Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21853.t1 | XP_003610830.1 | 99.5 | 399 | 2 | 0 | 1 | 399 | 1 | 399 | 1.20E-218 | 768.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21853.t1 | Q9LFL3 | 68.9 | 411 | 112 | 6 | 1 | 399 | 1 | 407 | 1.4e-146 | 520.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21853.t1 | G7K569 | 99.5 | 399 | 2 | 0 | 1 | 399 | 1 | 399 | 8.6e-219 | 768.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04918 | MS.gene21853 | 0.819444 | 1.16E-52 | -1.69E-46 |
| MS.gene04920 | MS.gene21853 | 0.802442 | 5.60E-49 | -1.69E-46 |
| MS.gene049283 | MS.gene21853 | 0.863751 | 1.99E-64 | -1.69E-46 |
| MS.gene049499 | MS.gene21853 | 0.820959 | 5.21E-53 | -1.69E-46 |
| MS.gene049983 | MS.gene21853 | 0.845056 | 5.15E-59 | -1.69E-46 |
| MS.gene050213 | MS.gene21853 | 0.807749 | 4.34E-50 | -1.69E-46 |
| MS.gene050359 | MS.gene21853 | 0.80686 | 6.70E-50 | -1.69E-46 |
| MS.gene050379 | MS.gene21853 | 0.808201 | 3.48E-50 | -1.69E-46 |
| MS.gene050414 | MS.gene21853 | 0.807348 | 5.28E-50 | -1.69E-46 |
| MS.gene050571 | MS.gene21853 | 0.837492 | 5.03E-57 | -1.69E-46 |
| MS.gene050646 | MS.gene21853 | 0.847502 | 1.11E-59 | -1.69E-46 |
| MS.gene050654 | MS.gene21853 | 0.840832 | 6.86E-58 | -1.69E-46 |
| MS.gene050737 | MS.gene21853 | 0.800633 | 1.32E-48 | -1.69E-46 |
| MS.gene050945 | MS.gene21853 | 0.82025 | 7.57E-53 | -1.69E-46 |
| MS.gene051003 | MS.gene21853 | 0.827525 | 1.49E-54 | -1.69E-46 |
| MS.gene051234 | MS.gene21853 | 0.842533 | 2.44E-58 | -1.69E-46 |
| MS.gene051343 | MS.gene21853 | 0.821875 | 3.20E-53 | -1.69E-46 |
| MS.gene051490 | MS.gene21853 | 0.808326 | 3.27E-50 | -1.69E-46 |
| MS.gene051637 | MS.gene21853 | 0.805642 | 1.21E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene21853 | 0.809435 | 1.89E-50 | -1.69E-46 |
| MS.gene051959 | MS.gene21853 | 0.802693 | 4.97E-49 | -1.69E-46 |
| MS.gene051960 | MS.gene21853 | 0.805782 | 1.13E-49 | -1.69E-46 |
| MS.gene051975 | MS.gene21853 | 0.824847 | 6.46E-54 | -1.69E-46 |
| MS.gene052016 | MS.gene21853 | 0.84017 | 1.02E-57 | -1.69E-46 |
| MS.gene052118 | MS.gene21853 | 0.846681 | 1.86E-59 | -1.69E-46 |
| MS.gene052307 | MS.gene21853 | 0.812554 | 4.00E-51 | -1.69E-46 |
| MS.gene052463 | MS.gene21853 | 0.817353 | 3.45E-52 | -1.69E-46 |
| MS.gene052533 | MS.gene21853 | 0.815068 | 1.12E-51 | -1.69E-46 |
| MS.gene052609 | MS.gene21853 | 0.824182 | 9.27E-54 | -1.69E-46 |
| MS.gene053143 | MS.gene21853 | 0.819886 | 9.18E-53 | -1.69E-46 |
| MS.gene053620 | MS.gene21853 | 0.828793 | 7.38E-55 | -1.69E-46 |
| MS.gene053726 | MS.gene21853 | 0.827041 | 1.95E-54 | -1.69E-46 |
