AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene060341


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060341.t1 MTR_4g115075 93.204 206 13 1 1 206 1 205 5.87e-120 338
MS.gene060341.t1 MTR_3g106850 32.110 218 124 8 1 206 1 206 7.94e-29 107
MS.gene060341.t1 MTR_1g069495 31.138 167 62 5 93 206 83 249 7.92e-19 82.4
MS.gene060341.t1 MTR_1g040675 30.137 146 74 4 69 206 50 175 9.06e-18 77.8
MS.gene060341.t1 MTR_1g070520 29.208 202 104 7 34 206 35 226 1.27e-17 78.6
MS.gene060341.t1 MTR_1g080860 31.847 157 75 6 78 206 82 234 1.33e-16 75.9
MS.gene060341.t1 MTR_1g076270 26.667 165 87 5 62 206 21 171 1.45e-16 74.3
MS.gene060341.t1 MTR_1g093350 26.667 165 87 5 62 206 21 171 1.45e-16 74.3
MS.gene060341.t1 MTR_1g080860 31.847 157 75 6 78 206 82 234 1.76e-16 75.9
MS.gene060341.t1 MTR_5g030710 27.848 158 81 3 76 206 165 316 2.17e-16 76.6
MS.gene060341.t1 MTR_1g093240 26.543 162 95 3 67 206 58 217 3.57e-16 74.7
MS.gene060341.t1 MTR_1g093240 26.543 162 95 3 67 206 58 217 4.10e-16 74.3
MS.gene060341.t1 MTR_8g067530 28.125 160 88 3 71 206 181 337 8.04e-16 75.1
MS.gene060341.t1 MTR_1g070830 26.708 161 92 3 60 206 46 194 9.47e-16 72.8
MS.gene060341.t1 MTR_6g488150 31.081 148 70 4 85 206 94 235 1.83e-15 72.8
MS.gene060341.t1 MTR_2g100780 28.205 156 69 4 93 206 97 251 1.89e-15 73.2
MS.gene060341.t1 MTR_4g011880 33.884 121 57 3 93 206 55 159 2.31e-15 71.2
MS.gene060341.t1 MTR_2g100780 28.205 156 69 3 93 206 97 251 2.63e-15 72.8
MS.gene060341.t1 MTR_7g096090 30.370 135 70 3 93 206 100 231 5.09e-15 71.6
MS.gene060341.t1 MTR_4g124300 32.258 124 63 4 91 206 70 180 1.32e-14 69.3
MS.gene060341.t1 MTR_5g067350 30.147 136 69 6 93 206 197 328 1.40e-14 71.6
MS.gene060341.t1 MTR_8g103030 30.435 138 68 2 93 206 141 274 1.66e-14 70.9
MS.gene060341.t1 MTR_7g110790 38.043 92 48 2 124 206 64 155 2.12e-13 65.5
MS.gene060341.t1 MTR_1g109510 34.737 95 54 2 120 206 74 168 3.70e-13 65.5
MS.gene060341.t1 MTR_1g085750 32.500 120 59 4 96 206 64 170 4.21e-13 65.1
MS.gene060341.t1 MTR_1g093240 26.351 148 85 3 67 192 58 203 2.59e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060341.t1 AT4G32280 28.571 245 131 8 1 206 1 240 1.09e-25 100
MS.gene060341.t1 AT1G04550 35.616 146 61 4 93 205 70 215 1.13e-21 89.4
MS.gene060341.t1 AT4G32280 43.750 80 42 1 130 206 119 198 4.62e-20 84.3
MS.gene060341.t1 AT2G33310 29.651 172 72 5 74 206 63 224 7.60e-20 84.7
MS.gene060341.t1 AT2G33310 31.373 153 61 4 93 206 76 223 8.82e-20 84.3
MS.gene060341.t1 AT2G33310 31.373 153 61 4 93 206 76 223 8.82e-20 84.3
MS.gene060341.t1 AT5G25890 32.414 145 92 2 64 206 20 160 1.05e-19 82.8
