | -1.69E-46 |
| MS.gene050945 | MS.gene84179 | 0.827963 | 1.17E-54 | -1.69E-46 |
| MS.gene051003 | MS.gene84179 | 0.814539 | 1.46E-51 | -1.69E-46 |
| MS.gene051019 | MS.gene84179 | 0.820518 | 6.57E-53 | -1.69E-46 |
| MS.gene051043 | MS.gene84179 | 0.810332 | 1.21E-50 | -1.69E-46 |
| MS.gene051234 | MS.gene84179 | 0.830543 | 2.77E-55 | -1.69E-46 |
| MS.gene051332 | MS.gene84179 | 0.805943 | 1.05E-49 | -1.69E-46 |
| MS.gene051343 | MS.gene84179 | 0.812459 | 4.19E-51 | -1.69E-46 |
| MS.gene051637 | MS.gene84179 | 0.810668 | 1.03E-50 | -1.69E-46 |
| MS.gene051676 | MS.gene84179 | 0.808624 | 2.83E-50 | -1.69E-46 |
| MS.gene051699 | MS.gene84179 | 0.816913 | 4.33E-52 | -1.69E-46 |
| MS.gene051832 | MS.gene84179 | 0.800639 | 1.31E-48 | -1.69E-46 |
| MS.gene051852 | MS.gene84179 | 0.814818 | 1.27E-51 | -1.69E-46 |
| MS.gene051959 | MS.gene84179 | 0.804669 | 1.93E-49 | -1.69E-46 |
| MS.gene051960 | MS.gene84179 | 0.807163 | 5.78E-50 | -1.69E-46 |
| MS.gene051975 | MS.gene84179 | 0.812681 | 3.75E-51 | -1.69E-46 |
| MS.gene052016 | MS.gene84179 | 0.832179 | 1.10E-55 | -1.69E-46 |
| MS.gene052072 | MS.gene84179 | 0.814625 | 1.40E-51 | -1.69E-46 |
| MS.gene052118 | MS.gene84179 | 0.831777 | 1.38E-55 | -1.69E-46 |
| MS.gene052296 | MS.gene84179 | 0.800624 | 1.32E-48 | -1.69E-46 |
| MS.gene052307 | MS.gene84179 | 0.817141 | 3.85E-52 | -1.69E-46 |
| MS.gene052342 | MS.gene84179 | 0.802062 | 6.71E-49 | -1.69E-46 |
| MS.gene052463 | MS.gene84179 | 0.830506 | 2.83E-55 | -1.69E-46 |
| MS.gene052533 | MS.gene84179 | 0.84888 | 4.62E-60 | -1.69E-46 |
| MS.gene052534 | MS.gene84179 | 0.817363 | 3.43E-52 | -1.69E-46 |
| MS.gene052793 | MS.gene84179 | 0.812212 | 4.75E-51 | -1.69E-46 |
| MS.gene053228 | MS.gene84179 | 0.813369 | 2.65E-51 | -1.69E-46 |
| MS.gene053272 | MS.gene84179 | -0.827366 | 1.63E-54 | -1.69E-46 |
| MS.gene053879 | MS.gene84179 | 0.808011 | 3.82E-50 | -1.69E-46 |
| MS.gene053931 | MS.gene84179 | 0.832095 | 1.15E-55 | -1.69E-46 |
| MS.gene053963 | MS.gene84179 | 0.802981 | 4.34E-49 | -1.69E-46 |
| MS.gene054004 | MS.gene84179 | 0.806346 | 8.60E-50 | -1.69E-46 |
| MS.gene054142 | MS.gene84179 | 0.800545 | 1.37E-48 | -1.69E-46 |
| MS.gene054178 | MS.gene84179 | 0.819946 | 8.89E-53 | -1.69E-46 |
| MS.gene05458 | MS.gene84179 | 0.829704 | 4.44E-55 | -1.69E-46 |
| MS.gene054772 | MS.gene84179 | 0.804212 | 2.41E-49 | -1.69E-46 |
