Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066192.t1 | KEH38231.1 | 95.5 | 267 | 9 | 1 | 1 | 264 | 1 | 267 | 5.10E-141 | 510.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066192.t1 | A0A072V9C5 | 95.5 | 267 | 9 | 1 | 1 | 264 | 1 | 267 | 3.7e-141 | 510.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene066192 | 0.816768 | 4.66E-52 | -1.69E-46 |
| MS.gene049217 | MS.gene066192 | 0.832503 | 9.11E-56 | -1.69E-46 |
| MS.gene049222 | MS.gene066192 | 0.829699 | 4.45E-55 | -1.69E-46 |
| MS.gene049285 | MS.gene066192 | 0.841292 | 5.19E-58 | -1.69E-46 |
| MS.gene049320 | MS.gene066192 | 0.833186 | 6.16E-56 | -1.69E-46 |
| MS.gene049609 | MS.gene066192 | 0.802982 | 4.33E-49 | -1.69E-46 |
| MS.gene049633 | MS.gene066192 | 0.802968 | 4.36E-49 | -1.69E-46 |
| MS.gene05010 | MS.gene066192 | 0.807115 | 5.92E-50 | -1.69E-46 |
| MS.gene050163 | MS.gene066192 | 0.818013 | 2.45E-52 | -1.69E-46 |
| MS.gene050165 | MS.gene066192 | 0.813257 | 2.81E-51 | -1.69E-46 |
| MS.gene050333 | MS.gene066192 | 0.803133 | 4.03E-49 | -1.69E-46 |
| MS.gene050504 | MS.gene066192 | 0.83309 | 6.51E-56 | -1.69E-46 |
| MS.gene050518 | MS.gene066192 | 0.806623 | 7.52E-50 | -1.69E-46 |
| MS.gene050612 | MS.gene066192 | 0.825559 | 4.39E-54 | -1.69E-46 |
| MS.gene050675 | MS.gene066192 | 0.824428 | 8.11E-54 | -1.69E-46 |
| MS.gene050699 | MS.gene066192 | 0.814394 | 1.58E-51 | -1.69E-46 |
| MS.gene050772 | MS.gene066192 | 0.815148 | 1.07E-51 | -1.69E-46 |
| MS.gene05080 | MS.gene066192 | 0.806594 | 7.63E-50 | -1.69E-46 |
| MS.gene050868 | MS.gene066192 | 0.819273 | 1.27E-52 | -1.69E-46 |
| MS.gene050871 | MS.gene066192 | 0.817197 | 3.74E-52 | -1.69E-46 |
| MS.gene050986 | MS.gene066192 | 0.812242 | 4.68E-51 | -1.69E-46 |
| MS.gene051268 | MS.gene066192 | 0.809614 | 1.73E-50 | -1.69E-46 |
| MS.gene051551 | MS.gene066192 | 0.802668 | 5.03E-49 | -1.69E-46 |
| MS.gene051810 | MS.gene066192 | 0.815786 | 7.73E-52 | -1.69E-46 |
| MS.gene052379 | MS.gene066192 | 0.802764 | 4.81E-49 | -1.69E-46 |
| MS.gene052872 | MS.gene066192 | 0.800391 | 1.47E-48 | -1.69E-46 |
| MS.gene052966 | MS.gene066192 | 0.805669 | 1.19E-49 | -1.69E-46 |
| MS.gene053203 | MS.gene066192 | 0.814822 | 1.27E-51 | -1.69E-46 |
| MS.gene053213 | MS.gene066192 | 0.819549 | 1.10E-52 | -1.69E-46 |
| MS.gene053286 | MS.gene066192 | 0.822141 | 2.78E-53 | -1.69E-46 |
| MS.gene053574 | MS.gene066192 | 0.816585 | 5.13E-52 | -1.69E-46 |