MS.gene060341.t1 AT5G43700 30.147 136 77 3 79 206 49 174 2.48e-18 79.3
MS.gene060341.t1 AT1G04240 31.884 138 76 3 78 206 50 178 2.10e-17 77.0
MS.gene060341.t1 AT1G04240 31.884 138 76 3 78 206 150 278 2.43e-17 78.6
MS.gene060341.t1 AT4G28640 30.137 146 70 3 93 206 89 234 2.97e-17 77.8
MS.gene060341.t1 AT4G28640 30.137 146 70 3 93 206 89 234 3.23e-17 77.8
MS.gene060341.t1 AT4G14550 30.370 135 71 2 93 206 77 209 8.37e-17 76.3
MS.gene060341.t1 AT4G28640 30.137 146 70 3 93 206 89 234 8.41e-17 77.4
MS.gene060341.t1 AT4G14550 30.370 135 71 2 93 206 77 209 9.03e-17 76.3
MS.gene060341.t1 AT3G23030 27.160 162 83 5 61 206 21 163 1.83e-16 73.9
MS.gene060341.t1 AT3G23030 27.160 162 83 5 61 206 108 250 4.57e-16 74.7
MS.gene060341.t1 AT3G15540 33.884 121 63 2 93 206 71 181 5.26e-16 73.6
MS.gene060341.t1 AT3G17600 30.952 126 75 2 85 206 37 154 5.35e-16 72.4
MS.gene060341.t1 AT5G65670 30.657 137 69 3 93 206 184 317 5.55e-16 75.5
MS.gene060341.t1 AT5G65670 30.657 137 69 3 93 206 184 317 5.59e-16 75.5
MS.gene060341.t1 AT2G22670 32.609 138 66 5 93 206 166 300 2.56e-15 73.6
MS.gene060341.t1 AT2G22670 32.609 138 66 5 93 206 166 300 2.56e-15 73.6
MS.gene060341.t1 AT2G22670 32.609 138 66 5 93 206 166 300 2.73e-15 73.2
MS.gene060341.t1 AT2G22670 32.609 138 66 5 93 206 166 300 2.73e-15 73.2
MS.gene060341.t1 AT2G22670 32.609 138 66 5 93 206 183 317 3.68e-15 73.2
MS.gene060341.t1 AT1G15580 33.333 120 58 5 93 206 54 157 7.60e-15 69.7
MS.gene060341.t1 AT1G52830 31.667 120 61 4 94 206 72 177 1.98e-14 68.9
MS.gene060341.t1 AT3G23050 28.387 155 84 2 79 206 69 223 3.11e-14 69.3
MS.gene060341.t1 AT1G51950 27.907 172 86 3 72 206 77 247 4.28e-14 69.3
MS.gene060341.t1 AT1G04250 27.941 136 68 3 93 206 83 210 3.38e-13 66.2
MS.gene060341.t1 AT3G16500 27.397 146 74 3 93 206 104 249 3.48e-13 67.0
MS.gene060341.t1 AT3G16500 27.397 146 74 3 93 206 104 249 3.92e-13 66.6
MS.gene060341.t1 AT4G29080 27.273 143 75 3 93 206 144 286 4.82e-13 67.0
MS.gene060341.t1 AT4G32280 26.471 204 109 7 1 168 1 199 8.23e-13 64.7
MS.gene060341.t1 AT3G04730 25.000 152 71 4 93 206 71 217 1.12e-12 65.1
MS.gene060341.t1 AT3G62100 39.759 83 42 1 130 204 84 166 1.13e-12 63.9
MS.gene060341.t1 AT2G46990 38.554 83 43 1 130 204 86 168 2.48e-12 63.2
MS.gene060341.t1 AT4G14550 29.752 121 62 2 93 192 77 195 3.80e-12 63.2
MS.gene060341.t1 AT1G15050 36.170 94 50 2 123 206 52 145 6.88e-12 61.2
MS.gene060341.t1 AT4G14560 32.941 85 49 1 130 206 76 160 1.06e-11 61.2
MS.gene060341.t1 AT1G15050 37.647 85 46 1 129 206 93 177 1.34e-11 61.2

Find 47 sgRNAs with CRISPR-Local

Find 119 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCTTTGAATCATGATAAT+AGG 0.233271 8.3:-12174740 MS.gene060341:CDS