| MS.gene054892 | MS.gene84179 | 0.870251 | 1.68E-66 | -1.69E-46 |
| MS.gene054893 | MS.gene84179 | 0.870968 | 9.77E-67 | -1.69E-46 |
| MS.gene054957 | MS.gene84179 | 0.816156 | 6.40E-52 | -1.69E-46 |
| MS.gene055150 | MS.gene84179 | 0.833975 | 3.91E-56 | -1.69E-46 |
| MS.gene055386 | MS.gene84179 | 0.815641 | 8.33E-52 | -1.69E-46 |
| MS.gene055513 | MS.gene84179 | 0.831044 | 2.09E-55 | -1.69E-46 |
| MS.gene055801 | MS.gene84179 | 0.827682 | 1.37E-54 | -1.69E-46 |
| MS.gene05624 | MS.gene84179 | 0.841272 | 5.25E-58 | -1.69E-46 |
| MS.gene056677 | MS.gene84179 | 0.816297 | 5.95E-52 | -1.69E-46 |
| MS.gene056699 | MS.gene84179 | 0.833779 | 4.38E-56 | -1.69E-46 |
| MS.gene05686 | MS.gene84179 | 0.843447 | 1.39E-58 | -1.69E-46 |
| MS.gene056973 | MS.gene84179 | 0.806662 | 7.38E-50 | -1.69E-46 |
| MS.gene057034 | MS.gene84179 | 0.814597 | 1.42E-51 | -1.69E-46 |
| MS.gene057102 | MS.gene84179 | 0.851946 | 6.37E-61 | -1.69E-46 |
| MS.gene057174 | MS.gene84179 | 0.832429 | 9.50E-56 | -1.69E-46 |
| MS.gene057208 | MS.gene84179 | 0.82106 | 4.93E-53 | -1.69E-46 |
| MS.gene057371 | MS.gene84179 | 0.815412 | 9.37E-52 | -1.69E-46 |
| MS.gene057622 | MS.gene84179 | 0.851722 | 7.37E-61 | -1.69E-46 |
| MS.gene057890 | MS.gene84179 | -0.803078 | 4.14E-49 | -1.69E-46 |
| MS.gene058095 | MS.gene84179 | 0.838719 | 2.43E-57 | -1.69E-46 |
| MS.gene058159 | MS.gene84179 | 0.848879 | 4.63E-60 | -1.69E-46 |
| MS.gene058279 | MS.gene84179 | 0.812438 | 4.24E-51 | -1.69E-46 |
| MS.gene058292 | MS.gene84179 | 0.810319 | 1.22E-50 | -1.69E-46 |
| MS.gene058429 | MS.gene84179 | 0.801923 | 7.16E-49 | -1.69E-46 |
| MS.gene058592 | MS.gene84179 | 0.828451 | 8.93E-55 | -1.69E-46 |
| MS.gene058781 | MS.gene84179 | 0.844317 | 8.15E-59 | -1.69E-46 |
| MS.gene058783 | MS.gene84179 | 0.810374 | 1.19E-50 | -1.69E-46 |
| MS.gene05878 | MS.gene84179 | 0.828505 | 8.66E-55 | -1.69E-46 |
| MS.gene059146 | MS.gene84179 | 0.851004 | 1.18E-60 | -1.69E-46 |
| MS.gene059170 | MS.gene84179 | 0.849027 | 4.21E-60 | -1.69E-46 |
| MS.gene05952 | MS.gene84179 | 0.878759 | 2.17E-69 | -1.69E-46 |
| MS.gene05956 | MS.gene84179 | 0.802171 | 6.37E-49 | -1.69E-46 |
| MS.gene059778 | MS.gene84179 | 0.810674 | 1.03E-50 | -1.69E-46 |
| MS.gene05985 | MS.gene84179 | -0.859815 | 3.18E-63 | -1.69E-46 |
| MS.gene059901 | MS.gene84179 | -0.837436 | 5.21E-57 | -1.69E-46 |
| MS.gene060244 | MS.gene84179 | 0.825983 | 3.48E-54 | -1.69E-46 |