| MS.gene053931 | MS.gene21853 | 0.807935 | 3.96E-50 | -1.69E-46 |
| MS.gene054004 | MS.gene21853 | 0.803128 | 4.04E-49 | -1.69E-46 |
| MS.gene054178 | MS.gene21853 | 0.820209 | 7.74E-53 | -1.69E-46 |
| MS.gene054892 | MS.gene21853 | 0.909829 | 3.69E-82 | -1.69E-46 |
| MS.gene054893 | MS.gene21853 | 0.908786 | 1.17E-81 | -1.69E-46 |
| MS.gene054957 | MS.gene21853 | 0.842417 | 2.62E-58 | -1.69E-46 |
| MS.gene055513 | MS.gene21853 | 0.84353 | 1.32E-58 | -1.69E-46 |
| MS.gene056677 | MS.gene21853 | 0.808361 | 3.22E-50 | -1.69E-46 |
| MS.gene056699 | MS.gene21853 | 0.874995 | 4.37E-68 | -1.69E-46 |
| MS.gene056831 | MS.gene21853 | 0.807778 | 4.28E-50 | -1.69E-46 |
| MS.gene05686 | MS.gene21853 | 0.835186 | 1.94E-56 | -1.69E-46 |
| MS.gene056973 | MS.gene21853 | 0.806161 | 9.41E-50 | -1.69E-46 |
| MS.gene057034 | MS.gene21853 | 0.834761 | 2.49E-56 | -1.69E-46 |
| MS.gene057102 | MS.gene21853 | 0.851996 | 6.17E-61 | -1.69E-46 |
| MS.gene057155 | MS.gene21853 | 0.808906 | 2.46E-50 | -1.69E-46 |
| MS.gene057174 | MS.gene21853 | 0.828614 | 8.15E-55 | -1.69E-46 |
| MS.gene057208 | MS.gene21853 | 0.819414 | 1.18E-52 | -1.69E-46 |
| MS.gene057622 | MS.gene21853 | 0.844747 | 6.24E-59 | -1.69E-46 |
| MS.gene058095 | MS.gene21853 | 0.883315 | 4.98E-71 | -1.69E-46 |
| MS.gene058159 | MS.gene21853 | 0.820031 | 8.50E-53 | -1.69E-46 |
| MS.gene058429 | MS.gene21853 | 0.821455 | 4.00E-53 | -1.69E-46 |
| MS.gene058592 | MS.gene21853 | 0.838494 | 2.78E-57 | -1.69E-46 |
| MS.gene058781 | MS.gene21853 | 0.814876 | 1.23E-51 | -1.69E-46 |
| MS.gene05878 | MS.gene21853 | 0.802823 | 4.67E-49 | -1.69E-46 |
| MS.gene059144 | MS.gene21853 | 0.801749 | 7.77E-49 | -1.69E-46 |
| MS.gene059146 | MS.gene21853 | 0.827908 | 1.21E-54 | -1.69E-46 |
| MS.gene059170 | MS.gene21853 | 0.851996 | 6.16E-61 | -1.69E-46 |
| MS.gene05952 | MS.gene21853 | 0.834247 | 3.35E-56 | -1.69E-46 |
| MS.gene059686 | MS.gene21853 | 0.800361 | 1.49E-48 | -1.69E-46 |
| MS.gene059774 | MS.gene21853 | 0.820424 | 6.91E-53 | -1.69E-46 |
| MS.gene05985 | MS.gene21853 | -0.855537 | 5.91E-62 | -1.69E-46 |
| MS.gene059901 | MS.gene21853 | -0.815214 | 1.04E-51 | -1.69E-46 |
| MS.gene059965 | MS.gene21853 | 0.805633 | 1.21E-49 | -1.69E-46 |
| MS.gene06023 | MS.gene21853 | 0.817661 | 2.94E-52 | -1.69E-46 |
| MS.gene060259 | MS.gene21853 | 0.844277 | 8.35E-59 | -1.69E-46 |
| MS.gene060338 | MS.gene21853 | 0.813172 | 2.93E-51 | -1.69E-46 |
| MS.gene060413 | MS.gene21853 | 0.824819 | 6.57E-54 | -1.69E-46 |
| MS.gene060522 | MS.gene21853 | 0.861541 | 9.55E-64 | -1.69E-46 |
| MS.gene060697 | MS.gene21853 | 0.81768 | 2.91E-52 | -1.69E-46 |