TCTGAGTGGCCAGGAGTTAA+TGG 0.256229 8.3:+12174648 None:intergenic
CAAACATGTCCATCAAAGTT+TGG 0.287284 8.3:+12174240 None:intergenic
TACTCTCAACCAAACTTTGA+TGG 0.301864 8.3:-12174249 MS.gene060341:CDS
GAATTACGTGAAGGTGAAAA+TGG 0.315246 8.3:-12174324 MS.gene060341:CDS
TCACAATATGGAGCTTCATT+TGG 0.317095 8.3:-12174826 None:intergenic
GAGAGAAAGAGTGGGAAGGT+TGG 0.357245 8.3:+12174674 None:intergenic
CACAATATGGAGCTTCATTT+GGG 0.385933 8.3:-12174825 None:intergenic
ATCAAGACAAAGAAGGTGAT+TGG 0.388129 8.3:-12174060 MS.gene060341:CDS
TTCTTCCTCCTACAATTAAC+CGG 0.390508 8.3:+12174416 None:intergenic
CCCTGCTCTTAAGCAATTTG+AGG 0.399232 8.3:+12172655 None:intergenic
TTCTTGCTCAAGATATTTCA+TGG 0.399762 8.3:-12174036 MS.gene060341:CDS
GATGGCCTCCGGTTAATTGT+AGG 0.427386 8.3:-12174424 MS.gene060341:CDS
GATCACGTGGTCCCCATTGA+TGG 0.439591 8.3:-12174365 MS.gene060341:CDS
CTGAGTGGCCAGGAGTTAAT+GGG 0.451365 8.3:+12174649 None:intergenic
GATGATGAAGAAGCTCTTGT+TGG 0.454535 8.3:-12174446 MS.gene060341:CDS
TAATGGGAGGAGAGAAAGAG+TGG 0.454609 8.3:+12174665 None:intergenic
TCTCTCCTCCCATTAACTCC+TGG 0.458165 8.3:-12174657 MS.gene060341:CDS
AGAAAGAGTGGGAAGGTTGG+TGG 0.462033 8.3:+12174677 None:intergenic
ATGGTTCTCATGATAATCAT+AGG 0.480012 8.3:-12174346 MS.gene060341:CDS
ATTATCATGAGAACCATCAA+TGG 0.488136 8.3:+12174352 None:intergenic
AGCTCTTGTTGGATGGCCTC+CGG 0.493311 8.3:-12174435 MS.gene060341:CDS
TTACTTGGTGATGGTGGTAG+TGG 0.498349 8.3:+12174587 None:intergenic
TGATCAACAACAGTATGAAC+TGG 0.501567 8.3:-12174086 MS.gene060341:CDS
TTATCATGAGAACCATCAAT+GGG 0.508335 8.3:+12174353 None:intergenic
TATTAATTACTTGGTGATGG+TGG 0.510150 8.3:+12174581 None:intergenic
TAATATTAATTACTTGGTGA+TGG 0.522964 8.3:+12174578 None:intergenic
CGGACGAGAATTATTATAAG+TGG 0.529450 8.3:+12174791 None:intergenic
CTGGTTTATCAAGACAAAGA+AGG 0.557412 8.3:-12174067 MS.gene060341:CDS
GGTTGAGAGTATGAAATGAA+TGG 0.558722 8.3:+12174261 None:intergenic
TCATGATCATCTGAGTGGCC+AGG 0.559365 8.3:+12174639 None:intergenic
GGAGGAGAGAAAGAGTGGGA+AGG 0.576479 8.3:+12174670 None:intergenic
AATGGGAGGAGAGAAAGAGT+GGG 0.579242 8.3:+12174666 None:intergenic
ATGAAGAAGCTCTTGTTGGA+TGG 0.580018 8.3:-12174442 MS.gene060341:CDS
TATCATGATTCAAAGAGAAG+TGG 0.584987 8.3:+12174745 None:intergenic
TACGTGAAGGTGAAAATGGA+AGG 0.594315 8.3:-12174320 MS.gene060341:CDS
GGCCTCCGGTTAATTGTAGG+AGG 0.613414 8.3:-12174421 MS.gene060341:CDS
AGGTGTAGGAATAGCTCGAA+AGG 0.621460 8.3:-12174300 MS.gene060341:CDS
TTAGTAGCAGCAATATCGTA+CGG 0.636596 8.3:+12174771 None:intergenic
TTCCTCCTACAATTAACCGG+AGG 0.665193 8.3:+12174419 None:intergenic
AAGGTGAAAATGGAAGGTGT+AGG 0.668997 8.3:-12174314 MS.gene060341:CDS
