Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28334.t1 | XP_013456310.1 | 99.2 | 240 | 2 | 0 | 1 | 240 | 1 | 240 | 1.40E-134 | 488.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28334.t1 | Q96288 | 63.3 | 248 | 83 | 5 | 1 | 240 | 1 | 248 | 1.2e-81 | 304.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28334.t1 | A0A072ULU3 | 99.2 | 240 | 2 | 0 | 1 | 240 | 1 | 240 | 1.0e-134 | 488.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene28334.t1 | TF | DBB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene28334 | 0.831396 | 1.71E-55 | -1.69E-46 |
| MS.gene049217 | MS.gene28334 | 0.801087 | 1.06E-48 | -1.69E-46 |
| MS.gene04921 | MS.gene28334 | -0.808968 | 2.39E-50 | -1.69E-46 |
| MS.gene049222 | MS.gene28334 | 0.839679 | 1.37E-57 | -1.69E-46 |
| MS.gene049232 | MS.gene28334 | 0.848945 | 4.44E-60 | -1.69E-46 |
| MS.gene049285 | MS.gene28334 | 0.828795 | 7.37E-55 | -1.69E-46 |
| MS.gene049298 | MS.gene28334 | -0.827901 | 1.21E-54 | -1.69E-46 |
| MS.gene049320 | MS.gene28334 | 0.833839 | 4.23E-56 | -1.69E-46 |
| MS.gene04932 | MS.gene28334 | -0.815364 | 9.60E-52 | -1.69E-46 |
| MS.gene049396 | MS.gene28334 | 0.810092 | 1.37E-50 | -1.69E-46 |
| MS.gene049611 | MS.gene28334 | -0.818977 | 1.48E-52 | -1.69E-46 |
| MS.gene049633 | MS.gene28334 | 0.849446 | 3.22E-60 | -1.69E-46 |
| MS.gene050082 | MS.gene28334 | -0.81725 | 3.64E-52 | -1.69E-46 |
| MS.gene05010 | MS.gene28334 | 0.835519 | 1.60E-56 | -1.69E-46 |
| MS.gene050170 | MS.gene28334 | 0.913482 | 5.85E-84 | -1.69E-46 |
| MS.gene050216 | MS.gene28334 | 0.812449 | 4.22E-51 | -1.69E-46 |
| MS.gene050323 | MS.gene28334 | 0.909577 | 4.88E-82 | -1.69E-46 |
| MS.gene050338 | MS.gene28334 | -0.848366 | 6.42E-60 | -1.69E-46 |
| MS.gene050444 | MS.gene28334 | 0.855038 | 8.25E-62 | -1.69E-46 |
| MS.gene050496 | MS.gene28334 | 0.880518 | 5.14E-70 | -1.69E-46 |
| MS.gene050502 | MS.gene28334 | 0.809452 | 1.88E-50 | -1.69E-46 |
| MS.gene050504 | MS.gene28334 | 0.850486 | 1.65E-60 | -1.69E-46 |
| MS.gene050518 | MS.gene28334 | 0.801313 | 9.55E-49 | -1.69E-46 |
| MS.gene050577 | MS.gene28334 | 0.836247 | 1.05E-56 | -1.69E-46 |
| MS.gene050612 | MS.gene28334 | 0.845613 | 3.64E-59 | -1.69E-46 |
| MS.gene050675 | MS.gene28334 | 0.824141 | 9.48E-54 | -1.69E-46 |
| MS.gene050697 | MS.gene28334 | 0.892955 | 9.84E-75 | -1.69E-46 |
| MS.gene050710 | MS.gene28334 | -0.81151 | 6.75E-51 | -1.69E-46 |
| MS.gene050747 | MS.gene28334 | 0.800358 | 1.50E-48 | -1.69E-46 |
| MS.gene050772 | MS.gene28334 | 0.802178 | 6.35E-49 | -1.69E-46 |
| MS.gene050809 | MS.gene28334 | -0.802396 | 5.72E-49 | -1.69E-46 |
| MS.gene05080 | MS.gene28334 | 0.837156 | 6.14E-57 | -1.69E-46 |
| MS.gene05081 | MS.gene28334 | 0.834643 | 2.66E-56 | -1.69E-46 |
| MS.gene050868 | MS.gene28334 | 0.910764 | 1.30E-82 | -1.69E-46 |
| MS.gene050871 | MS.gene28334 | 0.913075 | 9.37E-84 | -1.69E-46 |
| MS.gene050904 | MS.gene28334 | 0.860178 | 2.48E-63 | -1.69E-46 |
| MS.gene050950 | MS.gene28334 | 0.80006 | 1.72E-48 | -1.69E-46 |
| MS.gene050986 | MS.gene28334 | 0.833065 | 6.60E-56 | -1.69E-46 |
| MS.gene05104 | MS.gene28334 | -0.816152 | 6.41E-52 | -1.69E-46 |
| MS.gene051138 | MS.gene28334 | -0.843945 | 1.03E-58 | -1.69E-46 |
| MS.gene051268 | MS.gene28334 | 0.88387 | 3.11E-71 | -1.69E-46 |
| MS.gene051317 | MS.gene28334 | 0.848705 | 5.17E-60 | -1.69E-46 |
| MS.gene051439 | MS.gene28334 | -0.851541 | 8.30E-61 | -1.69E-46 |
| MS.gene051551 | MS.gene28334 | 0.810584 | 1.07E-50 | -1.69E-46 |
| MS.gene051651 | MS.gene28334 | -0.842776 | 2.10E-58 | -1.69E-46 |
| MS.gene051734 | MS.gene28334 | 0.81875 | 1.67E-52 | -1.69E-46 |
| MS.gene051838 | MS.gene28334 | 0.861266 | 1.16E-63 | -1.69E-46 |
| MS.gene051863 | MS.gene28334 | -0.847827 | 9.04E-60 | -1.69E-46 |
| MS.gene051874 | MS.gene28334 | 0.824553 | 7.58E-54 | -1.69E-46 |
| MS.gene051941 | MS.gene28334 | 0.837852 | 4.07E-57 | -1.69E-46 |
| MS.gene052066 | MS.gene28334 | 0.810517 | 1.11E-50 | -1.69E-46 |
| MS.gene052100 | MS.gene28334 | 0.850711 | 1.42E-60 | -1.69E-46 |
| MS.gene052129 | MS.gene28334 | -0.842001 | 3.38E-58 | -1.69E-46 |
| MS.gene052164 | MS.gene28334 | 0.854511 | 1.17E-61 | -1.69E-46 |
| MS.gene052383 | MS.gene28334 | -0.803463 | 3.44E-49 | -1.69E-46 |
| MS.gene052482 | MS.gene28334 | 0.832623 | 8.50E-56 | -1.69E-46 |
| MS.gene052486 | MS.gene28334 | 0.836676 | 8.14E-57 | -1.69E-46 |
| MS.gene052494 | MS.gene28334 | -0.817808 | 2.72E-52 | -1.69E-46 |
| MS.gene052503 | MS.gene28334 | 0.852714 | 3.85E-61 | -1.69E-46 |
