AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene071308


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 80 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACAGTTTGGCTGTAATTTA+TGG 0.085552 8.2:+45903255 MS.gene071308:intron
AAATTGGCGGCAACTGATTT+TGG 0.158615 8.2:-45904792 None:intergenic
TTCTGGTTTGGCTGTAATTA+TGG 0.159872 8.2:+45904294 MS.gene071308:CDS
TCTTCTTCCTATCAGGTTAT+TGG 0.179542 8.2:+45904157 MS.gene071308:intron
TATAATATGGCAGGGGCTTT+TGG 0.205217 8.2:+45903415 MS.gene071308:intron
GGATTACCTGTGGCTGCTTC+TGG 0.231671 8.2:+45904277 MS.gene071308:CDS
TGACTTACTTGATGGAAAAT+TGG 0.255517 8.2:-45904808 None:intergenic
ATACATCTCTCCCTTACTTT+TGG 0.275809 8.2:+45905878 MS.gene071308:CDS
ACCTGTTCTAGCCACCCTTT+TGG 0.292716 8.2:+45904968 MS.gene071308:CDS
TCTGGTTTGGCTGTAATTAT+GGG 0.303888 8.2:+45904295 MS.gene071308:CDS
ACCTGTGGCTGCTTCTGGTT+TGG 0.311226 8.2:+45904282 MS.gene071308:CDS
ACATTCGTTGGTGGATTAAC+AGG 0.319365 8.2:+45902701 MS.gene071308:CDS
ACAGTTTGGCTGTAATTTAT+GGG 0.340507 8.2:+45903256 MS.gene071308:intron
TACATTACCATTGTGGCAGC+TGG 0.360323 8.2:-45906274 None:intergenic
ACAGGCCAATGAAGCAGTTC+TGG 0.364928 8.2:+45903114 MS.gene071308:CDS
CAGCATGGATCAATCCTATA+AGG 0.383503 8.2:+45906058 MS.gene071308:CDS
TTGGTCCAGAACTGCTTCAT+TGG 0.383991 8.2:-45903119 None:intergenic
AAAAGAAGCAGCCAAAAGTA+AGG 0.394341 8.2:-45905889 None:intergenic
GGTGTGCAAGCATACCTGGC+TGG 0.396078 8.2:+45904909 MS.gene071308:intron
CTTAGGTGTGCAAGCATACC+TGG 0.399751 8.2:+45904905 MS.gene071308:intron
CAGTGCACCTAGTAAAACTT+AGG 0.410809 8.2:-45903150 None:intergenic
GGAGGCATCGGTGACTGGTT+TGG 0.422411 8.2:+45903067 MS.gene071308:CDS
CCCAAAAGGGTGGCTAGAAC+AGG 0.429955 8.2:-45904969 None:intergenic
TGCTTCATTGGCCTGTTGTC+CGG 0.430538 8.2:-45903107 None:intergenic
TTTGTACAGAATCCAGTGAT+TGG 0.432285 8.2:+45905825 MS.gene071308:intron
AGCAAGCTGCCTCCAATCAC+TGG 0.464407 8.2:-45905837 None:intergenic
GTGTATATACCTTCTTAGAT+AGG 0.464767 8.2:+45906245 MS.gene071308:CDS
CTGATGGAGGCATCGGTGAC+TGG 0.471880 8.2:+45903062 MS.gene071308:CDS
ATGCAGCGACATATCCCAAA+AGG 0.493924 8.2:-45904983 None:intergenic
CGGTAACACACTAAGCGTAC+AGG 0.494081 8.2:-45903304 None:intergenic
CACTAAGCGTACAGGGAGAA+AGG 0.494224 8.2:-45903296 None:intergenic
CTGAACATGAAAATTGTCTT+CGG 0.494974 8.2:+45902645 MS.gene071308:CDS
TTGCTATTGACATACACAAC+AGG 0.496164 8.2:+45905855 MS.gene071308:CDS
TTGGCTGTAATTTATGGGGC+AGG 0.501817 8.2:+45903261 MS.gene071308:CDS
GACAGCGGAGCAATGCTGTT+AGG 0.503054 8.2:+45906217 MS.gene071308:intron
AATAGTATTATGACATTCGT+TGG 0.507744 8.2:+45902689 MS.gene071308:CDS
GGAAAGGCTTATGGACAGAT+TGG 0.508399 8.2:+45904250 MS.gene071308:CDS
CCGCTAACCCTCGGTTACAT+TGG 0.512502 8.2:+45903324 MS.gene071308:CDS
CCAATGTAACCGAGGGTTAG+CGG 0.518246 8.2:-45903324 None:intergenic
CTTACTTGATGGAAAATTGG+CGG 0.519821 8.2:-45904805 None:intergenic
GTGTGCAAGCATACCTGGCT+GGG 0.532324 8.2:+45904910 MS.gene071308:CDS
ATCAAAACTGTCGAAGAATG+AGG 0.532805 8.2:-45904769 None:intergenic
ACTTTGGCTGATGGAGGCAT+CGG 0.545892 8.2:+45903055 MS.gene071308:CDS
TTTGTTTCAGTACCTCAAGA+AGG 0.547535 8.2:-45904324 None:intergenic
GGCATCGGTGACTGGTTTGG+AGG 0.548333 8.2:+45903070 MS.gene071308:CDS
AAGCGTACAGGGAGAAAGGC+TGG 0.557765 8.2:-45903292 None:intergenic
AGTATTATGACATTCGTTGG+TGG 0.558895 8.2:+45902692 MS.gene071308:CDS
ACATTACCATTGTGGCAGCT+GGG 0.561699 8.2:-45906273 None:intergenic
AAAGAAGCAGCCAAAAGTAA+GGG 0.563088 8.2:-45905888 None:intergenic
CTAATGTGGTTGCAAGACCC+AGG 0.563716 8.2:-45904198 None:intergenic
CGTTTCGCAAGTACTCAGCA+TGG 0.564228 8.2:+45906043 MS.gene071308:CDS
ACATTAGCACTGCTCGGCGT+AGG 0.564422 8.2:+45904214 MS.gene071308:CDS
TCAAAACTGTCGAAGAATGA+GGG 0.564734 8.2:-45904768 None:intergenic