| MS.gene060259 | MS.gene84179 | 0.821724 | 3.47E-53 | -1.69E-46 |
| MS.gene060365 | MS.gene84179 | 0.831214 | 1.90E-55 | -1.69E-46 |
| MS.gene060512 | MS.gene84179 | 0.819421 | 1.17E-52 | -1.69E-46 |
| MS.gene060522 | MS.gene84179 | 0.844478 | 7.38E-59 | -1.69E-46 |
| MS.gene060527 | MS.gene84179 | 0.82986 | 4.06E-55 | -1.69E-46 |
| MS.gene060932 | MS.gene84179 | 0.801762 | 7.73E-49 | -1.69E-46 |
| MS.gene060933 | MS.gene84179 | 0.83976 | 1.31E-57 | -1.69E-46 |
| MS.gene060935 | MS.gene84179 | 0.840604 | 7.87E-58 | -1.69E-46 |
| MS.gene060937 | MS.gene84179 | 0.86101 | 1.38E-63 | -1.69E-46 |
| MS.gene061100 | MS.gene84179 | 0.86367 | 2.11E-64 | -1.69E-46 |
| MS.gene061160 | MS.gene84179 | 0.843957 | 1.02E-58 | -1.69E-46 |
| MS.gene061188 | MS.gene84179 | 0.858145 | 1.01E-62 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84179.t1 | MTR_7g068770 | 97.279 | 294 | 6 | 2 | 1 | 293 | 1 | 293 | 0.0 | 575 |
| MS.gene84179.t1 | MTR_4g015680 | 76.984 | 252 | 57 | 1 | 41 | 291 | 28 | 279 | 6.21e-119 | 342 |
| MS.gene84179.t1 | MTR_5g026540 | 46.619 | 281 | 123 | 8 | 37 | 292 | 23 | 301 | 1.89e-56 | 184 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84179.t1 | AT5G01380 | 55.056 | 267 | 96 | 3 | 49 | 291 | 47 | 313 | 1.14e-74 | 231 |
| MS.gene84179.t1 | AT2G38250 | 57.299 | 274 | 96 | 4 | 33 | 291 | 19 | 286 | 3.17e-74 | 229 |
| MS.gene84179.t1 | AT3G25990 | 31.858 | 113 | 74 | 1 | 54 | 163 | 55 | 167 | 6.03e-14 | 71.6 |
| MS.gene84179.t1 | AT1G13450 | 33.696 | 92 | 61 | 0 | 54 | 145 | 87 | 178 | 1.10e-11 | 64.3 |
| MS.gene84179.t1 | AT1G13450 | 33.696 | 92 | 61 | 0 | 54 | 145 | 87 | 178 | 1.10e-11 | 64.3 |
| MS.gene84179.t1 | AT1G13450 | 33.696 | 92 | 61 | 0 | 54 | 145 | 87 | 178 | 1.89e-11 | 64.3 |
| MS.gene84179.t1 | AT1G13450 | 33.696 | 92 | 61 | 0 | 54 | 145 | 87 | 178 | 2.98e-11 | 62.4 |
Find 60 sgRNAs with CRISPR-Local
Find 78 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAGAAACTCCTTTGTTTCT+TGG | 0.162176 | 7.1:+33040239 | None:intergenic |
| AGAACTAGATCAAACTTTCA+TGG | 0.325286 | 7.1:-33040206 | MS.gene84179:CDS |
| GCTTGAAGCTCATTGTAAAA+TGG | 0.335464 | 7.1:+33039528 | None:intergenic |
| AAACCTTGTTACTCGCTATA+AGG | 0.349897 | 7.1:-33040086 | MS.gene84179:intron |
| GTTGATGTTGTTGATGATGT+TGG | 0.399503 | 7.1:+33040389 | None:intergenic |
| TGAGAGGAGATTGAAGGAGA+TGG | 0.403012 | 7.1:-33039217 | MS.gene84179:CDS |
