Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71420.t1 | XP_003590829.1 | 97.1 | 276 | 8 | 0 | 1 | 276 | 1 | 276 | 1.00E-147 | 532.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71420.t1 | Q9LW57 | 58.1 | 267 | 106 | 1 | 10 | 276 | 24 | 284 | 1.6e-85 | 317.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71420.t1 | G7I4U4 | 97.1 | 276 | 8 | 0 | 1 | 276 | 1 | 276 | 7.2e-148 | 532.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene71420 | 0.895353 | 1.04E-75 | -1.69E-46 |
| MS.gene049222 | MS.gene71420 | 0.866118 | 3.60E-65 | -1.69E-46 |
| MS.gene049232 | MS.gene71420 | 0.865035 | 7.90E-65 | -1.69E-46 |
| MS.gene049285 | MS.gene71420 | 0.874293 | 7.56E-68 | -1.69E-46 |
| MS.gene049320 | MS.gene71420 | 0.867629 | 1.19E-65 | -1.69E-46 |
| MS.gene049609 | MS.gene71420 | 0.838801 | 2.32E-57 | -1.69E-46 |
| MS.gene049633 | MS.gene71420 | 0.884944 | 1.24E-71 | -1.69E-46 |
| MS.gene049657 | MS.gene71420 | 0.813099 | 3.04E-51 | -1.69E-46 |
| MS.gene049865 | MS.gene71420 | 0.830784 | 2.42E-55 | -1.69E-46 |
| MS.gene05010 | MS.gene71420 | 0.877351 | 6.74E-69 | -1.69E-46 |
| MS.gene050163 | MS.gene71420 | 0.808473 | 3.04E-50 | -1.69E-46 |
| MS.gene050165 | MS.gene71420 | 0.818349 | 2.05E-52 | -1.69E-46 |
| MS.gene050170 | MS.gene71420 | 0.945138 | 5.34E-104 | -1.69E-46 |
| MS.gene050216 | MS.gene71420 | 0.804293 | 2.32E-49 | -1.69E-46 |
| MS.gene050323 | MS.gene71420 | 0.923833 | 1.58E-89 | -1.69E-46 |
| MS.gene050333 | MS.gene71420 | 0.802104 | 6.57E-49 | -1.69E-46 |
| MS.gene050338 | MS.gene71420 | -0.823109 | 1.65E-53 | -1.69E-46 |
| MS.gene050444 | MS.gene71420 | 0.811563 | 6.58E-51 | -1.69E-46 |
| MS.gene050496 | MS.gene71420 | 0.896496 | 3.49E-76 | -1.69E-46 |
| MS.gene050502 | MS.gene71420 | 0.815945 | 7.13E-52 | -1.69E-46 |
| MS.gene050504 | MS.gene71420 | 0.87996 | 8.13E-70 | -1.69E-46 |
| MS.gene050518 | MS.gene71420 | 0.865909 | 4.19E-65 | -1.69E-46 |
| MS.gene050577 | MS.gene71420 | 0.889217 | 2.95E-73 | -1.69E-46 |
| MS.gene050612 | MS.gene71420 | 0.875539 | 2.84E-68 | -1.69E-46 |
| MS.gene050675 | MS.gene71420 | 0.843974 | 1.01E-58 | -1.69E-46 |
| MS.gene050697 | MS.gene71420 | 0.855582 | 5.73E-62 | -1.69E-46 |
| MS.gene050699 | MS.gene71420 | 0.864584 | 1.09E-64 | -1.69E-46 |
| MS.gene050747 | MS.gene71420 | 0.833496 | 5.16E-56 | -1.69E-46 |
| MS.gene050772 | MS.gene71420 | 0.85416 | 1.48E-61 | -1.69E-46 |
| MS.gene05080 | MS.gene71420 | 0.861168 | 1.24E-63 | -1.69E-46 |
| MS.gene05081 | MS.gene71420 | 0.843023 | 1.81E-58 | -1.69E-46 |
| MS.gene050868 | MS.gene71420 | 0.890319 | 1.10E-73 | -1.69E-46 |
| MS.gene050871 | MS.gene71420 | 0.886753 | 2.60E-72 | -1.69E-46 |
| MS.gene050876 | MS.gene71420 | 0.823127 | 1.64E-53 | -1.69E-46 |
| MS.gene050904 | MS.gene71420 | 0.883867 | 3.12E-71 | -1.69E-46 |
| MS.gene050950 | MS.gene71420 | 0.832932 | 7.13E-56 | -1.69E-46 |
| MS.gene050986 | MS.gene71420 | 0.856424 | 3.25E-62 | -1.69E-46 |
| MS.gene051268 | MS.gene71420 | 0.847908 | 8.59E-60 | -1.69E-46 |
| MS.gene051317 | MS.gene71420 | 0.899009 | 3.03E-77 | -1.69E-46 |
| MS.gene051551 | MS.gene71420 | 0.84793 | 8.47E-60 | -1.69E-46 |
| MS.gene051651 | MS.gene71420 | -0.846139 | 2.62E-59 | -1.69E-46 |
| MS.gene051838 | MS.gene71420 | 0.872814 | 2.38E-67 | -1.69E-46 |
| MS.gene051941 | MS.gene71420 | 0.820863 | 5.48E-53 | -1.69E-46 |
| MS.gene052066 | MS.gene71420 | 0.8349 | 2.29E-56 | -1.69E-46 |
| MS.gene052164 | MS.gene71420 | 0.846573 | 2.00E-59 | -1.69E-46 |
| MS.gene052482 | MS.gene71420 | 0.888497 | 5.60E-73 | -1.69E-46 |
| MS.gene052486 | MS.gene71420 | 0.883162 | 5.67E-71 | -1.69E-46 |
| MS.gene052494 | MS.gene71420 | -0.808423 | 3.12E-50 | -1.69E-46 |
| MS.gene052501 | MS.gene71420 | 0.800995 | 1.11E-48 | -1.69E-46 |
| MS.gene052503 | MS.gene71420 | 0.878019 | 3.94E-69 | -1.69E-46 |
| MS.gene052504 | MS.gene71420 | 0.83962 | 1.42E-57 | -1.69E-46 |
| MS.gene052506 | MS.gene71420 | 0.872745 | 2.51E-67 | -1.69E-46 |
| MS.gene052615 | MS.gene71420 | 0.815656 | 8.27E-52 | -1.69E-46 |
| MS.gene052820 | MS.gene71420 | 0.813216 | 2.86E-51 | -1.69E-46 |
| MS.gene052822 | MS.gene71420 | 0.880978 | 3.51E-70 | -1.69E-46 |
| MS.gene052823 | MS.gene71420 | 0.878814 | 2.07E-69 | -1.69E-46 |