| MS.gene060932 | MS.gene21853 | 0.836167 | 1.10E-56 | -1.69E-46 |
| MS.gene060933 | MS.gene21853 | 0.834192 | 3.45E-56 | -1.69E-46 |
| MS.gene060935 | MS.gene21853 | 0.824884 | 6.34E-54 | -1.69E-46 |
| MS.gene060937 | MS.gene21853 | 0.840847 | 6.79E-58 | -1.69E-46 |
| MS.gene061100 | MS.gene21853 | 0.839808 | 1.27E-57 | -1.69E-46 |
| MS.gene061160 | MS.gene21853 | 0.806225 | 9.12E-50 | -1.69E-46 |
| MS.gene061188 | MS.gene21853 | 0.832177 | 1.10E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21853.t1 | MTR_5g007480 | 99.499 | 399 | 2 | 0 | 1 | 399 | 1 | 399 | 0.0 | 813 |
| MS.gene21853.t1 | MTR_4g077940 | 60.097 | 411 | 145 | 5 | 1 | 396 | 1 | 407 | 9.54e-147 | 422 |
| MS.gene21853.t1 | MTR_4g077940 | 60.097 | 411 | 145 | 5 | 1 | 396 | 28 | 434 | 1.33e-146 | 423 |
| MS.gene21853.t1 | MTR_7g097010 | 40.439 | 319 | 162 | 6 | 8 | 310 | 5 | 311 | 2.31e-69 | 225 |
| MS.gene21853.t1 | MTR_3g110108 | 34.420 | 276 | 157 | 10 | 48 | 309 | 2 | 267 | 8.12e-36 | 137 |
| MS.gene21853.t1 | MTR_3g110108 | 33.818 | 275 | 160 | 9 | 48 | 309 | 2 | 267 | 2.54e-35 | 137 |
| MS.gene21853.t1 | MTR_1g026840 | 31.387 | 274 | 167 | 9 | 48 | 309 | 2 | 266 | 2.61e-34 | 135 |
| MS.gene21853.t1 | MTR_3g088805 | 31.461 | 267 | 175 | 7 | 46 | 309 | 3 | 264 | 1.54e-30 | 122 |
| MS.gene21853.t1 | MTR_7g072310 | 30.147 | 272 | 162 | 10 | 53 | 309 | 15 | 273 | 1.73e-30 | 124 |
| MS.gene21853.t1 | MTR_3g097280 | 28.195 | 266 | 178 | 9 | 50 | 309 | 4 | 262 | 6.61e-18 | 85.9 |
| MS.gene21853.t1 | MTR_8g095280 | 26.217 | 267 | 182 | 8 | 51 | 309 | 5 | 264 | 1.22e-16 | 81.6 |
| MS.gene21853.t1 | MTR_8g099600 | 52.308 | 65 | 31 | 0 | 67 | 131 | 1 | 65 | 1.13e-15 | 71.6 |
| MS.gene21853.t1 | MTR_7g072310 | 26.168 | 214 | 130 | 10 | 111 | 309 | 1 | 201 | 1.16e-11 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21853.t1 | AT5G16880 | 70.073 | 411 | 107 | 6 | 1 | 399 | 1 | 407 | 0.0 | 539 |
| MS.gene21853.t1 | AT5G16880 | 70.073 | 411 | 107 | 6 | 1 | 399 | 1 | 407 | 0.0 | 539 |
| MS.gene21853.t1 | AT5G16880 | 70.073 | 411 | 107 | 6 | 1 | 399 | 1 | 407 | 0.0 | 539 |
| MS.gene21853.t1 | AT5G16880 | 77.003 | 287 | 60 | 2 | 1 | 282 | 1 | 286 | 4.57e-162 | 457 |
| MS.gene21853.t1 | AT1G06210 | 40.705 | 312 | 161 | 7 | 8 | 306 | 5 | 305 | 2.08e-70 | 226 |
| MS.gene21853.t1 | AT1G06210 | 40.392 | 255 | 128 | 7 | 8 | 249 | 5 | 248 | 2.25e-50 | 171 |
| MS.gene21853.t1 | AT4G32760 | 34.545 | 275 | 157 | 11 | 48 | 309 | 2 | 266 | 2.19e-39 | 147 |
| MS.gene21853.t1 | AT4G32760 | 34.307 | 274 | 159 | 10 | 48 | 309 | 2 | 266 | 7.98e-39 | 147 |
