AlfalfaGEDB | MS.gene35930

M. sativa cultivar XinJiangDaYe / MS.gene35930

KEGG: K01633
GO: GO:0003674 GO:0003824 GO:0004150 GO:0006082 GO:0006575 GO:0006725 GO:0006732 GO:0006760 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016829 GO:0016830 GO:0016832 GO:0019752 GO:0034641 GO:0042558 GO:0043436 GO:0043603 GO:0044237 GO:0044281 GO:0046483 GO:0051186 GO:0071704 GO:1901360 GO:1901564
PFAM: PF02152.21

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35930.t1	XP_024632417.1	96.2	132	5	0	1	132	1	132	1.60E-63	251.9

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35930.t1	Q9FM54	64.0	125	44	1	5	128	4	128	1.3e-37	157.1

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35930.t1	A0A072VAF7	96.2	132	5	0	1	132	1	132	1.2e-63	251.9

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049159	MS.gene35930	0.817297	3.55E-52	-1.69E-46
MS.gene049378	MS.gene35930	0.818654	1.75E-52	-1.69E-46
MS.gene049382	MS.gene35930	0.823374	1.43E-53	-1.69E-46
MS.gene04984	MS.gene35930	0.83324	5.98E-56	-1.69E-46
MS.gene050226	MS.gene35930	0.807319	5.36E-50	-1.69E-46
MS.gene050227	MS.gene35930	0.810428	1.16E-50	-1.69E-46
MS.gene050228	MS.gene35930	0.808219	3.45E-50	-1.69E-46
MS.gene050442	MS.gene35930	0.806777	6.98E-50	-1.69E-46
MS.gene050623	MS.gene35930	-0.820277	7.47E-53	-1.69E-46
MS.gene050629	MS.gene35930	-0.802298	6.00E-49	-1.69E-46
MS.gene050719	MS.gene35930	0.813224	2.85E-51	-1.69E-46
MS.gene050721	MS.gene35930	0.811568	6.56E-51	-1.69E-46
MS.gene050724	MS.gene35930	0.81852	1.88E-52	-1.69E-46
MS.gene050762	MS.gene35930	0.843348	1.48E-58	-1.69E-46
MS.gene050763	MS.gene35930	0.844631	6.71E-59	-1.69E-46
MS.gene050815	MS.gene35930	0.835254	1.87E-56	-1.69E-46
MS.gene050826	MS.gene35930	0.805556	1.26E-49	-1.69E-46
MS.gene051243	MS.gene35930	0.827174	1.81E-54	-1.69E-46
MS.gene051245	MS.gene35930	0.831094	2.03E-55	-1.69E-46
MS.gene051328	MS.gene35930	0.801493	8.77E-49	-1.69E-46
MS.gene051344	MS.gene35930	0.804352	2.25E-49	-1.69E-46
MS.gene051349	MS.gene35930	0.800943	1.14E-48	-1.69E-46
MS.gene051452	MS.gene35930	0.834145	3.55E-56	-1.69E-46
MS.gene051535	MS.gene35930	0.827945	1.18E-54	-1.69E-46
MS.gene051757	MS.gene35930	0.809922	1.49E-50	-1.69E-46
MS.gene052012	MS.gene35930	0.821676	3.56E-53	-1.69E-46
MS.gene052286	MS.gene35930	0.804761	1.85E-49	-1.69E-46
MS.gene052426	MS.gene35930	0.827102	1.88E-54	-1.69E-46
MS.gene052860	MS.gene35930	0.803438	3.49E-49	-1.69E-46
MS.gene052896	MS.gene35930	0.802188	6.32E-49	-1.69E-46
MS.gene053008	MS.gene35930	0.858848	6.21E-63	-1.69E-46
MS.gene054379	MS.gene35930	0.844434	7.58E-59	-1.69E-46
MS.gene054472	MS.gene35930	0.82067	6.07E-53	-1.69E-46