| MS.gene052825 | MS.gene71420 | 0.876902 | 9.65E-69 | -1.69E-46 |
| MS.gene052870 | MS.gene71420 | 0.81284 | 3.46E-51 | -1.69E-46 |
| MS.gene052872 | MS.gene71420 | 0.829066 | 6.34E-55 | -1.69E-46 |
| MS.gene052966 | MS.gene71420 | 0.846349 | 2.30E-59 | -1.69E-46 |
| MS.gene052986 | MS.gene71420 | 0.82408 | 9.80E-54 | -1.69E-46 |
| MS.gene052987 | MS.gene71420 | 0.828996 | 6.59E-55 | -1.69E-46 |
| MS.gene053117 | MS.gene71420 | 0.833626 | 4.79E-56 | -1.69E-46 |
| MS.gene053203 | MS.gene71420 | 0.868488 | 6.29E-66 | -1.69E-46 |
| MS.gene053213 | MS.gene71420 | 0.830341 | 3.10E-55 | -1.69E-46 |
| MS.gene053286 | MS.gene71420 | 0.832627 | 8.49E-56 | -1.69E-46 |
| MS.gene053420 | MS.gene71420 | -0.803875 | 2.83E-49 | -1.69E-46 |
| MS.gene053421 | MS.gene71420 | -0.813847 | 2.08E-51 | -1.69E-46 |
| MS.gene053436 | MS.gene71420 | 0.826213 | 3.07E-54 | -1.69E-46 |
| MS.gene053479 | MS.gene71420 | 0.871767 | 5.32E-67 | -1.69E-46 |
| MS.gene053480 | MS.gene71420 | 0.888911 | 3.88E-73 | -1.69E-46 |
| MS.gene053574 | MS.gene71420 | 0.851612 | 7.92E-61 | -1.69E-46 |
| MS.gene053626 | MS.gene71420 | 0.828828 | 7.23E-55 | -1.69E-46 |
| MS.gene053632 | MS.gene71420 | 0.808996 | 2.35E-50 | -1.69E-46 |
| MS.gene053633 | MS.gene71420 | 0.862175 | 6.10E-64 | -1.69E-46 |
| MS.gene053824 | MS.gene71420 | 0.889767 | 1.80E-73 | -1.69E-46 |
| MS.gene053916 | MS.gene71420 | 0.826216 | 3.06E-54 | -1.69E-46 |
| MS.gene054003 | MS.gene71420 | 0.810867 | 9.31E-51 | -1.69E-46 |
| MS.gene054270 | MS.gene71420 | -0.813 | 3.19E-51 | -1.69E-46 |
| MS.gene054344 | MS.gene71420 | 0.844479 | 7.37E-59 | -1.69E-46 |
| MS.gene054408 | MS.gene71420 | 0.82565 | 4.18E-54 | -1.69E-46 |
| MS.gene054595 | MS.gene71420 | 0.855258 | 7.12E-62 | -1.69E-46 |
| MS.gene054600 | MS.gene71420 | 0.824876 | 6.36E-54 | -1.69E-46 |
| MS.gene054614 | MS.gene71420 | -0.801717 | 7.89E-49 | -1.69E-46 |
| MS.gene054642 | MS.gene71420 | 0.830843 | 2.34E-55 | -1.69E-46 |
| MS.gene054706 | MS.gene71420 | -0.839058 | 1.99E-57 | -1.69E-46 |
| MS.gene05470 | MS.gene71420 | 0.896052 | 5.34E-76 | -1.69E-46 |
| MS.gene054851 | MS.gene71420 | -0.825615 | 4.26E-54 | -1.69E-46 |
| MS.gene054941 | MS.gene71420 | -0.801415 | 9.10E-49 | -1.69E-46 |
| MS.gene05494 | MS.gene71420 | 0.812667 | 3.78E-51 | -1.69E-46 |
| MS.gene054954 | MS.gene71420 | 0.892543 | 1.44E-74 | -1.69E-46 |
| MS.gene054999 | MS.gene71420 | -0.806637 | 7.47E-50 | -1.69E-46 |
| MS.gene055206 | MS.gene71420 | 0.817861 | 2.65E-52 | -1.69E-46 |
| MS.gene055224 | MS.gene71420 | 0.844453 | 7.49E-59 | -1.69E-46 |
| MS.gene055251 | MS.gene71420 | -0.842306 | 2.80E-58 | -1.69E-46 |
| MS.gene055362 | MS.gene71420 | 0.859671 | 3.52E-63 | -1.69E-46 |
| MS.gene055502 | MS.gene71420 | 0.885466 | 7.94E-72 | -1.69E-46 |
| MS.gene055577 | MS.gene71420 | 0.862122 | 6.34E-64 | -1.69E-46 |
| MS.gene055748 | MS.gene71420 | 0.879365 | 1.32E-69 | -1.69E-46 |
| MS.gene055750 | MS.gene71420 | 0.881275 | 2.75E-70 | -1.69E-46 |
| MS.gene055751 | MS.gene71420 | 0.888486 | 5.66E-73 | -1.69E-46 |
| MS.gene055776 | MS.gene71420 | 0.867487 | 1.32E-65 | -1.69E-46 |
| MS.gene055849 | MS.gene71420 | 0.825871 | 3.70E-54 | -1.69E-46 |
| MS.gene05589 | MS.gene71420 | 0.925886 | 9.98E-91 | -1.69E-46 |
| MS.gene055941 | MS.gene71420 | 0.830611 | 2.66E-55 | -1.69E-46 |
| MS.gene056046 | MS.gene71420 | 0.867907 | 9.68E-66 | -1.69E-46 |
| MS.gene056166 | MS.gene71420 | 0.814763 | 1.31E-51 | -1.69E-46 |
| MS.gene056266 | MS.gene71420 | 0.834798 | 2.43E-56 | -1.69E-46 |
| MS.gene056387 | MS.gene71420 | 0.887758 | 1.08E-72 | -1.69E-46 |
| MS.gene056446 | MS.gene71420 | 0.830026 | 3.70E-55 | -1.69E-46 |
| MS.gene056487 | MS.gene71420 | 0.800598 | 1.34E-48 | -1.69E-46 |
| MS.gene056504 | MS.gene71420 | 0.93122 | 5.21E-94 | -1.69E-46 |
| MS.gene056510 | MS.gene71420 | 0.882276 | 1.19E-70 | -1.69E-46 |
| MS.gene056583 | MS.gene71420 | -0.816873 | 4.42E-52 | -1.69E-46 |
| MS.gene056618 | MS.gene71420 | -0.875611 | 2.69E-68 | -1.69E-46 |
| MS.gene056657 | MS.gene71420 | 0.862085 | 6.50E-64 | -1.69E-46 |
| MS.gene056692 | MS.gene71420 | 0.850198 | 1.98E-60 | -1.69E-46 |
| MS.gene056694 | MS.gene71420 | -0.816382 | 5.69E-52 | -1.69E-46 |
| MS.gene056878 | MS.gene71420 | 0.811607 | 6.43E-51 | -1.69E-46 |