| MS.gene052506 | MS.gene28334 | 0.810972 | 8.83E-51 | -1.69E-46 |
| MS.gene052606 | MS.gene28334 | -0.805416 | 1.35E-49 | -1.69E-46 |
| MS.gene052822 | MS.gene28334 | 0.822632 | 2.14E-53 | -1.69E-46 |
| MS.gene052823 | MS.gene28334 | 0.857386 | 1.69E-62 | -1.69E-46 |
| MS.gene052825 | MS.gene28334 | 0.856281 | 3.58E-62 | -1.69E-46 |
| MS.gene052870 | MS.gene28334 | 0.830659 | 2.59E-55 | -1.69E-46 |
| MS.gene052872 | MS.gene28334 | 0.844964 | 5.45E-59 | -1.69E-46 |
| MS.gene052966 | MS.gene28334 | 0.847549 | 1.08E-59 | -1.69E-46 |
| MS.gene052987 | MS.gene28334 | 0.807484 | 4.94E-50 | -1.69E-46 |
| MS.gene053097 | MS.gene28334 | -0.803734 | 3.03E-49 | -1.69E-46 |
| MS.gene053108 | MS.gene28334 | -0.814636 | 1.39E-51 | -1.69E-46 |
| MS.gene053203 | MS.gene28334 | 0.841774 | 3.87E-58 | -1.69E-46 |
| MS.gene053420 | MS.gene28334 | -0.845163 | 4.82E-59 | -1.69E-46 |
| MS.gene053421 | MS.gene28334 | -0.825414 | 4.75E-54 | -1.69E-46 |
| MS.gene053479 | MS.gene28334 | 0.871112 | 8.76E-67 | -1.69E-46 |
| MS.gene053480 | MS.gene28334 | 0.864571 | 1.11E-64 | -1.69E-46 |
| MS.gene053574 | MS.gene28334 | 0.809999 | 1.43E-50 | -1.69E-46 |
| MS.gene053626 | MS.gene28334 | 0.805364 | 1.38E-49 | -1.69E-46 |
| MS.gene053633 | MS.gene28334 | 0.82835 | 9.44E-55 | -1.69E-46 |
| MS.gene053776 | MS.gene28334 | -0.811082 | 8.36E-51 | -1.69E-46 |
| MS.gene053824 | MS.gene28334 | 0.871385 | 7.12E-67 | -1.69E-46 |
| MS.gene053916 | MS.gene28334 | 0.830934 | 2.22E-55 | -1.69E-46 |
| MS.gene054003 | MS.gene28334 | 0.822972 | 1.78E-53 | -1.69E-46 |
| MS.gene054270 | MS.gene28334 | -0.80006 | 1.72E-48 | -1.69E-46 |
| MS.gene054344 | MS.gene28334 | 0.813929 | 2.00E-51 | -1.69E-46 |
| MS.gene054595 | MS.gene28334 | 0.836118 | 1.13E-56 | -1.69E-46 |
| MS.gene054706 | MS.gene28334 | -0.869196 | 3.71E-66 | -1.69E-46 |
| MS.gene054707 | MS.gene28334 | -0.818001 | 2.46E-52 | -1.69E-46 |
| MS.gene05470 | MS.gene28334 | 0.873364 | 1.56E-67 | -1.69E-46 |
| MS.gene054941 | MS.gene28334 | -0.862463 | 4.98E-64 | -1.69E-46 |
| MS.gene05494 | MS.gene28334 | 0.858066 | 1.06E-62 | -1.69E-46 |
| MS.gene054954 | MS.gene28334 | 0.84916 | 3.86E-60 | -1.69E-46 |
| MS.gene055158 | MS.gene28334 | -0.811171 | 8.00E-51 | -1.69E-46 |
| MS.gene055202 | MS.gene28334 | -0.827569 | 1.46E-54 | -1.69E-46 |
| MS.gene055224 | MS.gene28334 | 0.82855 | 8.45E-55 | -1.69E-46 |
| MS.gene055362 | MS.gene28334 | 0.822558 | 2.22E-53 | -1.69E-46 |
| MS.gene055502 | MS.gene28334 | 0.832372 | 9.82E-56 | -1.69E-46 |
| MS.gene055577 | MS.gene28334 | 0.85379 | 1.89E-61 | -1.69E-46 |
| MS.gene055629 | MS.gene28334 | 0.801581 | 8.42E-49 | -1.69E-46 |
| MS.gene055741 | MS.gene28334 | 0.8024 | 5.71E-49 | -1.69E-46 |
| MS.gene055748 | MS.gene28334 | 0.860271 | 2.32E-63 | -1.69E-46 |
| MS.gene055750 | MS.gene28334 | 0.854601 | 1.10E-61 | -1.69E-46 |
| MS.gene055751 | MS.gene28334 | 0.869169 | 3.79E-66 | -1.69E-46 |
| MS.gene055776 | MS.gene28334 | 0.844629 | 6.71E-59 | -1.69E-46 |
| MS.gene05589 | MS.gene28334 | 0.924075 | 1.14E-89 | -1.69E-46 |
| MS.gene055941 | MS.gene28334 | 0.819066 | 1.41E-52 | -1.69E-46 |
| MS.gene056046 | MS.gene28334 | 0.843565 | 1.30E-58 | -1.69E-46 |
| MS.gene056166 | MS.gene28334 | 0.819512 | 1.12E-52 | -1.69E-46 |
| MS.gene056198 | MS.gene28334 | -0.839528 | 1.50E-57 | -1.69E-46 |
| MS.gene056283 | MS.gene28334 | 0.834568 | 2.78E-56 | -1.69E-46 |
| MS.gene056387 | MS.gene28334 | 0.991747 | 2.56E-189 | -1.69E-46 |
| MS.gene056446 | MS.gene28334 | 0.813938 | 1.99E-51 | -1.69E-46 |
| MS.gene056487 | MS.gene28334 | 0.81228 | 4.59E-51 | -1.69E-46 |
| MS.gene056504 | MS.gene28334 | 0.915246 | 7.39E-85 | -1.69E-46 |
| MS.gene056510 | MS.gene28334 | 0.836534 | 8.85E-57 | -1.69E-46 |
| MS.gene056583 | MS.gene28334 | -0.835771 | 1.38E-56 | -1.69E-46 |
| MS.gene056618 | MS.gene28334 | -0.878544 | 2.58E-69 | -1.69E-46 |
| MS.gene056657 | MS.gene28334 | 0.831154 | 1.96E-55 | -1.69E-46 |
| MS.gene056688 | MS.gene28334 | -0.824772 | 6.73E-54 | -1.69E-46 |
| MS.gene056692 | MS.gene28334 | 0.805267 | 1.45E-49 | -1.69E-46 |
| MS.gene056694 | MS.gene28334 | -0.834909 | 2.28E-56 | -1.69E-46 |
| MS.gene056697 | MS.gene28334 | -0.831299 | 1.81E-55 | -1.69E-46 |
| MS.gene056856 | MS.gene28334 | -0.830261 | 3.24E-55 | -1.69E-46 |
| MS.gene056857 | MS.gene28334 | -0.83884 | 2.26E-57 | -1.69E-46 |
| MS.gene056898 | MS.gene28334 | 0.807384 | 5.19E-50 | -1.69E-46 |
| MS.gene057076 | MS.gene28334 | 0.810923 | 9.05E-51 | -1.69E-46 |
