Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62495.t1 | KEH38231.1 | 95.9 | 267 | 8 | 1 | 1 | 264 | 1 | 267 | 1.20E-142 | 515.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62495.t1 | A0A072V9C5 | 95.9 | 267 | 8 | 1 | 1 | 264 | 1 | 267 | 8.7e-143 | 515.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene62495 | 0.818709 | 1.70E-52 | -1.69E-46 |
| MS.gene049217 | MS.gene62495 | 0.837171 | 6.08E-57 | -1.69E-46 |
| MS.gene049222 | MS.gene62495 | 0.851645 | 7.76E-61 | -1.69E-46 |
| MS.gene049232 | MS.gene62495 | 0.815619 | 8.42E-52 | -1.69E-46 |
| MS.gene049285 | MS.gene62495 | 0.842547 | 2.42E-58 | -1.69E-46 |
| MS.gene049320 | MS.gene62495 | 0.839196 | 1.83E-57 | -1.69E-46 |
| MS.gene049627 | MS.gene62495 | 0.804638 | 1.96E-49 | -1.69E-46 |
| MS.gene049633 | MS.gene62495 | 0.80448 | 2.12E-49 | -1.69E-46 |
| MS.gene05010 | MS.gene62495 | 0.839129 | 1.91E-57 | -1.69E-46 |
| MS.gene050163 | MS.gene62495 | 0.811187 | 7.94E-51 | -1.69E-46 |
| MS.gene050165 | MS.gene62495 | 0.802912 | 4.48E-49 | -1.69E-46 |
| MS.gene050170 | MS.gene62495 | 0.805172 | 1.52E-49 | -1.69E-46 |
| MS.gene050323 | MS.gene62495 | 0.813745 | 2.19E-51 | -1.69E-46 |
| MS.gene050333 | MS.gene62495 | 0.801392 | 9.20E-49 | -1.69E-46 |
| MS.gene050496 | MS.gene62495 | 0.807867 | 4.10E-50 | -1.69E-46 |
| MS.gene050504 | MS.gene62495 | 0.844405 | 7.72E-59 | -1.69E-46 |
| MS.gene050518 | MS.gene62495 | 0.822166 | 2.74E-53 | -1.69E-46 |
| MS.gene050577 | MS.gene62495 | 0.813558 | 2.41E-51 | -1.69E-46 |
| MS.gene050612 | MS.gene62495 | 0.833989 | 3.88E-56 | -1.69E-46 |
| MS.gene050675 | MS.gene62495 | 0.815039 | 1.13E-51 | -1.69E-46 |
| MS.gene050699 | MS.gene62495 | 0.829353 | 5.40E-55 | -1.69E-46 |
| MS.gene050747 | MS.gene62495 | 0.821382 | 4.16E-53 | -1.69E-46 |
| MS.gene050772 | MS.gene62495 | 0.82661 | 2.47E-54 | -1.69E-46 |
| MS.gene05080 | MS.gene62495 | 0.826283 | 2.95E-54 | -1.69E-46 |
| MS.gene050868 | MS.gene62495 | 0.859384 | 4.29E-63 | -1.69E-46 |
| MS.gene050871 | MS.gene62495 | 0.858733 | 6.73E-63 | -1.69E-46 |
| MS.gene050950 | MS.gene62495 | 0.812729 | 3.66E-51 | -1.69E-46 |
| MS.gene050986 | MS.gene62495 | 0.815685 | 8.15E-52 | -1.69E-46 |
| MS.gene051268 | MS.gene62495 | 0.806919 | 6.51E-50 | -1.69E-46 |
| MS.gene051551 | MS.gene62495 | 0.814597 | 1.42E-51 | -1.69E-46 |
| MS.gene052164 | MS.gene62495 | 0.829735 | 4.36E-55 | -1.69E-46 |
| MS.gene052482 | MS.gene62495 | 0.821968 | 3.04E-53 | -1.69E-46 |
| MS.gene052486 | MS.gene62495 | 0.833056 | 6.64E-56 | -1.69E-46 |
| MS.gene052503 | MS.gene62495 | 0.81508 | 1.11E-51 | -1.69E-46 |
| MS.gene052823 | MS.gene62495 | 0.809475 | 1.86E-50 | -1.69E-46 |
| MS.gene052825 | MS.gene62495 | 0.813908 | 2.02E-51 | -1.69E-46 |
| MS.gene052966 | MS.gene62495 | 0.816793 | 4.61E-52 | -1.69E-46 |
| MS.gene053203 | MS.gene62495 | 0.82101 | 5.07E-53 | -1.69E-46 |