| MS.gene056898 | MS.gene71420 | 0.846821 | 1.71E-59 | -1.69E-46 |
| MS.gene057076 | MS.gene71420 | 0.836928 | 7.02E-57 | -1.69E-46 |
| MS.gene057086 | MS.gene71420 | 0.827908 | 1.21E-54 | -1.69E-46 |
| MS.gene057367 | MS.gene71420 | -0.807169 | 5.76E-50 | -1.69E-46 |
| MS.gene057416 | MS.gene71420 | 0.808083 | 3.69E-50 | -1.69E-46 |
| MS.gene057658 | MS.gene71420 | 0.83195 | 1.25E-55 | -1.69E-46 |
| MS.gene057831 | MS.gene71420 | 0.84041 | 8.84E-58 | -1.69E-46 |
| MS.gene057857 | MS.gene71420 | 0.819839 | 9.41E-53 | -1.69E-46 |
| MS.gene057872 | MS.gene71420 | 0.802827 | 4.66E-49 | -1.69E-46 |
| MS.gene05787 | MS.gene71420 | 0.856513 | 3.06E-62 | -1.69E-46 |
| MS.gene058157 | MS.gene71420 | 0.821342 | 4.25E-53 | -1.69E-46 |
| MS.gene058334 | MS.gene71420 | -0.866176 | 3.45E-65 | -1.69E-46 |
| MS.gene058338 | MS.gene71420 | 0.850787 | 1.35E-60 | -1.69E-46 |
| MS.gene05837 | MS.gene71420 | 0.866468 | 2.79E-65 | -1.69E-46 |
| MS.gene058382 | MS.gene71420 | -0.862061 | 6.61E-64 | -1.69E-46 |
| MS.gene058419 | MS.gene71420 | 0.880469 | 5.35E-70 | -1.69E-46 |
| MS.gene058544 | MS.gene71420 | 0.854107 | 1.53E-61 | -1.69E-46 |
| MS.gene058719 | MS.gene71420 | 0.803167 | 3.97E-49 | -1.69E-46 |
| MS.gene058773 | MS.gene71420 | 0.839222 | 1.80E-57 | -1.69E-46 |
| MS.gene058838 | MS.gene71420 | 0.876142 | 1.77E-68 | -1.69E-46 |
| MS.gene059022 | MS.gene71420 | 0.865183 | 7.10E-65 | -1.69E-46 |
| MS.gene059023 | MS.gene71420 | 0.894905 | 1.59E-75 | -1.69E-46 |
| MS.gene05912 | MS.gene71420 | 0.803942 | 2.74E-49 | -1.69E-46 |
| MS.gene05913 | MS.gene71420 | 0.82611 | 3.25E-54 | -1.69E-46 |
| MS.gene05914 | MS.gene71420 | 0.818513 | 1.88E-52 | -1.69E-46 |
| MS.gene05926 | MS.gene71420 | -0.813984 | 1.94E-51 | -1.69E-46 |
| MS.gene05934 | MS.gene71420 | 0.803492 | 3.40E-49 | -1.69E-46 |
| MS.gene059667 | MS.gene71420 | 0.883978 | 2.84E-71 | -1.69E-46 |
| MS.gene059677 | MS.gene71420 | 0.872974 | 2.11E-67 | -1.69E-46 |
| MS.gene059699 | MS.gene71420 | -0.800045 | 1.73E-48 | -1.69E-46 |
| MS.gene059703 | MS.gene71420 | -0.818176 | 2.25E-52 | -1.69E-46 |
| MS.gene059718 | MS.gene71420 | 0.840669 | 7.57E-58 | -1.69E-46 |
| MS.gene059756 | MS.gene71420 | 0.84644 | 2.17E-59 | -1.69E-46 |
| MS.gene059801 | MS.gene71420 | 0.806794 | 6.92E-50 | -1.69E-46 |
| MS.gene059837 | MS.gene71420 | 0.875488 | 2.96E-68 | -1.69E-46 |
| MS.gene059865 | MS.gene71420 | 0.899486 | 1.89E-77 | -1.69E-46 |
| MS.gene05995 | MS.gene71420 | 0.828628 | 8.09E-55 | -1.69E-46 |
| MS.gene05996 | MS.gene71420 | 0.838793 | 2.33E-57 | -1.69E-46 |
| MS.gene06000 | MS.gene71420 | 0.898492 | 5.03E-77 | -1.69E-46 |
| MS.gene06027 | MS.gene71420 | 0.833289 | 5.81E-56 | -1.69E-46 |
| MS.gene06042 | MS.gene71420 | -0.812743 | 3.64E-51 | -1.69E-46 |
| MS.gene060595 | MS.gene71420 | -0.844921 | 5.60E-59 | -1.69E-46 |
| MS.gene060703 | MS.gene71420 | 0.854365 | 1.29E-61 | -1.69E-46 |
| MS.gene060762 | MS.gene71420 | 0.87753 | 5.84E-69 | -1.69E-46 |
| MS.gene060778 | MS.gene71420 | 0.883255 | 5.24E-71 | -1.69E-46 |
| MS.gene06077 | MS.gene71420 | 0.891587 | 3.47E-74 | -1.69E-46 |
| MS.gene060823 | MS.gene71420 | -0.829594 | 4.72E-55 | -1.69E-46 |
| MS.gene060835 | MS.gene71420 | 0.805786 | 1.13E-49 | -1.69E-46 |
| MS.gene06092 | MS.gene71420 | 0.824562 | 7.55E-54 | -1.69E-46 |
| MS.gene06097 | MS.gene71420 | 0.840933 | 6.45E-58 | -1.69E-46 |
| MS.gene060982 | MS.gene71420 | 0.926591 | 3.80E-91 | -1.69E-46 |
| MS.gene061044 | MS.gene71420 | -0.859048 | 5.42E-63 | -1.69E-46 |
| MS.gene061150 | MS.gene71420 | 0.81969 | 1.02E-52 | -1.69E-46 |
| MS.gene061218 | MS.gene71420 | 0.810561 | 1.08E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71420.t1 | MTR_1g075660 | 97.101 | 276 | 8 | 0 | 1 | 276 | 1 | 276 | 0.0 | 541 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71420.t1 | AT3G23400 | 58.427 | 267 | 105 | 1 | 10 | 276 | 24 | 284 | 4.84e-104 | 304 |
| MS.gene71420.t1 | AT3G23400 | 77.119 | 118 | 27 | 0 | 89 | 206 | 97 | 214 | 1.42e-63 | 199 |
| MS.gene71420.t1 | AT3G23400 | 47.436 | 156 | 76 | 1 | 10 | 165 | 24 | 173 | 1.06e-34 | 124 |
| MS.gene71420.t1 | AT3G23400 | 47.436 | 156 | 76 | 1 | 10 | 165 | 24 | 173 | 1.06e-34 | 124 |
