Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068946.t1 | XP_013445321.1 | 94 | 268 | 10 | 2 | 1 | 262 | 1 | 268 | 1.20E-139 | 505.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068946.t1 | Q32KT5 | 28.0 | 161 | 102 | 5 | 75 | 221 | 147 | 307 | 3.1e-06 | 53.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068946.t1 | A0A072TPP7 | 94.0 | 268 | 10 | 2 | 1 | 262 | 1 | 268 | 9.0e-140 | 505.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049170 | MS.gene068946 | 0.831705 | 1.43E-55 | -1.69E-46 |
| MS.gene049356 | MS.gene068946 | 0.864225 | 1.42E-64 | -1.69E-46 |
| MS.gene049369 | MS.gene068946 | 0.818739 | 1.68E-52 | -1.69E-46 |
| MS.gene049488 | MS.gene068946 | 0.841406 | 4.84E-58 | -1.69E-46 |
| MS.gene050060 | MS.gene068946 | 0.854964 | 8.67E-62 | -1.69E-46 |
| MS.gene050426 | MS.gene068946 | -0.857123 | 2.02E-62 | -1.69E-46 |
| MS.gene050670 | MS.gene068946 | 0.864174 | 1.47E-64 | -1.69E-46 |
| MS.gene050971 | MS.gene068946 | 0.873862 | 1.06E-67 | -1.69E-46 |
| MS.gene05105 | MS.gene068946 | 0.827636 | 1.40E-54 | -1.69E-46 |
| MS.gene051525 | MS.gene068946 | 0.821918 | 3.13E-53 | -1.69E-46 |
| MS.gene051838 | MS.gene068946 | 0.818366 | 2.04E-52 | -1.69E-46 |
| MS.gene052011 | MS.gene068946 | -0.820411 | 6.96E-53 | -1.69E-46 |
| MS.gene052077 | MS.gene068946 | 0.867672 | 1.15E-65 | -1.69E-46 |
| MS.gene052128 | MS.gene068946 | -0.813065 | 3.09E-51 | -1.69E-46 |
| MS.gene052134 | MS.gene068946 | 0.814614 | 1.41E-51 | -1.69E-46 |
| MS.gene052135 | MS.gene068946 | 0.821622 | 3.66E-53 | -1.69E-46 |
| MS.gene052136 | MS.gene068946 | 0.815815 | 7.62E-52 | -1.69E-46 |
| MS.gene052188 | MS.gene068946 | 0.877898 | 4.34E-69 | -1.69E-46 |
| MS.gene052253 | MS.gene068946 | 0.842302 | 2.81E-58 | -1.69E-46 |
| MS.gene052310 | MS.gene068946 | 0.801938 | 7.11E-49 | -1.69E-46 |
| MS.gene052340 | MS.gene068946 | 0.845675 | 3.50E-59 | -1.69E-46 |
| MS.gene052414 | MS.gene068946 | 0.879944 | 8.23E-70 | -1.69E-46 |
| MS.gene052421 | MS.gene068946 | 0.811917 | 5.51E-51 | -1.69E-46 |
| MS.gene052469 | MS.gene068946 | 0.817103 | 3.92E-52 | -1.69E-46 |
| MS.gene05316 | MS.gene068946 | 0.809911 | 1.50E-50 | -1.69E-46 |
| MS.gene053449 | MS.gene068946 | 0.820955 | 5.22E-53 | -1.69E-46 |
| MS.gene053758 | MS.gene068946 | 0.850545 | 1.58E-60 | -1.69E-46 |
| MS.gene053873 | MS.gene068946 | 0.800982 | 1.12E-48 | -1.69E-46 |
| MS.gene053912 | MS.gene068946 | 0.86001 | 2.78E-63 | -1.69E-46 |
| MS.gene054183 | MS.gene068946 | 0.817309 | 3.53E-52 | -1.69E-46 |
| MS.gene054349 | MS.gene068946 | 0.875072 | 4.11E-68 | -1.69E-46 |
| MS.gene054556 | MS.gene068946 | 0.818899 | 1.54E-52 | -1.69E-46 |
| MS.gene05494 | MS.gene068946 | 0.814474 | 1.51E-51 | -1.69E-46 |