| MS.gene053207 | MS.gene62495 | 0.805814 | 1.11E-49 | -1.69E-46 |
| MS.gene053213 | MS.gene62495 | 0.831653 | 1.48E-55 | -1.69E-46 |
| MS.gene053286 | MS.gene62495 | 0.831058 | 2.07E-55 | -1.69E-46 |
| MS.gene053436 | MS.gene62495 | 0.813322 | 2.71E-51 | -1.69E-46 |
| MS.gene053479 | MS.gene62495 | 0.80229 | 6.02E-49 | -1.69E-46 |
| MS.gene053480 | MS.gene62495 | 0.807352 | 5.27E-50 | -1.69E-46 |
| MS.gene053574 | MS.gene62495 | 0.81925 | 1.28E-52 | -1.69E-46 |
| MS.gene053626 | MS.gene62495 | 0.819447 | 1.16E-52 | -1.69E-46 |
| MS.gene053632 | MS.gene62495 | 0.817987 | 2.48E-52 | -1.69E-46 |
| MS.gene053633 | MS.gene62495 | 0.816574 | 5.16E-52 | -1.69E-46 |
| MS.gene053824 | MS.gene62495 | 0.837107 | 6.32E-57 | -1.69E-46 |
| MS.gene054003 | MS.gene62495 | 0.84008 | 1.08E-57 | -1.69E-46 |
| MS.gene054595 | MS.gene62495 | 0.836615 | 8.43E-57 | -1.69E-46 |
| MS.gene054600 | MS.gene62495 | 0.841521 | 4.52E-58 | -1.69E-46 |
| MS.gene054642 | MS.gene62495 | 0.834458 | 2.96E-56 | -1.69E-46 |
| MS.gene054954 | MS.gene62495 | 0.839169 | 1.86E-57 | -1.69E-46 |
| MS.gene055206 | MS.gene62495 | 0.804184 | 2.44E-49 | -1.69E-46 |
| MS.gene055362 | MS.gene62495 | 0.84846 | 6.04E-60 | -1.69E-46 |
| MS.gene055502 | MS.gene62495 | 0.840342 | 9.21E-58 | -1.69E-46 |
| MS.gene055577 | MS.gene62495 | 0.840544 | 8.16E-58 | -1.69E-46 |
| MS.gene055722 | MS.gene62495 | 0.812101 | 5.02E-51 | -1.69E-46 |
| MS.gene055750 | MS.gene62495 | 0.818308 | 2.10E-52 | -1.69E-46 |
| MS.gene055751 | MS.gene62495 | 0.8017 | 7.96E-49 | -1.69E-46 |
| MS.gene05589 | MS.gene62495 | 0.810982 | 8.79E-51 | -1.69E-46 |
| MS.gene055941 | MS.gene62495 | 0.810861 | 9.34E-51 | -1.69E-46 |
| MS.gene056374 | MS.gene62495 | 0.806975 | 6.33E-50 | -1.69E-46 |
| MS.gene056409 | MS.gene62495 | 0.811769 | 5.93E-51 | -1.69E-46 |
| MS.gene056446 | MS.gene62495 | 0.823997 | 1.02E-53 | -1.69E-46 |
| MS.gene056504 | MS.gene62495 | 0.841175 | 5.57E-58 | -1.69E-46 |
| MS.gene056510 | MS.gene62495 | 0.863023 | 3.35E-64 | -1.69E-46 |
| MS.gene056610 | MS.gene62495 | 0.815786 | 7.73E-52 | -1.69E-46 |
| MS.gene056657 | MS.gene62495 | 0.83953 | 1.50E-57 | -1.69E-46 |
| MS.gene056878 | MS.gene62495 | 0.804657 | 1.94E-49 | -1.69E-46 |
| MS.gene057014 | MS.gene62495 | -0.815361 | 9.62E-52 | -1.69E-46 |
| MS.gene057831 | MS.gene62495 | 0.831591 | 1.53E-55 | -1.69E-46 |
| MS.gene05787 | MS.gene62495 | 0.822708 | 2.05E-53 | -1.69E-46 |
| MS.gene058157 | MS.gene62495 | 0.819494 | 1.13E-52 | -1.69E-46 |
| MS.gene05837 | MS.gene62495 | 0.829179 | 5.95E-55 | -1.69E-46 |
| MS.gene058419 | MS.gene62495 | 0.82682 | 2.20E-54 | -1.69E-46 |
| MS.gene058544 | MS.gene62495 | 0.8137 | 2.24E-51 | -1.69E-46 |
| MS.gene058773 | MS.gene62495 | 0.85362 | 2.12E-61 | -1.69E-46 |
| MS.gene059022 | MS.gene62495 | 0.842593 | 2.35E-58 | -1.69E-46 |
| MS.gene059023 | MS.gene62495 | 0.838896 | 2.19E-57 | -1.69E-46 |