TAATCATAGGAATTACGTGA+AGG 0.675805 8.3:-12174333 MS.gene060341:CDS
AGTGGCCAGGAGTTAATGGG+AGG 0.697461 8.3:+12174652 None:intergenic
TTGCTCAAGATATTTCATGG+AGG 0.720826 8.3:-12174033 MS.gene060341:intron
CATGATCATGATCATCTGAG+TGG 0.721603 8.3:+12174634 None:intergenic
AAATGATGTTGAAGATCACG+TGG 0.746908 8.3:-12174378 MS.gene060341:CDS
TATCATGAGAACCATCAATG+GGG 0.763816 8.3:+12174354 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAATTAAAGTTGTAT+TGG + chr8.3:12174355-12174374 None:intergenic 10.0%
!! AACTAATAATATTAATTACT+TGG + chr8.3:12172911-12172930 None:intergenic 10.0%
!! AATAAATGATGTATATAATT+TGG - chr8.3:12174063-12174082 MS.gene060341:CDS 10.0%
!! GTACATTAATATTATTTATA+TGG - chr8.3:12172965-12172984 MS.gene060341:intron 10.0%
!! GTATAAGAATATAAATTATA+TGG + chr8.3:12174261-12174280 None:intergenic 10.0%
!! TAGAGATTAAAAAAAATATA+AGG - chr8.3:12173678-12173697 MS.gene060341:intron 10.0%
!! TTCACATATATTAAAAAAAT+TGG + chr8.3:12174661-12174680 None:intergenic 10.0%
!!! ATAAGAAAAATATTCTTTTA+AGG - chr8.3:12174033-12174052 MS.gene060341:intron 10.0%
!!! TTTTTTCTTATATTTGAAAT+CGG - chr8.3:12174613-12174632 MS.gene060341:CDS 10.0%
!! GAAAAAAAAATTCATTGTTT+AGG + chr8.3:12174600-12174619 None:intergenic 15.0%
!! TTCAATGAATGTTTATAATT+AGG + chr8.3:12173514-12173533 None:intergenic 15.0%
!!! ATTAGTAGTACTAATTATTT+TGG + chr8.3:12173307-12173326 None:intergenic 15.0%
!!! ATTTTTCTTATATTTGAGAA+GGG + chr8.3:12174024-12174043 None:intergenic 15.0%
!!! TATTTTTCTTATATTTGAGA+AGG + chr8.3:12174025-12174044 None:intergenic 15.0%
!! AAAAAAAATATAAGGAGCAA+AGG - chr8.3:12173686-12173705 MS.gene060341:intron 20.0%
!! AAAAAGAAAAAACCAACATT+AGG - chr8.3:12173730-12173749 MS.gene060341:intron 20.0%
!! AAATGGAATGAAATAATCAT+TGG + chr8.3:12174496-12174515 None:intergenic 20.0%
!! AAGTACTAACATTGAAATAT+TGG + chr8.3:12172939-12172958 None:intergenic 20.0%
!! ATATGTGAAATATGAAATCA+GGG - chr8.3:12174672-12174691 MS.gene060341:CDS 20.0%
!! TATATGTGAAATATGAAATC+AGG - chr8.3:12174671-12174690 MS.gene060341:CDS 20.0%
!! TTGAAAGATGACTTATAATT+AGG + chr8.3:12173557-12173576 None:intergenic 20.0%
!!! GTCTTTTTCTTATAAAGTAA+GGG - chr8.3:12174448-12174467 MS.gene060341:CDS 20.0%
!!! TAATATTAATTACTTGGTGA+TGG + chr8.3:12172905-12172924 None:intergenic 20.0%
!!! TGTCTTTTTCTTATAAAGTA+AGG - chr8.3:12174447-12174466 MS.gene060341:CDS 20.0%
!!! TTGGTTTTTTCTTTTTTGTT+TGG + chr8.3:12173726-12173745 None:intergenic 20.0%
! AAATATGAAATCAGGGTTTA+GGG - chr8.3:12174679-12174698 MS.gene060341:CDS 25.0%
! AAATTGTGTGAAAGAAAAGT+TGG + chr8.3:12174405-12174424 None:intergenic 25.0%
! AGTTTGCATTAAAATGTGTT+AGG - chr8.3:12173626-12173645 MS.gene060341:intron 25.0%