ATGCAAATGTAAGCCCAGCC+AGG 0.569028 8.2:-45904923 None:intergenic
GTACAGAATCCAGTGATTGG+AGG 0.569251 8.2:+45905828 MS.gene071308:intron
AGTGCACCTAGTAAAACTTA+GGG 0.569620 8.2:-45903149 None:intergenic
GCTTATGGACAGATTGGTCA+AGG 0.570804 8.2:+45904256 MS.gene071308:CDS
TGGGAACAGCCTATCTAAGA+AGG 0.570878 8.2:-45906254 None:intergenic
TACGCCGAGCAGTGCTAATG+TGG 0.571043 8.2:-45904212 None:intergenic
CAGTTTGGCTGTAATTTATG+GGG 0.573149 8.2:+45903257 MS.gene071308:intron
CGGTCGAAGTCGAAGATCGA+TGG 0.578637 8.2:+45902665 MS.gene071308:CDS
TAAAACTTAGGGACGATAGT+TGG 0.583887 8.2:-45903138 None:intergenic
GGGATATGTCGCTGCATCCA+AGG 0.585622 8.2:+45904989 MS.gene071308:CDS
AGTGTGTTACCGCTAACCCT+CGG 0.587650 8.2:+45903315 MS.gene071308:CDS
TGCAGCGACATATCCCAAAA+GGG 0.588774 8.2:-45904982 None:intergenic
GGTAACACACTAAGCGTACA+GGG 0.590535 8.2:-45903303 None:intergenic
TATGGGTCTGAACCTTCTTG+AGG 0.597434 8.2:+45904312 MS.gene071308:CDS
GGAGCAATGCTGTTAGGAGG+TGG 0.599846 8.2:+45906223 MS.gene071308:CDS
GCCAAACCAGAAGCAGCCAC+AGG 0.604082 8.2:-45904283 None:intergenic
AGCGGAGCAATGCTGTTAGG+AGG 0.617303 8.2:+45906220 MS.gene071308:intron
GCTGTTCCCAGCTGCCACAA+TGG 0.640005 8.2:+45906267 MS.gene071308:CDS
AACAGGTGTACTGCATGGTG+AGG 0.645829 8.2:-45904952 None:intergenic
GCAACCACATTAGCACTGCT+CGG 0.646811 8.2:+45904208 MS.gene071308:CDS
CAAGCTTACCAATGTAACCG+AGG 0.655920 8.2:-45903332 None:intergenic
CAAAACTGTCGAAGAATGAG+GGG 0.666686 8.2:-45904767 None:intergenic
TAATGTGGTTGCAAGACCCA+GGG 0.678219 8.2:-45904197 None:intergenic
AAGCTTACCAATGTAACCGA+GGG 0.679976 8.2:-45903331 None:intergenic
AGCGACATATCCCAAAAGGG+TGG 0.693602 8.2:-45904979 None:intergenic
GATTGGTCAAGGATTACCTG+TGG 0.709712 8.2:+45904267 MS.gene071308:CDS
GCTAGAACAGGTGTACTGCA+TGG 0.719252 8.2:-45904957 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCTAAATCTGTTATAATA+TGG + chr8.2:45903402-45903421 MS.gene071308:intron 15.0%
!! AATTCATATATGAAATGTTA+TGG - chr8.2:45903832-45903851 None:intergenic 15.0%
!! ATTCATATATGAAATGTTAT+GGG - chr8.2:45903831-45903850 None:intergenic 15.0%
!! TAAAAAACAAATTACCTTAT+AGG - chr8.2:45906075-45906094 None:intergenic 15.0%
!! TCTTGATGTAAAAATTTATA+TGG + chr8.2:45905038-45905057 MS.gene071308:intron 15.0%
!!! AAAAGTCATTTTTAATACAT+AGG - chr8.2:45904078-45904097 None:intergenic 15.0%
!!! TTAAATATCTTATTTACATG+AGG - chr8.2:45904475-45904494 None:intergenic 15.0%
!! AAACAAATCAAAAGAAACAT+AGG - chr8.2:45902963-45902982 None:intergenic 20.0%
!! AAACCAAAGTTTCAATTATT+AGG - chr8.2:45903212-45903231 None:intergenic 20.0%
!! AACCAAAGTTTCAATTATTA+GGG - chr8.2:45903211-45903230 None:intergenic 20.0%
!! AACTAATAAGCAAATAAAAC+TGG - chr8.2:45905092-45905111 None:intergenic 20.0%
!! ATTAGAAGAATAATATCATC+TGG - chr8.2:45903488-45903507 None:intergenic 20.0%
!! GATTTATCTCATAAATCTAA+TGG - chr8.2:45905621-45905640 None:intergenic 20.0%
!! GTAAAAATTTATATGGTGAT+TGG + chr8.2:45905045-45905064 MS.gene071308:intron 20.0%
!! GTTTATTACTAATGTAGTAA+GGG + chr8.2:45903558-45903577 MS.gene071308:intron 20.0%
!! TGTTTATTACTAATGTAGTA+AGG + chr8.2:45903557-45903576 MS.gene071308:intron 20.0%
!!! AAGAATTGTGTTTTTTAATC+AGG + chr8.2:45903012-45903031 MS.gene071308:intron 20.0%
!!! ACAGTATTTTAGGTATATAA+AGG + chr8.2:45904509-45904528 MS.gene071308:intron 20.0%
!!! GTAAGAAATTACAGTATTTT+AGG + chr8.2:45904499-45904518 MS.gene071308:intron 20.0%
!!! TAGTCATTTTAAAACGTTTT+TGG - chr8.2:45903381-45903400 None:intergenic 20.0%
!!! TGATATTTGTATTTGTTGAT+AGG + chr8.2:45903983-45904002 MS.gene071308:intron 20.0%
!!! TTTTTTTTTCTGTTACTGAT+TGG + chr8.2:45902787-45902806 MS.gene071308:intron 20.0%
! AAAAGATTAAATTCACGATC+CGG + chr8.2:45905709-45905728 MS.gene071308:intron 25.0%