| MS.gene05913 | MS.gene62495 | 0.801485 | 8.81E-49 | -1.69E-46 |
| MS.gene059677 | MS.gene62495 | 0.827859 | 1.24E-54 | -1.69E-46 |
| MS.gene059718 | MS.gene62495 | 0.83171 | 1.43E-55 | -1.69E-46 |
| MS.gene059801 | MS.gene62495 | 0.821656 | 3.60E-53 | -1.69E-46 |
| MS.gene059865 | MS.gene62495 | 0.824205 | 9.16E-54 | -1.69E-46 |
| MS.gene060295 | MS.gene62495 | 0.824465 | 7.95E-54 | -1.69E-46 |
| MS.gene060482 | MS.gene62495 | 0.82373 | 1.18E-53 | -1.69E-46 |
| MS.gene060595 | MS.gene62495 | -0.804208 | 2.41E-49 | -1.69E-46 |
| MS.gene060703 | MS.gene62495 | 0.832207 | 1.08E-55 | -1.69E-46 |
| MS.gene060762 | MS.gene62495 | 0.825412 | 4.75E-54 | -1.69E-46 |
| MS.gene060778 | MS.gene62495 | 0.804791 | 1.82E-49 | -1.69E-46 |
| MS.gene06077 | MS.gene62495 | 0.836998 | 6.74E-57 | -1.69E-46 |
| MS.gene06092 | MS.gene62495 | 0.807523 | 4.85E-50 | -1.69E-46 |
| MS.gene060982 | MS.gene62495 | 0.831581 | 1.54E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene038976 | MS.gene62495 | PPI |
| MS.gene42746 | MS.gene62495 | PPI |
| MS.gene62495 | MS.gene42747 | PPI |
| MS.gene045724 | MS.gene62495 | PPI |
| MS.gene069717 | MS.gene62495 | PPI |
| MS.gene068946 | MS.gene62495 | PPI |
| MS.gene42747 | MS.gene62495 | PPI |
| MS.gene36105 | MS.gene62495 | PPI |
| MS.gene62495 | MS.gene068946 | PPI |
| MS.gene62495 | MS.gene066192 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62495.t1 | MTR_2g064370 | 95.880 | 267 | 8 | 1 | 1 | 264 | 1 | 267 | 0.0 | 517 |
| MS.gene62495.t1 | MTR_8g046460 | 71.654 | 254 | 66 | 3 | 14 | 264 | 18 | 268 | 1.18e-133 | 378 |
| MS.gene62495.t1 | MTR_8g028425 | 57.792 | 154 | 63 | 1 | 75 | 226 | 92 | 245 | 7.73e-65 | 203 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62495.t1 | AT1G79510 | 66.182 | 275 | 82 | 7 | 1 | 264 | 1 | 275 | 1.38e-121 | 348 |
| MS.gene62495.t1 | AT1G79510 | 66.182 | 275 | 82 | 7 | 1 | 264 | 1 | 275 | 1.38e-121 | 348 |
| MS.gene62495.t1 | AT1G16320 | 60.219 | 274 | 98 | 6 | 1 | 264 | 1 | 273 | 4.91e-112 | 323 |
| MS.gene62495.t1 | AT2G46220 | 55.414 | 157 | 68 | 1 | 72 | 226 | 81 | 237 | 4.41e-65 | 203 |
Find 64 sgRNAs with CRISPR-Local
Find 107 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGTACAAATTGATCTTC+TGG | 0.216595 | 2.1:+31325613 | MS.gene62495:CDS |
| GACCCTTTGAACACATTTAC+TGG | 0.221962 | 2.1:+31325585 | MS.gene62495:CDS |
| AGGCACTTCAAAGTATAAAT+TGG | 0.231544 | 2.1:+31325782 | MS.gene62495:CDS |
| TATTAAACCAGTTTCAGTTT+TGG | 0.296641 | 2.1:+31325866 | MS.gene62495:CDS |
| GAGTTAGGAGATAAGGTTGT+AGG | 0.322371 | 2.1:-31324563 | None:intergenic |
| TTCATGGATAACTTTATATA+AGG | 0.327641 | 2.1:+31325959 | MS.gene62495:CDS |
| TTCTGGGCATTGAGGTTTCA+TGG | 0.332313 | 2.1:+31325630 | MS.gene62495:CDS |
| TAACTTTATATAAGGCAGTT+AGG | 0.342291 | 2.1:+31325967 | MS.gene62495:CDS |
| AGGAGATAAGGTTGTAGGTT+TGG | 0.345030 | 2.1:-31324558 | None:intergenic |
| AGGGCGTGCCGCGTGTCCCT+TGG | 0.359335 | 2.1:+31325739 | MS.gene62495:CDS |