| MS.gene053632 | MS.gene066192 | 0.802694 | 4.97E-49 | -1.69E-46 |
| MS.gene053824 | MS.gene066192 | 0.809558 | 1.78E-50 | -1.69E-46 |
| MS.gene054003 | MS.gene066192 | 0.809171 | 2.16E-50 | -1.69E-46 |
| MS.gene054595 | MS.gene066192 | 0.802655 | 5.06E-49 | -1.69E-46 |
| MS.gene054600 | MS.gene066192 | 0.814612 | 1.41E-51 | -1.69E-46 |
| MS.gene054642 | MS.gene066192 | 0.841493 | 4.60E-58 | -1.69E-46 |
| MS.gene054954 | MS.gene066192 | 0.835779 | 1.38E-56 | -1.69E-46 |
| MS.gene055206 | MS.gene066192 | 0.806013 | 1.01E-49 | -1.69E-46 |
| MS.gene055362 | MS.gene066192 | 0.828429 | 9.03E-55 | -1.69E-46 |
| MS.gene055502 | MS.gene066192 | 0.846378 | 2.26E-59 | -1.69E-46 |
| MS.gene055577 | MS.gene066192 | 0.825855 | 3.73E-54 | -1.69E-46 |
| MS.gene055722 | MS.gene066192 | 0.818992 | 1.47E-52 | -1.69E-46 |
| MS.gene055941 | MS.gene066192 | 0.80202 | 6.84E-49 | -1.69E-46 |
| MS.gene056504 | MS.gene066192 | 0.806127 | 9.57E-50 | -1.69E-46 |
| MS.gene056510 | MS.gene066192 | 0.842554 | 2.41E-58 | -1.69E-46 |
| MS.gene056657 | MS.gene066192 | 0.836599 | 8.51E-57 | -1.69E-46 |
| MS.gene057416 | MS.gene066192 | 0.800513 | 1.39E-48 | -1.69E-46 |
| MS.gene057926 | MS.gene066192 | 0.800325 | 1.52E-48 | -1.69E-46 |
| MS.gene058419 | MS.gene066192 | 0.821072 | 4.90E-53 | -1.69E-46 |
| MS.gene058544 | MS.gene066192 | 0.805463 | 1.32E-49 | -1.69E-46 |
| MS.gene058773 | MS.gene066192 | 0.845337 | 4.33E-59 | -1.69E-46 |
| MS.gene059022 | MS.gene066192 | 0.836823 | 7.47E-57 | -1.69E-46 |
| MS.gene059023 | MS.gene066192 | 0.815665 | 8.23E-52 | -1.69E-46 |
| MS.gene05913 | MS.gene066192 | 0.827733 | 1.33E-54 | -1.69E-46 |
| MS.gene059677 | MS.gene066192 | 0.827895 | 1.21E-54 | -1.69E-46 |
| MS.gene059718 | MS.gene066192 | 0.83758 | 4.78E-57 | -1.69E-46 |
| MS.gene059865 | MS.gene066192 | 0.828029 | 1.13E-54 | -1.69E-46 |
| MS.gene060482 | MS.gene066192 | 0.812307 | 4.53E-51 | -1.69E-46 |
| MS.gene060703 | MS.gene066192 | 0.819561 | 1.09E-52 | -1.69E-46 |
| MS.gene060762 | MS.gene066192 | 0.821298 | 4.35E-53 | -1.69E-46 |
| MS.gene060982 | MS.gene066192 | 0.804824 | 1.79E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene36105 | MS.gene066192 | PPI |
| MS.gene038976 | MS.gene066192 | PPI |
| MS.gene045724 | MS.gene066192 | PPI |
| MS.gene069717 | MS.gene066192 | PPI |
| MS.gene42746 | MS.gene066192 | PPI |
| MS.gene068946 | MS.gene066192 | PPI |