! AAATAAAAGAGAAAGGTGAA+TGG - chr8.2:45904123-45904142 None:intergenic 25.0%
! AAATCTGTTATAATATGGCA+GGG + chr8.2:45903407-45903426 MS.gene071308:intron 25.0%
! AATAGTATTATGACATTCGT+TGG + chr8.2:45902689-45902708 MS.gene071308:CDS 25.0%
! ACCAAAGTTTCAATTATTAG+GGG - chr8.2:45903210-45903229 None:intergenic 25.0%
! AGAAAATCGATCTTCAAATA+GGG - chr8.2:45903526-45903545 None:intergenic 25.0%
! ATAGGTTCTATAATTTGGAT+AGG + chr8.2:45905377-45905396 MS.gene071308:intron 25.0%
! ATTGAAGTGTGAGAAAAAAT+CGG - chr8.2:45905499-45905518 None:intergenic 25.0%
! CGATAAAAAAATTCTTCGAA+TGG + chr8.2:45904678-45904697 MS.gene071308:intron 25.0%
! GAATGAGAAATAAAAGAGAA+AGG - chr8.2:45904130-45904149 None:intergenic 25.0%
! GTAAGTTTAAATATCTCTGT+TGG + chr8.2:45902874-45902893 MS.gene071308:intron 25.0%
! TAAATCTGTTATAATATGGC+AGG + chr8.2:45903406-45903425 MS.gene071308:intron 25.0%
! TAACAAAGTTGACAAAAAAG+TGG - chr8.2:45905578-45905597 None:intergenic 25.0%
! TAATATCATCTGGATTAACT+CGG - chr8.2:45903478-45903497 None:intergenic 25.0%
! TAATGGAAAAGAAAAATGTC+CGG - chr8.2:45905604-45905623 None:intergenic 25.0%
! TACAAGCTATCCAATTAATT+AGG - chr8.2:45906158-45906177 None:intergenic 25.0%
! TATCTTAAAGAAACGCTTTA+AGG - chr8.2:45905964-45905983 None:intergenic 25.0%
! TCGATATTCAAATCATGAAT+CGG - chr8.2:45905746-45905765 None:intergenic 25.0%
! TCTTATTCAACTTTACAGTT+TGG + chr8.2:45903242-45903261 MS.gene071308:intron 25.0%
! TGAATATTGTTGTAAACACA+AGG - chr8.2:45904393-45904412 None:intergenic 25.0%
! TTTACATCAAGAAGAAACAT+TGG - chr8.2:45905030-45905049 None:intergenic 25.0%
! TTTCATTCAAATTAACCACT+AGG - chr8.2:45902748-45902767 None:intergenic 25.0%
!! ATTTTATATTCCGTGAAGAT+AGG - chr8.2:45903775-45903794 None:intergenic 25.0%
!!! CACATTTAGTTCTTTCAATA+TGG + chr8.2:45904844-45904863 MS.gene071308:intron 25.0%
!!! CTTCTAATTGTCCATTTTTA+TGG + chr8.2:45903500-45903519 MS.gene071308:intron 25.0%
!!! GTGTTACTCATTGAATTTTT+TGG + chr8.2:45904434-45904453 MS.gene071308:intron 25.0%
!!! TGTGTTTTTTAATCAGGAAA+TGG + chr8.2:45903018-45903037 MS.gene071308:intron 25.0%
!!! TTTGATTTGTTTATTTTCCG+TGG + chr8.2:45902971-45902990 MS.gene071308:intron 25.0%
AATATCATCTGGATTAACTC+GGG - chr8.2:45903477-45903496 None:intergenic 30.0%
AATCTGTTATAATATGGCAG+GGG + chr8.2:45903408-45903427 MS.gene071308:intron 30.0%
ACAGTTTGGCTGTAATTTAT+GGG + chr8.2:45903256-45903275 MS.gene071308:intron 30.0%
AGAAAAAATCGGTCTATTTC+CGG - chr8.2:45905488-45905507 None:intergenic 30.0%
ATAGACATAAAATCGTTGAG+CGG - chr8.2:45903182-45903201 None:intergenic 30.0%
ATGTCAAATGCTTAGATGTT+TGG + chr8.2:45903730-45903749 MS.gene071308:intron 30.0%
CATGAACAAATTCTACTCTT+AGG + chr8.2:45904888-45904907 MS.gene071308:intron 30.0%
CTATCCAATTAATTAGGAAG+TGG - chr8.2:45906152-45906171 None:intergenic 30.0%
CTGAACATGAAAATTGTCTT+CGG + chr8.2:45902645-45902664 MS.gene071308:CDS 30.0%
GAAAAGTGATATCACAGATT+CGG - chr8.2:45904351-45904370 None:intergenic 30.0%
GAGAAAATCGATCTTCAAAT+AGG - chr8.2:45903527-45903546 None:intergenic 30.0%
GAGTAAAAGAAACTACATCT+TGG - chr8.2:45904550-45904569 None:intergenic 30.0%
GTATCCACTTCCTAATTAAT+TGG + chr8.2:45906145-45906164 MS.gene071308:intron 30.0%
GTGACTAAATATGCAAATCA+TGG - chr8.2:45905777-45905796 None:intergenic 30.0%
GTGTATATACCTTCTTAGAT+AGG + chr8.2:45906245-45906264 MS.gene071308:CDS 30.0%
TACAGTTTGGCTGTAATTTA+TGG + chr8.2:45903255-45903274 MS.gene071308:intron 30.0%
TCCCCTAATAATTGAAACTT+TGG + chr8.2:45903206-45903225 MS.gene071308:intron 30.0%
TGACTTACTTGATGGAAAAT+TGG - chr8.2:45904811-45904830 None:intergenic 30.0%
TGATCTGCGAAAAAAATTCA+AGG - chr8.2:45904734-45904753 None:intergenic 30.0%