MS.gene054657	MS.gene35930	0.824246	8.95E-54	-1.69E-46
MS.gene054823	MS.gene35930	0.831461	1.65E-55	-1.69E-46
MS.gene054930	MS.gene35930	0.813399	2.61E-51	-1.69E-46
MS.gene05510	MS.gene35930	0.837816	4.16E-57	-1.69E-46
MS.gene05517	MS.gene35930	0.812329	4.48E-51	-1.69E-46
MS.gene055441	MS.gene35930	0.819268	1.27E-52	-1.69E-46
MS.gene055623	MS.gene35930	0.844136	9.11E-59	-1.69E-46
MS.gene055701	MS.gene35930	0.81838	2.02E-52	-1.69E-46
MS.gene056181	MS.gene35930	0.814085	1.84E-51	-1.69E-46
MS.gene056760	MS.gene35930	0.80804	3.77E-50	-1.69E-46
MS.gene056787	MS.gene35930	0.824582	7.46E-54	-1.69E-46
MS.gene057055	MS.gene35930	0.816596	5.10E-52	-1.69E-46
MS.gene057057	MS.gene35930	0.830641	2.62E-55	-1.69E-46
MS.gene057140	MS.gene35930	0.84908	4.07E-60	-1.69E-46
MS.gene05761	MS.gene35930	0.815262	1.01E-51	-1.69E-46
MS.gene057754	MS.gene35930	0.818735	1.68E-52	-1.69E-46
MS.gene057869	MS.gene35930	0.801361	9.34E-49	-1.69E-46
MS.gene058146	MS.gene35930	0.825827	3.79E-54	-1.69E-46
MS.gene058182	MS.gene35930	0.820273	7.48E-53	-1.69E-46
MS.gene058399	MS.gene35930	0.811754	5.98E-51	-1.69E-46
MS.gene058435	MS.gene35930	0.800196	1.61E-48	-1.69E-46
MS.gene058548	MS.gene35930	0.811698	6.15E-51	-1.69E-46
MS.gene058595	MS.gene35930	0.837581	4.78E-57	-1.69E-46
MS.gene058646	MS.gene35930	0.826301	2.92E-54	-1.69E-46
MS.gene058906	MS.gene35930	0.827312	1.68E-54	-1.69E-46
MS.gene059124	MS.gene35930	0.800998	1.11E-48	-1.69E-46
MS.gene059283	MS.gene35930	0.808848	2.53E-50	-1.69E-46
MS.gene059713	MS.gene35930	0.800438	1.44E-48	-1.69E-46
MS.gene05979	MS.gene35930	0.808846	2.53E-50	-1.69E-46
MS.gene060084	MS.gene35930	0.843378	1.45E-58	-1.69E-46
MS.gene06010	MS.gene35930	0.813511	2.47E-51	-1.69E-46
MS.gene060296	MS.gene35930	0.839286	1.73E-57	-1.69E-46
MS.gene060297	MS.gene35930	0.815081	1.11E-51	-1.69E-46
MS.gene060322	MS.gene35930	0.821969	3.04E-53	-1.69E-46
MS.gene060637	MS.gene35930	0.805367	1.38E-49	-1.69E-46
MS.gene060683	MS.gene35930	0.83321	6.08E-56	-1.69E-46
MS.gene060685	MS.gene35930	0.827165	1.82E-54	-1.69E-46
MS.gene060802	MS.gene35930	0.851831	6.87E-61	-1.69E-46
MS.gene060803	MS.gene35930	0.831155	1.96E-55	-1.69E-46
MS.gene060869	MS.gene35930	0.808473	3.04E-50	-1.69E-46
MS.gene060870	MS.gene35930	0.82783	1.26E-54	-1.69E-46
MS.gene060942	MS.gene35930	0.806177	9.34E-50	-1.69E-46
MS.gene060998	MS.gene35930	0.834923	2.26E-56	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35930.t1	MTR_2g088720	96.212	132	5	1	132	1	132	2.65e-89	255
MS.gene35930.t1	MTR_2g088720	96.212	132	5	1	132	12	143	3.32e-89	255
MS.gene35930.t1	MTR_7g106600	83.077	130	22	4	133	1	130	1.43e-76	223
MS.gene35930.t1	MTR_7g106580	78.947	133	28	1	133	1	133	1.97e-73	215