| MS.gene42747 | MS.gene066192 | PPI |
| MS.gene62495 | MS.gene066192 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066192.t1 | MTR_2g064370 | 95.506 | 267 | 9 | 1 | 1 | 264 | 1 | 267 | 0.0 | 513 |
| MS.gene066192.t1 | MTR_8g046460 | 71.654 | 254 | 66 | 3 | 14 | 264 | 18 | 268 | 2.72e-133 | 377 |
| MS.gene066192.t1 | MTR_8g028425 | 57.792 | 154 | 63 | 1 | 75 | 226 | 92 | 245 | 9.71e-65 | 202 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066192.t1 | AT1G79510 | 65.091 | 275 | 85 | 6 | 1 | 264 | 1 | 275 | 6.50e-120 | 343 |
| MS.gene066192.t1 | AT1G79510 | 65.091 | 275 | 85 | 6 | 1 | 264 | 1 | 275 | 6.50e-120 | 343 |
| MS.gene066192.t1 | AT1G16320 | 59.489 | 274 | 100 | 6 | 1 | 264 | 1 | 273 | 4.11e-110 | 319 |
| MS.gene066192.t1 | AT2G46220 | 55.414 | 157 | 68 | 1 | 72 | 226 | 81 | 237 | 5.61e-65 | 203 |
Find 60 sgRNAs with CRISPR-Local
Find 91 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGTACAAATTGATCTTC+TGG | 0.216595 | 2.2:+25376378 | MS.gene066192:CDS |
| GACCCTTTGAACACATTTAC+TGG | 0.221962 | 2.2:+25376350 | MS.gene066192:CDS |
| AGGCACTTCAAAGTATAAAT+TGG | 0.231544 | 2.2:+25376547 | MS.gene066192:CDS |
| TATTAAACCAGTTTCAGTTT+TGG | 0.296641 | 2.2:+25376631 | MS.gene066192:CDS |
| AGAAAATGTGAAGTAGGTTT+TGG | 0.326406 | 2.2:-25375569 | None:intergenic |
| TTCATGGATAACTTTATATA+AGG | 0.327641 | 2.2:+25376724 | MS.gene066192:CDS |
| TTCTGGGCATTGAGGTTTCA+TGG | 0.332313 | 2.2:+25376395 | MS.gene066192:CDS |
| TAACTTTATATAAGGCAGTT+AGG | 0.342291 | 2.2:+25376732 | MS.gene066192:CDS |
| AGGGCGTGCCGCGTGTCCCT+TGG | 0.359335 | 2.2:+25376504 | MS.gene066192:CDS |
| TTGGTGAAGAGGTTTGTCTT+TGG | 0.362955 | 2.2:-25375534 | None:intergenic |
| GAGTTGGGAGATAAGGTTGT+AGG | 0.369415 | 2.2:-25375502 | None:intergenic |
| ACAAAATCCAAAACTGAAAC+TGG | 0.373146 | 2.2:-25376638 | None:intergenic |
| GGGAGATAAGGTTGTAGGTT+TGG | 0.374951 | 2.2:-25375497 | None:intergenic |
| GGGCGTGCCGCGTGTCCCTT+GGG | 0.391041 | 2.2:+25376505 | MS.gene066192:CDS |
| CGAAGAATGTGATATGGATT+AGG | 0.391674 | 2.2:+25376471 | MS.gene066192:CDS |
| TTTGATTGAGTTGGGAGATA+AGG | 0.392649 | 2.2:-25375509 | None:intergenic |
| ATGGATTAGGTGGAAACTTA+AGG | 0.394506 | 2.2:+25376484 | MS.gene066192:CDS |
| TGGAGTTTGAAGGGTGGCTA+AGG | 0.408366 | 2.2:-25375624 | None:intergenic |
| AAAGTACAAATTGATCTTCT+GGG | 0.411012 | 2.2:+25376379 | MS.gene066192:CDS |
| TGGATGTCTACTCTTCTTCA+TGG | 0.415651 | 2.2:+25376708 | MS.gene066192:CDS |