| MS.gene057086 | MS.gene28334 | 0.844412 | 7.68E-59 | -1.69E-46 |
| MS.gene057367 | MS.gene28334 | -0.817522 | 3.16E-52 | -1.69E-46 |
| MS.gene057658 | MS.gene28334 | 0.826842 | 2.17E-54 | -1.69E-46 |
| MS.gene057717 | MS.gene28334 | -0.831516 | 1.60E-55 | -1.69E-46 |
| MS.gene057831 | MS.gene28334 | 0.813905 | 2.02E-51 | -1.69E-46 |
| MS.gene057856 | MS.gene28334 | 0.809804 | 1.58E-50 | -1.69E-46 |
| MS.gene057857 | MS.gene28334 | 0.852526 | 4.36E-61 | -1.69E-46 |
| MS.gene05787 | MS.gene28334 | 0.844902 | 5.67E-59 | -1.69E-46 |
| MS.gene057926 | MS.gene28334 | 0.806408 | 8.35E-50 | -1.69E-46 |
| MS.gene058068 | MS.gene28334 | -0.800682 | 1.29E-48 | -1.69E-46 |
| MS.gene058099 | MS.gene28334 | -0.829849 | 4.09E-55 | -1.69E-46 |
| MS.gene058157 | MS.gene28334 | 0.885704 | 6.46E-72 | -1.69E-46 |
| MS.gene058171 | MS.gene28334 | -0.847083 | 1.45E-59 | -1.69E-46 |
| MS.gene058173 | MS.gene28334 | -0.842025 | 3.33E-58 | -1.69E-46 |
| MS.gene058175 | MS.gene28334 | -0.85229 | 5.09E-61 | -1.69E-46 |
| MS.gene058268 | MS.gene28334 | -0.816252 | 6.08E-52 | -1.69E-46 |
| MS.gene058269 | MS.gene28334 | -0.812105 | 5.01E-51 | -1.69E-46 |
| MS.gene058334 | MS.gene28334 | -0.848315 | 6.63E-60 | -1.69E-46 |
| MS.gene058338 | MS.gene28334 | 0.823535 | 1.31E-53 | -1.69E-46 |
| MS.gene05837 | MS.gene28334 | 0.836561 | 8.71E-57 | -1.69E-46 |
| MS.gene058382 | MS.gene28334 | -0.827429 | 1.57E-54 | -1.69E-46 |
| MS.gene058418 | MS.gene28334 | -0.812363 | 4.40E-51 | -1.69E-46 |
| MS.gene058419 | MS.gene28334 | 0.823524 | 1.32E-53 | -1.69E-46 |
| MS.gene058452 | MS.gene28334 | -0.805612 | 1.23E-49 | -1.69E-46 |
| MS.gene058544 | MS.gene28334 | 0.803632 | 3.18E-49 | -1.69E-46 |
| MS.gene058773 | MS.gene28334 | 0.81669 | 4.86E-52 | -1.69E-46 |
| MS.gene058838 | MS.gene28334 | 0.847213 | 1.33E-59 | -1.69E-46 |
| MS.gene059022 | MS.gene28334 | 0.839617 | 1.42E-57 | -1.69E-46 |
| MS.gene059023 | MS.gene28334 | 0.85342 | 2.42E-61 | -1.69E-46 |
| MS.gene059045 | MS.gene28334 | -0.833766 | 4.42E-56 | -1.69E-46 |
| MS.gene05913 | MS.gene28334 | 0.830079 | 3.59E-55 | -1.69E-46 |
| MS.gene05914 | MS.gene28334 | 0.801449 | 8.96E-49 | -1.69E-46 |
| MS.gene059223 | MS.gene28334 | -0.805347 | 1.39E-49 | -1.69E-46 |
| MS.gene05926 | MS.gene28334 | -0.864094 | 1.56E-64 | -1.69E-46 |
| MS.gene059305 | MS.gene28334 | 0.824851 | 6.45E-54 | -1.69E-46 |
| MS.gene059367 | MS.gene28334 | 0.816539 | 5.25E-52 | -1.69E-46 |
| MS.gene059526 | MS.gene28334 | -0.800985 | 1.11E-48 | -1.69E-46 |
| MS.gene05960 | MS.gene28334 | -0.819658 | 1.03E-52 | -1.69E-46 |
| MS.gene059667 | MS.gene28334 | 0.855565 | 5.79E-62 | -1.69E-46 |
| MS.gene059677 | MS.gene28334 | 0.835215 | 1.91E-56 | -1.69E-46 |
| MS.gene059699 | MS.gene28334 | -0.84323 | 1.59E-58 | -1.69E-46 |
| MS.gene059701 | MS.gene28334 | -0.805892 | 1.07E-49 | -1.69E-46 |
| MS.gene059703 | MS.gene28334 | -0.854394 | 1.27E-61 | -1.69E-46 |
| MS.gene059718 | MS.gene28334 | 0.811901 | 5.55E-51 | -1.69E-46 |
| MS.gene059865 | MS.gene28334 | 0.884516 | 1.79E-71 | -1.69E-46 |
| MS.gene05995 | MS.gene28334 | 0.800741 | 1.25E-48 | -1.69E-46 |
| MS.gene06000 | MS.gene28334 | 0.903814 | 2.35E-79 | -1.69E-46 |
| MS.gene06027 | MS.gene28334 | 0.832919 | 7.18E-56 | -1.69E-46 |
| MS.gene060405 | MS.gene28334 | -0.837285 | 5.69E-57 | -1.69E-46 |
| MS.gene060595 | MS.gene28334 | -0.832847 | 7.48E-56 | -1.69E-46 |
| MS.gene060703 | MS.gene28334 | 0.822801 | 1.95E-53 | -1.69E-46 |
| MS.gene060762 | MS.gene28334 | 0.873033 | 2.01E-67 | -1.69E-46 |
| MS.gene060778 | MS.gene28334 | 0.892783 | 1.15E-74 | -1.69E-46 |
| MS.gene06077 | MS.gene28334 | 0.853456 | 2.36E-61 | -1.69E-46 |
| MS.gene060823 | MS.gene28334 | -0.8097 | 1.66E-50 | -1.69E-46 |
| MS.gene06097 | MS.gene28334 | 0.850711 | 1.42E-60 | -1.69E-46 |
| MS.gene060982 | MS.gene28334 | 0.888373 | 6.25E-73 | -1.69E-46 |
| MS.gene061044 | MS.gene28334 | -0.849532 | 3.04E-60 | -1.69E-46 |
| MS.gene061218 | MS.gene28334 | 0.837884 | 3.99E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28334.t1 | MTR_4g067320 | 99.167 | 240 | 2 | 0 | 1 | 240 | 1 | 240 | 9.11e-179 | 490 |
| MS.gene28334.t1 | MTR_4g067320 | 98.750 | 240 | 2 | 1 | 1 | 240 | 1 | 239 | 5.88e-176 | 483 |
| MS.gene28334.t1 | MTR_2g099010 | 69.262 | 244 | 70 | 3 | 1 | 240 | 1 | 243 | 8.49e-117 | 333 |
| MS.gene28334.t1 | MTR_2g099010 | 68.852 | 244 | 70 | 4 | 1 | 240 | 1 | 242 | 3.03e-114 | 327 |
| MS.gene28334.t1 | MTR_2g099010 | 61.702 | 188 | 67 | 3 | 57 | 240 | 31 | 217 | 1.71e-72 | 220 |