TTCAAATAGGGCCATAAAAA+TGG - chr8.2:45903514-45903533 None:intergenic 30.0%
! AAGAAACATTGGTTACTAAC+AGG - chr8.2:45905019-45905038 None:intergenic 30.0%
! AATATTTTCAGCTGCACAAT+TGG + chr8.2:45902828-45902847 MS.gene071308:intron 30.0%
! TCAATGTTTTCTTAACCTAG+TGG + chr8.2:45902730-45902749 MS.gene071308:intron 30.0%
! TGAATCGGAAGAAAATTTTC+CGG - chr8.2:45905731-45905750 None:intergenic 30.0%
! TTGGAGTTTTCTAAGTATGA+AGG + chr8.2:45905439-45905458 MS.gene071308:intron 30.0%
! TTTGTCAACTTTGTTATAGC+CGG + chr8.2:45905582-45905601 MS.gene071308:intron 30.0%
! TTTTCTAAGTATGAAGGATC+CGG + chr8.2:45905445-45905464 MS.gene071308:intron 30.0%
!! ATAAAACTGGTTTACCCTTT+TGG - chr8.2:45905079-45905098 None:intergenic 30.0%
!! ATCGGTCAAATCGATTTTAT+TGG + chr8.2:45905146-45905165 MS.gene071308:intron 30.0%
!!! TGTTGTCGTTTTACGTTTTT+CGG + chr8.2:45903353-45903372 MS.gene071308:intron 30.0%
AAAAGAAGCAGCCAAAAGTA+AGG - chr8.2:45905892-45905911 None:intergenic 35.0%
AAAGAAGCAGCCAAAAGTAA+GGG - chr8.2:45905891-45905910 None:intergenic 35.0%
AACAATGTCTTCTTCCTATC+AGG + chr8.2:45904150-45904169 MS.gene071308:intron 35.0%
AAGCAATGTCTCGCATAATT+TGG + chr8.2:45905531-45905550 MS.gene071308:intron 35.0%
ACCCAATCAATACAAATCTC+CGG + chr8.2:45905292-45905311 MS.gene071308:intron 35.0%
AGAATCTCCAATAACCTGAT+AGG - chr8.2:45904167-45904186 None:intergenic 35.0%
AGTATTATGACATTCGTTGG+TGG + chr8.2:45902692-45902711 MS.gene071308:CDS 35.0%
AGTCACTCTTATGCAAATGA+AGG + chr8.2:45905791-45905810 MS.gene071308:intron 35.0%
AGTGCACCTAGTAAAACTTA+GGG - chr8.2:45903152-45903171 None:intergenic 35.0%
ATCAAAACTGTCGAAGAATG+AGG - chr8.2:45904772-45904791 None:intergenic 35.0%
ATGTCATTACACCATTGCTT+AGG + chr8.2:45903583-45903602 MS.gene071308:intron 35.0%
CAGTTTGGCTGTAATTTATG+GGG + chr8.2:45903257-45903276 MS.gene071308:intron 35.0%
CCAGAAGACATTAATGCAAA+AGG - chr8.2:45902925-45902944 None:intergenic 35.0%
CGAGGATAGGTTCTATAATT+TGG + chr8.2:45905372-45905391 MS.gene071308:intron 35.0%
CTTACTTGATGGAAAATTGG+CGG - chr8.2:45904808-45904827 None:intergenic 35.0%
GAAAGCAAGCTCTGTAAATA+CGG - chr8.2:45906024-45906043 None:intergenic 35.0%
GATTGGAAAAAGAGCCAAAA+GGG + chr8.2:45905062-45905081 MS.gene071308:intron 35.0%
TAAAACTTAGGGACGATAGT+TGG - chr8.2:45903141-45903160 None:intergenic 35.0%
TCAAAACTGTCGAAGAATGA+GGG - chr8.2:45904771-45904790 None:intergenic 35.0%
TCTTCTTCCTATCAGGTTAT+TGG + chr8.2:45904157-45904176 MS.gene071308:intron 35.0%
TGATTGGAAAAAGAGCCAAA+AGG + chr8.2:45905061-45905080 MS.gene071308:intron 35.0%
TTACTTACGTTTGCATGTCA+AGG + chr8.2:45905196-45905215 MS.gene071308:intron 35.0%
TTCATAGTCTAACTCTCAGT+TGG + chr8.2:45904409-45904428 MS.gene071308:intron 35.0%
TTTGTACAGAATCCAGTGAT+TGG + chr8.2:45905825-45905844 MS.gene071308:intron 35.0%
TTTGTTTCAGTACCTCAAGA+AGG - chr8.2:45904327-45904346 None:intergenic 35.0%
! ACTCTGTTTAGTCTTTACCT+AGG + chr8.2:45905347-45905366 MS.gene071308:intron 35.0%
! AGATTCTATAGCATTTTCCC+TGG + chr8.2:45904180-45904199 MS.gene071308:CDS 35.0%
! ATACATCTCTCCCTTACTTT+TGG + chr8.2:45905878-45905897 MS.gene071308:CDS 35.0%
! CCTTTTGCATTAATGTCTTC+TGG + chr8.2:45902922-45902941 MS.gene071308:intron 35.0%
! GATTCTATAGCATTTTCCCT+GGG + chr8.2:45904181-45904200 MS.gene071308:CDS 35.0%
! TAGTGTTCTAGGTTTCAGTA+AGG + chr8.2:45903620-45903639 MS.gene071308:intron 35.0%
! TATCGTCCCTAAGTTTTACT+AGG + chr8.2:45903143-45903162 MS.gene071308:CDS 35.0%
! TTGCTATTGACATACACAAC+AGG + chr8.2:45905855-45905874 MS.gene071308:CDS 35.0%
!! ACCGGAGATTTGTATTGATT+GGG - chr8.2:45905296-45905315 None:intergenic 35.0%
!! GTTTATTTTCCGTGGTAGTT+TGG + chr8.2:45902979-45902998 MS.gene071308:intron 35.0%
!! TCTGGTTTGGCTGTAATTAT+GGG + chr8.2:45904295-45904314 MS.gene071308:CDS 35.0%