| MS.gene055116 | MS.gene068946 | 0.827234 | 1.75E-54 | -1.69E-46 |
| MS.gene055539 | MS.gene068946 | 0.855158 | 7.61E-62 | -1.69E-46 |
| MS.gene05553 | MS.gene068946 | 0.832918 | 7.18E-56 | -1.69E-46 |
| MS.gene055741 | MS.gene068946 | 0.856288 | 3.56E-62 | -1.69E-46 |
| MS.gene055744 | MS.gene068946 | 0.865228 | 6.88E-65 | -1.69E-46 |
| MS.gene055909 | MS.gene068946 | 0.817812 | 2.72E-52 | -1.69E-46 |
| MS.gene055911 | MS.gene068946 | 0.82135 | 4.23E-53 | -1.69E-46 |
| MS.gene056233 | MS.gene068946 | 0.837928 | 3.89E-57 | -1.69E-46 |
| MS.gene056511 | MS.gene068946 | 0.852881 | 3.45E-61 | -1.69E-46 |
| MS.gene056514 | MS.gene068946 | 0.810601 | 1.06E-50 | -1.69E-46 |
| MS.gene056659 | MS.gene068946 | 0.856539 | 3.01E-62 | -1.69E-46 |
| MS.gene056719 | MS.gene068946 | 0.808228 | 3.43E-50 | -1.69E-46 |
| MS.gene057124 | MS.gene068946 | 0.839289 | 1.73E-57 | -1.69E-46 |
| MS.gene057199 | MS.gene068946 | 0.836112 | 1.13E-56 | -1.69E-46 |
| MS.gene057356 | MS.gene068946 | -0.816518 | 5.31E-52 | -1.69E-46 |
| MS.gene057396 | MS.gene068946 | 0.855127 | 7.77E-62 | -1.69E-46 |
| MS.gene057609 | MS.gene068946 | 0.810716 | 1.00E-50 | -1.69E-46 |
| MS.gene057668 | MS.gene068946 | 0.804259 | 2.35E-49 | -1.69E-46 |
| MS.gene057734 | MS.gene068946 | 0.813587 | 2.37E-51 | -1.69E-46 |
| MS.gene057749 | MS.gene068946 | 0.845825 | 3.19E-59 | -1.69E-46 |
| MS.gene057823 | MS.gene068946 | 0.857204 | 1.91E-62 | -1.69E-46 |
| MS.gene057825 | MS.gene068946 | 0.809779 | 1.60E-50 | -1.69E-46 |
| MS.gene058007 | MS.gene068946 | 0.847994 | 8.13E-60 | -1.69E-46 |
| MS.gene058090 | MS.gene068946 | 0.821987 | 3.01E-53 | -1.69E-46 |
| MS.gene058120 | MS.gene068946 | 0.825032 | 5.85E-54 | -1.69E-46 |
| MS.gene058376 | MS.gene068946 | 0.841375 | 4.94E-58 | -1.69E-46 |
| MS.gene058444 | MS.gene068946 | 0.830988 | 2.15E-55 | -1.69E-46 |
| MS.gene058700 | MS.gene068946 | 0.815703 | 8.07E-52 | -1.69E-46 |
| MS.gene058710 | MS.gene068946 | 0.828424 | 9.06E-55 | -1.69E-46 |
| MS.gene058928 | MS.gene068946 | 0.866367 | 3.00E-65 | -1.69E-46 |
| MS.gene058948 | MS.gene068946 | 0.824297 | 8.71E-54 | -1.69E-46 |
| MS.gene058949 | MS.gene068946 | 0.803671 | 3.12E-49 | -1.69E-46 |
| MS.gene059011 | MS.gene068946 | 0.809797 | 1.58E-50 | -1.69E-46 |
| MS.gene059285 | MS.gene068946 | 0.85893 | 5.87E-63 | -1.69E-46 |
| MS.gene059366 | MS.gene068946 | 0.827521 | 1.49E-54 | -1.69E-46 |
| MS.gene059420 | MS.gene068946 | 0.85591 | 4.60E-62 | -1.69E-46 |
| MS.gene059455 | MS.gene068946 | 0.802585 | 5.23E-49 | -1.69E-46 |
| MS.gene059511 | MS.gene068946 | 0.801184 | 1.01E-48 | -1.69E-46 |
| MS.gene059674 | MS.gene068946 | 0.833968 | 3.93E-56 | -1.69E-46 |