| MS.gene21853.t1 | AT4G32760 | 34.307 | 274 | 159 | 10 | 48 | 309 | 2 | 266 | 8.68e-39 | 147 |
| MS.gene21853.t1 | AT1G21380 | 31.502 | 273 | 167 | 9 | 46 | 308 | 3 | 265 | 3.96e-33 | 130 |
| MS.gene21853.t1 | AT1G76970 | 32.714 | 269 | 163 | 9 | 46 | 309 | 3 | 258 | 8.09e-32 | 125 |
| MS.gene21853.t1 | AT1G76970 | 32.714 | 269 | 163 | 9 | 46 | 309 | 3 | 258 | 8.09e-32 | 125 |
| MS.gene21853.t1 | AT1G76970 | 32.714 | 269 | 163 | 9 | 46 | 309 | 3 | 258 | 8.09e-32 | 125 |
| MS.gene21853.t1 | AT1G76970 | 32.714 | 269 | 163 | 9 | 46 | 309 | 3 | 258 | 8.09e-32 | 125 |
| MS.gene21853.t1 | AT3G08790 | 31.227 | 269 | 169 | 8 | 48 | 309 | 2 | 261 | 5.69e-30 | 122 |
| MS.gene21853.t1 | AT5G01760 | 28.819 | 288 | 176 | 9 | 52 | 321 | 26 | 302 | 2.76e-26 | 110 |
| MS.gene21853.t1 | AT2G38410 | 27.463 | 335 | 187 | 11 | 53 | 335 | 13 | 343 | 7.11e-24 | 104 |
| MS.gene21853.t1 | AT1G76970 | 31.602 | 231 | 140 | 9 | 84 | 309 | 15 | 232 | 2.48e-21 | 95.5 |
| MS.gene21853.t1 | AT1G76970 | 31.602 | 231 | 140 | 9 | 84 | 309 | 15 | 232 | 2.48e-21 | 95.5 |
| MS.gene21853.t1 | AT5G63640 | 25.940 | 266 | 184 | 8 | 51 | 309 | 5 | 264 | 7.53e-17 | 82.4 |
| MS.gene21853.t1 | AT5G63640 | 25.940 | 266 | 184 | 8 | 51 | 309 | 5 | 264 | 7.53e-17 | 82.4 |
| MS.gene21853.t1 | AT1G76970 | 30.055 | 183 | 111 | 8 | 131 | 309 | 1 | 170 | 3.86e-11 | 64.3 |
Find 82 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTCCTAGGGTTCAGTATT+TGG | 0.146715 | 5.1:-1895673 | MS.gene21853:CDS |
| GAATTTCATCATTAACATTC+AGG | 0.240701 | 5.1:+1893037 | None:intergenic |
| GTTTGAGATCAAGGGGTATT+AGG | 0.265335 | 5.1:-1894607 | MS.gene21853:CDS |
| TATTAGTAGTGCAGCTTAGA+AGG | 0.297112 | 5.1:+1892720 | None:intergenic |
| CTCAAACTGTTGTTAATAAT+AGG | 0.346651 | 5.1:-1895548 | MS.gene21853:CDS |
| GATCGAGGAGGAGTGAAAAT+TGG | 0.348941 | 5.1:+1894554 | None:intergenic |
| TAGGGTTCAGTATTTGGCTT+TGG | 0.352663 | 5.1:-1895667 | MS.gene21853:CDS |
| ACGAGCTTATCGACTTGATT+TGG | 0.353046 | 5.1:+1895828 | None:intergenic |
| GAGTTCTTGATGAGATGGTT+AGG | 0.363153 | 5.1:-1895584 | MS.gene21853:CDS |
| TCAAGGGGTATTAGGTTTCC+TGG | 0.364649 | 5.1:-1894599 | MS.gene21853:CDS |
| TTTGGTTATGATTGAAGCTT+GGG | 0.369449 | 5.1:-1895517 | MS.gene21853:CDS |
| AATGAGTTCAATGAGTTTCA+AGG | 0.404113 | 5.1:-1895871 | MS.gene21853:CDS |
| ATCAGGTTCTTCATGTGCTT+CGG | 0.421422 | 5.1:+1895791 | None:intergenic |
| TAATAATAGGAATAAAGCTT+TGG | 0.426379 | 5.1:-1895535 | MS.gene21853:CDS |
| TCAGCAGGATGTTCCTGTGC+AGG | 0.429125 | 5.1:-1894483 | MS.gene21853:CDS |
| GTTTGCAGAGTTTGAGATCA+AGG | 0.430814 | 5.1:-1894616 | MS.gene21853:intron |