| TTGACATAGAATTCATCCTT+TGG | 0.425313 | 2.2:-25375692 | None:intergenic |
| AATGTAGGGTTTGGACTAGC+AGG | 0.427331 | 2.2:-25376671 | None:intergenic |
| AACTTTATATAAGGCAGTTA+GGG | 0.433549 | 2.2:+25376733 | MS.gene066192:CDS |
| AGGTCTTTGATGAAGATCAT+AGG | 0.436047 | 2.2:-25375752 | None:intergenic |
| TGTTTATCTTGAACACTTGA+CGG | 0.437362 | 2.2:-25375665 | None:intergenic |
| AACCTTCGAAGAATGTGATA+TGG | 0.437736 | 2.2:+25376465 | MS.gene066192:CDS |
| TGAACATAAAGTTGATAACT+TGG | 0.441163 | 2.2:+25376589 | MS.gene066192:CDS |
| TGGATTAGGTGGAAACTTAA+GGG | 0.463830 | 2.2:+25376485 | MS.gene066192:CDS |
| ATTCCAGTAAATGTGTTCAA+AGG | 0.467787 | 2.2:-25376353 | None:intergenic |
| AGAAGAAGAATCAGATGAAG+TGG | 0.472139 | 2.2:-25375600 | None:intergenic |
| TTCCAGTAAATGTGTTCAAA+GGG | 0.481927 | 2.2:-25376352 | None:intergenic |
| ACCTCAATTATGATATCTAT+AGG | 0.485916 | 2.2:+25375771 | MS.gene066192:CDS |
| AGGGAGACTTTGAAACAAGA+AGG | 0.486403 | 2.2:+25376752 | MS.gene066192:CDS |
| GATACAAGAAAATGTGAAGT+AGG | 0.489505 | 2.2:-25375575 | None:intergenic |
| GGAGTTTGAAGGGTGGCTAA+GGG | 0.505819 | 2.2:-25375623 | None:intergenic |
| AATTGATCTTCTGGGCATTG+AGG | 0.508643 | 2.2:+25376387 | MS.gene066192:CDS |
| GAAGCTAAAGGAGAATTTCA+AGG | 0.512138 | 2.2:+25376527 | MS.gene066192:CDS |
| AAGTATAAATTGGACAAGAA+TGG | 0.514460 | 2.2:+25376557 | MS.gene066192:CDS |
| ACCTATAGATATCATAATTG+AGG | 0.529058 | 2.2:-25375772 | None:intergenic |
| GATGAATTCTATGTCAACCT+TGG | 0.529105 | 2.2:+25375698 | MS.gene066192:CDS |
| CGTGTCCCTTGGGAAGCTAA+AGG | 0.549445 | 2.2:+25376515 | MS.gene066192:CDS |
| AATTCTCCTTTAGCTTCCCA+AGG | 0.554730 | 2.2:-25376521 | None:intergenic |
| TTGTGAAGTTGGAGTTTGAA+GGG | 0.561912 | 2.2:-25375633 | None:intergenic |
| CTTGTGAAGTTGGAGTTTGA+AGG | 0.564715 | 2.2:-25375634 | None:intergenic |
| ATAGATAATACTTACGAGCA+TGG | 0.565339 | 2.2:-25376803 | None:intergenic |
| ATCCATATCACATTCTTCGA+AGG | 0.567194 | 2.2:-25376467 | None:intergenic |
| GGTGTGTTAACTTGTGAAGT+TGG | 0.574807 | 2.2:-25375644 | None:intergenic |
| AGAATGTGATATGGATTAGG+TGG | 0.583307 | 2.2:+25376474 | MS.gene066192:CDS |
| GAAGAAGAGTAGACATCCAC+AGG | 0.583593 | 2.2:-25376704 | None:intergenic |
| GGGAGACTTTGAAACAAGAA+GGG | 0.595464 | 2.2:+25376753 | MS.gene066192:CDS |
| GAGTTCTAACAGCAAGTCCA+AGG | 0.595497 | 2.2:-25375715 | None:intergenic |
| GATGAAAGAGTTTGGTGAAG+AGG | 0.606204 | 2.2:-25375545 | None:intergenic |