!! TTCTGGTTTGGCTGTAATTA+TGG + chr8.2:45904294-45904313 MS.gene071308:CDS 35.0%
!!! CACTTGTTGTTCTGTTTTCT+TGG + chr8.2:45903868-45903887 MS.gene071308:intron 35.0%
AAAACTCAGCAGTCTCACAT+CGG + chr8.2:45905128-45905147 MS.gene071308:intron 40.0%
AAGCTTACCAATGTAACCGA+GGG - chr8.2:45903334-45903353 None:intergenic 40.0%
AATAGAACACACACACACAC+CGG - chr8.2:45905314-45905333 None:intergenic 40.0%
ACCTACACTTTCCTAAGCAA+TGG - chr8.2:45903597-45903616 None:intergenic 40.0%
AGTGGCAGATCATGAATGTT+CGG - chr8.2:45905560-45905579 None:intergenic 40.0%
CAAAACTGTCGAAGAATGAG+GGG - chr8.2:45904770-45904789 None:intergenic 40.0%
CACGACAAGTATCAGAAACA+TGG - chr8.2:45906185-45906204 None:intergenic 40.0%
CAGCATGGATCAATCCTATA+AGG + chr8.2:45906058-45906077 MS.gene071308:CDS 40.0%
CAGTGCACCTAGTAAAACTT+AGG - chr8.2:45903153-45903172 None:intergenic 40.0%
CCAAATGCCTACCATAGTTA+CGG - chr8.2:45905423-45905442 None:intergenic 40.0%
CCATCAGCCAAAGTAAAAAC+AGG - chr8.2:45903049-45903068 None:intergenic 40.0%
CCTTCTACTTCCTATCTTCA+CGG + chr8.2:45903762-45903781 MS.gene071308:intron 40.0%
CTGTCTCTGTTTGTGTTTGT+GGG - chr8.2:45903926-45903945 None:intergenic 40.0%
GGTTACTAACAGGAATACCT+TGG - chr8.2:45905009-45905028 None:intergenic 40.0%
TACATAGGCTCAACTTCTCA+AGG - chr8.2:45904063-45904082 None:intergenic 40.0%
TCTGTCTCTGTTTGTGTTTG+TGG - chr8.2:45903927-45903946 None:intergenic 40.0%
TGTCTCTGTTTGTGTTTGTG+GGG - chr8.2:45903925-45903944 None:intergenic 40.0%
! ACCATTGCTTAGGAAAGTGT+AGG + chr8.2:45903593-45903612 MS.gene071308:intron 40.0%
! CACCGGAGATTTGTATTGAT+TGG - chr8.2:45905297-45905316 None:intergenic 40.0%
! GTTTTTACTTTGGCTGATGG+AGG + chr8.2:45903049-45903068 MS.gene071308:CDS 40.0%
! TAACCAGTGTGTTGCTCTTT+AGG + chr8.2:45903673-45903692 MS.gene071308:intron 40.0%
! TATAATATGGCAGGGGCTTT+TGG + chr8.2:45903415-45903434 MS.gene071308:intron 40.0%
! TCTTTTGCAGGAAAGGCTTA+TGG + chr8.2:45904241-45904260 MS.gene071308:CDS 40.0%
! TTAGTCTTTACCTAGGAACG+AGG + chr8.2:45905354-45905373 MS.gene071308:intron 40.0%
!! AAATTGGCGGCAACTGATTT+TGG - chr8.2:45904795-45904814 None:intergenic 40.0%
!! ACATTCGTTGGTGGATTAAC+AGG + chr8.2:45902701-45902720 MS.gene071308:CDS 40.0%
!! GAGAGCATTGACTTACTTGA+TGG - chr8.2:45904819-45904838 None:intergenic 40.0%
!! GTGTAGGTTTCTAGTGTTCT+AGG + chr8.2:45903609-45903628 MS.gene071308:intron 40.0%
!! TTTTGGCTGCTTCTTTTGCT+GGG + chr8.2:45905895-45905914 MS.gene071308:CDS 40.0%
!!! CCTGTTTTTACTTTGGCTGA+TGG + chr8.2:45903046-45903065 MS.gene071308:CDS 40.0%
!!! GGTTGCTCCTGTTTTTACTT+TGG + chr8.2:45903039-45903058 MS.gene071308:CDS 40.0%
ACATTACCATTGTGGCAGCT+GGG - chr8.2:45906276-45906295 None:intergenic 45.0%
ATCATCTGGATTAACTCGGG+CGG - chr8.2:45903474-45903493 None:intergenic 45.0%
ATCTCGACCGTAACTATGGT+AGG + chr8.2:45905413-45905432 MS.gene071308:intron 45.0%
ATGCAGCGACATATCCCAAA+AGG - chr8.2:45904986-45905005 None:intergenic 45.0%
CAAGCTTACCAATGTAACCG+AGG - chr8.2:45903335-45903354 None:intergenic 45.0%
CCGTAACTATGGTAGGCATT+TGG + chr8.2:45905420-45905439 MS.gene071308:intron 45.0%
CCGTGAAGATAGGAAGTAGA+AGG - chr8.2:45903765-45903784 None:intergenic 45.0%
CTTTACCTAGGAACGAGGAT+AGG + chr8.2:45905359-45905378 MS.gene071308:intron 45.0%
GACTATCTCGACCGTAACTA+TGG + chr8.2:45905409-45905428 MS.gene071308:intron 45.0%
GGAAAGGCTTATGGACAGAT+TGG + chr8.2:45904250-45904269 MS.gene071308:CDS 45.0%
GGCATGATATCCTCAGATAC+CGG - chr8.2:45905467-45905486 None:intergenic 45.0%
GGTAACACACTAAGCGTACA+GGG - chr8.2:45903306-45903325 None:intergenic 45.0%
GGTATCTGAGGATATCATGC+CGG + chr8.2:45905466-45905485 MS.gene071308:intron 45.0%
GTACAGAATCCAGTGATTGG+AGG + chr8.2:45905828-45905847 MS.gene071308:intron 45.0%
