AlfalfaGEDB | MS.gene072872

M. sativa cultivar XinJiangDaYe / MS.gene072872

KEGG: -
GO: -
PFAM: PF14547.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072872.t1	XP_003603363.1	96.2	131	2	2	1	130	1	129	2.70E-47	198

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072872.t1	Q39176	60.9	87	32	2	45	130	83	168	2.8e-24	112.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072872.t1	G7JAH5	96.2	131	2	2	1	130	1	129	2.0e-47	198.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049173	MS.gene072872	0.823755	1.17E-53	-1.69E-46
MS.gene049217	MS.gene072872	0.835517	1.60E-56	-1.69E-46
MS.gene049222	MS.gene072872	0.802671	5.02E-49	-1.69E-46
MS.gene049232	MS.gene072872	0.808903	2.46E-50	-1.69E-46
MS.gene049285	MS.gene072872	0.853558	2.21E-61	-1.69E-46
MS.gene049320	MS.gene072872	0.860054	2.70E-63	-1.69E-46
MS.gene049600	MS.gene072872	0.811084	8.36E-51	-1.69E-46
MS.gene049828	MS.gene072872	0.821695	3.52E-53	-1.69E-46
MS.gene05010	MS.gene072872	0.80315	4.00E-49	-1.69E-46
MS.gene050163	MS.gene072872	0.864961	8.34E-65	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072872.t1	MTR_3g106750	95.420	131	3	2	1	130	1	129	2.33e-63	189
MS.gene072872.t1	MTR_3g106740	74.615	130	31	2	1	129	1	129	2.05e-56	172
MS.gene072872.t1	MTR_1g012690	57.325	157	37	4	1	130	1	154	1.94e-50	157
MS.gene072872.t1	MTR_1g012700	56.627	166	34	4	1	130	1	164	2.16e-49	155
MS.gene072872.t1	MTR_1g012710	60.784	153	35	3	1	130	1	151	1.01e-44	143
MS.gene072872.t1	MTR_1g012630	79.762	84	16	1	47	130	128	210	1.74e-41	137
MS.gene072872.t1	MTR_4g108150	50.820	122	56	2	9	130	6	123	6.67e-33	112
MS.gene072872.t1	MTR_4g101260	63.095	84	30	1	47	130	50	132	4.88e-31	107
MS.gene072872.t1	MTR_4g101330	40.588	170	58	6	1	129	1	168	2.60e-29	104
MS.gene072872.t1	MTR_4g101280	56.818	88	36	2	44	130	57	143	9.70e-29	102

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072872.t1	AT2G45180	69.048	84	25	1	47	130	52	134	4.20e-34	115
MS.gene072872.t1	AT4G12490	60.000	95	36	2	37	130	89	182	5.62e-32	112
MS.gene072872.t1	AT4G12500	38.764	178	60	4	1	130	1	177	1.85e-31	110
MS.gene072872.t1	AT4G12480	60.920	87	32	2	45	130	83	168	5.27e-31	108
MS.gene072872.t1	AT4G12470	58.889	90	35	2	42	130	73	161	8.28e-31	108
MS.gene072872.t1	AT5G46900	63.736	91	29	2	40	130	41	127	3.19e-30	105
MS.gene072872.t1	AT1G62510	61.176	85	31	2	46	129	66	149	1.55e-29	104
MS.gene072872.t1	AT5G46890	61.053	95	33	3	36	130	37	127	1.19e-28	101
MS.gene072872.t1	AT1G12090	62.195	82	29	2	49	129	57	137	1.30e-28	102
MS.gene072872.t1	AT4G12520	52.893	121	53	3	11	130	12	129	4.78e-28	100

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Find 44 sgRNAs with CRISPR-Local