| CAAAGAGGAACAAACAGCTT+TGG | 0.409902 | 7.1:-33040180 | MS.gene84179:CDS |
| AAAGAGGAACAAACAGCTTT+GGG | 0.427051 | 7.1:-33040179 | MS.gene84179:CDS |
| CTCTAACACTATGAAGGAAA+AGG | 0.429380 | 7.1:-33040149 | MS.gene84179:CDS |
| CAACATGCTCATAACATCAT+AGG | 0.432593 | 7.1:-33040313 | MS.gene84179:CDS |
| TGGAACAAAGATGGAGAGAA+AGG | 0.438127 | 7.1:-33039149 | MS.gene84179:CDS |
| GGAGATTGAAGGAGATGGAA+TGG | 0.449920 | 7.1:-33039212 | MS.gene84179:CDS |
| AGAGAATGAGAGGAGATTGA+AGG | 0.459157 | 7.1:-33039223 | MS.gene84179:CDS |
| GAAGGATTAGAGAGGAAGCT+AGG | 0.463838 | 7.1:-33039116 | MS.gene84179:CDS |
| TCTAACACTATGAAGGAAAA+GGG | 0.470472 | 7.1:-33040148 | MS.gene84179:CDS |
| AGATTCTTGAGGAGTTTATG+AGG | 0.475642 | 7.1:-33039293 | MS.gene84179:CDS |
| TCAATGGATGGAAGCATTTG+AGG | 0.478413 | 7.1:-33039250 | MS.gene84179:CDS |
| TCTGAGGATGAAGAAGAGTT+AGG | 0.481694 | 7.1:-33039426 | MS.gene84179:CDS |
| AAGGAGGGTCAAAGAAGAAA+GGG | 0.488338 | 7.1:-33039461 | MS.gene84179:CDS |
| AAATGCAAATGGAAGCTCAA+TGG | 0.497271 | 7.1:-33039266 | MS.gene84179:CDS |
| GATGGAATGGAGACAAAGAA+TGG | 0.497428 | 7.1:-33039199 | MS.gene84179:CDS |
| TATGAGGCAACAAATGCAAA+TGG | 0.498234 | 7.1:-33039277 | MS.gene84179:CDS |
| GGTTAATGATGGAACAAAGA+TGG | 0.500019 | 7.1:-33039158 | MS.gene84179:CDS |
| GTTAGGCAATGAAGAAAGTG+AGG | 0.500463 | 7.1:-33039409 | MS.gene84179:CDS |
| GAGACAAAGAATGGAAGCAT+TGG | 0.501965 | 7.1:-33039190 | MS.gene84179:CDS |
| GAAGGAGGGTCAAAGAAGAA+AGG | 0.513151 | 7.1:-33039462 | MS.gene84179:CDS |
| AAAGGTAAAATGATAATTGG+TGG | 0.519046 | 7.1:-33039351 | MS.gene84179:CDS |
| CAAGGATGCAAAGAATGCTA+TGG | 0.520600 | 7.1:-33039494 | MS.gene84179:CDS |
| GAGAAAGGGAAGAACAAAGA+AGG | 0.520747 | 7.1:-33039134 | MS.gene84179:CDS |
| GGAACAAAGATGGAGAGAAA+GGG | 0.522554 | 7.1:-33039148 | MS.gene84179:CDS |
| TAGTGGTAGCAACAATTTGA+AGG | 0.523300 | 7.1:-33039316 | MS.gene84179:CDS |
| AGTTATCTCTAACACTATGA+AGG | 0.525230 | 7.1:-33040155 | MS.gene84179:CDS |
| TCACGGATAGATTTCCTCAA+TGG | 0.529342 | 7.1:-33040267 | MS.gene84179:CDS |
| GGTGGAGGAAATGATAATAG+TGG | 0.531218 | 7.1:-33039333 | MS.gene84179:CDS |
| TGGAAGCATTGGAGAATGAG+AGG | 0.532379 | 7.1:-33039179 | MS.gene84179:CDS |
| GGAGAATGAGAGGTTAATGA+TGG | 0.535043 | 7.1:-33039169 | MS.gene84179:CDS |
| CAGAACAGTGCAAGTGCAAG+TGG | 0.545159 | 7.1:-33040111 | MS.gene84179:CDS |