! CAAACTTTCTCTAACAATTA+AGG - chr8.3:12174724-12174743 MS.gene060341:CDS 25.0%
! CTAAATAAAACTTGTGTGTT+TGG - chr8.3:12174772-12174791 MS.gene060341:CDS 25.0%
! GTATATATAGTGTATATGCA+CGG - chr8.3:12173335-12173354 MS.gene060341:intron 25.0%
! TCTCTTTGAATCATGATAAT+AGG - chr8.3:12172740-12172759 MS.gene060341:intron 25.0%
! TGTTTATAATTAGGCATACA+AGG + chr8.3:12173505-12173524 None:intergenic 25.0%
! TTAGTACTACTAATTAGTTG+AGG - chr8.3:12173313-12173332 MS.gene060341:intron 25.0%
!! AAAAGTTGGAGTATTTATTG+AGG + chr8.3:12174391-12174410 None:intergenic 25.0%
!! AAAGTTGGAGTATTTATTGA+GGG + chr8.3:12174390-12174409 None:intergenic 25.0%
ACATGTTAAGCAACCTAAAA+AGG + chr8.3:12174212-12174231 None:intergenic 30.0%
ACTTAACTAAGACCTAATGT+TGG + chr8.3:12173745-12173764 None:intergenic 30.0%
ATGGTTCTCATGATAATCAT+AGG - chr8.3:12173134-12173153 MS.gene060341:intron 30.0%
ATTATCATGAGAACCATCAA+TGG + chr8.3:12173131-12173150 None:intergenic 30.0%
CATGTTAAGCAACCTAAAAA+GGG + chr8.3:12174211-12174230 None:intergenic 30.0%
CATTAAAATGTGTTAGGAGT+TGG - chr8.3:12173632-12173651 MS.gene060341:intron 30.0%
GAAATATGAAATCAGGGTTT+AGG - chr8.3:12174678-12174697 MS.gene060341:CDS 30.0%
GTATTTATTGAGGGTAAAGT+TGG + chr8.3:12174381-12174400 None:intergenic 30.0%
TAATCATAGGAATTACGTGA+AGG - chr8.3:12173147-12173166 MS.gene060341:intron 30.0%
TATCATGATTCAAAGAGAAG+TGG + chr8.3:12172738-12172757 None:intergenic 30.0%
TATCATTAATTAGTGCAAGC+TGG - chr8.3:12173474-12173493 MS.gene060341:intron 30.0%
TCATGTAGTTGGAAATTAAC+AGG - chr8.3:12173365-12173384 MS.gene060341:intron 30.0%
TTATCATGAGAACCATCAAT+GGG + chr8.3:12173130-12173149 None:intergenic 30.0%
TTCTTGCTCAAGATATTTCA+TGG - chr8.3:12173444-12173463 MS.gene060341:intron 30.0%
! AAGTGACACTCATTTTGTAA+CGG + chr8.3:12174289-12174308 None:intergenic 30.0%
! AGGGTTTAGGGTTTATAATT+AGG - chr8.3:12174691-12174710 MS.gene060341:CDS 30.0%
! GGGTTTAGGGTTTATAATTA+GGG - chr8.3:12174692-12174711 MS.gene060341:CDS 30.0%
!! TATTAATTACTTGGTGATGG+TGG + chr8.3:12172902-12172921 None:intergenic 30.0%
AAAATGTGTTAGGAGTTGGA+AGG - chr8.3:12173636-12173655 MS.gene060341:intron 35.0%
AAATATAAGGAGCAAAGGTG+TGG - chr8.3:12173691-12173710 MS.gene060341:intron 35.0%
AAATGATGTTGAAGATCACG+TGG - chr8.3:12173102-12173121 MS.gene060341:intron 35.0%
ACGGCATTAATTCATGTAGT+TGG - chr8.3:12173354-12173373 MS.gene060341:intron 35.0%
AGTGAAAGTCTATGTGAACT+AGG - chr8.3:12173879-12173898 MS.gene060341:intron 35.0%
ATCAAGACAAAGAAGGTGAT+TGG - chr8.3:12173420-12173439 MS.gene060341:intron 35.0%
CAAACATGTCCATCAAAGTT+TGG + chr8.3:12173243-12173262 None:intergenic 35.0%