Find 86 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCCTTGAAGTTCAATCTTC+TGG | 0.182887 | 1.3:+54227144 | MS.gene71420:CDS |
| CAGCAGCAGCTTTCACAATA+AGG | 0.227641 | 1.3:-54227060 | None:intergenic |
| CAGACCTGTCCAAGAGTTAT+AGG | 0.304929 | 1.3:-54228278 | None:intergenic |
| ATGCTGCAGAGTGCTGTTGC+TGG | 0.321754 | 1.3:+54228050 | MS.gene71420:intron |
| CTTGTTCTTGTTTCTTTCCC+AGG | 0.337264 | 1.3:+54226984 | MS.gene71420:CDS |
| TCAAAAGGATTAGAAGGAAT+TGG | 0.350636 | 1.3:-54227112 | None:intergenic |
| GGCTTAATATGTTTACCCTT+TGG | 0.357584 | 1.3:-54227031 | None:intergenic |
| GTAGAATCAAAAGGATTAGA+AGG | 0.359007 | 1.3:-54227118 | None:intergenic |
| AAGAAGTAGAAAATGGTAGT+AGG | 0.359127 | 1.3:-54226964 | None:intergenic |
| CAAGAACAAGAAGTAGAAAA+TGG | 0.362005 | 1.3:-54226971 | None:intergenic |
| AGCAGCAGCTTTCACAATAA+GGG | 0.381281 | 1.3:-54227059 | None:intergenic |
| GAGAAGTTGAGGGGTGAAGA+AGG | 0.382924 | 1.3:-54226931 | None:intergenic |
| ATCTTCCTTGCAACTTATCA+AGG | 0.390696 | 1.3:-54228175 | None:intergenic |
| CTAATGTGGCAGTTACTTCA+AGG | 0.421507 | 1.3:-54228582 | None:intergenic |
| AGAAGTAGAAAATGGTAGTA+GGG | 0.421680 | 1.3:-54226963 | None:intergenic |
| AGCCTTCCTGTGGGAGGTCC+AGG | 0.424885 | 1.3:-54228251 | None:intergenic |
| AACATTGATGTTGTTGCTCC+TGG | 0.427750 | 1.3:-54227002 | None:intergenic |
| CTCAATGCATCTGGAATTTG+AGG | 0.437203 | 1.3:-54228852 | None:intergenic |
| AAAACCACAGTGAAGACAAC+CGG | 0.437328 | 1.3:+54228798 | MS.gene71420:CDS |
| ACTCTAGGTGGGAGCCGTCC+TGG | 0.438721 | 1.3:+54228233 | MS.gene71420:CDS |
| AGGGGTGAAGAAGGAGATTG+AGG | 0.439438 | 1.3:-54226922 | None:intergenic |
| TGCTGCAGAGTGCTGTTGCT+GGG | 0.444702 | 1.3:+54228051 | MS.gene71420:intron |
| GATTGTGGCCTCAATGCATC+TGG | 0.448068 | 1.3:-54228861 | None:intergenic |
| AGGCTCCTTCCTATAACTCT+TGG | 0.456747 | 1.3:+54228269 | MS.gene71420:CDS |
| ACCTTCAGTTGGGTGCTCCA+TGG | 0.457796 | 1.3:+54228548 | MS.gene71420:CDS |
| GAGGAGATAGAGGCGAGCTA+AGG | 0.461380 | 1.3:+54228943 | MS.gene71420:CDS |
| CTCAAATTTGTGAGCTAATG+TGG | 0.469198 | 1.3:-54228596 | None:intergenic |
| GGGTGAGAGAGAGAAGTTGA+GGG | 0.469372 | 1.3:-54226941 | None:intergenic |
| ATCAATGTTCTTACTCCAAA+GGG | 0.471955 | 1.3:+54227016 | MS.gene71420:CDS |
| AAAGGCAGATGCTGCGGCTA+AGG | 0.475842 | 1.3:+54228112 | MS.gene71420:CDS |
| GGGGTGAAGAAGGAGATTGA+GGG | 0.481429 | 1.3:-54226921 | None:intergenic |
| GAAGCTGATATTTCAATCTC+TGG | 0.485146 | 1.3:+54227082 | MS.gene71420:CDS |
| TTGATAAGTTGCAAGGAAGA+TGG | 0.492943 | 1.3:+54228177 | MS.gene71420:CDS |
| CTCAAATTCCAGATGCATTG+AGG | 0.496761 | 1.3:+54228853 | MS.gene71420:CDS |
| GTTACTTCAAGGGGCGGTAG+AGG | 0.502869 | 1.3:-54228571 | None:intergenic |
| GCTAAGGAACTTGAAGAAGC+TGG | 0.503259 | 1.3:+54228128 | MS.gene71420:CDS |
| AGGAGATAGAGGCGAGCTAA+GGG | 0.505818 | 1.3:+54228944 | MS.gene71420:CDS |
| GCTTTCACAATAAGGGATGA+AGG | 0.507075 | 1.3:-54227052 | None:intergenic |
| GCGTTCTCCTCTCGTACTCT+AGG | 0.509013 | 1.3:+54228218 | MS.gene71420:CDS |
| TAATATAGTGGACCTTCAGT+TGG | 0.514528 | 1.3:+54228537 | MS.gene71420:CDS |
| TCAAGGGGCGGTAGAGGCCA+TGG | 0.516112 | 1.3:-54228565 | None:intergenic |
| GACCAGAAGATTGAACTTCA+AGG | 0.517749 | 1.3:-54227146 | None:intergenic |
| CTCTATCTCCTCTTGTGACG+CGG | 0.521642 | 1.3:-54228932 | None:intergenic |
| CCACAATCTAATAGAGGAAG+TGG | 0.521959 | 1.3:+54228876 | MS.gene71420:CDS |
| CCTTCCTATAACTCTTGGAC+AGG | 0.529460 | 1.3:+54228274 | MS.gene71420:CDS |
| AATATAGTGGACCTTCAGTT+GGG | 0.531782 | 1.3:+54228538 | MS.gene71420:CDS |
| GGGGTGAGAGAGAGAAGTTG+AGG | 0.537948 | 1.3:-54226942 | None:intergenic |
| TCTATCTCCTCTTGTGACGC+GGG | 0.542130 | 1.3:-54228931 | None:intergenic |
| CATCAATGTTCTTACTCCAA+AGG | 0.543730 | 1.3:+54227015 | MS.gene71420:CDS |
| ACCAGAAGATTGAACTTCAA+GGG | 0.545837 | 1.3:-54227145 | None:intergenic |
| TTCTCCTCTCGTACTCTAGG+TGG | 0.547834 | 1.3:+54228221 | MS.gene71420:CDS |
| TTGAGGCCACAATCTAATAG+AGG | 0.552114 | 1.3:+54228870 | MS.gene71420:CDS |
| GAAGTAGAAAATGGTAGTAG+GGG | 0.556342 | 1.3:-54226962 | None:intergenic |
| CCACTTCCTCTATTAGATTG+TGG | 0.557605 | 1.3:-54228876 | None:intergenic |
| AGCCGTCCTGGACCTCCCAC+AGG | 0.562196 | 1.3:+54228245 | MS.gene71420:CDS |
| TCTCCTCTCGTACTCTAGGT+GGG | 0.571585 | 1.3:+54228222 | MS.gene71420:CDS |