| TGGATCAAGACCTGGTGTCC+AGG | 0.433352 | 5.1:-1892863 | MS.gene21853:CDS |
| ACAGGTATCATAGCTGGTTC+AGG | 0.438254 | 5.1:+1892958 | None:intergenic |
| TCAGGTTGAAGTGGAGCAAC+TGG | 0.438563 | 5.1:+1892976 | None:intergenic |
| AGATGACGAGGTGACTCATC+TGG | 0.442925 | 5.1:+1892925 | None:intergenic |
| TCATCTGGCTCGACAGCAAC+AGG | 0.445296 | 5.1:+1892940 | None:intergenic |
| GTTATCATCTTCACCGCAAC+AGG | 0.446688 | 5.1:-1894390 | MS.gene21853:CDS |
| CAGCGTATTGTTGAAACTGC+TGG | 0.453044 | 5.1:-1893087 | MS.gene21853:CDS |
| AAAGGTTCTTACCAAGTATG+AGG | 0.458529 | 5.1:-1893013 | MS.gene21853:CDS |
| TCCAGCTGGCTTTCTAATCA+AGG | 0.459682 | 5.1:+1892882 | None:intergenic |
| AGTTCTTGATGAGATGGTTA+GGG | 0.461596 | 5.1:-1895583 | MS.gene21853:CDS |
| AATTTCATCATTAACATTCA+GGG | 0.462722 | 5.1:+1893038 | None:intergenic |
| CTTTGGTTATGATTGAAGCT+TGG | 0.468467 | 5.1:-1895518 | MS.gene21853:CDS |
| TCGAGATTCATAGCCCAATC+AGG | 0.471193 | 5.1:+1895774 | None:intergenic |
| TGTCATCATTGTTCCCTCCC+TGG | 0.472644 | 5.1:+1892845 | None:intergenic |
| TGTTAATGATGAAATTCTAA+AGG | 0.474583 | 5.1:-1893031 | MS.gene21853:CDS |
| CTATTATTAACAACAGTTTG+AGG | 0.474784 | 5.1:+1895549 | None:intergenic |
| TGGTTTCAACTCCTCATACT+TGG | 0.475462 | 5.1:+1893002 | None:intergenic |
| AAGCACATGAAGAACCTGAT+TGG | 0.475758 | 5.1:-1895788 | MS.gene21853:CDS |
| AGCACATGAAGAACCTGATT+GGG | 0.475868 | 5.1:-1895787 | MS.gene21853:CDS |
| TTGTTCCCTCCCTGGACACC+AGG | 0.478367 | 5.1:+1892853 | None:intergenic |
| GGATCATGATTAAAACTCCT+AGG | 0.482292 | 5.1:-1895686 | MS.gene21853:CDS |
| AGCGTATTGTTGAAACTGCT+GGG | 0.485271 | 5.1:-1893086 | MS.gene21853:CDS |
| TCATCCACATGAGGTGGCTC+TGG | 0.486821 | 5.1:+1894521 | None:intergenic |
| TCATCTTGATGATGCTAAAG+AGG | 0.491881 | 5.1:-1892908 | MS.gene21853:CDS |
| TGAAGTGGAGCAACTGGAGG+TGG | 0.494688 | 5.1:+1892982 | None:intergenic |
| GAAGCTTGGGGAGAGTCTAC+TGG | 0.508336 | 5.1:-1895504 | MS.gene21853:CDS |
| GTAGGTAGAAAAGTAACAGA+AGG | 0.533297 | 5.1:-1895894 | MS.gene21853:CDS |
| CAGCAGGATGTTCCTGTGCA+GGG | 0.534177 | 5.1:-1894482 | MS.gene21853:CDS |
| ACTATTTCTCGCAACATCAA+AGG | 0.544546 | 5.1:+1894433 | None:intergenic |
| ACACCAGGTCTTGATCCAGC+TGG | 0.545281 | 5.1:+1892868 | None:intergenic |
| TGAAAGAGTTCTTGATGAGA+TGG | 0.547601 | 5.1:-1895589 | MS.gene21853:CDS |
| TTTGCAGAGTTTGAGATCAA+GGG | 0.548552 | 5.1:-1894615 | MS.gene21853:intron |
| TGATCCGTGCTATTAAGAAA+CGG | 0.554752 | 5.1:-1895707 | MS.gene21853:CDS |
| ACAGCAACAGGTATCATAGC+TGG | 0.557428 | 5.1:+1892952 | None:intergenic |
| AAAGCCAAATACTGAACCCT+AGG | 0.558286 | 5.1:+1895669 | None:intergenic |