| CAATTTGAAGGAGATTCTTG+AGG | 0.551112 | 7.1:-33039304 | MS.gene84179:CDS |
| GGTAAAATGATAATTGGTGG+AGG | 0.559022 | 7.1:-33039348 | MS.gene84179:CDS |
| AAATGGAAATTGTTGTCTCA+TGG | 0.560448 | 7.1:+33039545 | None:intergenic |
| AAGGATTAGAGAGGAAGCTA+GGG | 0.562239 | 7.1:-33039115 | MS.gene84179:CDS |
| TAGTGTTAACGTTGATGTCA+CGG | 0.564347 | 7.1:-33040284 | MS.gene84179:CDS |
| GTTTCTTGGATACTCCATTG+AGG | 0.570470 | 7.1:+33040253 | None:intergenic |
| ATGCTATGGGCTGAAGCAGA+AGG | 0.573045 | 7.1:-33039480 | MS.gene84179:CDS |
| GCAAATGGAAGCTCAATGGA+TGG | 0.584747 | 7.1:-33039262 | MS.gene84179:CDS |
| AGAAAGTGAGGGAGATCACA+AGG | 0.594638 | 7.1:-33039397 | MS.gene84179:CDS |
| TTAGGCAATGAAGAAAGTGA+GGG | 0.597635 | 7.1:-33039408 | MS.gene84179:CDS |
| CTATGGGCTGAAGCAGAAGG+AGG | 0.599474 | 7.1:-33039477 | MS.gene84179:CDS |
| TATAAAGGGATGTGAAACAA+TGG | 0.603946 | 7.1:-33039577 | MS.gene84179:intron |
| AAACTTTCATGGAGACAAAG+AGG | 0.604350 | 7.1:-33040195 | MS.gene84179:CDS |
| TTGAGGCAAGAGAGAATGAG+AGG | 0.604352 | 7.1:-33039233 | MS.gene84179:CDS |
| AGAACAAAGAAGGATTAGAG+AGG | 0.604574 | 7.1:-33039124 | MS.gene84179:CDS |
| ATGGAGTATCCAAGAAACAA+AGG | 0.617542 | 7.1:-33040248 | MS.gene84179:CDS |
| AGGGGTGCATGTATCTTCTG+AGG | 0.631436 | 7.1:-33039442 | MS.gene84179:CDS |
| AAGTTTGATCTAGTTCTGAA+CGG | 0.639250 | 7.1:+33040212 | None:intergenic |
| AAGGATGCAAAGAATGCTAT+GGG | 0.642173 | 7.1:-33039493 | MS.gene84179:CDS |
| GTACCTTATAGCGAGTAACA+AGG | 0.656453 | 7.1:+33040083 | None:intergenic |
| AGGAGGGTCAAAGAAGAAAG+GGG | 0.670389 | 7.1:-33039460 | MS.gene84179:CDS |
| TATGGGCTGAAGCAGAAGGA+GGG | 0.673793 | 7.1:-33039476 | MS.gene84179:CDS |
| GAAAGTGAGGGAGATCACAA+GGG | 0.730407 | 7.1:-33039396 | MS.gene84179:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTGTTAAACTTTTTTTT+TGG | - | chr7.1:33039586-33039605 | MS.gene84179:intron | 10.0% |
| !! | AAAAAAGGTAAAATGATAAT+TGG | - | chr7.1:33040105-33040124 | MS.gene84179:CDS | 15.0% |
| !! | ATTAAAAAGAAGAAGAAAAA+AGG | - | chr7.1:33040090-33040109 | MS.gene84179:CDS | 15.0% |
| !!! | TTATGTTTTTGTGATATAAA+GGG | - | chr7.1:33039868-33039887 | MS.gene84179:intron | 15.0% |
| !!! | TTTATGTTTTTGTGATATAA+AGG | - | chr7.1:33039867-33039886 | MS.gene84179:intron | 15.0% |
| !! | AAAAGGCAATAAATAAAAAG+TGG | + | chr7.1:33039664-33039683 | None:intergenic | 20.0% |
| !! | AAACAAGAATGATTTATGAT+TGG | + | chr7.1:33039508-33039527 | None:intergenic | 20.0% |