| MS.gene059688 | MS.gene068946 | 0.819825 | 9.48E-53 | -1.69E-46 |
| MS.gene059692 | MS.gene068946 | 0.800657 | 1.30E-48 | -1.69E-46 |
| MS.gene059695 | MS.gene068946 | 0.806671 | 7.34E-50 | -1.69E-46 |
| MS.gene059717 | MS.gene068946 | 0.840575 | 8.01E-58 | -1.69E-46 |
| MS.gene059807 | MS.gene068946 | 0.867467 | 1.34E-65 | -1.69E-46 |
| MS.gene059876 | MS.gene068946 | 0.800226 | 1.59E-48 | -1.69E-46 |
| MS.gene060247 | MS.gene068946 | 0.828191 | 1.03E-54 | -1.69E-46 |
| MS.gene060372 | MS.gene068946 | 0.809292 | 2.03E-50 | -1.69E-46 |
| MS.gene060403 | MS.gene068946 | 0.812879 | 3.39E-51 | -1.69E-46 |
| MS.gene060837 | MS.gene068946 | 0.804092 | 2.55E-49 | -1.69E-46 |
| MS.gene061041 | MS.gene068946 | 0.800713 | 1.27E-48 | -1.69E-46 |
| MS.gene061049 | MS.gene068946 | 0.808353 | 3.23E-50 | -1.69E-46 |
| MS.gene061154 | MS.gene068946 | 0.840124 | 1.05E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene068946 | MS.gene42747 | PPI |
| MS.gene038976 | MS.gene068946 | PPI |
| MS.gene045724 | MS.gene068946 | PPI |
| MS.gene069717 | MS.gene068946 | PPI |
| MS.gene068946 | MS.gene62495 | PPI |
| MS.gene42746 | MS.gene068946 | PPI |
| MS.gene068946 | MS.gene066192 | PPI |
| MS.gene62495 | MS.gene068946 | PPI |
| MS.gene42747 | MS.gene068946 | PPI |
| MS.gene36105 | MS.gene068946 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068946.t1 | MTR_8g046460 | 93.284 | 268 | 12 | 2 | 1 | 262 | 1 | 268 | 2.55e-178 | 491 |
| MS.gene068946.t1 | MTR_2g064370 | 70.896 | 268 | 71 | 4 | 1 | 262 | 1 | 267 | 1.80e-131 | 373 |
| MS.gene068946.t1 | MTR_8g028425 | 57.143 | 154 | 63 | 2 | 72 | 223 | 92 | 244 | 5.94e-65 | 203 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068946.t1 | AT1G16320 | 69.231 | 221 | 67 | 1 | 43 | 262 | 53 | 273 | 2.78e-117 | 337 |
| MS.gene068946.t1 | AT1G79510 | 61.131 | 283 | 81 | 6 | 1 | 262 | 1 | 275 | 1.73e-116 | 335 |
| MS.gene068946.t1 | AT1G79510 | 61.131 | 283 | 81 | 6 | 1 | 262 | 1 | 275 | 1.73e-116 | 335 |
| MS.gene068946.t1 | AT2G46220 | 57.325 | 157 | 64 | 2 | 69 | 223 | 81 | 236 | 3.14e-66 | 206 |
Find 57 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGAAACCGGTTTCGGTTT+TGG | 0.220818 | 8.1:+58285238 | MS.gene068946:CDS |
| GACCCTTTGAACACATTTAC+TGG | 0.240823 | 8.1:+58284954 | MS.gene068946:CDS |
| AGGTACTTCTCGGTATAAAT+TGG | 0.261999 | 8.1:+58285151 | MS.gene068946:CDS |
| AGAAGTACAAGTTGATCTTT+TGG | 0.270946 | 8.1:+58284982 | MS.gene068946:CDS |
| ACCTTAATTATGATATTTAT+AGG | 0.278702 | 8.1:+58284504 | MS.gene068946:CDS |
| ACCTATAAATATCATAATTA+AGG | 0.297853 | 8.1:-58284505 | None:intergenic |
| CCCCATGAAAATGTTGGATT+TGG | 0.313331 | 8.1:-58285287 | None:intergenic |