| GGGAGTTTGCTACCACAAGA+TGG | 0.611323 | 2.2:+25376773 | MS.gene066192:CDS |
| ATTCTCCTTTAGCTTCCCAA+GGG | 0.617667 | 2.2:-25376520 | None:intergenic |
| ATGTAGGGTTTGGACTAGCA+GGG | 0.639151 | 2.2:-25376670 | None:intergenic |
| TTAGCTTCCCAAGGGACACG+CGG | 0.642123 | 2.2:-25376512 | None:intergenic |
| CACTTGATGTATATAGAGTG+TGG | 0.642892 | 2.2:+25376441 | MS.gene066192:CDS |
| TCAAGATAAACAGCTTCCAA+AGG | 0.645111 | 2.2:+25375676 | MS.gene066192:CDS |
| CATGGAGCTAGACCATCTTG+TGG | 0.685164 | 2.2:-25376785 | None:intergenic |
| TGAAGTTGGAGTTTGAAGGG+TGG | 0.695576 | 2.2:-25375630 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAGATGTTATAAGAAA+TGG | - | chr2.2:25375825-25375844 | None:intergenic | 15.0% |
| !! | TATCAATAGTTTAATACTAT+TGG | - | chr2.2:25376167-25376186 | None:intergenic | 15.0% |
| !! | TATTTAATTGTACTATATAC+AGG | + | chr2.2:25375944-25375963 | MS.gene066192:intron | 15.0% |
| !! | GTTTATAAAATGAGCTTATT+AGG | + | chr2.2:25376259-25376278 | MS.gene066192:intron | 20.0% |
| !! | TGTTAAATAGGCTTATAATA+GGG | - | chr2.2:25375895-25375914 | None:intergenic | 20.0% |
| !! | TTACACATTAAGTGTTAAAT+AGG | - | chr2.2:25375907-25375926 | None:intergenic | 20.0% |
| !! | TTCATGGATAACTTTATATA+AGG | + | chr2.2:25376724-25376743 | MS.gene066192:CDS | 20.0% |
| !!! | GAAACTGGTTTAATATTTTT+GGG | - | chr2.2:25376626-25376645 | None:intergenic | 20.0% |
| !!! | TGAAACTGGTTTAATATTTT+TGG | - | chr2.2:25376627-25376646 | None:intergenic | 20.0% |
| !!! | TGAAATTTGATCAATTTTCA+GGG | + | chr2.2:25376310-25376329 | MS.gene066192:intron | 20.0% |
| !!! | TTATTAGGTTGTGAATTTTA+AGG | + | chr2.2:25376274-25376293 | MS.gene066192:intron | 20.0% |
| !!! | TTGAAATTTGATCAATTTTC+AGG | + | chr2.2:25376309-25376328 | MS.gene066192:intron | 20.0% |
| ! | AAAGTACAAATTGATCTTCT+GGG | + | chr2.2:25376379-25376398 | MS.gene066192:CDS | 25.0% |
| ! | AACTTTATATAAGGCAGTTA+GGG | + | chr2.2:25376733-25376752 | MS.gene066192:CDS | 25.0% |
| ! | AAGTATAAATTGGACAAGAA+TGG | + | chr2.2:25376557-25376576 | MS.gene066192:CDS | 25.0% |
| ! | ACCTATAGATATCATAATTG+AGG | - | chr2.2:25375775-25375794 | None:intergenic | 25.0% |
| ! | ACCTCAATTATGATATCTAT+AGG | + | chr2.2:25375771-25375790 | MS.gene066192:CDS | 25.0% |
| ! | GTGTTAAATAGGCTTATAAT+AGG | - | chr2.2:25375896-25375915 | None:intergenic | 25.0% |
| ! | TAACTTTATATAAGGCAGTT+AGG | + | chr2.2:25376732-25376751 | MS.gene066192:CDS | 25.0% |