| TTGGTGAAGAGGTTTGTCTT+TGG | 0.362955 | 2.1:-31324595 | None:intergenic |
| AGAAAATGTGAAGTGGGTTT+TGG | 0.372710 | 2.1:-31324630 | None:intergenic |
| ACAAAATCCAAAACTGAAAC+TGG | 0.373146 | 2.1:-31325873 | None:intergenic |
| ATCCATATCACATTCTTTGA+AGG | 0.378380 | 2.1:-31325702 | None:intergenic |
| GCATGGAGCTAGACCATCTT+GGG | 0.390373 | 2.1:-31326021 | None:intergenic |
| GGGCGTGCCGCGTGTCCCTT+GGG | 0.391041 | 2.1:+31325740 | MS.gene62495:CDS |
| AACCTTCAAAGAATGTGATA+TGG | 0.392294 | 2.1:+31325700 | MS.gene62495:CDS |
| AGAAGAAGAATTTGAGGAAG+TGG | 0.395061 | 2.1:-31324661 | None:intergenic |
| CAAAGAATGTGATATGGATT+AGG | 0.401184 | 2.1:+31325706 | MS.gene62495:CDS |
| ATGGATTAGGTGGAACCTTA+AGG | 0.407766 | 2.1:+31325719 | MS.gene62495:CDS |
| AAAGTACAAATTGATCTTCT+GGG | 0.411012 | 2.1:+31325614 | MS.gene62495:CDS |
| TGGATGTCTACTCTTCTTCA+TGG | 0.415651 | 2.1:+31325943 | MS.gene62495:CDS |
| GGACACGCGGCACGCCCTTA+AGG | 0.419205 | 2.1:-31325734 | None:intergenic |
| TTTGATTGAGTTAGGAGATA+AGG | 0.419777 | 2.1:-31324570 | None:intergenic |
| TGTTTATCTTGAACACTTGA+TGG | 0.420634 | 2.1:-31324726 | None:intergenic |
| TTGACATAGAATTCATCCTT+TGG | 0.425313 | 2.1:-31324753 | None:intergenic |
| AATGTAGGGTTTGGACTAGC+AGG | 0.427331 | 2.1:-31325906 | None:intergenic |
| AACTTTATATAAGGCAGTTA+GGG | 0.433549 | 2.1:+31325968 | MS.gene62495:CDS |
| AGGTCTTTGATGAAGATCAT+AGG | 0.436047 | 2.1:-31324813 | None:intergenic |
| TGAACATAAAGTTGATAACT+TGG | 0.441163 | 2.1:+31325824 | MS.gene62495:CDS |
| AGCATGGAGCTAGACCATCT+TGG | 0.453020 | 2.1:-31326022 | None:intergenic |
| ATTCCAGTAAATGTGTTCAA+AGG | 0.467787 | 2.1:-31325588 | None:intergenic |
| TGGATTAGGTGGAACCTTAA+GGG | 0.470608 | 2.1:+31325720 | MS.gene62495:CDS |
| TGGAGTTTGAAGCGTGGCTA+AGG | 0.477330 | 2.1:-31324685 | None:intergenic |
| TTCCAGTAAATGTGTTCAAA+GGG | 0.481927 | 2.1:-31325587 | None:intergenic |
| ACCTCAATTATGATATCTAT+AGG | 0.485916 | 2.1:+31324832 | MS.gene62495:CDS |
| AGGGAGACTTTGAAACAAGA+AGG | 0.486403 | 2.1:+31325987 | MS.gene62495:CDS |
| CATAGAATTCATCCTTTGGA+AGG | 0.496182 | 2.1:-31324749 | None:intergenic |
| TAAGGGAGAAGAAGAATTTG+AGG | 0.497045 | 2.1:-31324667 | None:intergenic |
| GGTGTGTTAACTTGTGAAGT+TGG | 0.498670 | 2.1:-31324705 | None:intergenic |
| AATTGATCTTCTGGGCATTG+AGG | 0.508643 | 2.1:+31325622 | MS.gene62495:CDS |
| GAAGCTAAAGGAGAATTTCA+AGG | 0.512138 | 2.1:+31325762 | MS.gene62495:CDS |
| AAGTATAAATTGGACAAGAA+TGG | 0.514460 | 2.1:+31325792 | MS.gene62495:CDS |
| GATACAAGAAAATGTGAAGT+GGG | 0.517635 | 2.1:-31324636 | None:intergenic |
| ACCTATAGATATCATAATTG+AGG | 0.529058 | 2.1:-31324833 | None:intergenic |
| GATGAATTCTATGTCAACCT+TGG | 0.529105 | 2.1:+31324759 | MS.gene62495:CDS |
| CGTGTCCCTTGGGAAGCTAA+AGG | 0.549445 | 2.1:+31325750 | MS.gene62495:CDS |
| AATTCTCCTTTAGCTTCCCA+AGG | 0.554730 | 2.1:-31325756 | None:intergenic |