| MS.gene28334.t1 | MTR_2g073370 | 60.550 | 109 | 43 | 0 | 1 | 109 | 1 | 109 | 1.02e-42 | 146 |
| MS.gene28334.t1 | MTR_1g023260 | 34.799 | 273 | 133 | 8 | 1 | 240 | 1 | 261 | 1.04e-37 | 133 |
| MS.gene28334.t1 | MTR_3g117320 | 54.717 | 106 | 47 | 1 | 1 | 105 | 1 | 106 | 1.80e-35 | 126 |
| MS.gene28334.t1 | MTR_1g023260 | 57.407 | 108 | 39 | 2 | 1 | 104 | 1 | 105 | 1.89e-35 | 125 |
| MS.gene28334.t1 | MTR_4g071200 | 49.558 | 113 | 56 | 1 | 1 | 112 | 1 | 113 | 2.20e-35 | 125 |
| MS.gene28334.t1 | MTR_3g113070 | 52.830 | 106 | 48 | 1 | 1 | 104 | 1 | 106 | 1.44e-32 | 118 |
| MS.gene28334.t1 | MTR_5g021580 | 42.537 | 134 | 71 | 4 | 1 | 131 | 1 | 131 | 5.50e-25 | 97.8 |
| MS.gene28334.t1 | MTR_5g021580 | 42.537 | 134 | 71 | 4 | 1 | 131 | 1 | 131 | 5.95e-25 | 97.8 |
| MS.gene28334.t1 | MTR_7g018170 | 43.478 | 92 | 43 | 1 | 5 | 96 | 26 | 108 | 9.14e-19 | 84.7 |
| MS.gene28334.t1 | MTR_3g105710 | 43.750 | 96 | 45 | 1 | 5 | 100 | 6 | 92 | 1.87e-18 | 82.4 |
| MS.gene28334.t1 | MTR_1g013450 | 42.391 | 92 | 44 | 1 | 5 | 96 | 6 | 88 | 2.48e-18 | 82.4 |
| MS.gene28334.t1 | MTR_4g128930 | 39.130 | 92 | 47 | 1 | 5 | 96 | 22 | 104 | 1.20e-16 | 78.6 |
| MS.gene28334.t1 | MTR_7g108150 | 41.837 | 98 | 47 | 2 | 5 | 102 | 20 | 107 | 9.25e-16 | 75.9 |
| MS.gene28334.t1 | MTR_5g069480 | 35.417 | 96 | 53 | 1 | 1 | 96 | 1 | 87 | 4.67e-14 | 71.2 |
| MS.gene28334.t1 | MTR_5g069480 | 35.417 | 96 | 53 | 1 | 1 | 96 | 1 | 87 | 5.30e-14 | 70.1 |
| MS.gene28334.t1 | MTR_3g082630 | 38.542 | 96 | 49 | 2 | 1 | 96 | 1 | 86 | 6.52e-14 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28334.t1 | AT1G06040 | 62.500 | 248 | 85 | 4 | 1 | 240 | 1 | 248 | 8.69e-105 | 303 |
| MS.gene28334.t1 | AT2G31380 | 59.836 | 244 | 88 | 7 | 1 | 240 | 1 | 238 | 3.08e-92 | 271 |
| MS.gene28334.t1 | AT1G06040 | 66.071 | 168 | 51 | 3 | 1 | 162 | 1 | 168 | 2.66e-70 | 213 |
| MS.gene28334.t1 | AT1G78600 | 56.800 | 125 | 52 | 1 | 1 | 125 | 1 | 123 | 5.56e-42 | 145 |
| MS.gene28334.t1 | AT1G78600 | 56.800 | 125 | 52 | 1 | 1 | 125 | 1 | 123 | 1.19e-41 | 144 |
| MS.gene28334.t1 | AT4G10240 | 47.619 | 147 | 64 | 4 | 1 | 141 | 1 | 140 | 2.37e-36 | 126 |
| MS.gene28334.t1 | AT1G75540 | 56.522 | 115 | 47 | 2 | 1 | 112 | 1 | 115 | 5.46e-36 | 130 |
| MS.gene28334.t1 | AT4G39070 | 45.890 | 146 | 76 | 2 | 1 | 145 | 1 | 144 | 8.20e-34 | 122 |
| MS.gene28334.t1 | AT2G21320 | 50.000 | 104 | 49 | 2 | 1 | 104 | 1 | 101 | 4.25e-25 | 97.8 |
| MS.gene28334.t1 | AT4G38960 | 42.424 | 132 | 68 | 3 | 1 | 127 | 1 | 129 | 6.36e-25 | 97.4 |
| MS.gene28334.t1 | AT4G38960 | 42.424 | 132 | 68 | 3 | 1 | 127 | 1 | 129 | 6.36e-25 | 97.4 |
| MS.gene28334.t1 | AT5G15850 | 33.143 | 175 | 90 | 4 | 5 | 163 | 12 | 175 | 8.05e-20 | 87.4 |
| MS.gene28334.t1 | AT2G24790 | 43.478 | 92 | 43 | 1 | 5 | 96 | 8 | 90 | 1.20e-18 | 82.0 |
| MS.gene28334.t1 | AT2G24790 | 43.478 | 92 | 43 | 1 | 5 | 96 | 8 | 90 | 1.31e-18 | 83.2 |
| MS.gene28334.t1 | AT3G02380 | 43.478 | 92 | 43 | 1 | 5 | 96 | 16 | 98 | 1.55e-17 | 80.9 |
| MS.gene28334.t1 | AT5G15840 | 35.200 | 125 | 72 | 1 | 5 | 129 | 20 | 135 | 2.35e-17 | 79.3 |
| MS.gene28334.t1 | AT5G15840 | 35.200 | 125 | 72 | 1 | 5 | 129 | 20 | 135 | 2.40e-17 | 80.5 |
| MS.gene28334.t1 | AT4G38960 | 32.000 | 175 | 68 | 4 | 1 | 127 | 1 | 172 | 5.61e-17 | 77.4 |
| MS.gene28334.t1 | AT5G24930 | 41.667 | 96 | 47 | 1 | 5 | 100 | 6 | 92 | 7.75e-17 | 79.0 |
| MS.gene28334.t1 | AT2G47890 | 42.353 | 85 | 40 | 1 | 5 | 89 | 13 | 88 | 2.19e-14 | 71.6 |
| MS.gene28334.t1 | AT2G47890 | 42.353 | 85 | 40 | 1 | 5 | 89 | 13 | 88 | 2.23e-14 | 71.6 |
| MS.gene28334.t1 | AT2G47890 | 42.353 | 85 | 40 | 1 | 5 | 89 | 13 | 88 | 4.23e-14 | 69.7 |
| MS.gene28334.t1 | AT1G28050 | 34.653 | 101 | 57 | 1 | 2 | 102 | 6 | 97 | 3.88e-13 | 68.6 |
| MS.gene28334.t1 | AT1G68190 | 34.375 | 96 | 52 | 2 | 1 | 96 | 39 | 123 | 7.23e-13 | 67.8 |
| MS.gene28334.t1 | AT1G68190 | 34.375 | 96 | 52 | 2 | 1 | 96 | 10 | 94 | 8.09e-13 | 67.4 |
| MS.gene28334.t1 | AT1G68190 | 34.375 | 96 | 52 | 2 | 1 | 96 | 10 | 94 | 8.09e-13 | 67.4 |
| MS.gene28334.t1 | AT2G33500 | 34.000 | 100 | 57 | 1 | 3 | 102 | 10 | 100 | 1.20e-12 | 67.0 |
| MS.gene28334.t1 | AT2G33500 | 34.000 | 100 | 57 | 1 | 3 | 102 | 10 | 100 | 1.24e-12 | 67.0 |
| MS.gene28334.t1 | AT3G07650 | 37.647 | 85 | 44 | 1 | 1 | 85 | 1 | 76 | 1.39e-12 | 66.6 |
| MS.gene28334.t1 | AT3G07650 | 37.647 | 85 | 44 | 1 | 1 | 85 | 1 | 76 | 1.39e-12 | 66.6 |
| MS.gene28334.t1 | AT3G07650 | 37.647 | 85 | 44 | 1 | 1 | 85 | 1 | 76 | 1.39e-12 | 66.6 |