| AAGGTTAAAGAATTCTTCAA+CGG | 0.559253 | 5.1:-1895852 | MS.gene21853:CDS |
| GGATCAAGACCTGGTGTCCA+GGG | 0.564963 | 5.1:-1892862 | MS.gene21853:CDS |
| TGGTCGTGATAATGAAAGCT+TGG | 0.574597 | 5.1:-1894579 | MS.gene21853:CDS |
| TCCTTGATTAGAAAGCCAGC+TGG | 0.580335 | 5.1:-1892883 | MS.gene21853:CDS |
| TATTCCGCGTCAATTTCAGC+AGG | 0.583193 | 5.1:-1894498 | MS.gene21853:CDS |
| GATCATGATTAAAACTCCTA+GGG | 0.584994 | 5.1:-1895685 | MS.gene21853:CDS |
| ATAGCTGGTTCAGGTTGAAG+TGG | 0.593332 | 5.1:+1892967 | None:intergenic |
| AAGCTTTCATTATCACGACC+AGG | 0.599613 | 5.1:+1894581 | None:intergenic |
| TGATCCGTTTCTTAATAGCA+CGG | 0.604913 | 5.1:+1895703 | None:intergenic |
| CAAGACCTGGTGTCCAGGGA+GGG | 0.606209 | 5.1:-1892858 | MS.gene21853:CDS |
| TTGCAGAGTTTGAGATCAAG+GGG | 0.612482 | 5.1:-1894614 | MS.gene21853:intron |
| TGTGCCAGAGCCACCTCATG+TGG | 0.617389 | 5.1:-1894525 | MS.gene21853:CDS |
| AGGGAACAATGATGACATGA+TGG | 0.620276 | 5.1:-1892839 | MS.gene21853:CDS |
| TTATACAGAAGAACAGACAA+AGG | 0.629341 | 5.1:-1894459 | MS.gene21853:CDS |
| CTCATCAAGAACTCTTTCAG+CGG | 0.633474 | 5.1:+1895593 | None:intergenic |
| TCTTCTGTATAACCCTGCAC+AGG | 0.636308 | 5.1:+1894470 | None:intergenic |
| AAGCCAGCTGGATCAAGACC+TGG | 0.644482 | 5.1:-1892871 | MS.gene21853:CDS |
| TCAAGACCTGGTGTCCAGGG+AGG | 0.644753 | 5.1:-1892859 | MS.gene21853:CDS |
| ACGACACTGCTGTACAAGTG+TGG | 0.646490 | 5.1:+1893128 | None:intergenic |
| GGAATATCATCCACATGAGG+TGG | 0.649969 | 5.1:+1894515 | None:intergenic |
| CAGCAGTTTCAACAATACGC+TGG | 0.650943 | 5.1:+1893088 | None:intergenic |
| GGTTGAAGTGGAGCAACTGG+AGG | 0.659537 | 5.1:+1892979 | None:intergenic |
| ACCTGCAAAACATCCTGTTG+CGG | 0.661120 | 5.1:+1894377 | None:intergenic |
| CGCGGAATATCATCCACATG+AGG | 0.664035 | 5.1:+1894512 | None:intergenic |
| GCGTATTGTTGAAACTGCTG+GGG | 0.671775 | 5.1:-1893085 | MS.gene21853:CDS |
| TCTGGCACAGTAGCTGATCG+AGG | 0.677519 | 5.1:+1894539 | None:intergenic |
| TTGGTTATGATTGAAGCTTG+GGG | 0.686489 | 5.1:-1895516 | MS.gene21853:CDS |
| GGCACAGTAGCTGATCGAGG+AGG | 0.687542 | 5.1:+1894542 | None:intergenic |
| ACACTGCTGTACAAGTGTGG+CGG | 0.710445 | 5.1:+1893131 | None:intergenic |
| TTAGCATCATCAAGATGACG+AGG | 0.718165 | 5.1:+1892913 | None:intergenic |
| ACATCCTGCTGAAATTGACG+CGG | 0.718477 | 5.1:+1894494 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAATATAGTTTTGAAAAT+TGG | - | chr5.1:1894969-1894988 | MS.gene21853:intron | 10.0% |
| !! | ATTATATGGGATATAATAAT+GGG | - | chr5.1:1895176-1895195 | MS.gene21853:intron | 15.0% |
| !! | TTATACATATTCTAATGTTT+GGG | - | chr5.1:1894884-1894903 | MS.gene21853:intron | 15.0% |