| ! | TTATAAGAAATGGTGAAATG+AGG | - | chr2.2:25375815-25375834 | None:intergenic | 25.0% |
| !! | AAAAGTACAAATTGATCTTC+TGG | + | chr2.2:25376378-25376397 | MS.gene066192:CDS | 25.0% |
| !! | TATTAAACCAGTTTCAGTTT+TGG | + | chr2.2:25376631-25376650 | MS.gene066192:CDS | 25.0% |
| !!! | AGACAAGTTTTTTTATGCTT+AGG | + | chr2.2:25376050-25376069 | MS.gene066192:intron | 25.0% |
| !!! | TGAACATAAAGTTGATAACT+TGG | + | chr2.2:25376589-25376608 | MS.gene066192:CDS | 25.0% |
| AATTGTACTATATACAGGAC+CGG | + | chr2.2:25375949-25375968 | MS.gene066192:intron | 30.0% | |
| ACAAAATCCAAAACTGAAAC+TGG | - | chr2.2:25376641-25376660 | None:intergenic | 30.0% | |
| AGGCACTTCAAAGTATAAAT+TGG | + | chr2.2:25376547-25376566 | MS.gene066192:CDS | 30.0% | |
| ATTCCAGTAAATGTGTTCAA+AGG | - | chr2.2:25376356-25376375 | None:intergenic | 30.0% | |
| GATACAAGAAAATGTGAAGT+AGG | - | chr2.2:25375578-25375597 | None:intergenic | 30.0% | |
| TGTTTATCTTGAACACTTGA+CGG | - | chr2.2:25375668-25375687 | None:intergenic | 30.0% | |
| TTCCAGTAAATGTGTTCAAA+GGG | - | chr2.2:25376355-25376374 | None:intergenic | 30.0% | |
| TTGACATAGAATTCATCCTT+TGG | - | chr2.2:25375695-25375714 | None:intergenic | 30.0% | |
| ! | AGAAAATGTGAAGTAGGTTT+TGG | - | chr2.2:25375572-25375591 | None:intergenic | 30.0% |
| ! | CAGGGATGATATAACATTTT+TGG | + | chr2.2:25376328-25376347 | MS.gene066192:intron | 30.0% |
| !!! | CTTTGGATTTTGATTGAGTT+GGG | - | chr2.2:25375520-25375539 | None:intergenic | 30.0% |
| !!! | TCTTTGGATTTTGATTGAGT+TGG | - | chr2.2:25375521-25375540 | None:intergenic | 30.0% |
| AACCTTCGAAGAATGTGATA+TGG | + | chr2.2:25376465-25376484 | MS.gene066192:CDS | 35.0% | |
| AGAAGAAGAATCAGATGAAG+TGG | - | chr2.2:25375603-25375622 | None:intergenic | 35.0% | |
| AGGTCTTTGATGAAGATCAT+AGG | - | chr2.2:25375755-25375774 | None:intergenic | 35.0% | |
| ATCCATATCACATTCTTCGA+AGG | - | chr2.2:25376470-25376489 | None:intergenic | 35.0% | |
| CACTTGATGTATATAGAGTG+TGG | + | chr2.2:25376441-25376460 | MS.gene066192:CDS | 35.0% | |
| CGAAGAATGTGATATGGATT+AGG | + | chr2.2:25376471-25376490 | MS.gene066192:CDS | 35.0% | |
| GAAGCTAAAGGAGAATTTCA+AGG | + | chr2.2:25376527-25376546 | MS.gene066192:CDS | 35.0% | |
| GATGAATTCTATGTCAACCT+TGG | + | chr2.2:25375698-25375717 | MS.gene066192:CDS | 35.0% | |
| TCAAGATAAACAGCTTCCAA+AGG | + | chr2.2:25375676-25375695 | MS.gene066192:CDS | 35.0% | |