| MS.gene28334.t1 | AT3G07650 | 37.647 | 85 | 44 | 1 | 1 | 85 | 1 | 76 | 1.39e-12 | 66.6 |
| MS.gene28334.t1 | AT5G48250 | 32.653 | 98 | 55 | 2 | 1 | 96 | 1 | 89 | 1.95e-11 | 63.5 |
| MS.gene28334.t1 | AT5G57660 | 33.333 | 93 | 49 | 2 | 4 | 96 | 21 | 100 | 2.65e-11 | 62.8 |
Find 52 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGTAGCTGGTAGTCTTTC+TGG | 0.109250 | 4.4:+39182617 | MS.gene28334:CDS |
| TTGGGCTGTTGATGATTTCT+TGG | 0.216145 | 4.4:+39182799 | MS.gene28334:CDS |
| GATGATTTCTTGGAATTAAC+TGG | 0.278064 | 4.4:+39182809 | MS.gene28334:CDS |
| CAGAAGCAATCCATGGAGTT+TGG | 0.289917 | 4.4:+39183415 | MS.gene28334:intron |
| ACTTGGCAGATATCACATTT+AGG | 0.310599 | 4.4:-39181630 | None:intergenic |
| GTAAGACATATAAGATTTAG+AGG | 0.311347 | 4.4:-39183560 | None:intergenic |
| ACACTGCCAGCATGCATTAC+TGG | 0.340744 | 4.4:-39183523 | None:intergenic |
| TACCGGTATCCGTGTGGCTT+TGG | 0.344898 | 4.4:+39182661 | MS.gene28334:CDS |
| ACGGGAACTTGTTGCGTGTC+TGG | 0.356267 | 4.4:-39182734 | None:intergenic |
| TAAAGTTGTCTTACCTTGTC+TGG | 0.367338 | 4.4:-39182842 | None:intergenic |
| TGCCTAGTTTCGCATCCTCT+TGG | 0.378192 | 4.4:+39182780 | MS.gene28334:CDS |
| GCCTAGTTTCGCATCCTCTT+GGG | 0.385410 | 4.4:+39182781 | MS.gene28334:CDS |
| AGACTACCAGCTACATGAAT+TGG | 0.402532 | 4.4:-39182611 | None:intergenic |
| CTAAACCTTCCTGAGGAAAC+TGG | 0.421815 | 4.4:-39183477 | None:intergenic |
| TAAGATTTAGAGGCTTTGTA+AGG | 0.437114 | 4.4:-39183550 | None:intergenic |
| CGATGATGATGAGCACTTCA+TGG | 0.441777 | 4.4:+39183615 | MS.gene28334:CDS |
| CATGTGCTTTAGCCGAGATC+TGG | 0.447542 | 4.4:-39183640 | None:intergenic |
| TGGAGTTTGGAGAGCTTGAA+TGG | 0.451045 | 4.4:+39183428 | MS.gene28334:CDS |
| TGTTGCGTGTCTGGATTAGA+TGG | 0.466529 | 4.4:-39182725 | None:intergenic |
| AGCCAAAGCCACACGGATAC+CGG | 0.489165 | 4.4:-39182663 | None:intergenic |
| GCACAACAAATCACCGTAGC+AGG | 0.495596 | 4.4:-39181501 | None:intergenic |
| CTGGATTAGATGGTTCAACT+TGG | 0.497438 | 4.4:-39182715 | None:intergenic |
| TTTCAATGACCAGTTTCCTC+AGG | 0.500064 | 4.4:+39183468 | MS.gene28334:CDS |
| CTGAGGAGGAGAAACTTTGA+CGG | 0.504586 | 4.4:-39182753 | None:intergenic |
| CACTTCATGGTGCCAGATCT+CGG | 0.507917 | 4.4:+39183628 | MS.gene28334:CDS |
| TACCGGTAGCAAGGAAGCGC+TGG | 0.512715 | 4.4:-39182646 | None:intergenic |
| CTTGAATGGCTATCGGATGC+AGG | 0.516958 | 4.4:+39183442 | MS.gene28334:CDS |
| TCAACACAAAATATGAAAGC+TGG | 0.522233 | 4.4:-39182554 | None:intergenic |
| GCCCAAGAGGATGCGAAACT+AGG | 0.529539 | 4.4:-39182782 | None:intergenic |
| TCATGTCGGACTTCAATCCT+AGG | 0.531676 | 4.4:-39183589 | None:intergenic |
| AGACCGAGCACTGTTCTGTA+AGG | 0.533969 | 4.4:+39182577 | MS.gene28334:CDS |
| AGCTTGCTAGCAAGCATCAA+AGG | 0.550543 | 4.4:+39181577 | MS.gene28334:CDS |
| TTCAAGCTCTCCAAACTCCA+TGG | 0.552963 | 4.4:-39183425 | None:intergenic |
| CACCAGCGCTTCCTTGCTAC+CGG | 0.553385 | 4.4:+39182644 | MS.gene28334:CDS |
| TGGAGAGCTTGAATGGCTAT+CGG | 0.557707 | 4.4:+39183435 | MS.gene28334:CDS |
| AAACTAGGCACTTGCTGAGG+AGG | 0.565089 | 4.4:-39182767 | None:intergenic |
| CAACTTCCAGTAATGCATGC+TGG | 0.570734 | 4.4:+39183517 | MS.gene28334:CDS |
| TGAGGAGGAGAAACTTTGAC+GGG | 0.575513 | 4.4:-39182752 | None:intergenic |
| AATGACCAGTTTCCTCAGGA+AGG | 0.575639 | 4.4:+39183472 | MS.gene28334:CDS |
| CATCATCATCGTCTTCATGT+CGG | 0.589449 | 4.4:-39183603 | None:intergenic |
| CGGTAGCAAGGAAGCGCTGG+TGG | 0.597801 | 4.4:-39182643 | None:intergenic |
| GAAATCATCAACAGCCCAAG+AGG | 0.601713 | 4.4:-39182795 | None:intergenic |
| GATGAACCAATTCATGTAGC+TGG | 0.610215 | 4.4:+39182605 | MS.gene28334:CDS |
| TGGCTTTGATTCACCAGACA+AGG | 0.610663 | 4.4:+39182829 | MS.gene28334:CDS |
| GCATGCATTACTGGAAGTTG+CGG | 0.617995 | 4.4:-39183514 | None:intergenic |
| CCACACGGATACCGGTAGCA+AGG | 0.621121 | 4.4:-39182655 | None:intergenic |
| AACTAGAAGCCAAAGCCACA+CGG | 0.621527 | 4.4:-39182670 | None:intergenic |
| AGTCCTTACAGAACAGTGCT+CGG | 0.631276 | 4.4:-39182580 | None:intergenic |
| CCTTGCTACCGGTATCCGTG+TGG | 0.645262 | 4.4:+39182655 | MS.gene28334:CDS |
| GTGTGAGAAAGCTCCTGCTA+CGG | 0.646630 | 4.4:+39181488 | MS.gene28334:CDS |
| GCGAAACTAGGCACTTGCTG+AGG | 0.649769 | 4.4:-39182770 | None:intergenic |
| GCTGCAGCTAAACCTTCCTG+AGG | 0.726877 | 4.4:-39183484 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATTAAAATAATATTTT+TGG | + | chr4.4:39181774-39181793 | MS.gene28334:intron | 0.0% |
| !! | ATTAAAAAAAAAGACTTTAA+AGG | - | chr4.4:39181760-39181779 | None:intergenic | 10.0% |
| !! | CAAATATTAAAACAATATAA+AGG | - | chr4.4:39183372-39183391 | None:intergenic | 10.0% |