| ATAGATAATACTTACGAGCA+TGG | 0.565339 | 2.1:-31326038 | None:intergenic |
| AGAATGTGATATGGATTAGG+TGG | 0.569695 | 2.1:+31325709 | MS.gene62495:CDS |
| GGAGTTTGAAGCGTGGCTAA+GGG | 0.570409 | 2.1:-31324684 | None:intergenic |
| GAAGAAGAGTAGACATCCAC+AGG | 0.583593 | 2.1:-31325939 | None:intergenic |
| AGATACAAGAAAATGTGAAG+TGG | 0.591521 | 2.1:-31324637 | None:intergenic |
| GAGTTCTCACAGCAAGTCCA+AGG | 0.593055 | 2.1:-31324776 | None:intergenic |
| GGGAGACTTTGAAACAAGAA+GGG | 0.595464 | 2.1:+31325988 | MS.gene62495:CDS |
| GGGAGTTTGCTACCCCAAGA+TGG | 0.596108 | 2.1:+31326008 | MS.gene62495:CDS |
| GATGAAAGAGTTTGGTGAAG+AGG | 0.606204 | 2.1:-31324606 | None:intergenic |
| ATTCTCCTTTAGCTTCCCAA+GGG | 0.617667 | 2.1:-31325755 | None:intergenic |
| ATGTAGGGTTTGGACTAGCA+GGG | 0.639151 | 2.1:-31325905 | None:intergenic |
| TTAGCTTCCCAAGGGACACG+CGG | 0.642123 | 2.1:-31325747 | None:intergenic |
| CACTTGATGTATATAGAGTG+TGG | 0.642892 | 2.1:+31325676 | MS.gene62495:CDS |
| TCAAGATAAACACCTTCCAA+AGG | 0.652143 | 2.1:+31324737 | MS.gene62495:CDS |
| CATGGAGCTAGACCATCTTG+GGG | 0.703009 | 2.1:-31326020 | None:intergenic |
| TGAAGTTGGAGTTTGAAGCG+TGG | 0.736224 | 2.1:-31324691 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATGATGTTATAAGAAA+TGG | - | chr2.1:31324886-31324905 | None:intergenic | 15.0% |
| !! | TATTAAATTGTACTATATAC+AGG | + | chr2.1:31325001-31325020 | MS.gene62495:intron | 15.0% |
| !!! | TTGAAATGATGTTTATATTT+TGG | + | chr2.1:31325460-31325479 | MS.gene62495:intron | 15.0% |
| !! | TGTTAAATAGGCTTATAATA+GGG | - | chr2.1:31324952-31324971 | None:intergenic | 20.0% |
| !! | TTCATGGATAACTTTATATA+AGG | + | chr2.1:31325959-31325978 | MS.gene62495:CDS | 20.0% |
| !!! | GAAACTGGTTTAATATTTTT+GGG | - | chr2.1:31325861-31325880 | None:intergenic | 20.0% |
| !!! | TGAAACTGGTTTAATATTTT+TGG | - | chr2.1:31325862-31325881 | None:intergenic | 20.0% |
| !!! | TGAAATTTGATCAATTTTCA+GGG | + | chr2.1:31325545-31325564 | MS.gene62495:intron | 20.0% |
| !!! | TTATTAGGTTGTGAATTTTA+AGG | + | chr2.1:31325509-31325528 | MS.gene62495:intron | 20.0% |
| !!! | TTGAAATTTGATCAATTTTC+AGG | + | chr2.1:31325544-31325563 | MS.gene62495:intron | 20.0% |
| ! | AAAGTACAAATTGATCTTCT+GGG | + | chr2.1:31325614-31325633 | MS.gene62495:CDS | 25.0% |
| ! | AACTTTATATAAGGCAGTTA+GGG | + | chr2.1:31325968-31325987 | MS.gene62495:CDS | 25.0% |
| ! | AAGTATAAATTGGACAAGAA+TGG | + | chr2.1:31325792-31325811 | MS.gene62495:CDS | 25.0% |
| ! | ACCTATAGATATCATAATTG+AGG | - | chr2.1:31324836-31324855 | None:intergenic | 25.0% |
| ! | ACCTCAATTATGATATCTAT+AGG | + | chr2.1:31324832-31324851 | MS.gene62495:CDS | 25.0% |
| ! | GTACACATTAAGTGTTAAAT+AGG | - | chr2.1:31324964-31324983 | None:intergenic | 25.0% |
| ! | GTGTTAAATAGGCTTATAAT+AGG | - | chr2.1:31324953-31324972 | None:intergenic | 25.0% |
| ! | GTTTGTAAAATGAGCTTATT+AGG | + | chr2.1:31325494-31325513 | MS.gene62495:intron | 25.0% |