Find 47 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGCACCAAGGATCCAGGTG+AGG	0.645068	3.2:+87426737	None:intergenic
AAGCCAACACCTTCACCCCA+AGG	0.614009	3.2:-87426958	MS.gene072872:CDS
AAGGAGAGAGAGTACTAAAA+TGG	0.390388	3.2:+87427041	None:intergenic
AATCAAAGGTTTGGCTGATT+TGG	0.237754	3.2:-87426830	MS.gene072872:CDS
AATTGTTGTGCAATAATCAA+AGG	0.523157	3.2:-87426844	MS.gene072872:CDS
AGCACAAACCCCTAACTTTA+AGG	0.205248	3.2:+87426918	None:intergenic
AGCACCAAGGATCCAGGTGA+GGG	0.612333	3.2:+87426738	None:intergenic
AGGATCCAGGTGAGGGTGAT+AGG	0.388310	3.2:+87426745	None:intergenic
AGGCACATTGAAAACCAGGA+GGG	0.674973	3.2:+87426701	None:intergenic
ATCACCCTCACCTGGATCCT+TGG	0.406696	3.2:-87426742	MS.gene072872:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAAAGATACCTTAAAGTTAG+GGG	-	chr3.2:87426842-87426861	MS.gene072872:CDS	30.0%
CCAAAGATACCTTAAAGTTA+GGG	-	chr3.2:87426841-87426860	MS.gene072872:CDS	30.0%
TAAAATGGTGGCAAAGAATT+TGG	+	chr3.2:87426715-87426734	None:intergenic	30.0%
TTGTGCAATAATCAAAGGTT+TGG	-	chr3.2:87426929-87426948	MS.gene072872:CDS	30.0%
AATCAAAGGTTTGGCTGATT+TGG	-	chr3.2:87426938-87426957	MS.gene072872:CDS	35.0%
CAGTAAATGTTGAGTAAGCA+AGG	+	chr3.2:87426749-87426768	None:intergenic	35.0%
CCCAAAGATACCTTAAAGTT+AGG	-	chr3.2:87426840-87426859	MS.gene072872:CDS	35.0%
TCAACATTTACTGAGGCTAA+GGG	-	chr3.2:87426756-87426775	MS.gene072872:CDS	35.0%
TGCTTACTCAACATTTACTG+AGG	-	chr3.2:87426749-87426768	MS.gene072872:CDS	35.0%
TTGTCTTTGCACTGCAATTA+AGG	-	chr3.2:87426971-87426990	MS.gene072872:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	87426699	87427091	87426699	ID=MS.gene072872
chr3.2	mRNA	87426699	87427091	87426699	ID=MS.gene072872.t1;Parent=MS.gene072872
chr3.2	exon	87426699	87427091	87426699	ID=MS.gene072872.t1.exon1;Parent=MS.gene072872.t1
chr3.2	CDS	87426699	87427091	87426699	ID=cds.MS.gene072872.t1;Parent=MS.gene072872.t1

Gene Sequence

>MS.gene072872

ATGGCTTCCAACACCAAATTCTTTGCCACCATTTTAGTACTCTCTCTCCTTGCTTACTCAACATTTACTGAGGCTAAGGGTTCATGCTCACCATCACCAAAGCCAAAGCCAAAGCCAACACCTTCACCCCAAGGTCACTGCCCCAAAGATACCTTAAAGTTAGGGGTTTGTGCTGATGTTTTAGGACTGGTTAATGTTGTTGTTGGGAATCCTGCTTCAGGTAGTAATTGTTGTGCAATAATCAAAGGTTTGGCTGATTTGGATGCTGCACTTTGTCTTTGCACTGCAATTAAGGCCAATGTGCTCGGAATAAACTTGAATGTACCTATCACCCTCACCTGGATCCTTGGTGCTTGTCAAAAAACAATCCCTCCTGGTTTTCAATGTGCCTAA

Protein sequence

>MS.gene072872.t1

MASNTKFFATILVLSLLAYSTFTEAKGSCSPSPKPKPKPTPSPQGHCPKDTLKLGVCADVLGLVNVVVGNPASGSNCCAIIKGLADLDAALCLCTAIKANVLGINLNVPITLTWILGACQKTIPPGFQCA