| !!! | AATAATATATTGAATTTTGT+AGG | + | chr4.4:39181818-39181837 | MS.gene28334:intron | 10.0% |
| !!! | CTTTATATTGTTTTAATATT+TGG | + | chr4.4:39183370-39183389 | MS.gene28334:intron | 10.0% |
| !! | AATAAATTATTATGAGAGTT+TGG | + | chr4.4:39181905-39181924 | MS.gene28334:intron | 15.0% |
| !! | ATATTAAAACAATATAAAGG+AGG | - | chr4.4:39183369-39183388 | None:intergenic | 15.0% |
| !! | CTTCTTATTCAAAATAAATA+GGG | - | chr4.4:39182282-39182301 | None:intergenic | 15.0% |
| !! | TACTATTAACATAATCATAA+AGG | - | chr4.4:39183330-39183349 | None:intergenic | 15.0% |
| !! | ATGTGCAAAAAAAAATAACA+TGG | - | chr4.4:39181960-39181979 | None:intergenic | 20.0% |
| !! | GCTTCTTATTCAAAATAAAT+AGG | - | chr4.4:39182283-39182302 | None:intergenic | 20.0% |
| !! | TGTGCAAAAAAAAATAACAT+GGG | - | chr4.4:39181959-39181978 | None:intergenic | 20.0% |
| !!! | ATTTTGTAGGATTTAAGATT+AGG | + | chr4.4:39181831-39181850 | MS.gene28334:intron | 20.0% |
| !!! | TCTGTTTATATGAATTTTTG+AGG | + | chr4.4:39183243-39183262 | MS.gene28334:intron | 20.0% |
| !!! | TTTTGTAGGATTTAAGATTA+GGG | + | chr4.4:39181832-39181851 | MS.gene28334:intron | 20.0% |
| ! | AAAATCTTCATGAATCTACA+TGG | - | chr4.4:39182003-39182022 | None:intergenic | 25.0% |
| ! | AATCAATGTCTTGGAATAAA+TGG | + | chr4.4:39182135-39182154 | MS.gene28334:intron | 25.0% |
| ! | ATAATTGTCTTTGATTGGAT+TGG | + | chr4.4:39182071-39182090 | MS.gene28334:intron | 25.0% |
| ! | ATAGATAGAAATCAATGTCT+TGG | + | chr4.4:39182126-39182145 | MS.gene28334:intron | 25.0% |
| ! | ATCCTATAGTTATAAGATGA+AGG | - | chr4.4:39182531-39182550 | None:intergenic | 25.0% |
| ! | ATGCTATAATTGTCTTTGAT+TGG | + | chr4.4:39182066-39182085 | MS.gene28334:intron | 25.0% |
| ! | CATTATTTCATTAAACGAAC+TGG | - | chr4.4:39183171-39183190 | None:intergenic | 25.0% |
| ! | GTAAGACATATAAGATTTAG+AGG | - | chr4.4:39183563-39183582 | None:intergenic | 25.0% |
| ! | TCATATAAACAGAAACCAAA+CGG | - | chr4.4:39183236-39183255 | None:intergenic | 25.0% |
| ! | TGAGAGATTATGATTTATGA+TGG | + | chr4.4:39182920-39182939 | MS.gene28334:intron | 25.0% |
| !! | AGATTATGATTTATGATGGA+GGG | + | chr4.4:39182924-39182943 | MS.gene28334:intron | 25.0% |
| !!! | AAGACATTGATTTCTATCTA+TGG | - | chr4.4:39182127-39182146 | None:intergenic | 25.0% |
| !!! | ATTTTGAATAAGAAGCATCT+AGG | + | chr4.4:39182287-39182306 | MS.gene28334:intron | 25.0% |
| AAAATTGCAATATTCGGATC+GGG | - | chr4.4:39182420-39182439 | None:intergenic | 30.0% | |
| AAATGCTAAATCTGATGTAC+TGG | - | chr4.4:39182330-39182349 | None:intergenic | 30.0% | |
| AATGCTAAATCTGATGTACT+GGG | - | chr4.4:39182329-39182348 | None:intergenic | 30.0% | |
| ATATGTCTTACAAAAAGCCT+AGG | + | chr4.4:39183572-39183591 | MS.gene28334:CDS | 30.0% | |
| CGAAACACAATTCAAAATTC+CGG | - | chr4.4:39182445-39182464 | None:intergenic | 30.0% | |
| GAAAATTGCAATATTCGGAT+CGG | - | chr4.4:39182421-39182440 | None:intergenic | 30.0% | |
| GAGATTATGATTTATGATGG+AGG | + | chr4.4:39182923-39182942 | MS.gene28334:intron | 30.0% | |
| GATGATTTCTTGGAATTAAC+TGG | + | chr4.4:39182809-39182828 | MS.gene28334:CDS | 30.0% | |
| GCAAAAAACAAAACCATACT+TGG | - | chr4.4:39181650-39181669 | None:intergenic | 30.0% | |
| TCAACACAAAATATGAAAGC+TGG | - | chr4.4:39182557-39182576 | None:intergenic | 30.0% | |
| ! | TAAGATTTAGAGGCTTTGTA+AGG | - | chr4.4:39183553-39183572 | None:intergenic | 30.0% |
| ! | TGTTGATAAATGATCTGTGA+AGG | + | chr4.4:39183019-39183038 | MS.gene28334:intron | 30.0% |
| ! | TTGCTTCTGAAAAGAAAGAA+AGG | - | chr4.4:39183404-39183423 | None:intergenic | 30.0% |
| ! | TTTTGAATTGTGTTTCGAAC+TGG | + | chr4.4:39182448-39182467 | MS.gene28334:intron | 30.0% |
| !! | ACACTTTTGATCGATTCTTT+AGG | - | chr4.4:39182252-39182271 | None:intergenic | 30.0% |
| !!! | ATGGATGATTTTACTGACTT+TGG | + | chr4.4:39182505-39182524 | MS.gene28334:intron | 30.0% |
| AATGTGATATCTGCCAAGTA+TGG | + | chr4.4:39181634-39181653 | MS.gene28334:intron | 35.0% | |
| ACTTGGCAGATATCACATTT+AGG | - | chr4.4:39181633-39181652 | None:intergenic | 35.0% | |
| CCGGTGAAAATTGCAATATT+CGG | - | chr4.4:39182426-39182445 | None:intergenic | 35.0% | |
| GGCCTTCATCTTATAACTAT+AGG | + | chr4.4:39182526-39182545 | MS.gene28334:intron | 35.0% | |
| TAAAGTTGTCTTACCTTGTC+TGG | - | chr4.4:39182845-39182864 | None:intergenic | 35.0% | |
| ! | CCGAATATTGCAATTTTCAC+CGG | + | chr4.4:39182423-39182442 | MS.gene28334:intron | 35.0% |
| ! | GTTGAAGTATTTGCTGAACA+TGG | + | chr4.4:39182486-39182505 | MS.gene28334:intron | 35.0% |