CGGACGAGAATTATTATAAG+TGG + chr8.3:12172692-12172711 None:intergenic 35.0%
CTGGTTTATCAAGACAAAGA+AGG - chr8.3:12173413-12173432 MS.gene060341:intron 35.0%
GAATTACGTGAAGGTGAAAA+TGG - chr8.3:12173156-12173175 MS.gene060341:intron 35.0%
TACTCTCAACCAAACTTTGA+TGG - chr8.3:12173231-12173250 MS.gene060341:intron 35.0%
TATCATGAGAACCATCAATG+GGG + chr8.3:12173129-12173148 None:intergenic 35.0%
TGATCAACAACAGTATGAAC+TGG - chr8.3:12173394-12173413 MS.gene060341:intron 35.0%
TTAGTAGCAGCAATATCGTA+CGG + chr8.3:12172712-12172731 None:intergenic 35.0%
TTCTTCCTCCTACAATTAAC+CGG + chr8.3:12173067-12173086 None:intergenic 35.0%
TTGCTCAAGATATTTCATGG+AGG - chr8.3:12173447-12173466 MS.gene060341:intron 35.0%
TTGGCACACAGATTAAGAAA+TGG + chr8.3:12174513-12174532 None:intergenic 35.0%
! AACAACCTCTTCTCTTTTCT+GGG + chr8.3:12173831-12173850 None:intergenic 35.0%
! AATGCAAAGTTGCCCTTTTT+AGG - chr8.3:12174196-12174215 MS.gene060341:intron 35.0%
! ACGTAGTTTTTCTCAACTCT+TGG - chr8.3:12172765-12172784 MS.gene060341:intron 35.0%
! GGTTGAGAGTATGAAATGAA+TGG + chr8.3:12173222-12173241 None:intergenic 35.0%
!! AAGCGACACTCATTTTGAAA+CGG - chr8.3:12174539-12174558 MS.gene060341:intron 35.0%
!! AATGTTAATTTGTGCCCTCA+AGG - chr8.3:12174088-12174107 MS.gene060341:CDS 35.0%
!! ATGTTAATTTGTGCCCTCAA+GGG - chr8.3:12174089-12174108 MS.gene060341:CDS 35.0%
!! CATGTTAACTTGTGTCCTAA+GGG + chr8.3:12174236-12174255 None:intergenic 35.0%
!! TCATGTTAACTTGTGTCCTA+AGG + chr8.3:12174237-12174256 None:intergenic 35.0%
!!! CTAGGCATGGTAAGTTTTTT+TGG - chr8.3:12173897-12173916 MS.gene060341:intron 35.0%
AAGAGAAGAGGTTGTTGTCA+TGG - chr8.3:12173835-12173854 MS.gene060341:intron 40.0%
AAGTCTATGTGAACTAGGCA+TGG - chr8.3:12173884-12173903 MS.gene060341:intron 40.0%
ATGAAGAAGCTCTTGTTGGA+TGG - chr8.3:12173038-12173057 MS.gene060341:intron 40.0%
CATGATCATGATCATCTGAG+TGG + chr8.3:12172849-12172868 None:intergenic 40.0%
GATGATGAAGAAGCTCTTGT+TGG - chr8.3:12173034-12173053 MS.gene060341:intron 40.0%
TACGTGAAGGTGAAAATGGA+AGG - chr8.3:12173160-12173179 MS.gene060341:intron 40.0%
! AAGGTGAAAATGGAAGGTGT+AGG - chr8.3:12173166-12173185 MS.gene060341:intron 40.0%
! CAACAACCTCTTCTCTTTTC+TGG + chr8.3:12173832-12173851 None:intergenic 40.0%
!! GACACTCATTTTGTAACGGA+AGG + chr8.3:12174285-12174304 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr8.3:12174543-12174562 MS.gene060341:intron 40.0%
AATGGGAGGAGAGAAAGAGT+GGG + chr8.3:12172817-12172836 None:intergenic 45.0%
AGGTGTAGGAATAGCTCGAA+AGG - chr8.3:12173180-12173199 MS.gene060341:intron 45.0%
GTGTTAGGAGTTGGAAGGAT+GGG - chr8.3:12173641-12173660 MS.gene060341:intron 45.0%
GTTGCTTAACATGTGCCCTT+AGG - chr8.3:12174218-12174237 MS.gene060341:intron 45.0%