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35930.t1	AT5G62980	63.492	126	45	1	5	129	4	129	5.87e-52	160
MS.gene35930.t1	AT5G62980	63.492	126	45	1	5	129	4	129	5.87e-52	160
MS.gene35930.t1	AT3G11750	62.810	121	44	1	10	129	21	141	9.45e-51	158
MS.gene35930.t1	AT3G21730	52.500	120	56	1	11	129	40	159	5.10e-41	134
MS.gene35930.t1	AT3G21730	46.032	63	33	1	68	129	13	75	1.50e-13	62.0

Find 0 sgRNAs with CRISPR-Local

Find 36 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	ATAGCTAAGAAAGTTATTGA+AGG	+	15126:12134-12153	MS.gene35930:CDS	25.0%
	TAAAATTGCAATCGCTACTT+TGG	+	15126:12190-12209	MS.gene35930:CDS	30.0%
!	AAGTAGCGATTGCAATTTTA+TGG	-	15126:12190-12209	MS.gene35930:intergenic	30.0%
!	AGTAGCGATTGCAATTTTAT+GGG	-	15126:12189-12208	MS.gene35930:intergenic	30.0%
!	TTGACTTTCTATGGTTTTCA+CGG	+	15126:11984-12003	MS.gene35930:CDS	30.0%
!!	AAGGTGTTGATGCATTAATA+GGG	+	15126:11937-11956	MS.gene35930:CDS	30.0%
	GGAGACAAACTTATTCTAAG+GGG	+	15126:11960-11979	MS.gene35930:CDS	35.0%
	GGGAGACAAACTTATTCTAA+GGG	+	15126:11959-11978	MS.gene35930:CDS	35.0%
!	AAGTTATCAGATTTTCCAGC+TGG	-	15126:12080-12099	MS.gene35930:intergenic	35.0%
!!	AGGTGTTGATGCATTAATAG+GGG	+	15126:11938-11957	MS.gene35930:CDS	35.0%
!!	GAAGGTGTTGATGCATTAAT+AGG	+	15126:11936-11955	MS.gene35930:CDS	35.0%
	GGGGAGACAAACTTATTCTA+AGG	+	15126:11958-11977	MS.gene35930:CDS	40.0%
	TCAACGCCTAAGTAATCAAC+CGG	-	15126:12281-12300	MS.gene35930:intergenic	40.0%
!	CTAAGGGGATTGACTTTCTA+TGG	+	15126:11975-11994	MS.gene35930:CDS	40.0%
!!	GGTGTTGATGCATTAATAGG+GGG	+	15126:11939-11958	MS.gene35930:CDS	40.0%
	ACAGAAGTTTGTGGTAGACG+TGG	+	15126:12034-12053	MS.gene35930:CDS	45.0%
	GATATCTGCTGTTCGTGTGA+AGG	+	15126:12226-12245	MS.gene35930:CDS	45.0%
!	TGGTTTTCACGGAGCAATAG+CGG	+	15126:11995-12014	MS.gene35930:CDS	45.0%
!!	TCAAAACCTTCTGGAGTCAG+TGG	+	15126:12163-12182	MS.gene35930:CDS	45.0%
	AAAGCCTCATGTGGCGATTC+AGG	+	15126:12253-12272	MS.gene35930:CDS	50.0%
	AAGCCTCATGTGGCGATTCA+GGG	+	15126:12254-12273	MS.gene35930:CDS	50.0%
	AGGACCAGCTCAAAACCTTC+TGG	+	15126:12154-12173	MS.gene35930:CDS	50.0%
	CAGGGTCCGGTTGATTACTT+AGG	+	15126:12272-12291	MS.gene35930:CDS	50.0%
	GAAGGTTGGAAAGCCTCATG+TGG	+	15126:12244-12263	MS.gene35930:CDS	50.0%
	GACGCTAGGACAGAAGTTTG+TGG	+	15126:12025-12044	MS.gene35930:CDS	50.0%
	TCTGCTGTTCGTGTGAAGGT+TGG	+	15126:12230-12249	MS.gene35930:CDS	50.0%
	TGGTTGGATCTCAAACCAGC+TGG	+	15126:12062-12081	MS.gene35930:CDS	50.0%
	TTGTGGTAGACGTGGATGCT+TGG	+	15126:12042-12061	MS.gene35930:CDS	50.0%
!	ACGGAGCAATAGCGGAAGAA+AGG	+	15126:12003-12022	MS.gene35930:CDS	50.0%
!	ATAGCGGAAGAAAGGACGCT+AGG	+	15126:12011-12030	MS.gene35930:CDS	50.0%
!!	GTTGAGATTCTGAGACGCAG+AGG	+	15126:12296-12315	MS.gene35930:CDS	50.0%
!!!	GACTCCAGAAGGTTTTGAGC+TGG	-	15126:12161-12180	MS.gene35930:intergenic	50.0%
	GGTAGACGTGGATGCTTGGT+TGG	+	15126:12046-12065	MS.gene35930:CDS	55.0%
	TCATGTGGCGATTCAGGGTC+CGG	+	15126:12259-12278	MS.gene35930:CDS	55.0%
!!	TATGGGCCACTGACTCCAGA+AGG	-	15126:12172-12191	MS.gene35930:intergenic	55.0%
	GGACCCTGAATCGCCACATG+AGG	-	15126:12260-12279	MS.gene35930:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
15126	gene	11933	12334	11933	ID=MS.gene35930
15126	mRNA	11933	12334	11933	ID=MS.gene35930.t1;Parent=MS.gene35930
15126	exon	11933	12334	11933	ID=MS.gene35930.t1.exon1;Parent=MS.gene35930.t1
15126	CDS	11933	12334	11933	ID=cds.MS.gene35930.t1;Parent=MS.gene35930.t1

Gene Sequence

>MS.gene35930

ATGGAAGGTGTTGATGCATTAATAGGGGGAGACAAACTTATTCTAAGGGGATTGACTTTCTATGGTTTTCACGGAGCAATAGCGGAAGAAAGGACGCTAGGACAGAAGTTTGTGGTAGACGTGGATGCTTGGTTGGATCTCAAACCAGCTGGAAAATCTGATAACTTGTCTGATTCTTTTAGTTACGCTGAAATATATCTTATAGCTAAGAAAGTTATTGAAGGACCAGCTCAAAACCTTCTGGAGTCAGTGGCCCATAAAATTGCAATCGCTACTTTGGAAGTTCAGAAAAAGATATCTGCTGTTCGTGTGAAGGTTGGAAAGCCTCATGTGGCGATTCAGGGTCCGGTTGATTACTTAGGCGTTGAGATTCTGAGACGCAGAGGCGATTTGACAGACTAG

Protein sequence

>MS.gene35930.t1

MEGVDALIGGDKLILRGLTFYGFHGAIAEERTLGQKFVVDVDAWLDLKPAGKSDNLSDSFSYAEIYLIAKKVIEGPAQNLLESVAHKIAIATLEVQKKISAVRVKVGKPHVAIQGPVDYLGVEILRRRGDLTD