TAATGTGGTTGCAAGACCCA+GGG - chr8.2:45904200-45904219 None:intergenic 45.0%
TACATTACCATTGTGGCAGC+TGG - chr8.2:45906277-45906296 None:intergenic 45.0%
TAGAACCTATCCTCGTTCCT+AGG - chr8.2:45905367-45905386 None:intergenic 45.0%
TATGAAGGATCCGGTATCTG+AGG + chr8.2:45905454-45905473 MS.gene071308:intron 45.0%
TATGGGTCTGAACCTTCTTG+AGG + chr8.2:45904312-45904331 MS.gene071308:CDS 45.0%
TGCAGCGACATATCCCAAAA+GGG - chr8.2:45904985-45905004 None:intergenic 45.0%
TGGGAACAGCCTATCTAAGA+AGG - chr8.2:45906257-45906276 None:intergenic 45.0%
TGTCCTAAAGAGCAACACAC+TGG - chr8.2:45903679-45903698 None:intergenic 45.0%
TTCCTGAGACCAAACTACCA+CGG - chr8.2:45902991-45903010 None:intergenic 45.0%
TTGGCTGTAATTTATGGGGC+AGG + chr8.2:45903261-45903280 MS.gene071308:CDS 45.0%
TTGGTCCAGAACTGCTTCAT+TGG - chr8.2:45903122-45903141 None:intergenic 45.0%
! CTTACAGCTTTTGCAGTGAC+TGG - chr8.2:45902859-45902878 None:intergenic 45.0%
! GATTGGTCAAGGATTACCTG+TGG + chr8.2:45904267-45904286 MS.gene071308:CDS 45.0%
! GCTTATGGACAGATTGGTCA+AGG + chr8.2:45904256-45904275 MS.gene071308:CDS 45.0%
! TCTATTTTCAGCCGGACAAC+AGG + chr8.2:45903096-45903115 MS.gene071308:CDS 45.0%
! TTTGGCTGCTTCTTTTGCTG+GGG + chr8.2:45905896-45905915 MS.gene071308:CDS 45.0%
!! CTTTTGGCTGCTTCTTTTGC+TGG + chr8.2:45905894-45905913 MS.gene071308:CDS 45.0%
!! GTGATTTGCTTGTTCGACAG+CGG + chr8.2:45906202-45906221 MS.gene071308:intron 45.0%
!!! GGAGGCATTCTATTTTCAGC+CGG + chr8.2:45903088-45903107 MS.gene071308:CDS 45.0%
AACAGGTGTACTGCATGGTG+AGG - chr8.2:45904955-45904974 None:intergenic 50.0%
ACAGGCCAATGAAGCAGTTC+TGG + chr8.2:45903114-45903133 MS.gene071308:CDS 50.0%
AGCGACATATCCCAAAAGGG+TGG - chr8.2:45904982-45905001 None:intergenic 50.0%
AGTGTGTTACCGCTAACCCT+CGG + chr8.2:45903315-45903334 MS.gene071308:CDS 50.0%
ATGCAAATGTAAGCCCAGCC+AGG - chr8.2:45904926-45904945 None:intergenic 50.0%
CACTAAGCGTACAGGGAGAA+AGG - chr8.2:45903299-45903318 None:intergenic 50.0%
CCAATGTAACCGAGGGTTAG+CGG - chr8.2:45903327-45903346 None:intergenic 50.0%
CGGTAACACACTAAGCGTAC+AGG - chr8.2:45903307-45903326 None:intergenic 50.0%
CGTTTCGCAAGTACTCAGCA+TGG + chr8.2:45906043-45906062 MS.gene071308:CDS 50.0%
CTAATGTGGTTGCAAGACCC+AGG - chr8.2:45904201-45904220 None:intergenic 50.0%
CTTAGGTGTGCAAGCATACC+TGG + chr8.2:45904905-45904924 MS.gene071308:intron 50.0%
GCAACCACATTAGCACTGCT+CGG + chr8.2:45904208-45904227 MS.gene071308:CDS 50.0%
GCTAGAACAGGTGTACTGCA+TGG - chr8.2:45904960-45904979 None:intergenic 50.0%
TTCCGTGGTAGTTTGGTCTC+AGG + chr8.2:45902986-45903005 MS.gene071308:intron 50.0%
! ACCTGTTCTAGCCACCCTTT+TGG + chr8.2:45904968-45904987 MS.gene071308:CDS 50.0%
! ACTTTGGCTGATGGAGGCAT+CGG + chr8.2:45903055-45903074 MS.gene071308:CDS 50.0%
! CCTGTTCTAGCCACCCTTTT+GGG + chr8.2:45904969-45904988 MS.gene071308:CDS 50.0%
! CTCTGGAAAAAGCAGAGCAC+AGG + chr8.2:45903438-45903457 MS.gene071308:CDS 50.0%
! TGCTTCATTGGCCTGTTGTC+CGG - chr8.2:45903110-45903129 None:intergenic 50.0%
!! TTCTTTTGCTGGGGCGTTAC+AGG + chr8.2:45905905-45905924 MS.gene071308:CDS 50.0%
!!! AGGAGCGTCTTTTGCAGGAA+AGG + chr8.2:45904234-45904253 MS.gene071308:CDS 50.0%
AAGCGTACAGGGAGAAAGGC+TGG - chr8.2:45903295-45903314 None:intergenic 55.0%
ACATTAGCACTGCTCGGCGT+AGG + chr8.2:45904214-45904233 MS.gene071308:CDS 55.0%
AGCAAGCTGCCTCCAATCAC+TGG - chr8.2:45905840-45905859 None:intergenic 55.0%
AGCGGAGCAATGCTGTTAGG+AGG + chr8.2:45906220-45906239 MS.gene071308:intron 55.0%
CCCAAAAGGGTGGCTAGAAC+AGG - chr8.2:45904972-45904991 None:intergenic 55.0%
CCGCTAACCCTCGGTTACAT+TGG + chr8.2:45903324-45903343 MS.gene071308:CDS 55.0%
CGGTCGAAGTCGAAGATCGA+TGG + chr8.2:45902665-45902684 MS.gene071308:CDS 55.0%
GACAGCGGAGCAATGCTGTT+AGG + chr8.2:45906217-45906236 MS.gene071308:intron 55.0%