| TGGATTCTAGTTCATGTTCA+TGG | 0.337564 | 8.1:+58285315 | MS.gene068946:CDS |
| GAATAAAGAGTATTGAGAAA+TGG | 0.346750 | 8.1:-58284312 | None:intergenic |
| AATAAAGAGTATTGAGAAAT+GGG | 0.349742 | 8.1:-58284311 | None:intergenic |
| GTTTGGATGTATACAGAATA+TGG | 0.351747 | 8.1:+58285045 | MS.gene068946:CDS |
| AATGTTGGATTTGGACTTGC+AGG | 0.366743 | 8.1:-58285278 | None:intergenic |
| CAACCTGTGCAGTGAAAGTT+TGG | 0.369856 | 8.1:-58284355 | None:intergenic |
| TTGGTGTTTGAATCTTGATT+TGG | 0.370847 | 8.1:-58284270 | None:intergenic |
| TGTTTATCTTGAGTAGCTAA+TGG | 0.394872 | 8.1:-58284392 | None:intergenic |
| GAAGATGATGAAACCGGTTT+CGG | 0.396965 | 8.1:+58285232 | MS.gene068946:CDS |
| GTTGTTACCACCAGATGGTT+TGG | 0.412534 | 8.1:+58285385 | MS.gene068946:CDS |
| GTGAATTTCAAGGTACTTCT+CGG | 0.412707 | 8.1:+58285141 | MS.gene068946:CDS |
| GGAACTTGAGGGGTGTGCCT+AGG | 0.417152 | 8.1:+58285099 | MS.gene068946:CDS |
| TTTGTTTCGTGAGATTGGTT+TGG | 0.421815 | 8.1:+58285028 | MS.gene068946:CDS |
| GAACTTGAGGGGTGTGCCTA+GGG | 0.426698 | 8.1:+58285100 | MS.gene068946:CDS |
| ACCAAATCCAAAACCGAAAC+CGG | 0.442141 | 8.1:-58285245 | None:intergenic |
| TTTCACTGCACAGGTTGCTC+AGG | 0.448262 | 8.1:+58284361 | MS.gene068946:CDS |
| GGGGTGTGCCTAGGGTTCCA+TGG | 0.454206 | 8.1:+58285108 | MS.gene068946:CDS |
| GGGTGTGCCTAGGGTTCCAT+GGG | 0.462556 | 8.1:+58285109 | MS.gene068946:CDS |
| TTGAATCTTGATTTGGATTG+AGG | 0.469278 | 8.1:-58284263 | None:intergenic |
| CAGAGAATGTGATATTGATC+AGG | 0.478427 | 8.1:+58285075 | MS.gene068946:CDS |
| TACCAGTAAATGTGTTCAAA+GGG | 0.481927 | 8.1:-58284956 | None:intergenic |
| TCCACAGAAGATGATGAAAC+CGG | 0.487224 | 8.1:+58285226 | MS.gene068946:CDS |
| GAACATGTAGCCAAACCATC+TGG | 0.493057 | 8.1:-58285395 | None:intergenic |
| AGTCCAAACTTTCACTGCAC+AGG | 0.494334 | 8.1:+58284352 | MS.gene068946:CDS |
| ATACCAGTAAATGTGTTCAA+AGG | 0.496720 | 8.1:-58284957 | None:intergenic |
| GAAGCTAAAGGTGAATTTCA+AGG | 0.517611 | 8.1:+58285131 | MS.gene068946:CDS |
| ATCAATATCACATTCTCTGA+AGG | 0.533171 | 8.1:-58285071 | None:intergenic |
| AATTCACCTTTAGCTTCCCA+TGG | 0.534577 | 8.1:-58285125 | None:intergenic |
| TTAGCTTCCCATGGAACCCT+AGG | 0.536034 | 8.1:-58285116 | None:intergenic |
| TATTGATCAGGTGGAACTTG+AGG | 0.540071 | 8.1:+58285087 | MS.gene068946:CDS |
| AAAGGACCCCATGAAAATGT+TGG | 0.541364 | 8.1:-58285293 | None:intergenic |
| ATTGATCAGGTGGAACTTGA+GGG | 0.551874 | 8.1:+58285088 | MS.gene068946:CDS |
| ACCGGTTTCATCATCTTCTG+TGG | 0.561359 | 8.1:-58285227 | None:intergenic |
| GAAAGATTGAGATTGCAAAG+AGG | 0.569214 | 8.1:-58284233 | None:intergenic |
| AGGGTTCCATGGGAAGCTAA+AGG | 0.578430 | 8.1:+58285119 | MS.gene068946:CDS |
| AGGTCTTTAACAAAGATCAA+AGG | 0.587544 | 8.1:-58284485 | None:intergenic |