TAATGGGAGGAGAGAAAGAG+TGG + chr8.3:12172818-12172837 None:intergenic 45.0%
TCCTTAACATGTGCCCTTGA+GGG + chr8.3:12174105-12174124 None:intergenic 45.0%
TGAAGCCCAGAAAAGAGAAG+AGG - chr8.3:12173823-12173842 MS.gene060341:intron 45.0%
TGTGTTAGGAGTTGGAAGGA+TGG - chr8.3:12173640-12173659 MS.gene060341:intron 45.0%
TTCCTCCTACAATTAACCGG+AGG + chr8.3:12173064-12173083 None:intergenic 45.0%
TTCCTTAACATGTGCCCTTG+AGG + chr8.3:12174106-12174125 None:intergenic 45.0%
!! ATGAGTGTCGCTTTACGCTT+TGG + chr8.3:12174532-12174551 None:intergenic 45.0%
!! TTACTTGGTGATGGTGGTAG+TGG + chr8.3:12172896-12172915 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr8.3:12174542-12174561 MS.gene060341:intron 45.0%
!! TATAAGAATATAAATTATAT+GGG + chr8.3:12174260-12174279 None:intergenic 5.0%
!! TTAATTTATTTGATTAATTT+AGG - chr8.3:12173002-12173021 MS.gene060341:intron 5.0%
AGAAAGAGTGGGAAGGTTGG+TGG + chr8.3:12172806-12172825 None:intergenic 50.0%
CTGAGTGGCCAGGAGTTAAT+GGG + chr8.3:12172834-12172853 None:intergenic 50.0%
GAGAGAAAGAGTGGGAAGGT+TGG + chr8.3:12172809-12172828 None:intergenic 50.0%
GATGGCCTCCGGTTAATTGT+AGG - chr8.3:12173056-12173075 MS.gene060341:intron 50.0%
TCATGATCATCTGAGTGGCC+AGG + chr8.3:12172844-12172863 None:intergenic 50.0%
TCTCTCCTCCCATTAACTCC+TGG - chr8.3:12172823-12172842 MS.gene060341:intron 50.0%
TCTGAGTGGCCAGGAGTTAA+TGG + chr8.3:12172835-12172854 None:intergenic 50.0%
AGCTCTTGTTGGATGGCCTC+CGG - chr8.3:12173045-12173064 MS.gene060341:intron 55.0%
AGTGGCCAGGAGTTAATGGG+AGG + chr8.3:12172831-12172850 None:intergenic 55.0%
GATCACGTGGTCCCCATTGA+TGG - chr8.3:12173115-12173134 MS.gene060341:intron 55.0%
GGAGGAGAGAAAGAGTGGGA+AGG + chr8.3:12172813-12172832 None:intergenic 55.0%
GGCCTCCGGTTAATTGTAGG+AGG - chr8.3:12173059-12173078 MS.gene060341:intron 55.0%
! GCCCTCAAGGGCACATGTTA+AGG - chr8.3:12174101-12174120 MS.gene060341:intron 55.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 12172661 12174841 12172661 ID=MS.gene060341
chr8.3 mRNA 12172661 12174841 12172661 ID=MS.gene060341.t1;Parent=MS.gene060341
chr8.3 exon 12174591 12174841 12174591 ID=MS.gene060341.t1.exon1;Parent=MS.gene060341.t1
chr8.3 CDS 12174591 12174841 12174591 ID=cds.MS.gene060341.t1;Parent=MS.gene060341.t1
chr8.3 exon 12174234 12174478 12174234 ID=MS.gene060341.t1.exon2;Parent=MS.gene060341.t1
chr8.3 CDS 12174234 12174478 12174234 ID=cds.MS.gene060341.t1;Parent=MS.gene060341.t1
chr8.3 exon 12174034 12174115 12174034 ID=MS.gene060341.t1.exon3;Parent=MS.gene060341.t1
chr8.3 CDS 12174034 12174115 12174034 ID=cds.MS.gene060341.t1;Parent=MS.gene060341.t1