| ! | TAACTTTATATAAGGCAGTT+AGG | + | chr2.1:31325967-31325986 | MS.gene62495:CDS | 25.0% |
| !! | AAAAGTACAAATTGATCTTC+TGG | + | chr2.1:31325613-31325632 | MS.gene62495:CDS | 25.0% |
| !! | TATTAAACCAGTTTCAGTTT+TGG | + | chr2.1:31325866-31325885 | MS.gene62495:CDS | 25.0% |
| !!! | TGAACATAAAGTTGATAACT+TGG | + | chr2.1:31325824-31325843 | MS.gene62495:CDS | 25.0% |
| AACCTTCAAAGAATGTGATA+TGG | + | chr2.1:31325700-31325719 | MS.gene62495:CDS | 30.0% | |
| AATTGTACTATATACAGGAC+TGG | + | chr2.1:31325006-31325025 | MS.gene62495:intron | 30.0% | |
| ACAAAATCCAAAACTGAAAC+TGG | - | chr2.1:31325876-31325895 | None:intergenic | 30.0% | |
| AGATACAAGAAAATGTGAAG+TGG | - | chr2.1:31324640-31324659 | None:intergenic | 30.0% | |
| AGGCACTTCAAAGTATAAAT+TGG | + | chr2.1:31325782-31325801 | MS.gene62495:CDS | 30.0% | |
| ATCCATATCACATTCTTTGA+AGG | - | chr2.1:31325705-31325724 | None:intergenic | 30.0% | |
| ATTCCAGTAAATGTGTTCAA+AGG | - | chr2.1:31325591-31325610 | None:intergenic | 30.0% | |
| CAAAGAATGTGATATGGATT+AGG | + | chr2.1:31325706-31325725 | MS.gene62495:CDS | 30.0% | |
| GATACAAGAAAATGTGAAGT+GGG | - | chr2.1:31324639-31324658 | None:intergenic | 30.0% | |
| TGTTTATCTTGAACACTTGA+TGG | - | chr2.1:31324729-31324748 | None:intergenic | 30.0% | |
| TTCCAGTAAATGTGTTCAAA+GGG | - | chr2.1:31325590-31325609 | None:intergenic | 30.0% | |
| TTGACATAGAATTCATCCTT+TGG | - | chr2.1:31324756-31324775 | None:intergenic | 30.0% | |
| TTTGATTGAGTTAGGAGATA+AGG | - | chr2.1:31324573-31324592 | None:intergenic | 30.0% | |
| ! | AGACAAGTTTTCTTATGCTT+AGG | + | chr2.1:31325102-31325121 | MS.gene62495:intron | 30.0% |
| ! | CAGGGATGATATAACATTTT+TGG | + | chr2.1:31325563-31325582 | MS.gene62495:intron | 30.0% |
| !!! | CTTTGGATTTTGATTGAGTT+AGG | - | chr2.1:31324581-31324600 | None:intergenic | 30.0% |
| AGAAGAAGAATTTGAGGAAG+TGG | - | chr2.1:31324664-31324683 | None:intergenic | 35.0% | |
| AGGTCTTTGATGAAGATCAT+AGG | - | chr2.1:31324816-31324835 | None:intergenic | 35.0% | |
| CAAACCAAAATTCTTGGTCT+TGG | + | chr2.1:31325335-31325354 | MS.gene62495:intron | 35.0% | |
| CACTTGATGTATATAGAGTG+TGG | + | chr2.1:31325676-31325695 | MS.gene62495:CDS | 35.0% | |
| CATAGAATTCATCCTTTGGA+AGG | - | chr2.1:31324752-31324771 | None:intergenic | 35.0% | |
| GAAGCTAAAGGAGAATTTCA+AGG | + | chr2.1:31325762-31325781 | MS.gene62495:CDS | 35.0% | |
| GATGAATTCTATGTCAACCT+TGG | + | chr2.1:31324759-31324778 | MS.gene62495:CDS | 35.0% | |
| TAAGGGAGAAGAAGAATTTG+AGG | - | chr2.1:31324670-31324689 | None:intergenic | 35.0% | |
| TCAAGATAAACACCTTCCAA+AGG | + | chr2.1:31324737-31324756 | MS.gene62495:CDS | 35.0% | |
| TGTGACCAAACCAAAATTCT+TGG | + | chr2.1:31325329-31325348 | MS.gene62495:intron | 35.0% | |
| TGTGACCAAACCAAAATTCT+TGG | - | chr2.1:31325348-31325329 | None:intergenic | 35.0% | |
| TTATGCTTAGGAGTTGAACT+TGG | + | chr2.1:31325114-31325133 | MS.gene62495:intron | 35.0% | |