| !! | CACATAGAATTATTAATGAT+TGG | + | chr7.1:33039449-33039468 | None:intergenic | 20.0% |
| ! | AAAGGTAAAATGATAATTGG+TGG | - | chr7.1:33040108-33040127 | MS.gene84179:CDS | 25.0% |
| !! | TTTATATTGTGAGCTTTTCA+TGG | - | chr7.1:33039803-33039822 | MS.gene84179:intron | 25.0% |
| !!! | ATTGCCTTTTCAATTTGTTA+GGG | - | chr7.1:33039674-33039693 | MS.gene84179:intron | 25.0% |
| !!! | GTTAAACTTTTTTTTTGGAC+AGG | - | chr7.1:33039591-33039610 | MS.gene84179:intron | 25.0% |
| !!! | TATTGCCTTTTCAATTTGTT+AGG | - | chr7.1:33039673-33039692 | MS.gene84179:intron | 25.0% |
| AAATGGAAATTGTTGTCTCA+TGG | + | chr7.1:33039917-33039936 | None:intergenic | 30.0% | |
| AGAACTAGATCAAACTTTCA+TGG | - | chr7.1:33039253-33039272 | MS.gene84179:CDS | 30.0% | |
| AGTTATCTCTAACACTATGA+AGG | - | chr7.1:33039304-33039323 | MS.gene84179:CDS | 30.0% | |
| TATAAAGGGATGTGAAACAA+TGG | - | chr7.1:33039882-33039901 | MS.gene84179:intron | 30.0% | |
| TCTAACACTATGAAGGAAAA+GGG | - | chr7.1:33039311-33039330 | MS.gene84179:CDS | 30.0% | |
| TTTCTCTCTCATGAATCAAA+GGG | - | chr7.1:33039705-33039724 | MS.gene84179:intron | 30.0% | |
| ! | TAAGAAACTCCTTTGTTTCT+TGG | + | chr7.1:33039223-33039242 | None:intergenic | 30.0% |
| ! | TTTTCTCTCTCATGAATCAA+AGG | - | chr7.1:33039704-33039723 | MS.gene84179:intron | 30.0% |
| !! | AAGTTTGATCTAGTTCTGAA+CGG | + | chr7.1:33039250-33039269 | None:intergenic | 30.0% |
| !!! | TTCAAGCTATTTTTAGTGCA+AGG | - | chr7.1:33039947-33039966 | MS.gene84179:intron | 30.0% |
| !!! | TTGCCTTTTCAATTTGTTAG+GGG | - | chr7.1:33039675-33039694 | MS.gene84179:intron | 30.0% |
| AAACCTTGTTACTCGCTATA+AGG | - | chr7.1:33039373-33039392 | MS.gene84179:CDS | 35.0% | |
| AAACTTTCATGGAGACAAAG+AGG | - | chr7.1:33039264-33039283 | MS.gene84179:CDS | 35.0% | |
| AAAGAGGAACAAACAGCTTT+GGG | - | chr7.1:33039280-33039299 | MS.gene84179:CDS | 35.0% | |
| AAATGCAAATGGAAGCTCAA+TGG | - | chr7.1:33040193-33040212 | MS.gene84179:CDS | 35.0% | |
| AAGGATGCAAAGAATGCTAT+GGG | - | chr7.1:33039966-33039985 | MS.gene84179:intron | 35.0% | |
| AGAACAAAGAAGGATTAGAG+AGG | - | chr7.1:33040335-33040354 | MS.gene84179:CDS | 35.0% | |
| AGATTCTTGAGGAGTTTATG+AGG | - | chr7.1:33040166-33040185 | MS.gene84179:CDS | 35.0% | |
| CAACATGCTCATAACATCAT+AGG | - | chr7.1:33039146-33039165 | MS.gene84179:CDS | 35.0% | |