| CGGCAACTGTGAAAATGTCC+CGG | 0.576615 | 1.3:-54228817 | None:intergenic |
| GCCATGGAGCACCCAACTGA+AGG | 0.577155 | 1.3:-54228549 | None:intergenic |
| GCTGATACCCGCGTCACAAG+AGG | 0.583547 | 1.3:+54228924 | MS.gene71420:CDS |
| GACAACCTTGATAAGTTGCA+AGG | 0.586490 | 1.3:+54228170 | MS.gene71420:CDS |
| AAATGAAGAAGACCTACAAA+AGG | 0.586772 | 1.3:+54228094 | MS.gene71420:CDS |
| TAATGTGGCAGTTACTTCAA+GGG | 0.589545 | 1.3:-54228581 | None:intergenic |
| AAACCACAGTGAAGACAACC+GGG | 0.596707 | 1.3:+54228799 | MS.gene71420:CDS |
| GCTCACAAATTTGAGCTCGT+AGG | 0.603423 | 1.3:+54228604 | MS.gene71420:CDS |
| GCTGTTGCTGGGCTAAATAG+AGG | 0.605133 | 1.3:+54228062 | MS.gene71420:CDS |
| CCTGTCCAAGAGTTATAGGA+AGG | 0.608009 | 1.3:-54228274 | None:intergenic |
| ACATTGATGTTGTTGCTCCT+GGG | 0.612390 | 1.3:-54227001 | None:intergenic |
| TATAGGAAGGAGCCTTCCTG+TGG | 0.615801 | 1.3:-54228261 | None:intergenic |
| GTCCTGGACCTCCCACAGGA+AGG | 0.617086 | 1.3:+54228249 | MS.gene71420:CDS |
| CCAGAAGATTGAACTTCAAG+GGG | 0.618887 | 1.3:-54227144 | None:intergenic |
| CCTACAAAAGGCAGATGCTG+CGG | 0.625367 | 1.3:+54228106 | MS.gene71420:CDS |
| CGCGTCACAAGAGGAGATAG+AGG | 0.626459 | 1.3:+54228933 | MS.gene71420:CDS |
| ACTTATCAAGGTTGTCTGTG+AGG | 0.627193 | 1.3:-54228163 | None:intergenic |
| TTCCTGTGGGAGGTCCAGGA+CGG | 0.631302 | 1.3:-54228247 | None:intergenic |
| AAGTAGAAAATGGTAGTAGG+GGG | 0.633244 | 1.3:-54226961 | None:intergenic |
| GGTGAGAGAGAGAAGTTGAG+GGG | 0.635373 | 1.3:-54226940 | None:intergenic |
| AATGTGGCAGTTACTTCAAG+GGG | 0.642001 | 1.3:-54228580 | None:intergenic |
| GGAATTTGAGGCAAATCTAG+AGG | 0.645956 | 1.3:-54228840 | None:intergenic |
| GGAAGGAGCCTTCCTGTGGG+AGG | 0.648424 | 1.3:-54228257 | None:intergenic |
| GCTCCCACCTAGAGTACGAG+AGG | 0.667203 | 1.3:-54228225 | None:intergenic |
| GTGGCAGTTACTTCAAGGGG+CGG | 0.672835 | 1.3:-54228577 | None:intergenic |
| ATAGGAAGGAGCCTTCCTGT+GGG | 0.683855 | 1.3:-54228260 | None:intergenic |
| ATTTGAGGCAAATCTAGAGG+CGG | 0.686437 | 1.3:-54228837 | None:intergenic |
| AAGGAACTTGAAGAAGCTGG+AGG | 0.698611 | 1.3:+54228131 | MS.gene71420:CDS |
| TGTCCCGGTTGTCTTCACTG+TGG | 0.714687 | 1.3:-54228802 | None:intergenic |
| CAGAAGATTGAACTTCAAGG+GGG | 0.762152 | 1.3:-54227143 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATATATAGATATAGTAT+AGG | + | chr1.3:54227360-54227379 | MS.gene71420:intron | 10.0% |
| !! | ATAATTGCATAATAAAAATA+GGG | + | chr1.3:54227304-54227323 | MS.gene71420:intron | 10.0% |
| !! | ATTGTCATTAAAATATATTT+AGG | + | chr1.3:54227447-54227466 | MS.gene71420:intron | 10.0% |
| !! | TATAAGTATTTATCATATAA+GGG | + | chr1.3:54227713-54227732 | MS.gene71420:intron | 10.0% |
| !! | TATAATTGCATAATAAAAAT+AGG | + | chr1.3:54227303-54227322 | MS.gene71420:intron | 10.0% |
| !! | GTATAAGTATTTATCATATA+AGG | + | chr1.3:54227712-54227731 | MS.gene71420:intron | 15.0% |
| !! | TAATTGCATAATAAAAATAG+GGG | + | chr1.3:54227305-54227324 | MS.gene71420:intron | 15.0% |
| !!! | AAATTATGTTTTAGTCATTT+CGG | + | chr1.3:54228390-54228409 | MS.gene71420:intron | 15.0% |
| !!! | TATATATTTTTGTTTTGCAA+AGG | - | chr1.3:54227350-54227369 | None:intergenic | 15.0% |
| !! | ATAAACATATTATTGAACAG+CGG | - | chr1.3:54228444-54228463 | None:intergenic | 20.0% |
| !! | GATTATGTATAAGTTGTAAA+CGG | + | chr1.3:54227735-54227754 | MS.gene71420:intron | 20.0% |
| !! | TGGATAAATAACTTGATTTA+GGG | + | chr1.3:54227477-54227496 | MS.gene71420:intron | 20.0% |
| !!! | AATAAGTTGAAAACAACTTA+TGG | + | chr1.3:54227806-54227825 | MS.gene71420:intron | 20.0% |
| !!! | CAAAGATTTTGATAATATAG+TGG | + | chr1.3:54228525-54228544 | MS.gene71420:CDS | 20.0% |
| !!! | CTTTTGTTTGACAAATTAAA+TGG | + | chr1.3:54227224-54227243 | MS.gene71420:intron | 20.0% |
| ! | AAAATAGGGGAAATAGTTAT+AGG | + | chr1.3:54227318-54227337 | MS.gene71420:intron | 25.0% |
| ! | AAATCAAGTTATTTATCCAG+AGG | - | chr1.3:54227476-54227495 | None:intergenic | 25.0% |
| ! | AATCAAGTTATTTATCCAGA+GGG | - | chr1.3:54227475-54227494 | None:intergenic | 25.0% |
| ! | CTGGATAAATAACTTGATTT+AGG | + | chr1.3:54227476-54227495 | MS.gene71420:intron | 25.0% |
| ! | TAGATTATACGAAAACAGTT+TGG | + | chr1.3:54227590-54227609 | MS.gene71420:intron | 25.0% |
| !! | ACTTGAGTATCTAAGTTTTA+TGG | + | chr1.3:54227406-54227425 | MS.gene71420:intron | 25.0% |