| AGACAGTTGTTACCACCAGA+TGG | 0.589181 | 8.1:+58285380 | MS.gene068946:CDS |
| TAAACAGAATCAGCATCAGA+AGG | 0.609028 | 8.1:+58284409 | MS.gene068946:CDS |
| AGAATGTGATATTGATCAGG+TGG | 0.610163 | 8.1:+58285078 | MS.gene068946:CDS |
| CTTCTCGGTATAAATTGGAT+CGG | 0.610878 | 8.1:+58285156 | MS.gene068946:CDS |
| ATGTTGGATTTGGACTTGCA+GGG | 0.611890 | 8.1:-58285277 | None:intergenic |
| GCAGTGAAAGTTTGGACTGA+AGG | 0.616805 | 8.1:-58284347 | None:intergenic |
| TCAAGCAGTTAAGCACACAT+TGG | 0.624208 | 8.1:+58285349 | MS.gene068946:CDS |
| CGGTATAAATTGGATCGGAA+CGG | 0.634092 | 8.1:+58285161 | MS.gene068946:CDS |
| GAACATGAACTAGAATCCAA+AGG | 0.647700 | 8.1:-58285311 | None:intergenic |
| TGCTGTTAGAACCCTTCGTG+AGG | 0.651000 | 8.1:+58284457 | MS.gene068946:CDS |
| TTGATCAGGTGGAACTTGAG+GGG | 0.654298 | 8.1:+58285089 | MS.gene068946:CDS |
| CAAAGGCATATCCTCACGAA+GGG | 0.657035 | 8.1:-58284468 | None:intergenic |
| TCAAAGGCATATCCTCACGA+AGG | 0.664210 | 8.1:-58284469 | None:intergenic |
| CATGTAGCCAAACCATCTGG+TGG | 0.698747 | 8.1:-58285392 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACCTATAAATATCATAATTA+AGG | - | chr8.1:58284508-58284527 | None:intergenic | 15.0% |
| !! | ACCTTAATTATGATATTTAT+AGG | + | chr8.1:58284504-58284523 | MS.gene068946:CDS | 15.0% |
| !! | GATGATGTAATTAATATTTA+TGG | + | chr8.1:58284650-58284669 | MS.gene068946:intron | 15.0% |
| !! | TTAATTCTAAGTAATATGTA+AGG | + | chr8.1:58284714-58284733 | MS.gene068946:intron | 15.0% |
| !!! | AAAAATTGGATTTTTAATGT+TGG | + | chr8.1:58284611-58284630 | MS.gene068946:intron | 15.0% |
| !!! | AAAATTGGATTTTTAATGTT+GGG | + | chr8.1:58284612-58284631 | MS.gene068946:intron | 15.0% |
| !!! | TAATTTGAATTGTGTTATTT+AGG | + | chr8.1:58284584-58284603 | MS.gene068946:intron | 15.0% |
| !! | GTTATTTAGGTGAAAAAAAT+TGG | + | chr8.1:58284597-58284616 | MS.gene068946:intron | 20.0% |
| !!! | AATAAAGAGTATTGAGAAAT+GGG | - | chr8.1:58284314-58284333 | None:intergenic | 20.0% |
| !!! | TGAGTTTGATAATTTTTTCA+GGG | + | chr8.1:58284914-58284933 | MS.gene068946:intron | 20.0% |
| !!! | TTGAGTTTGATAATTTTTTC+AGG | + | chr8.1:58284913-58284932 | MS.gene068946:intron | 20.0% |
| !!! | TTGCTTTTGATGTAAATATA+TGG | + | chr8.1:58284557-58284576 | MS.gene068946:intron | 20.0% |
| ! | AACTTTGAGTGGAAAAAAAT+TGG | + | chr8.1:58284853-58284872 | MS.gene068946:intron | 25.0% |
| ! | ACTTTGAGTGGAAAAAAATT+GGG | + | chr8.1:58284854-58284873 | MS.gene068946:intron | 25.0% |
| ! | ATTAATATTTATGGACCCTT+TGG | + | chr8.1:58284659-58284678 | MS.gene068946:intron | 25.0% |
| ! | CAAAAATAGTTAACTTTGAG+TGG | + | chr8.1:58284842-58284861 | MS.gene068946:intron | 25.0% |
| !! | TATAGGTAATTTTCTCATCT+GGG | + | chr8.1:58284521-58284540 | MS.gene068946:intron | 25.0% |