| TTATGCTTAGGAGTTGAACT+TGG | + | chr2.2:25376062-25376081 | MS.gene066192:intron | 35.0% | |
| TTGTGAAGTTGGAGTTTGAA+GGG | - | chr2.2:25375636-25375655 | None:intergenic | 35.0% | |
| ! | TCCAAACCCTACATTTTTGT+GGG | + | chr2.2:25376679-25376698 | MS.gene066192:CDS | 35.0% |
| ! | TGGATTAGGTGGAAACTTAA+GGG | + | chr2.2:25376485-25376504 | MS.gene066192:CDS | 35.0% |
| !! | AGAATGTGATATGGATTAGG+TGG | + | chr2.2:25376474-25376493 | MS.gene066192:CDS | 35.0% |
| !! | ATGGATTAGGTGGAAACTTA+AGG | + | chr2.2:25376484-25376503 | MS.gene066192:CDS | 35.0% |
| !! | TTTGATTGAGTTGGGAGATA+AGG | - | chr2.2:25375512-25375531 | None:intergenic | 35.0% |
| !!! | GTTTTGGTGATGAAAGAGTT+TGG | - | chr2.2:25375556-25375575 | None:intergenic | 35.0% |
| !!! | TGTTTTGAAAACTCGATGTC+CGG | - | chr2.2:25375971-25375990 | None:intergenic | 35.0% |
| CTTGTGAAGTTGGAGTTTGA+AGG | - | chr2.2:25375637-25375656 | None:intergenic | 40.0% | |
| GACCCTTTGAACACATTTAC+TGG | + | chr2.2:25376350-25376369 | MS.gene066192:CDS | 40.0% | |
| TGGATGTCTACTCTTCTTCA+TGG | + | chr2.2:25376708-25376727 | MS.gene066192:CDS | 40.0% | |
| TTGGTGAAGAGGTTTGTCTT+TGG | - | chr2.2:25375537-25375556 | None:intergenic | 40.0% | |
| ! | AATTCTCCTTTAGCTTCCCA+AGG | - | chr2.2:25376524-25376543 | None:intergenic | 40.0% |
| ! | AATTGATCTTCTGGGCATTG+AGG | + | chr2.2:25376387-25376406 | MS.gene066192:CDS | 40.0% |
| ! | ATTCTCCTTTAGCTTCCCAA+GGG | - | chr2.2:25376523-25376542 | None:intergenic | 40.0% |
| ! | CCAAACCCTACATTTTTGTG+GGG | + | chr2.2:25376680-25376699 | MS.gene066192:CDS | 40.0% |
| ! | GATGAAAGAGTTTGGTGAAG+AGG | - | chr2.2:25375548-25375567 | None:intergenic | 40.0% |
| ! | GTCCAAACCCTACATTTTTG+TGG | + | chr2.2:25376678-25376697 | MS.gene066192:CDS | 40.0% |
| !! | AGGGAGACTTTGAAACAAGA+AGG | + | chr2.2:25376752-25376771 | MS.gene066192:CDS | 40.0% |
| !! | GGGAGACTTTGAAACAAGAA+GGG | + | chr2.2:25376753-25376772 | MS.gene066192:CDS | 40.0% |
| !! | GGTGTGTTAACTTGTGAAGT+TGG | - | chr2.2:25375647-25375666 | None:intergenic | 40.0% |
| ACAGGACCCCACAAAAATGT+AGG | - | chr2.2:25376689-25376708 | None:intergenic | 45.0% | |
| CAGGACCCCACAAAAATGTA+GGG | - | chr2.2:25376688-25376707 | None:intergenic | 45.0% | |
| CCCCACAAAAATGTAGGGTT+TGG | - | chr2.2:25376683-25376702 | None:intergenic | 45.0% | |
| GAAGAAGAGTAGACATCCAC+AGG | - | chr2.2:25376707-25376726 | None:intergenic | 45.0% | |