| ! | TTCTTTTCAGAAGCAATCCA+TGG | + | chr4.4:39183408-39183427 | MS.gene28334:intron | 35.0% |
| !! | TTGGCTTTTCTCATTGTCTT+TGG | - | chr4.4:39182699-39182718 | None:intergenic | 35.0% |
| AACCATATTTGCACAGGCAA+TGG | + | chr4.4:39183284-39183303 | MS.gene28334:intron | 40.0% | |
| ACTTCGAACCATATTTGCAC+AGG | + | chr4.4:39183278-39183297 | MS.gene28334:intron | 40.0% | |
| AGACTACCAGCTACATGAAT+TGG | - | chr4.4:39182614-39182633 | None:intergenic | 40.0% | |
| ATACCACTAGACTAACCCTT+AGG | + | chr4.4:39182210-39182229 | MS.gene28334:intron | 40.0% | |
| ATCTGTGAAGGAAACCAACT+TGG | + | chr4.4:39183031-39183050 | MS.gene28334:intron | 40.0% | |
| CATCATCATCGTCTTCATGT+CGG | - | chr4.4:39183606-39183625 | None:intergenic | 40.0% | |
| CCAAACTAACCCACCAAAAT+GGG | - | chr4.4:39183131-39183150 | None:intergenic | 40.0% | |
| GATGAACCAATTCATGTAGC+TGG | + | chr4.4:39182605-39182624 | MS.gene28334:CDS | 40.0% | |
| GATGATGTTGTGTTTGTAGC+AGG | + | chr4.4:39182157-39182176 | MS.gene28334:intron | 40.0% | |
| TACCACTAGACTAACCCTTA+GGG | + | chr4.4:39182211-39182230 | MS.gene28334:intron | 40.0% | |
| TACCATTGCCTGTGCAAATA+TGG | - | chr4.4:39183289-39183308 | None:intergenic | 40.0% | |
| TATTTGCACAGGCAATGGTA+AGG | + | chr4.4:39183289-39183308 | MS.gene28334:intron | 40.0% | |
| TCTGTGAAGGAAACCAACTT+GGG | + | chr4.4:39183032-39183051 | MS.gene28334:intron | 40.0% | |
| TTTCAATGACCAGTTTCCTC+AGG | + | chr4.4:39183468-39183487 | MS.gene28334:CDS | 40.0% | |
| ! | CTGGATTAGATGGTTCAACT+TGG | - | chr4.4:39182718-39182737 | None:intergenic | 40.0% |
| !! | GATTCTCTAAAGCCATTGCA+CGG | - | chr4.4:39182398-39182417 | None:intergenic | 40.0% |
| !! | TAAGGGTTAGTCTAGTGGTA+TGG | - | chr4.4:39182211-39182230 | None:intergenic | 40.0% |
| !! | TTGGGCTGTTGATGATTTCT+TGG | + | chr4.4:39182799-39182818 | MS.gene28334:CDS | 40.0% |
| AAAGCCATTGCACGGTGTAA+CGG | - | chr4.4:39182390-39182409 | None:intergenic | 45.0% | |
| AACTAGAAGCCAAAGCCACA+CGG | - | chr4.4:39182673-39182692 | None:intergenic | 45.0% | |
| AATGACCAGTTTCCTCAGGA+AGG | + | chr4.4:39183472-39183491 | MS.gene28334:CDS | 45.0% | |
| AGTCCTTACAGAACAGTGCT+CGG | - | chr4.4:39182583-39182602 | None:intergenic | 45.0% | |
| ATCGAACATGTGACCTTGAG+AGG | - | chr4.4:39183097-39183116 | None:intergenic | 45.0% | |
| ATGTCCTATTCGTGCCCTAA+GGG | - | chr4.4:39182228-39182247 | None:intergenic | 45.0% | |
| CAACTTCCAGTAATGCATGC+TGG | + | chr4.4:39183517-39183536 | MS.gene28334:CDS | 45.0% | |
| CAGAAGCAATCCATGGAGTT+TGG | + | chr4.4:39183415-39183434 | MS.gene28334:intron | 45.0% | |
| CAGGAATCGAACCCTTTCTT+CGG | + | chr4.4:39182176-39182195 | MS.gene28334:intron | 45.0% | |
| CATGTAGCTGGTAGTCTTTC+TGG | + | chr4.4:39182617-39182636 | MS.gene28334:CDS | 45.0% | |
| CTAAACCTTCCTGAGGAAAC+TGG | - | chr4.4:39183480-39183499 | None:intergenic | 45.0% | |
| CTGAGGAGGAGAAACTTTGA+CGG | - | chr4.4:39182756-39182775 | None:intergenic | 45.0% | |
| GAAATCATCAACAGCCCAAG+AGG | - | chr4.4:39182798-39182817 | None:intergenic | 45.0% | |
| GCATGCATTACTGGAAGTTG+CGG | - | chr4.4:39183517-39183536 | None:intergenic | 45.0% | |
| GCCAAACTAACCCACCAAAA+TGG | - | chr4.4:39183132-39183151 | None:intergenic | 45.0% | |
| TAACCCACCAAAATGGGTAC+CGG | - | chr4.4:39183125-39183144 | None:intergenic | 45.0% | |
| TACACACTAACTCTGCCGTT+TGG | + | chr4.4:39183218-39183237 | MS.gene28334:intron | 45.0% | |
| TCATGTCGGACTTCAATCCT+AGG | - | chr4.4:39183592-39183611 | None:intergenic | 45.0% | |
| TGAAGGAAACCAACTTGGGT+TGG | + | chr4.4:39183036-39183055 | MS.gene28334:intron | 45.0% | |
| TGAGGAGGAGAAACTTTGAC+GGG | - | chr4.4:39182755-39182774 | None:intergenic | 45.0% | |
| TGGAGAGCTTGAATGGCTAT+CGG | + | chr4.4:39183435-39183454 | MS.gene28334:CDS | 45.0% | |
| TGGAGTTTGGAGAGCTTGAA+TGG | + | chr4.4:39183428-39183447 | MS.gene28334:CDS | 45.0% | |
| TTCAAGCTCTCCAAACTCCA+TGG | - | chr4.4:39183428-39183447 | None:intergenic | 45.0% | |
| ! | CGATGATGATGAGCACTTCA+TGG | + | chr4.4:39183615-39183634 | MS.gene28334:CDS | 45.0% |
| ! | TGTTGCGTGTCTGGATTAGA+TGG | - | chr4.4:39182728-39182747 | None:intergenic | 45.0% |
| !! | AGCTTGCTAGCAAGCATCAA+AGG | + | chr4.4:39181577-39181596 | MS.gene28334:CDS | 45.0% |
| !! | GGGTTAGTTTGGCTCTATGA+AGG | + | chr4.4:39183139-39183158 | MS.gene28334:intron | 45.0% |
| !! | TGGCTTTGATTCACCAGACA+AGG | + | chr4.4:39182829-39182848 | MS.gene28334:CDS | 45.0% |
| !!! | CCCATTTTGGTGGGTTAGTT+TGG | + | chr4.4:39183128-39183147 | MS.gene28334:intron | 45.0% |
| AACCCACCAAAATGGGTACC+GGG | - | chr4.4:39183124-39183143 | None:intergenic | 50.0% | |