| CAATTTGAAGGAGATTCTTG+AGG | - | chr7.1:33040155-33040174 | MS.gene84179:CDS | 35.0% | |
| CTCTAACACTATGAAGGAAA+AGG | - | chr7.1:33039310-33039329 | MS.gene84179:CDS | 35.0% | |
| GCTTGAAGCTCATTGTAAAA+TGG | + | chr7.1:33039934-33039953 | None:intergenic | 35.0% | |
| GGTAAAATGATAATTGGTGG+AGG | - | chr7.1:33040111-33040130 | MS.gene84179:CDS | 35.0% | |
| TACCCCCTAACAAATTGAAA+AGG | + | chr7.1:33039681-33039700 | None:intergenic | 35.0% | |
| TAGTGGTAGCAACAATTTGA+AGG | - | chr7.1:33040143-33040162 | MS.gene84179:CDS | 35.0% | |
| TAGTGTTAACGTTGATGTCA+CGG | - | chr7.1:33039175-33039194 | MS.gene84179:CDS | 35.0% | |
| TATGAGGCAACAAATGCAAA+TGG | - | chr7.1:33040182-33040201 | MS.gene84179:CDS | 35.0% | |
| TTAGGCAATGAAGAAAGTGA+GGG | - | chr7.1:33040051-33040070 | MS.gene84179:intron | 35.0% | |
| ! | ATGGAGTATCCAAGAAACAA+AGG | - | chr7.1:33039211-33039230 | MS.gene84179:CDS | 35.0% |
| ! | GGTTAATGATGGAACAAAGA+TGG | - | chr7.1:33040301-33040320 | MS.gene84179:CDS | 35.0% |
| !! | GTTGATGTTGTTGATGATGT+TGG | + | chr7.1:33039073-33039092 | None:intergenic | 35.0% |
| !!! | TGCCTTTTCAATTTGTTAGG+GGG | - | chr7.1:33039676-33039695 | MS.gene84179:intron | 35.0% |
| AAGGAGGGTCAAAGAAGAAA+GGG | - | chr7.1:33039998-33040017 | MS.gene84179:intron | 40.0% | |
| AAGGATTAGAGAGGAAGCTA+GGG | - | chr7.1:33040344-33040363 | MS.gene84179:CDS | 40.0% | |
| AGAGAATGAGAGGAGATTGA+AGG | - | chr7.1:33040236-33040255 | MS.gene84179:CDS | 40.0% | |
| CAAAGAGGAACAAACAGCTT+TGG | - | chr7.1:33039279-33039298 | MS.gene84179:CDS | 40.0% | |
| CAAGGATGCAAAGAATGCTA+TGG | - | chr7.1:33039965-33039984 | MS.gene84179:intron | 40.0% | |
| GAGAAAGGGAAGAACAAAGA+AGG | - | chr7.1:33040325-33040344 | MS.gene84179:CDS | 40.0% | |
| GATGGAATGGAGACAAAGAA+TGG | - | chr7.1:33040260-33040279 | MS.gene84179:CDS | 40.0% | |
| GGAACAAAGATGGAGAGAAA+GGG | - | chr7.1:33040311-33040330 | MS.gene84179:CDS | 40.0% | |
| GGAGAATGAGAGGTTAATGA+TGG | - | chr7.1:33040290-33040309 | MS.gene84179:CDS | 40.0% | |
| GGTGGAGGAAATGATAATAG+TGG | - | chr7.1:33040126-33040145 | MS.gene84179:CDS | 40.0% | |
| GTACCTTATAGCGAGTAACA+AGG | + | chr7.1:33039379-33039398 | None:intergenic | 40.0% | |
| GTTAGGCAATGAAGAAAGTG+AGG | - | chr7.1:33040050-33040069 | MS.gene84179:intron | 40.0% | |
| GTTTCTTGGATACTCCATTG+AGG | + | chr7.1:33039209-33039228 | None:intergenic | 40.0% | |
| TCACGGATAGATTTCCTCAA+TGG | - | chr7.1:33039192-33039211 | MS.gene84179:CDS | 40.0% | |