| !! | TGTTGGGTTTAGTAATTTTA+AGG | + | chr8.1:58284628-58284647 | MS.gene068946:intron | 25.0% |
| !! | TTATAGGTAATTTTCTCATC+TGG | + | chr8.1:58284520-58284539 | MS.gene068946:intron | 25.0% |
| !!! | GAATAAAGAGTATTGAGAAA+TGG | - | chr8.1:58284315-58284334 | None:intergenic | 25.0% |
| !!! | TTATTTTGTGCAATAAGAGT+TGG | + | chr8.1:58284880-58284899 | MS.gene068946:intron | 25.0% |
| AACCATATATTCACATCCAA+AGG | - | chr8.1:58284678-58284697 | None:intergenic | 30.0% | |
| ACCATATATTCACATCCAAA+GGG | - | chr8.1:58284677-58284696 | None:intergenic | 30.0% | |
| AGGTCTTTAACAAAGATCAA+AGG | - | chr8.1:58284488-58284507 | None:intergenic | 30.0% | |
| ATACCAGTAAATGTGTTCAA+AGG | - | chr8.1:58284960-58284979 | None:intergenic | 30.0% | |
| ATCAATATCACATTCTCTGA+AGG | - | chr8.1:58285074-58285093 | None:intergenic | 30.0% | |
| GTTTGGATGTATACAGAATA+TGG | + | chr8.1:58285045-58285064 | MS.gene068946:CDS | 30.0% | |
| TACCAGTAAATGTGTTCAAA+GGG | - | chr8.1:58284959-58284978 | None:intergenic | 30.0% | |
| TGTTTATCTTGAGTAGCTAA+TGG | - | chr8.1:58284395-58284414 | None:intergenic | 30.0% | |
| ! | TCCAAATCCAACATTTTCAT+GGG | + | chr8.1:58285286-58285305 | MS.gene068946:CDS | 30.0% |
| ! | TTGGTGTTTGAATCTTGATT+TGG | - | chr8.1:58284273-58284292 | None:intergenic | 30.0% |
| !! | AGAATTTTGTTTCGTGAGAT+TGG | + | chr8.1:58285023-58285042 | MS.gene068946:CDS | 30.0% |
| !! | GATGAGTTTTATCTCAATCT+TGG | + | chr8.1:58284431-58284450 | MS.gene068946:CDS | 30.0% |
| !! | TTGAATCTTGATTTGGATTG+AGG | - | chr8.1:58284266-58284285 | None:intergenic | 30.0% |
| !!! | AGAAGTACAAGTTGATCTTT+TGG | + | chr8.1:58284982-58285001 | MS.gene068946:CDS | 30.0% |
| !!! | CTATTTTTGTCCATACAAAG+TGG | - | chr8.1:58284831-58284850 | None:intergenic | 30.0% |
| !!! | GAAGTACAAGTTGATCTTTT+GGG | + | chr8.1:58284983-58285002 | MS.gene068946:CDS | 30.0% |
| !!! | GTTTTGAAGAAGAAAGTGTT+TGG | - | chr8.1:58284292-58284311 | None:intergenic | 30.0% |
| ACCCTTTGGATGTGAATATA+TGG | + | chr8.1:58284673-58284692 | MS.gene068946:intron | 35.0% | |
| AGAATGTGATATTGATCAGG+TGG | + | chr8.1:58285078-58285097 | MS.gene068946:CDS | 35.0% | |
| AGGTACTTCTCGGTATAAAT+TGG | + | chr8.1:58285151-58285170 | MS.gene068946:CDS | 35.0% | |
| CAGAGAATGTGATATTGATC+AGG | + | chr8.1:58285075-58285094 | MS.gene068946:CDS | 35.0% | |
| CTTCTCGGTATAAATTGGAT+CGG | + | chr8.1:58285156-58285175 | MS.gene068946:CDS | 35.0% | |
| GAAAGATTGAGATTGCAAAG+AGG | - | chr8.1:58284236-58284255 | None:intergenic | 35.0% | |
| GAACATGAACTAGAATCCAA+AGG | - | chr8.1:58285314-58285333 | None:intergenic | 35.0% | |
| GAAGCTAAAGGTGAATTTCA+AGG | + | chr8.1:58285131-58285150 | MS.gene068946:CDS | 35.0% | |