GGAGCAATGCTGTTAGGAGG+TGG + chr8.2:45906223-45906242 MS.gene071308:CDS 55.0%
GGATTACCTGTGGCTGCTTC+TGG + chr8.2:45904277-45904296 MS.gene071308:CDS 55.0%
GGGATATGTCGCTGCATCCA+AGG + chr8.2:45904989-45905008 MS.gene071308:CDS 55.0%
GTGTGCAAGCATACCTGGCT+GGG + chr8.2:45904910-45904929 MS.gene071308:CDS 55.0%
TACGCCGAGCAGTGCTAATG+TGG - chr8.2:45904215-45904234 None:intergenic 55.0%
! ACCTGTGGCTGCTTCTGGTT+TGG + chr8.2:45904282-45904301 MS.gene071308:CDS 55.0%
GCCAAACCAGAAGCAGCCAC+AGG - chr8.2:45904286-45904305 None:intergenic 60.0%
GCTGTTCCCAGCTGCCACAA+TGG + chr8.2:45906267-45906286 MS.gene071308:CDS 60.0%
GGTGTGCAAGCATACCTGGC+TGG + chr8.2:45904909-45904928 MS.gene071308:intron 60.0%
!! CTGATGGAGGCATCGGTGAC+TGG + chr8.2:45903062-45903081 MS.gene071308:CDS 60.0%
!! GGAGGCATCGGTGACTGGTT+TGG + chr8.2:45903067-45903086 MS.gene071308:CDS 60.0%
!! GGCATCGGTGACTGGTTTGG+AGG + chr8.2:45903070-45903089 MS.gene071308:CDS 60.0%
!!! ATGGCAGGGGCTTTTGGCTC+TGG + chr8.2:45903421-45903440 MS.gene071308:intron 60.0%
!!! GGCGTAGGAGCGTCTTTTGC+AGG + chr8.2:45904229-45904248 MS.gene071308:CDS 60.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 45902639 45906297 45902639 ID=MS.gene071308
chr8.2 mRNA 45902639 45906297 45902639 ID=MS.gene071308.t1;Parent=MS.gene071308
chr8.2 exon 45902639 45902722 45902639 ID=MS.gene071308.t1.exon1;Parent=MS.gene071308.t1
chr8.2 CDS 45902639 45902722 45902639 ID=cds.MS.gene071308.t1;Parent=MS.gene071308.t1
chr8.2 exon 45902839 45902873 45902839 ID=MS.gene071308.t1.exon2;Parent=MS.gene071308.t1
chr8.2 CDS 45902839 45902873 45902839 ID=cds.MS.gene071308.t1;Parent=MS.gene071308.t1
chr8.2 exon 45903034 45903164 45903034 ID=MS.gene071308.t1.exon3;Parent=MS.gene071308.t1
chr8.2 CDS 45903034 45903164 45903034 ID=cds.MS.gene071308.t1;Parent=MS.gene071308.t1
chr8.2 exon 45903260 45903345 45903260 ID=MS.gene071308.t1.exon4;Parent=MS.gene071308.t1
chr8.2 CDS 45903260 45903345 45903260 ID=cds.MS.gene071308.t1;Parent=MS.gene071308.t1
chr8.2 exon 45903428 45903459 45903428 ID=MS.gene071308.t1.exon5;Parent=MS.gene071308.t1
chr8.2 CDS 45903428 45903459 45903428 ID=cds.MS.gene071308.t1;Parent=MS.gene071308.t1
chr8.2 exon 45904172 45904333 45904172 ID=MS.gene071308.t1.exon6;Parent=MS.gene071308.t1
chr8.2 CDS 45904172 45904333 45904172 ID=cds.MS.gene071308.t1;Parent=MS.gene071308.t1
chr8.2 exon 45904750 45904822 45904750 ID=MS.gene071308.t1.exon7;Parent=MS.gene071308.t1
chr8.2 CDS 45904750 45904822 45904750 ID=cds.MS.gene071308.t1;Parent=MS.gene071308.t1
chr8.2 exon 45904910 45905010 45904910 ID=MS.gene071308.t1.exon8;Parent=MS.gene071308.t1
chr8.2 CDS 45904910 45905010 45904910 ID=cds.MS.gene071308.t1;Parent=MS.gene071308.t1
chr8.2 exon 45905834 45905926 45905834 ID=MS.gene071308.t1.exon9;Parent=MS.gene071308.t1
chr8.2 CDS 45905834 45905926 45905834 ID=cds.MS.gene071308.t1;Parent=MS.gene071308.t1
chr8.2 exon 45906033 45906079 45906033 ID=MS.gene071308.t1.exon10;Parent=MS.gene071308.t1
chr8.2 CDS 45906033 45906079 45906033 ID=cds.MS.gene071308.t1;Parent=MS.gene071308.t1
chr8.2 exon 45906222 45906297 45906222 ID=MS.gene071308.t1.exon11;Parent=MS.gene071308.t1
chr8.2 CDS 45906222 45906297 45906222 ID=cds.MS.gene071308.t1;Parent=MS.gene071308.t1
Gene Sequence

>MS.gene071308