| ! | TCCAAACCCTACATTTTTGT+GGG | + | chr2.1:31325914-31325933 | MS.gene62495:CDS | 35.0% |
| !! | AGAAAATGTGAAGTGGGTTT+TGG | - | chr2.1:31324633-31324652 | None:intergenic | 35.0% |
| !! | AGAATGTGATATGGATTAGG+TGG | + | chr2.1:31325709-31325728 | MS.gene62495:CDS | 35.0% |
| !!! | CAAGACCAAGAATTTTGGTT+TGG | - | chr2.1:31325337-31325356 | None:intergenic | 35.0% |
| !!! | GTTTTGGTGATGAAAGAGTT+TGG | - | chr2.1:31324617-31324636 | None:intergenic | 35.0% |
| ACCACTGAGAAAATCTTGTG+TGG | + | chr2.1:31325191-31325210 | MS.gene62495:intron | 40.0% | |
| AGGAGATAAGGTTGTAGGTT+TGG | - | chr2.1:31324561-31324580 | None:intergenic | 40.0% | |
| CAAACCAAAATTCTTGGTCC+TGG | - | chr2.1:31325218-31325237 | None:intergenic | 40.0% | |
| GACCCTTTGAACACATTTAC+TGG | + | chr2.1:31325585-31325604 | MS.gene62495:CDS | 40.0% | |
| GAGTTAGGAGATAAGGTTGT+AGG | - | chr2.1:31324566-31324585 | None:intergenic | 40.0% | |
| TGGATGTCTACTCTTCTTCA+TGG | + | chr2.1:31325943-31325962 | MS.gene62495:CDS | 40.0% | |
| TTGGTGAAGAGGTTTGTCTT+TGG | - | chr2.1:31324598-31324617 | None:intergenic | 40.0% | |
| ! | AATTCTCCTTTAGCTTCCCA+AGG | - | chr2.1:31325759-31325778 | None:intergenic | 40.0% |
| ! | AATTGATCTTCTGGGCATTG+AGG | + | chr2.1:31325622-31325641 | MS.gene62495:CDS | 40.0% |
| ! | ATTCTCCTTTAGCTTCCCAA+GGG | - | chr2.1:31325758-31325777 | None:intergenic | 40.0% |
| ! | CACAAGATTTTCTCAGTGGT+TGG | - | chr2.1:31325191-31325210 | None:intergenic | 40.0% |
| ! | CCAAACCCTACATTTTTGTG+GGG | + | chr2.1:31325915-31325934 | MS.gene62495:CDS | 40.0% |
| ! | GATGAAAGAGTTTGGTGAAG+AGG | - | chr2.1:31324609-31324628 | None:intergenic | 40.0% |
| ! | GTCCAAACCCTACATTTTTG+TGG | + | chr2.1:31325913-31325932 | MS.gene62495:CDS | 40.0% |
| ! | TCCACACAAGATTTTCTCAG+TGG | - | chr2.1:31325195-31325214 | None:intergenic | 40.0% |
| ! | TGGACCAAGACCAAGAATTT+TGG | - | chr2.1:31325342-31325361 | None:intergenic | 40.0% |
| ! | TGGATTAGGTGGAACCTTAA+GGG | + | chr2.1:31325720-31325739 | MS.gene62495:CDS | 40.0% |
| ! | TTCTCAGTGGTTGGTACATA+TGG | - | chr2.1:31325182-31325201 | None:intergenic | 40.0% |
| !! | AGGGAGACTTTGAAACAAGA+AGG | + | chr2.1:31325987-31326006 | MS.gene62495:CDS | 40.0% |
| !! | ATGGATTAGGTGGAACCTTA+AGG | + | chr2.1:31325719-31325738 | MS.gene62495:CDS | 40.0% |
| !! | GGGAGACTTTGAAACAAGAA+GGG | + | chr2.1:31325988-31326007 | MS.gene62495:CDS | 40.0% |
| !! | GGTGTGTTAACTTGTGAAGT+TGG | - | chr2.1:31324708-31324727 | None:intergenic | 40.0% |
| !!! | CAGGACCAAGAATTTTGGTT+TGG | + | chr2.1:31325216-31325235 | MS.gene62495:intron | 40.0% |
| ACAGGACCCCACAAAAATGT+AGG | - | chr2.1:31325924-31325943 | None:intergenic | 45.0% | |
| CAGGACCCCACAAAAATGTA+GGG | - | chr2.1:31325923-31325942 | None:intergenic | 45.0% | |
| CCCCACAAAAATGTAGGGTT+TGG | - | chr2.1:31325918-31325937 | None:intergenic | 45.0% | |
| CTATTGAAGTCTAGCGCAAG+TGG | - | chr2.1:31325383-31325402 | None:intergenic | 45.0% | |