| TCTGAGGATGAAGAAGAGTT+AGG | - | chr7.1:33040033-33040052 | MS.gene84179:intron | 40.0% | |
| TGGAACAAAGATGGAGAGAA+AGG | - | chr7.1:33040310-33040329 | MS.gene84179:CDS | 40.0% | |
| ! | GAGACAAAGAATGGAAGCAT+TGG | - | chr7.1:33040269-33040288 | MS.gene84179:CDS | 40.0% |
| !! | TCAATGGATGGAAGCATTTG+AGG | - | chr7.1:33040209-33040228 | MS.gene84179:CDS | 40.0% |
| AGAAAGTGAGGGAGATCACA+AGG | - | chr7.1:33040062-33040081 | MS.gene84179:intron | 45.0% | |
| AGGAGGGTCAAAGAAGAAAG+GGG | - | chr7.1:33039999-33040018 | MS.gene84179:intron | 45.0% | |
| GAAAGTGAGGGAGATCACAA+GGG | - | chr7.1:33040063-33040082 | MS.gene84179:intron | 45.0% | |
| GAAGGAGGGTCAAAGAAGAA+AGG | - | chr7.1:33039997-33040016 | MS.gene84179:intron | 45.0% | |
| GAAGGATTAGAGAGGAAGCT+AGG | - | chr7.1:33040343-33040362 | MS.gene84179:CDS | 45.0% | |
| GCAAATGGAAGCTCAATGGA+TGG | - | chr7.1:33040197-33040216 | MS.gene84179:CDS | 45.0% | |
| GGAGATTGAAGGAGATGGAA+TGG | - | chr7.1:33040247-33040266 | MS.gene84179:CDS | 45.0% | |
| TGAGAGGAGATTGAAGGAGA+TGG | - | chr7.1:33040242-33040261 | MS.gene84179:CDS | 45.0% | |
| TTGAGGCAAGAGAGAATGAG+AGG | - | chr7.1:33040226-33040245 | MS.gene84179:CDS | 45.0% | |
| !! | TGGAAGCATTGGAGAATGAG+AGG | - | chr7.1:33040280-33040299 | MS.gene84179:CDS | 45.0% |
| CAGAACAGTGCAAGTGCAAG+TGG | - | chr7.1:33039348-33039367 | MS.gene84179:CDS | 50.0% | |
| ! | AGGGGTGCATGTATCTTCTG+AGG | - | chr7.1:33040017-33040036 | MS.gene84179:intron | 50.0% |
| ! | ATGCTATGGGCTGAAGCAGA+AGG | - | chr7.1:33039979-33039998 | MS.gene84179:intron | 50.0% |
| ! | TATGGGCTGAAGCAGAAGGA+GGG | - | chr7.1:33039983-33040002 | MS.gene84179:intron | 50.0% |
| ! | CTATGGGCTGAAGCAGAAGG+AGG | - | chr7.1:33039982-33040001 | MS.gene84179:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 33039053 | 33040428 | 33039053 | ID=MS.gene84179 |
| chr7.1 | mRNA | 33039053 | 33040428 | 33039053 | ID=MS.gene84179.t1;Parent=MS.gene84179 |
| chr7.1 | exon | 33040087 | 33040428 | 33040087 | ID=MS.gene84179.t1.exon1;Parent=MS.gene84179.t1 |
| chr7.1 | CDS | 33040087 | 33040428 | 33040087 | ID=cds.MS.gene84179.t1;Parent=MS.gene84179.t1 |
| chr7.1 | exon | 33039053 | 33039592 | 33039053 | ID=MS.gene84179.t1.exon2;Parent=MS.gene84179.t1 |
| chr7.1 | CDS | 33039053 | 33039592 | 33039053 | ID=cds.MS.gene84179.t1;Parent=MS.gene84179.t1 |
| Gene Sequence |
| Protein sequence |