TTACTACTGAACATGAAAATTGTCTTCGGTCGAAGTCGAAGATCGATGGAAATAGTATTATGACATTCGTTGGTGGATTAACAGGTAAAGCTCAATGTTTTCTTAACCTAGTGGTTAATTTGAATGAAATATGCTACTGCATTTTTATTTTTTTTTTCTGTTACTGATTGGCATTTTTGTCAAATTTTCAATATTTTCAGCTGCACAATTGGTTGCTCCAGTCACTGCAAAAGCTGTAAGTTTAAATATCTCTGTTGGTGAGAATCTTGAGATGTTTCTATGTCCTTTTGCATTAATGTCTTCTGGAATTCTTGTCTCTTTCCTATGTTTCTTTTGATTTGTTTATTTTCCGTGGTAGTTTGGTCTCAGGAACAAGAATTGTGTTTTTTAATCAGGAAATGGTTGCTCCTGTTTTTACTTTGGCTGATGGAGGCATCGGTGACTGGTTTGGAGGCATTCTATTTTCAGCCGGACAACAGGCCAATGAAGCAGTTCTGGACCAACTATCGTCCCTAAGTTTTACTAGGTGCACTGTGAATTCCGCTCAACGATTTTATGTCTATCATTTCCCCTAATAATTGAAACTTTGGTTTTTTATATGCTTCTTATTCAACTTTACAGTTTGGCTGTAATTTATGGGGCAGGACTTGTAACCAGCCTTTCTCCCTGTACGCTTAGTGTGTTACCGCTAACCCTCGGTTACATTGGTAAGCTTGTTGTCGTTTTACGTTTTTCGGTACCAAAAACGTTTTAAAATGACTAAAATCTAAATCTGTTATAATATGGCAGGGGCTTTTGGCTCTGGAAAAAGCAGAGCACAGGTAATCTCTTGCCGCCCGAGTTAATCCAGATGATATTATTCTTCTAATTGTCCATTTTTATGGCCCTATTTGAAGATCGATTTTCTCTTATTACTATTGTTTATTACTAATGTAGTAAGGGATATGTCATTACACCATTGCTTAGGAAAGTGTAGGTTTCTAGTGTTCTAGGTTTCAGTAAGGTGAAAGTTACTAATATATAGCAGCATTTCATAACCAGTGTGTTGCTCTTTAGGACACGCTTTCTTTAGAACAAAATAGACATTTTCTATGTCAAATGCTTAGATGTTTGGTCTCTTGATCCTTCTACTTCCTATCTTCACGGAATATAAAATTTTGTTAACTGCATATTTGCAGATGTCACAAGACCCATAACATTTCATATATGAATTTTCTCATAAGTGTCATCACTTGTTGTTCTGTTTTCTTGGTTTTCGACAAATTCTGTCTGAGTGTTTCGTGCCCCACAAACACAAACAGAGACAGAATTCTCACAAAGAATAATGTTGTTCAAAATATAATATGATATTTGTATTTGTTGATAGGCATATCATATATGTAAATAGCAATAGTATCTTCTATATTTATTTGTATAGATTGCCTTGAGAAGTTGAGCCTATGTATTAAAAATGACTTTTGTAGTTCAAACAATCGATTTCACCATTCACCTTTCTCTTTTATTTCTCATTCAACAATGTCTTCTTCCTATCAGGTTATTGGAGATTCTATAGCATTTTCCCTGGGTCTTGCAACCACATTAGCACTGCTCGGCGTAGGAGCGTCTTTTGCAGGAAAGGCTTATGGACAGATTGGTCAAGGATTACCTGTGGCTGCTTCTGGTTTGGCTGTAATTATGGGTCTGAACCTTCTTGAGGTACTGAAACAAATCCGAATCTGTGATATCACTTTTCTTATCTTTTTGCTTAATTTCCTTGTGTTTACAACAATATTCATAGTCTAACTCTCAGTTGGCAGTGTTACTCATTGAATTTTTTGGAACTTTTTTTTTCAACCTCATGTAAATAAGATATTTAATACTGTAAGAAATTACAGTATTTTAGGTATATAAAGGTAGTCTTATATTTTACCAAGATGTAGTTTCTTTTACTCTTAACTACTAAGATCAAATTACATAATGAAATATTCAGACTAAATTAGTTACTTTAGCAAGAAGACATACAACAGATTCACTGAAGCAAGTTTTTGAAAGTTAATCAACGATAAAAAAATTCTTCGAATGGACATTTTTCTTTATATTTGTCTGTTATTCACCTTGAATTTTTTTCGCAGATCATTGAATTACAGCTCCCCTCATTCTTCGACAGTTTTGATCCAAAATCAGTTGCCGCCAATTTTCCATCAAGTAAGTCAATGCTCTCATGCTCACATTTAGTTCTTTCAATATGGATTTTAATGAAGAGCATTTTACATGAACAAATTCTACTCTTAGGTGTGCAAGCATACCTGGCTGGGCTTACATTTGCATTAGCTGCCTCACCATGCAGTACACCTGTTCTAGCCACCCTTTTGGGATATGTCGCTGCATCCAAGGTATTCCTGTTAGTAACCAATGTTTCTTCTTGATGTAAAAATTTATATGGTGATTGGAAAAAGAGCCAAAAGGGTAAACCAGTTTTATTTGCTTATTAGTTTCAGTTCGTCAGTTTAAAAACTCAGCAGTCTCACATCGGTCAAATCGATTTTATTGGTAGCATTTTAAATCTAATATGTCAAAGTTACTTACGTTTGCATGTCAAGGAATATTCACACATCATGATTACGAGTATCTTACGATACATGCGAGTCATATCTCGATTCGAATACAAAAATAAACCCAATCAATACAAATCTCCGGTGTGTGTGTGTGTTCTATTAAATCATTACAAAACTCTGTTTAGTCTTTACCTAGGAACGAGGATAGGTTCTATAATTTGGATAGGTATGATAGTGACTATCTCGACCGTAACTATGGTAGGCATTTGGAGTTTTCTAAGTATGAAGGATCCGGTATCTGAGGATATCATGCCGGAAATAGACCGATTTTTTCTCACACTTCAATTCGAATTAGCAAAAGCAATGTCTCGCATAATTTGGATTCCGAACATTCATGATCTGCCACTTTTTTGTCAACTTTGTTATAGCCGGACATTTTTCTTTTCCATTAGATTTATGAGATAAATCTTGCATTAGTTAACTTATCATTTTGCTATATCACTTTTTTTTGCTGAAAAATGTATCTTATGATTCATAAAAGATTAAATTCACGATCCGGAAAATTTTCTTCCGATTCATGATTTGAATATCGATCTGATAACCATGATTTGCATATTTAGTCACTCTTATGCAAATGAAGGAAATGAATATTTTTGTACAGAATCCAGTGATTGGAGGCAGCTTGCTATTGACATACACAACAGGATACATCTCTCCCTTACTTTTGGCTGCTTCTTTTGCTGGGGCGTTACAGGTTCATACATGATTTGTTTTGTTTTTACAAATAACCTTAAAGCGTTTCTTTAAGATATAGATCTCTCATTGAAAACATTGTTTCTAATTCAAATCCGTATTTACAGAGCTTGCTTTCGTTTCGCAAGTACTCAGCATGGATCAATCCTATAAGGTAATTTGTTTTTTAACTTTCAGTAAACACTTACAGCATCACATGATTATTTTCTAGTTTCAAGAGTATCCACTTCCTAATTAATTGGATAGCTTGTATTTTCCATGTTTCTGATACTTGTCGTGATTTGCTTGTTCGACAGCGGAGCAATGCTGTTAGGAGGTGGTGTATATACCTTCTTAGATAGGCTGTTCCCAGCTGCCACAATGGTAATGTAG

Protein sequence

>MS.gene071308.t1

LLLNMKIVFGRSRRSMEIVLUHSLVDUQLHNWLLQSLQKLKWLLLFLLWLMEASVTGLEAFYFQPDNRPMKQFWTNYRPUVLLVWLUFMGQDLUPAFLPVRLVCYRUPSVTLGLLALEKAEHRLLEILUHFPWVLQPHUHCSAUERLLQERLMDRLVKDYLWLLLVWLULWVUTFLRSLNYSSPHSSTVLIQNQLPPIFHQVCKHTWLGLHLHULPHHAVHLFUPPFWDMSLHPRIQULEAACYUHTQQDTSLPYFWLLLLLGRYRACFRFASTQHGSILUAEQCCUEVVYIPSUIGCSQLPQWUC