| !!! | ACTGTTTTGTTTTTGCTATT+AGG | + | chr1.3:54228477-54228496 | MS.gene71420:intron | 25.0% |
| AAATGAAGAAGACCTACAAA+AGG | + | chr1.3:54228094-54228113 | MS.gene71420:CDS | 30.0% | |
| AAGAAGTAGAAAATGGTAGT+AGG | - | chr1.3:54226967-54226986 | None:intergenic | 30.0% | |
| AGAAGTAGAAAATGGTAGTA+GGG | - | chr1.3:54226966-54226985 | None:intergenic | 30.0% | |
| AGCATATCTACTTACTGTAT+CGG | - | chr1.3:54227861-54227880 | None:intergenic | 30.0% | |
| ATCAAGTTATTTATCCAGAG+GGG | - | chr1.3:54227474-54227493 | None:intergenic | 30.0% | |
| ATCAATGTTCTTACTCCAAA+GGG | + | chr1.3:54227016-54227035 | MS.gene71420:CDS | 30.0% | |
| CAAGAACAAGAAGTAGAAAA+TGG | - | chr1.3:54226974-54226993 | None:intergenic | 30.0% | |
| GTAGAATCAAAAGGATTAGA+AGG | - | chr1.3:54227121-54227140 | None:intergenic | 30.0% | |
| TCAAAAGGATTAGAAGGAAT+TGG | - | chr1.3:54227115-54227134 | None:intergenic | 30.0% | |
| TTAGTGCACATCATTATATC+AGG | - | chr1.3:54228314-54228333 | None:intergenic | 30.0% | |
| TTGTTCATAACTATCTTTCC+TGG | + | chr1.3:54228334-54228353 | MS.gene71420:intron | 30.0% | |
| ! | AACTTGATTTAGGGTTTGTT+TGG | + | chr1.3:54227486-54227505 | MS.gene71420:intron | 30.0% |
| ! | AATCACTTGCTACACTATTT+GGG | + | chr1.3:54227546-54227565 | MS.gene71420:intron | 30.0% |
| ! | ATATTATTGAACAGCGGTTT+TGG | - | chr1.3:54228438-54228457 | None:intergenic | 30.0% |
| ! | TAATCACTTGCTACACTATT+TGG | + | chr1.3:54227545-54227564 | MS.gene71420:intron | 30.0% |
| ! | TTTAGGGTTTGTTTGGAATT+TGG | + | chr1.3:54227493-54227512 | MS.gene71420:intron | 30.0% |
| !!! | CATTGATTTGGATTTTGGAA+TGG | + | chr1.3:54227942-54227961 | MS.gene71420:intron | 30.0% |
| !!! | TGACACATTGATTTGGATTT+TGG | + | chr1.3:54227937-54227956 | MS.gene71420:intron | 30.0% |
| AACCCTTACACAACTACATA+AGG | + | chr1.3:54227901-54227920 | MS.gene71420:intron | 35.0% | |
| AACTAATCATGCACTCAACA+TGG | - | chr1.3:54227281-54227300 | None:intergenic | 35.0% | |
| AAGTAGAAAATGGTAGTAGG+GGG | - | chr1.3:54226964-54226983 | None:intergenic | 35.0% | |
| ACCAGAAGATTGAACTTCAA+GGG | - | chr1.3:54227148-54227167 | None:intergenic | 35.0% | |
| ACTAATCATGCACTCAACAT+GGG | - | chr1.3:54227280-54227299 | None:intergenic | 35.0% | |
| ACTGCTTTCATAAGCTATCT+CGG | + | chr1.3:54227771-54227790 | MS.gene71420:intron | 35.0% | |
| ACTTGTTTGAGCTTATCTAC+TGG | + | chr1.3:54227520-54227539 | MS.gene71420:intron | 35.0% | |
| ATAAGTTGTAAACGGTCTCA+CGG | + | chr1.3:54227743-54227762 | MS.gene71420:intron | 35.0% | |
| ATCTTCCTTGCAACTTATCA+AGG | - | chr1.3:54228178-54228197 | None:intergenic | 35.0% | |
| CAACTTATGGACATGTCATA+AGG | + | chr1.3:54227819-54227838 | MS.gene71420:intron | 35.0% | |
| CATCAATGTTCTTACTCCAA+AGG | + | chr1.3:54227015-54227034 | MS.gene71420:CDS | 35.0% | |
| CTCAAATTTGTGAGCTAATG+TGG | - | chr1.3:54228599-54228618 | None:intergenic | 35.0% | |
| GAAGCTGATATTTCAATCTC+TGG | + | chr1.3:54227082-54227101 | MS.gene71420:CDS | 35.0% | |
| GAAGTAGAAAATGGTAGTAG+GGG | - | chr1.3:54226965-54226984 | None:intergenic | 35.0% | |
| GGCTTAATATGTTTACCCTT+TGG | - | chr1.3:54227034-54227053 | None:intergenic | 35.0% | |
| TAATGTGGCAGTTACTTCAA+GGG | - | chr1.3:54228584-54228603 | None:intergenic | 35.0% | |
| TCAAGTTATTTATCCAGAGG+GGG | - | chr1.3:54227473-54227492 | None:intergenic | 35.0% | |
| TGCCTTATGTAGTTGTGTAA+GGG | - | chr1.3:54227906-54227925 | None:intergenic | 35.0% | |
| TGCTTTCTACTGCATATACA+TGG | + | chr1.3:54228636-54228655 | MS.gene71420:intron | 35.0% | |
| TTACTGTATCGGAGAGTTTA+TGG | - | chr1.3:54227850-54227869 | None:intergenic | 35.0% | |
| TTGATAAGTTGCAAGGAAGA+TGG | + | chr1.3:54228177-54228196 | MS.gene71420:CDS | 35.0% | |
| TTGCCTTATGTAGTTGTGTA+AGG | - | chr1.3:54227907-54227926 | None:intergenic | 35.0% | |
| TTGGGATAGCTTATGAAAAC+AGG | + | chr1.3:54227564-54227583 | MS.gene71420:intron | 35.0% | |
| ! | TCTCATTAGCTTAGCTTCTT+TGG | + | chr1.3:54227184-54227203 | MS.gene71420:intron | 35.0% |
| !! | AATATAGTGGACCTTCAGTT+GGG | + | chr1.3:54228538-54228557 | MS.gene71420:CDS | 35.0% |
| !! | TAATATAGTGGACCTTCAGT+TGG | + | chr1.3:54228537-54228556 | MS.gene71420:CDS | 35.0% |
| !!! | TGATTTGGATTTTGGAATGG+TGG | + | chr1.3:54227945-54227964 | MS.gene71420:intron | 35.0% |