| TAAACAGAATCAGCATCAGA+AGG | + | chr8.1:58284409-58284428 | MS.gene068946:CDS | 35.0% | |
| ! | CAGGGATGATGTAACATTTT+TGG | + | chr8.1:58284932-58284951 | MS.gene068946:intron | 35.0% |
| ! | CCAAATCCAACATTTTCATG+GGG | + | chr8.1:58285287-58285306 | MS.gene068946:CDS | 35.0% |
| ! | GTCCAAATCCAACATTTTCA+TGG | + | chr8.1:58285285-58285304 | MS.gene068946:CDS | 35.0% |
| ! | GTGAATTTCAAGGTACTTCT+CGG | + | chr8.1:58285141-58285160 | MS.gene068946:CDS | 35.0% |
| ! | TTTGTTTCGTGAGATTGGTT+TGG | + | chr8.1:58285028-58285047 | MS.gene068946:CDS | 35.0% |
| !! | AAACTCATTGCCACTTTGTA+TGG | + | chr8.1:58284818-58284837 | MS.gene068946:intron | 35.0% |
| !! | TGGATTCTAGTTCATGTTCA+TGG | + | chr8.1:58285315-58285334 | MS.gene068946:CDS | 35.0% |
| AAAGGACCCCATGAAAATGT+TGG | - | chr8.1:58285296-58285315 | None:intergenic | 40.0% | |
| AATGTTGGATTTGGACTTGC+AGG | - | chr8.1:58285281-58285300 | None:intergenic | 40.0% | |
| ACCAAATCCAAAACCGAAAC+CGG | - | chr8.1:58285248-58285267 | None:intergenic | 40.0% | |
| AGTCGTTCGAACCTAAGTTA+AGG | - | chr8.1:58284771-58284790 | None:intergenic | 40.0% | |
| ATGTTGGATTTGGACTTGCA+GGG | - | chr8.1:58285280-58285299 | None:intergenic | 40.0% | |
| ATTGATCAGGTGGAACTTGA+GGG | + | chr8.1:58285088-58285107 | MS.gene068946:CDS | 40.0% | |
| CCCCATGAAAATGTTGGATT+TGG | - | chr8.1:58285290-58285309 | None:intergenic | 40.0% | |
| CGGTATAAATTGGATCGGAA+CGG | + | chr8.1:58285161-58285180 | MS.gene068946:CDS | 40.0% | |
| GACCCTTTGAACACATTTAC+TGG | + | chr8.1:58284954-58284973 | MS.gene068946:CDS | 40.0% | |
| TATTGATCAGGTGGAACTTG+AGG | + | chr8.1:58285087-58285106 | MS.gene068946:CDS | 40.0% | |
| TCAAGCAGTTAAGCACACAT+TGG | + | chr8.1:58285349-58285368 | MS.gene068946:CDS | 40.0% | |
| TCCACAGAAGATGATGAAAC+CGG | + | chr8.1:58285226-58285245 | MS.gene068946:CDS | 40.0% | |
| ! | AACATTTTCATGGGGTCCTT+TGG | + | chr8.1:58285295-58285314 | MS.gene068946:CDS | 40.0% |
| ! | AATTCACCTTTAGCTTCCCA+TGG | - | chr8.1:58285128-58285147 | None:intergenic | 40.0% |
| ! | GAAGATGATGAAACCGGTTT+CGG | + | chr8.1:58285232-58285251 | MS.gene068946:CDS | 40.0% |
| !! | AGTTGATCTTTTGGGCATTG+AGG | + | chr8.1:58284991-58285010 | MS.gene068946:CDS | 40.0% |
| !!! | TTTTGGGCATTGAGGTTTCA+TGG | + | chr8.1:58284999-58285018 | MS.gene068946:CDS | 40.0% |
| AGACAGTTGTTACCACCAGA+TGG | + | chr8.1:58285380-58285399 | MS.gene068946:CDS | 45.0% | |
| AGTCCAAACTTTCACTGCAC+AGG | + | chr8.1:58284352-58284371 | MS.gene068946:CDS | 45.0% | |
| CAACCTGTGCAGTGAAAGTT+TGG | - | chr8.1:58284358-58284377 | None:intergenic | 45.0% | |
| CTCAACTGGCAAATGTCGAT+CGG | + | chr8.1:58284742-58284761 | MS.gene068946:intron | 45.0% | |