chr8.3 exon 12172661 12172701 12172661 ID=MS.gene060341.t1.exon4;Parent=MS.gene060341.t1
chr8.3 CDS 12172661 12172701 12172661 ID=cds.MS.gene060341.t1;Parent=MS.gene060341.t1
Gene Sequence

>MS.gene060341

ATGGAGCTTCATTTGGGTCTTGCTCTCTCCACTTATAATAATTCTCGTCCGTACGATATTGCTGCTACTAATAGCCACTTCTCTTTGAATCATGATAATAGGAAACGTAGTTTTTCTCAACTCTTGGAGCATGCAGCAGAAACCACCAACCTTCCCACTCTTTCTCTCCTCCCATTAACTCCTGGCCACTCAGATGATCATGATCATGATGATCAACACTGCTCTCACAGCTCCACTACCACCATCACCAAGTAATTAATATTATTAGTTACTCTCCAATATTTCAATGTTAGTACTTAGTATAGTACATTAATATTATTTATATGGTATATTGAATATTATTAATTTATTTGATTAATTTAGGAGCAATGAAGATGATGAAGAAGCTCTTGTTGGATGGCCTCCGGTTAATTGTAGGAGGAAGAAAATTCGTTCTAATGAAAATGATGTTGAAGATCACGTGGTCCCCATTGATGGTTCTCATGATAATCATAGGAATTACGTGAAGGTGAAAATGGAAGGTGTAGGAATAGCTCGAAAGGTTAATCTTAGCATGCACCATTCATTTCATACTCTCAACCAAACTTTGATGGACATGTTTGAAAAATGTACGTCTTCTTTATTCAAATTTCTAATTAAATTTCCAAAATAATTAGTACTACTAATTAGTTGAGGTATATATAGTGTATATGCACGGCATTAATTCATGTAGTTGGAAATTAACAGGTGATCATGATCAACAACAGTATGAACTGGTTTATCAAGACAAAGAAGGTGATTGGCTTCTTGCTCAAGATATTTCATGGAGGTAATTATCATTAATTAGTGCAAGCTGGCTACTCCTTGTATGCCTAATTATAAACATTCATTGAAAAAAGATTGTCTCTTAATTGCCTAATTATAAGTCATCTTTCAAATTATAAGATGTCTATATTATCTTAAACATGATCTTAATTAATACTATTAGTTTGCATTAAAATGTGTTAGGAGTTGGAAGGATGGGTAGCTCACTTAATTTAGAGATTAAAAAAAATATAAGGAGCAAAGGTGTGGAGTTCGAATCCAAACAAAAAAGAAAAAACCAACATTAGGTCTTAGTTAAGTCAAAGAAAATGTTACATATAGACTAAATTAAAGTGCATATTGTTAATTGTTATGTGAATGAAGCCCAGAAAAGAGAAGAGGTTGTTGTCATGGTGTCAATGCTAATGCTAATAGAGTGAAAGTCTATGTGAACTAGGCATGGTAAGTTTTTTTGGTTGAACACTCAACATGTATTTAACTACTAACAAAAAGTCAATATTAAATACATCTATACACAAGATTATGATATTAGTTATACACAAAATAAATACTCACTCCCTTCTCAAATATAAGAAAAATATTCTTTTAAGGTTTTTTTAATAAATGATGTATATAATTTGGCAAATGTTAATTTGTGCCCTCAAGGGCACATGTTAAGGAACTTATTAAAGAAATATACGTATAAAAAGTTGTGCATTCAACTTCTTAAAAGTTGATATATTATGTTTTTCAATGCAAAGTTGCCCTTTTTAGGTTGCTTAACATGTGCCCTTAGGACACAAGTTAACATGACCCATATAATTTATATTCTTATACTCCTTCCGTTACAAAATGAGTGTCACTTTAGCAAAAAAAAATTATTTCAAAATGAATGTCACTTTACATTTCCAATACAACTTTAATTTTTTTTCTTCCAACTTTACCCTCAATAAATACTCCAACTTTTCTTTCACACAATTTTCAATTAATGCAACTTTAATTTTGTCTTTTTCTTATAAAGTAAGGGCAGTTTAGTAAGAGCGTTATATCCAATGATTATTTCATTCCATTTCTTAATCTGTGTGCCAAAGCGTAAAGCGACACTCATTTTGAAACGGAGGGAGTAAATCAGATACATCATTTATTCAATAAACCTAAACAATGAATTTTTTTTTCTTATATTTGAAATCGGAGAGAGTACATCACTTACACTACCAATTTTTTTAATATATGTGAAATATGAAATCAGGGTTTAGGGTTTATAATTAGGGAATTTTAAGCAAACTTTCTCTAACAATTAAGGAATGCATGTTCTAGTATTTTCTGTTCTAAATAAAACTTGTGTGTTTGGTTGCAGAAGTTTCATTGAATGTGCGCAACGCCTCAAATTGCTTAAGA

Protein sequence

>MS.gene060341.t1

MELHLGLALSTYNNSRPYDIAATNSHFSLNHDNRKRSFSQLLEHAAETTNLPTLSLLPLTPGHSDDHDHDDQHCSHSSTTTITKSNEDDEEALVGWPPVNCRRKKIRSNENDVEDHVVPIDGSHDNHRNYVKVKMEGVGIARKVNLSMHHSFHTLNQTLMDMFEKCDHDQQQYELVYQDKEGDWLLAQDISWRSFIECAQRLKLLK