| AAAACCACAGTGAAGACAAC+CGG | + | chr1.3:54228798-54228817 | MS.gene71420:CDS | 40.0% | |
| AAATATATTTAGGCCCCCTC+TGG | + | chr1.3:54227457-54227476 | MS.gene71420:intron | 40.0% | |
| AACATTGATGTTGTTGCTCC+TGG | - | chr1.3:54227005-54227024 | None:intergenic | 40.0% | |
| AAGGGGGAAGTAGAATCAAA+AGG | - | chr1.3:54227130-54227149 | None:intergenic | 40.0% | |
| AATGTGGCAGTTACTTCAAG+GGG | - | chr1.3:54228583-54228602 | None:intergenic | 40.0% | |
| ACAAACCACTCACAGTAAAG+AGG | - | chr1.3:54228739-54228758 | None:intergenic | 40.0% | |
| ACATTGATGTTGTTGCTCCT+GGG | - | chr1.3:54227004-54227023 | None:intergenic | 40.0% | |
| ACTTATCAAGGTTGTCTGTG+AGG | - | chr1.3:54228166-54228185 | None:intergenic | 40.0% | |
| AGCAGCAGCTTTCACAATAA+GGG | - | chr1.3:54227062-54227081 | None:intergenic | 40.0% | |
| CAGAAGATTGAACTTCAAGG+GGG | - | chr1.3:54227146-54227165 | None:intergenic | 40.0% | |
| CCAAATCAATGTGTCACATC+TGG | - | chr1.3:54227933-54227952 | None:intergenic | 40.0% | |
| CCACAATCTAATAGAGGAAG+TGG | + | chr1.3:54228876-54228895 | MS.gene71420:CDS | 40.0% | |
| CCACTTCCTCTATTAGATTG+TGG | - | chr1.3:54228879-54228898 | None:intergenic | 40.0% | |
| CCAGAAGATTGAACTTCAAG+GGG | - | chr1.3:54227147-54227166 | None:intergenic | 40.0% | |
| CTAATGTGGCAGTTACTTCA+AGG | - | chr1.3:54228585-54228604 | None:intergenic | 40.0% | |
| CTCAAATTCCAGATGCATTG+AGG | + | chr1.3:54228853-54228872 | MS.gene71420:CDS | 40.0% | |
| GACAACCTTGATAAGTTGCA+AGG | + | chr1.3:54228170-54228189 | MS.gene71420:CDS | 40.0% | |
| GACCAGAAGATTGAACTTCA+AGG | - | chr1.3:54227149-54227168 | None:intergenic | 40.0% | |
| GCTTTCACAATAAGGGATGA+AGG | - | chr1.3:54227055-54227074 | None:intergenic | 40.0% | |
| TTGAGGCCACAATCTAATAG+AGG | + | chr1.3:54228870-54228889 | MS.gene71420:CDS | 40.0% | |
| ! | ATTTGAGGCAAATCTAGAGG+CGG | - | chr1.3:54228840-54228859 | None:intergenic | 40.0% |
| ! | CCAGATGTGACACATTGATT+TGG | + | chr1.3:54227930-54227949 | MS.gene71420:intron | 40.0% |
| ! | CTCAATGCATCTGGAATTTG+AGG | - | chr1.3:54228855-54228874 | None:intergenic | 40.0% |
| ! | CTTGTTCTTGTTTCTTTCCC+AGG | + | chr1.3:54226984-54227003 | MS.gene71420:CDS | 40.0% |
| ! | GGAATTTGAGGCAAATCTAG+AGG | - | chr1.3:54228843-54228862 | None:intergenic | 40.0% |
| ! | TAGTTGTGTAAGGGTTTGCT+TGG | - | chr1.3:54227897-54227916 | None:intergenic | 40.0% |
| ! | TGAGTGGTTTGTGATGATTC+AGG | + | chr1.3:54228747-54228766 | MS.gene71420:intron | 40.0% |
| !! | ATAAGCCCGTTTTTCTGAAC+AGG | + | chr1.3:54227676-54227695 | MS.gene71420:intron | 40.0% |
| !! | TAAGCCCGTTTTTCTGAACA+GGG | + | chr1.3:54227677-54227696 | MS.gene71420:intron | 40.0% |
| AAACCACAGTGAAGACAACC+GGG | + | chr1.3:54228799-54228818 | MS.gene71420:CDS | 45.0% | |
| AACCACTCACAGTAAAGAGG+CGG | - | chr1.3:54228736-54228755 | None:intergenic | 45.0% | |
| AAGGAACTTGAAGAAGCTGG+AGG | + | chr1.3:54228131-54228150 | MS.gene71420:CDS | 45.0% | |
| AGGCTCCTTCCTATAACTCT+TGG | + | chr1.3:54228269-54228288 | MS.gene71420:CDS | 45.0% | |
| CAGACCTGTCCAAGAGTTAT+AGG | - | chr1.3:54228281-54228300 | None:intergenic | 45.0% | |
| CAGCAGCAGCTTTCACAATA+AGG | - | chr1.3:54227063-54227082 | None:intergenic | 45.0% | |
| CCCCTTGAAGTTCAATCTTC+TGG | + | chr1.3:54227144-54227163 | MS.gene71420:CDS | 45.0% | |
| CCTGTCCAAGAGTTATAGGA+AGG | - | chr1.3:54228277-54228296 | None:intergenic | 45.0% | |
| CCTTCCTATAACTCTTGGAC+AGG | + | chr1.3:54228274-54228293 | MS.gene71420:CDS | 45.0% | |
| CTTGCCCTGTTCAGAAAAAC+GGG | - | chr1.3:54227684-54227703 | None:intergenic | 45.0% | |
| GCTAAGGAACTTGAAGAAGC+TGG | + | chr1.3:54228128-54228147 | MS.gene71420:CDS | 45.0% | |
| GCTCACAAATTTGAGCTCGT+AGG | + | chr1.3:54228604-54228623 | MS.gene71420:CDS | 45.0% | |
| GCTTGCCCTGTTCAGAAAAA+CGG | - | chr1.3:54227685-54227704 | None:intergenic | 45.0% | |
| GGAGATCAAAGCACACACAT+AGG | - | chr1.3:54228417-54228436 | None:intergenic | 45.0% | |
| AGGAGATAGAGGCGAGCTAA+GGG | + | chr1.3:54228944-54228963 | MS.gene71420:CDS | 50.0% | |
| AGGGGTGAAGAAGGAGATTG+AGG | - | chr1.3:54226925-54226944 | None:intergenic | 50.0% | |
| ATAGGAAGGAGCCTTCCTGT+GGG | - | chr1.3:54228263-54228282 | None:intergenic | 50.0% | |
| CCTACAAAAGGCAGATGCTG+CGG | + | chr1.3:54228106-54228125 | MS.gene71420:CDS | 50.0% | |