| GAACATGTAGCCAAACCATC+TGG | - | chr8.1:58285398-58285417 | None:intergenic | 45.0% | |
| GCAGTGAAAGTTTGGACTGA+AGG | - | chr8.1:58284350-58284369 | None:intergenic | 45.0% | |
| GTTGTTACCACCAGATGGTT+TGG | + | chr8.1:58285385-58285404 | MS.gene068946:CDS | 45.0% | |
| TATGTAAGGCCTAGCTCAAC+TGG | + | chr8.1:58284728-58284747 | MS.gene068946:intron | 45.0% | |
| TCGATCGGACACCTTAACTT+AGG | + | chr8.1:58284757-58284776 | MS.gene068946:intron | 45.0% | |
| TTGATCAGGTGGAACTTGAG+GGG | + | chr8.1:58285089-58285108 | MS.gene068946:CDS | 45.0% | |
| ! | ACCGGTTTCATCATCTTCTG+TGG | - | chr8.1:58285230-58285249 | None:intergenic | 45.0% |
| ! | CAAAGGCATATCCTCACGAA+GGG | - | chr8.1:58284471-58284490 | None:intergenic | 45.0% |
| ! | TCAAAGGCATATCCTCACGA+AGG | - | chr8.1:58284472-58284491 | None:intergenic | 45.0% |
| !! | GATGAAACCGGTTTCGGTTT+TGG | + | chr8.1:58285238-58285257 | MS.gene068946:CDS | 45.0% |
| !!! | ACCGGTTTCGGTTTTGGATT+TGG | + | chr8.1:58285244-58285263 | MS.gene068946:CDS | 45.0% |
| AGGGTTCCATGGGAAGCTAA+AGG | + | chr8.1:58285119-58285138 | MS.gene068946:CDS | 50.0% | |
| CATGTAGCCAAACCATCTGG+TGG | - | chr8.1:58285395-58285414 | None:intergenic | 50.0% | |
| CGACATTTGCCAGTTGAGCT+AGG | - | chr8.1:58284740-58284759 | None:intergenic | 50.0% | |
| TAGGTTCGAACGACTCGTAG+TGG | + | chr8.1:58284776-58284795 | MS.gene068946:intron | 50.0% | |
| TGCTGTTAGAACCCTTCGTG+AGG | + | chr8.1:58284457-58284476 | MS.gene068946:CDS | 50.0% | |
| TTAGCTTCCCATGGAACCCT+AGG | - | chr8.1:58285119-58285138 | None:intergenic | 50.0% | |
| TTTCACTGCACAGGTTGCTC+AGG | + | chr8.1:58284361-58284380 | MS.gene068946:CDS | 50.0% | |
| ! | GAACTTGAGGGGTGTGCCTA+GGG | + | chr8.1:58285100-58285119 | MS.gene068946:CDS | 55.0% |
| ! | TCGAACGACTCGTAGTGGAG+TGG | + | chr8.1:58284781-58284800 | MS.gene068946:intron | 55.0% |
| GGGTGTGCCTAGGGTTCCAT+GGG | + | chr8.1:58285109-58285128 | MS.gene068946:CDS | 60.0% | |
| ! | GGAACTTGAGGGGTGTGCCT+AGG | + | chr8.1:58285099-58285118 | MS.gene068946:CDS | 60.0% |
| GGGGTGTGCCTAGGGTTCCA+TGG | + | chr8.1:58285108-58285127 | MS.gene068946:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 58284224 | 58285421 | 58284224 | ID=MS.gene068946 |
| chr8.1 | mRNA | 58284224 | 58285421 | 58284224 | ID=MS.gene068946.t1;Parent=MS.gene068946 |
| chr8.1 | exon | 58284224 | 58284525 | 58284224 | ID=MS.gene068946.t1.exon1;Parent=MS.gene068946.t1 |
| chr8.1 | CDS | 58284224 | 58284525 | 58284224 | ID=cds.MS.gene068946.t1;Parent=MS.gene068946.t1 |
| chr8.1 | exon | 58284935 | 58285421 | 58284935 | ID=MS.gene068946.t1.exon2;Parent=MS.gene068946.t1 |
| chr8.1 | CDS | 58284935 | 58285421 | 58284935 | ID=cds.MS.gene068946.t1;Parent=MS.gene068946.t1 |
| Gene Sequence |
| Protein sequence |