| GAGTTGGGAGATAAGGTTGT+AGG | - | chr2.2:25375505-25375524 | None:intergenic | 45.0% | |
| GGGAGATAAGGTTGTAGGTT+TGG | - | chr2.2:25375500-25375519 | None:intergenic | 45.0% | |
| TGAAGTTGGAGTTTGAAGGG+TGG | - | chr2.2:25375633-25375652 | None:intergenic | 45.0% | |
| ! | GAGTTCTAACAGCAAGTCCA+AGG | - | chr2.2:25375718-25375737 | None:intergenic | 45.0% |
| ! | TACATTTTTGTGGGGTCCTG+TGG | + | chr2.2:25376688-25376707 | MS.gene066192:CDS | 45.0% |
| !! | AATGTAGGGTTTGGACTAGC+AGG | - | chr2.2:25376674-25376693 | None:intergenic | 45.0% |
| !! | ATGTAGGGTTTGGACTAGCA+GGG | - | chr2.2:25376673-25376692 | None:intergenic | 45.0% |
| !! | TTCTGGGCATTGAGGTTTCA+TGG | + | chr2.2:25376395-25376414 | MS.gene066192:CDS | 45.0% |
| CATGGAGCTAGACCATCTTG+TGG | - | chr2.2:25376788-25376807 | None:intergenic | 50.0% | |
| CTATTGGAGTCTAGCGCAAG+TGG | - | chr2.2:25376151-25376170 | None:intergenic | 50.0% | |
| GGAGTTTGAAGGGTGGCTAA+GGG | - | chr2.2:25375626-25375645 | None:intergenic | 50.0% | |
| TGGAGTTTGAAGGGTGGCTA+AGG | - | chr2.2:25375627-25375646 | None:intergenic | 50.0% | |
| !! | GGGAGTTTGCTACCACAAGA+TGG | + | chr2.2:25376773-25376792 | MS.gene066192:CDS | 50.0% |
| CGTGTCCCTTGGGAAGCTAA+AGG | + | chr2.2:25376515-25376534 | MS.gene066192:CDS | 55.0% | |
| TGGAGTCTAGCGCAAGTGGT+TGG | - | chr2.2:25376147-25376166 | None:intergenic | 55.0% | |
| TTAGCTTCCCAAGGGACACG+CGG | - | chr2.2:25376515-25376534 | None:intergenic | 55.0% | |
| ! | GGTTGGTGCATGTGGTGTGT+CGG | - | chr2.2:25376130-25376149 | None:intergenic | 55.0% |
| ! | GCGCAAGTGGTTGGTGCATG+TGG | - | chr2.2:25376138-25376157 | None:intergenic | 60.0% |
| AGGGCGTGCCGCGTGTCCCT+TGG | + | chr2.2:25376504-25376523 | MS.gene066192:CDS | 75.0% | |
| GGGCGTGCCGCGTGTCCCTT+GGG | + | chr2.2:25376505-25376524 | MS.gene066192:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.2 | gene | 25375482 | 25376814 | 25375482 | ID=MS.gene066192 |
| chr2.2 | mRNA | 25375482 | 25376814 | 25375482 | ID=MS.gene066192.t1;Parent=MS.gene066192 |
| chr2.2 | exon | 25375482 | 25375792 | 25375482 | ID=MS.gene066192.t1.exon1;Parent=MS.gene066192.t1 |
| chr2.2 | CDS | 25375482 | 25375792 | 25375482 | ID=cds.MS.gene066192.t1;Parent=MS.gene066192.t1 |
| chr2.2 | exon | 25376331 | 25376814 | 25376331 | ID=MS.gene066192.t1.exon2;Parent=MS.gene066192.t1 |
| chr2.2 | CDS | 25376331 | 25376814 | 25376331 | ID=cds.MS.gene066192.t1;Parent=MS.gene066192.t1 |
| Gene Sequence |
| Protein sequence |