| CGGCAACTGTGAAAATGTCC+CGG | - | chr1.3:54228820-54228839 | None:intergenic | 50.0% | |
| CTCTATCTCCTCTTGTGACG+CGG | - | chr1.3:54228935-54228954 | None:intergenic | 50.0% | |
| GAGAAGTTGAGGGGTGAAGA+AGG | - | chr1.3:54226934-54226953 | None:intergenic | 50.0% | |
| GATTGTGGCCTCAATGCATC+TGG | - | chr1.3:54228864-54228883 | None:intergenic | 50.0% | |
| GCTGTTGCTGGGCTAAATAG+AGG | + | chr1.3:54228062-54228081 | MS.gene71420:CDS | 50.0% | |
| GGGGTGAAGAAGGAGATTGA+GGG | - | chr1.3:54226924-54226943 | None:intergenic | 50.0% | |
| GGGTGAGAGAGAGAAGTTGA+GGG | - | chr1.3:54226944-54226963 | None:intergenic | 50.0% | |
| GGTGAGAGAGAGAAGTTGAG+GGG | - | chr1.3:54226943-54226962 | None:intergenic | 50.0% | |
| GTTGCTCAGTTGCAACTTCC+AGG | - | chr1.3:54228355-54228374 | None:intergenic | 50.0% | |
| TATAGGAAGGAGCCTTCCTG+TGG | - | chr1.3:54228264-54228283 | None:intergenic | 50.0% | |
| TCTATCTCCTCTTGTGACGC+GGG | - | chr1.3:54228934-54228953 | None:intergenic | 50.0% | |
| TCTCCTCTCGTACTCTAGGT+GGG | + | chr1.3:54228222-54228241 | MS.gene71420:CDS | 50.0% | |
| TTCTCCTCTCGTACTCTAGG+TGG | + | chr1.3:54228221-54228240 | MS.gene71420:CDS | 50.0% | |
| AAAGGCAGATGCTGCGGCTA+AGG | + | chr1.3:54228112-54228131 | MS.gene71420:CDS | 55.0% | |
| ACCTTCAGTTGGGTGCTCCA+TGG | + | chr1.3:54228548-54228567 | MS.gene71420:CDS | 55.0% | |
| CGCGTCACAAGAGGAGATAG+AGG | + | chr1.3:54228933-54228952 | MS.gene71420:CDS | 55.0% | |
| GACCGCCTCTTTACTGTGAG+TGG | + | chr1.3:54228731-54228750 | MS.gene71420:intron | 55.0% | |
| GAGGAGATAGAGGCGAGCTA+AGG | + | chr1.3:54228943-54228962 | MS.gene71420:CDS | 55.0% | |
| GCGTTCTCCTCTCGTACTCT+AGG | + | chr1.3:54228218-54228237 | MS.gene71420:CDS | 55.0% | |
| GGGGTGAGAGAGAGAAGTTG+AGG | - | chr1.3:54226945-54226964 | None:intergenic | 55.0% | |
| GTGGCAGTTACTTCAAGGGG+CGG | - | chr1.3:54228580-54228599 | None:intergenic | 55.0% | |
| GTTACTTCAAGGGGCGGTAG+AGG | - | chr1.3:54228574-54228593 | None:intergenic | 55.0% | |
| TGTCCCGGTTGTCTTCACTG+TGG | - | chr1.3:54228805-54228824 | None:intergenic | 55.0% | |
| ! | CCGCAGCATCTGCCTTTTGT+AGG | - | chr1.3:54228109-54228128 | None:intergenic | 55.0% |
| !! | ATGCTGCAGAGTGCTGTTGC+TGG | + | chr1.3:54228050-54228069 | MS.gene71420:intron | 55.0% |
| !! | TGCTGCAGAGTGCTGTTGCT+GGG | + | chr1.3:54228051-54228070 | MS.gene71420:intron | 55.0% |
| GCTCCCACCTAGAGTACGAG+AGG | - | chr1.3:54228228-54228247 | None:intergenic | 60.0% | |
| GCTGATACCCGCGTCACAAG+AGG | + | chr1.3:54228924-54228943 | MS.gene71420:CDS | 60.0% | |
| TTCCTGTGGGAGGTCCAGGA+CGG | - | chr1.3:54228250-54228269 | None:intergenic | 60.0% | |
| ! | GCCATGGAGCACCCAACTGA+AGG | - | chr1.3:54228552-54228571 | None:intergenic | 60.0% |
| ACTCTAGGTGGGAGCCGTCC+TGG | + | chr1.3:54228233-54228252 | MS.gene71420:CDS | 65.0% | |
| AGCCTTCCTGTGGGAGGTCC+AGG | - | chr1.3:54228254-54228273 | None:intergenic | 65.0% | |
| GGAAGGAGCCTTCCTGTGGG+AGG | - | chr1.3:54228260-54228279 | None:intergenic | 65.0% | |
| GTCCTGGACCTCCCACAGGA+AGG | + | chr1.3:54228249-54228268 | MS.gene71420:CDS | 65.0% | |
| TCAAGGGGCGGTAGAGGCCA+TGG | - | chr1.3:54228568-54228587 | None:intergenic | 65.0% | |
| AGCCGTCCTGGACCTCCCAC+AGG | + | chr1.3:54228245-54228264 | MS.gene71420:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 54226914 | 54228983 | 54226914 | ID=MS.gene71420 |
| chr1.3 | mRNA | 54226914 | 54228983 | 54226914 | ID=MS.gene71420.t1;Parent=MS.gene71420 |
| chr1.3 | exon | 54226914 | 54227165 | 54226914 | ID=MS.gene71420.t1.exon1;Parent=MS.gene71420.t1 |
| chr1.3 | CDS | 54226914 | 54227165 | 54226914 | ID=cds.MS.gene71420.t1;Parent=MS.gene71420.t1 |
| chr1.3 | exon | 54228059 | 54228295 | 54228059 | ID=MS.gene71420.t1.exon2;Parent=MS.gene71420.t1 |
| chr1.3 | CDS | 54228059 | 54228295 | 54228059 | ID=cds.MS.gene71420.t1;Parent=MS.gene71420.t1 |
| chr1.3 | exon | 54228499 | 54228625 | 54228499 | ID=MS.gene71420.t1.exon3;Parent=MS.gene71420.t1 |
| chr1.3 | CDS | 54228499 | 54228625 | 54228499 | ID=cds.MS.gene71420.t1;Parent=MS.gene71420.t1 |
| chr1.3 | exon | 54228769 | 54228983 | 54228769 | ID=MS.gene71420.t1.exon4;Parent=MS.gene71420.t1 |
| chr1.3 | CDS | 54228769 | 54228983 | 54228769 | ID=cds.MS.gene71420.t1;Parent=MS.gene71420.t1 |
| Gene Sequence |
| Protein sequence |