| AAGCCATTGCACGGTGTAAC+GGG | - | chr4.4:39182389-39182408 | None:intergenic | 50.0% | |
| ACACTGCCAGCATGCATTAC+TGG | - | chr4.4:39183526-39183545 | None:intergenic | 50.0% | |
| ACCACAAAGCCAACCCAAGT+TGG | - | chr4.4:39183048-39183067 | None:intergenic | 50.0% | |
| CATGTCCTATTCGTGCCCTA+AGG | - | chr4.4:39182229-39182248 | None:intergenic | 50.0% | |
| CTAACCCTTAGGGCACGAAT+AGG | + | chr4.4:39182221-39182240 | MS.gene28334:intron | 50.0% | |
| CTTGAATGGCTATCGGATGC+AGG | + | chr4.4:39183442-39183461 | MS.gene28334:CDS | 50.0% | |
| GCACAACAAATCACCGTAGC+AGG | - | chr4.4:39181504-39181523 | None:intergenic | 50.0% | |
| GCCTAGTTTCGCATCCTCTT+GGG | + | chr4.4:39182781-39182800 | MS.gene28334:CDS | 50.0% | |
| GGACTGAGACACCGAAGAAA+GGG | - | chr4.4:39182190-39182209 | None:intergenic | 50.0% | |
| GTCACATGTTCGATTCTCCC+CGG | + | chr4.4:39183103-39183122 | MS.gene28334:intron | 50.0% | |
| GTGTGAGAAAGCTCCTGCTA+CGG | + | chr4.4:39181488-39181507 | MS.gene28334:CDS | 50.0% | |
| TGCCTAGTTTCGCATCCTCT+TGG | + | chr4.4:39182780-39182799 | MS.gene28334:CDS | 50.0% | |
| TGGACTGAGACACCGAAGAA+AGG | - | chr4.4:39182191-39182210 | None:intergenic | 50.0% | |
| ! | AAACTAGGCACTTGCTGAGG+AGG | - | chr4.4:39182770-39182789 | None:intergenic | 50.0% |
| ! | AGACCGAGCACTGTTCTGTA+AGG | + | chr4.4:39182577-39182596 | MS.gene28334:CDS | 50.0% |
| ! | ATTCTCCCCGGTACCCATTT+TGG | + | chr4.4:39183115-39183134 | MS.gene28334:intron | 50.0% |
| ! | CACTTCATGGTGCCAGATCT+CGG | + | chr4.4:39183628-39183647 | MS.gene28334:CDS | 50.0% |
| !! | ACCAACTTGGGTTGGCTTTG+TGG | + | chr4.4:39183044-39183063 | MS.gene28334:intron | 50.0% |
| !! | TGCCCTAAGGGTTAGTCTAG+TGG | - | chr4.4:39182216-39182235 | None:intergenic | 50.0% |
| !! | TGGCTTTGTGGTGTTGGCTT+GGG | + | chr4.4:39183056-39183075 | MS.gene28334:intron | 50.0% |
| !! | TTGGCTTTGTGGTGTTGGCT+TGG | + | chr4.4:39183055-39183074 | MS.gene28334:intron | 50.0% |
| !! | TTGGGTTGGCTTTGTGGTGT+TGG | + | chr4.4:39183050-39183069 | MS.gene28334:intron | 50.0% |
| AGCCAAAGCCACACGGATAC+CGG | - | chr4.4:39182666-39182685 | None:intergenic | 55.0% | |
| CAACCCGTTACACCGTGCAA+TGG | + | chr4.4:39182383-39182402 | MS.gene28334:intron | 55.0% | |
| CTTCGAGTGTGCTCCTCTCA+AGG | + | chr4.4:39183081-39183100 | MS.gene28334:intron | 55.0% | |
| GCCCAAGAGGATGCGAAACT+AGG | - | chr4.4:39182785-39182804 | None:intergenic | 55.0% | |
| GCTGCAGCTAAACCTTCCTG+AGG | - | chr4.4:39183487-39183506 | None:intergenic | 55.0% | |
| TACCGGTATCCGTGTGGCTT+TGG | + | chr4.4:39182661-39182680 | MS.gene28334:CDS | 55.0% | |
| ! | ACCCACCAAAATGGGTACCG+GGG | - | chr4.4:39183123-39183142 | None:intergenic | 55.0% |
| ! | CTTGAGAGGAGCACACTCGA+AGG | - | chr4.4:39183083-39183102 | None:intergenic | 55.0% |
| ! | GCGAAACTAGGCACTTGCTG+AGG | - | chr4.4:39182773-39182792 | None:intergenic | 55.0% |
| !! | ACGGGAACTTGTTGCGTGTC+TGG | - | chr4.4:39182737-39182756 | None:intergenic | 55.0% |
| !! | TCCCCGGTACCCATTTTGGT+GGG | + | chr4.4:39183119-39183138 | MS.gene28334:intron | 55.0% |
| !! | TTGCACGGTGTAACGGGTTG+TGG | - | chr4.4:39182383-39182402 | None:intergenic | 55.0% |
| CACCAGCGCTTCCTTGCTAC+CGG | + | chr4.4:39182644-39182663 | MS.gene28334:CDS | 60.0% | |
| CCACACGGATACCGGTAGCA+AGG | - | chr4.4:39182658-39182677 | None:intergenic | 60.0% | |
| CCTTGCTACCGGTATCCGTG+TGG | + | chr4.4:39182655-39182674 | MS.gene28334:CDS | 60.0% | |
| ! | CTCCCCGGTACCCATTTTGG+TGG | + | chr4.4:39183118-39183137 | MS.gene28334:intron | 60.0% |
| ! | TACCGGTAGCAAGGAAGCGC+TGG | - | chr4.4:39182649-39182668 | None:intergenic | 60.0% |
| !! | CGGTAGCAAGGAAGCGCTGG+TGG | - | chr4.4:39182646-39182665 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 39181468 | 39183654 | 39181468 | ID=MS.gene28334 |
| chr4.4 | mRNA | 39181468 | 39183654 | 39181468 | ID=MS.gene28334.t1;Parent=MS.gene28334 |
| chr4.4 | exon | 39181468 | 39181650 | 39181468 | ID=MS.gene28334.t1.exon1;Parent=MS.gene28334.t1 |
| chr4.4 | CDS | 39181468 | 39181650 | 39181468 | ID=cds.MS.gene28334.t1;Parent=MS.gene28334.t1 |
| chr4.4 | exon | 39182548 | 39182850 | 39182548 | ID=MS.gene28334.t1.exon2;Parent=MS.gene28334.t1 |
| chr4.4 | CDS | 39182548 | 39182850 | 39182548 | ID=cds.MS.gene28334.t1;Parent=MS.gene28334.t1 |
| chr4.4 | exon | 39183418 | 39183654 | 39183418 | ID=MS.gene28334.t1.exon3;Parent=MS.gene28334.t1 |
| chr4.4 | CDS | 39183418 | 39183654 | 39183418 | ID=cds.MS.gene28334.t1;Parent=MS.gene28334.t1 |
| Gene Sequence |
| Protein sequence |