| GAAGAAGAGTAGACATCCAC+AGG | - | chr2.1:31325942-31325961 | None:intergenic | 45.0% | |
| GAGAAAATCTTGTGTGGACC+AGG | + | chr2.1:31325197-31325216 | MS.gene62495:intron | 45.0% | |
| GAGAGAAGAGAAGAGAGAGA+AGG | - | chr2.1:31325262-31325281 | None:intergenic | 45.0% | |
| ! | GGTTGGTACATATGGTGTGT+CGG | - | chr2.1:31325174-31325193 | None:intergenic | 45.0% |
| ! | TACATTTTTGTGGGGTCCTG+TGG | + | chr2.1:31325923-31325942 | MS.gene62495:CDS | 45.0% |
| ! | TGAAGTTGGAGTTTGAAGCG+TGG | - | chr2.1:31324694-31324713 | None:intergenic | 45.0% |
| ! | TGGACCAGGACCAAGAATTT+TGG | + | chr2.1:31325211-31325230 | MS.gene62495:intron | 45.0% |
| !! | AATGTAGGGTTTGGACTAGC+AGG | - | chr2.1:31325909-31325928 | None:intergenic | 45.0% |
| !! | ATGTAGGGTTTGGACTAGCA+GGG | - | chr2.1:31325908-31325927 | None:intergenic | 45.0% |
| !! | TTCTGGGCATTGAGGTTTCA+TGG | + | chr2.1:31325630-31325649 | MS.gene62495:CDS | 45.0% |
| AGCATGGAGCTAGACCATCT+TGG | - | chr2.1:31326025-31326044 | None:intergenic | 50.0% | |
| CATGGAGCTAGACCATCTTG+GGG | - | chr2.1:31326023-31326042 | None:intergenic | 50.0% | |
| GAAGTCTAGCGCAAGTGGTT+GGG | - | chr2.1:31325378-31325397 | None:intergenic | 50.0% | |
| GAGTTCTCACAGCAAGTCCA+AGG | - | chr2.1:31324779-31324798 | None:intergenic | 50.0% | |
| GCATGGAGCTAGACCATCTT+GGG | - | chr2.1:31326024-31326043 | None:intergenic | 50.0% | |
| GGTTGGGAGAAACACTTGTG+TGG | - | chr2.1:31325362-31325381 | None:intergenic | 50.0% | |
| TGAAGTCTAGCGCAAGTGGT+TGG | - | chr2.1:31325379-31325398 | None:intergenic | 50.0% | |
| ! | GGAGTTTGAAGCGTGGCTAA+GGG | - | chr2.1:31324687-31324706 | None:intergenic | 50.0% |
| ! | TGGAGTTTGAAGCGTGGCTA+AGG | - | chr2.1:31324688-31324707 | None:intergenic | 50.0% |
| CGTGTCCCTTGGGAAGCTAA+AGG | + | chr2.1:31325750-31325769 | MS.gene62495:CDS | 55.0% | |
| TTAGCTTCCCAAGGGACACG+CGG | - | chr2.1:31325750-31325769 | None:intergenic | 55.0% | |
| !! | GGGAGTTTGCTACCCCAAGA+TGG | + | chr2.1:31326008-31326027 | MS.gene62495:CDS | 55.0% |
| GGACACGCGGCACGCCCTTA+AGG | - | chr2.1:31325737-31325756 | None:intergenic | 70.0% | |
| AGGGCGTGCCGCGTGTCCCT+TGG | + | chr2.1:31325739-31325758 | MS.gene62495:CDS | 75.0% | |
| GGGCGTGCCGCGTGTCCCTT+GGG | + | chr2.1:31325740-31325759 | MS.gene62495:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 31324543 | 31326049 | 31324543 | ID=MS.gene62495 |
| chr2.1 | mRNA | 31324543 | 31326049 | 31324543 | ID=MS.gene62495.t1;Parent=MS.gene62495 |
| chr2.1 | exon | 31324543 | 31324853 | 31324543 | ID=MS.gene62495.t1.exon1;Parent=MS.gene62495.t1 |
| chr2.1 | CDS | 31324543 | 31324853 | 31324543 | ID=cds.MS.gene62495.t1;Parent=MS.gene62495.t1 |
| chr2.1 | exon | 31325566 | 31326049 | 31325566 | ID=MS.gene62495.t1.exon2;Parent=MS.gene62495.t1 |
| chr2.1 | CDS | 31325566 | 31326049 | 31325566 | ID=cds.MS.gene62495.t1;Parent=MS.gene62495.t1 |
| Gene Sequence |
| Protein sequence |