| !! | AATTTCATCATTAACATTCA+GGG | + | chr5.1:1895660-1895679 | None:intergenic | 20.0% |
| !! | ATTATCAGTCAATTTCAAAT+CGG | - | chr5.1:1895293-1895312 | MS.gene21853:intron | 20.0% |
| !! | GATTATATGGGATATAATAA+TGG | - | chr5.1:1895175-1895194 | MS.gene21853:intron | 20.0% |
| !! | GTTATACATATTCTAATGTT+TGG | - | chr5.1:1894883-1894902 | MS.gene21853:intron | 20.0% |
| !! | TAATAATAGGAATAAAGCTT+TGG | - | chr5.1:1893160-1893179 | MS.gene21853:intron | 20.0% |
| !! | TGTTAATGATGAAATTCTAA+AGG | - | chr5.1:1895664-1895683 | MS.gene21853:CDS | 20.0% |
| !!! | AGCTAATGTAGATTTTTTTT+TGG | - | chr5.1:1895068-1895087 | MS.gene21853:intron | 20.0% |
| !!! | AGTGAAATTGATATTTTCTA+TGG | - | chr5.1:1895015-1895034 | MS.gene21853:intron | 20.0% |
| !!! | ATCTTGATGAAATGATTTTT+GGG | - | chr5.1:1895882-1895901 | MS.gene21853:CDS | 20.0% |
| !!! | ATGTGCTATTTATACTTAAT+TGG | - | chr5.1:1895219-1895238 | MS.gene21853:intron | 20.0% |
| !!! | GTGAAATTGATATTTTCTAT+GGG | - | chr5.1:1895016-1895035 | MS.gene21853:intron | 20.0% |
| !!! | TGATGATTTTGAAACAATTT+TGG | - | chr5.1:1893696-1893715 | MS.gene21853:intron | 20.0% |
| !!! | TTTATATGGGTTGATTATAT+GGG | - | chr5.1:1895163-1895182 | MS.gene21853:intron | 20.0% |
| ! | AAGGTTAAAGAATTCTTCAA+CGG | - | chr5.1:1892843-1892862 | MS.gene21853:CDS | 25.0% |
| ! | AATTCACTTTCTTTAGATTC+TGG | - | chr5.1:1895094-1895113 | MS.gene21853:intron | 25.0% |
| ! | AGATTTATGTATTCCTCATT+TGG | + | chr5.1:1895445-1895464 | None:intergenic | 25.0% |
| ! | CTATTATTAACAACAGTTTG+AGG | + | chr5.1:1893149-1893168 | None:intergenic | 25.0% |
| ! | CTCAAACTGTTGTTAATAAT+AGG | - | chr5.1:1893147-1893166 | MS.gene21853:intron | 25.0% |
| ! | GAATTTCATCATTAACATTC+AGG | + | chr5.1:1895661-1895680 | None:intergenic | 25.0% |
| ! | GATTTATGTATTCCTCATTT+GGG | + | chr5.1:1895444-1895463 | None:intergenic | 25.0% |
| ! | TCCATAAAACAAGTAAAACA+GGG | - | chr5.1:1894683-1894702 | MS.gene21853:intron | 25.0% |
| ! | TGGAAATAAAGATCACATTT+AGG | + | chr5.1:1895527-1895546 | None:intergenic | 25.0% |
| ! | TTATAGGTTTCTTCAAAAAC+AGG | + | chr5.1:1893233-1893252 | None:intergenic | 25.0% |
| ! | TTCCATAAAACAAGTAAAAC+AGG | - | chr5.1:1894682-1894701 | MS.gene21853:intron | 25.0% |
| !! | AAACAATTTTCCATTTTGGA+AGG | + | chr5.1:1895390-1895409 | None:intergenic | 25.0% |
| !! | GATCTTGATGAAATGATTTT+TGG | - | chr5.1:1895881-1895900 | MS.gene21853:CDS | 25.0% |
| !! | TAATGAAGCAATTCTTTTTG+AGG | - | chr5.1:1895634-1895653 | MS.gene21853:CDS | 25.0% |
| !! | TACGAAACAATTTTCCATTT+TGG | + | chr5.1:1895394-1895413 | None:intergenic | 25.0% |
| !! | TATTCTAATGTTTGGGTTAT+TGG | - | chr5.1:1894891-1894910 | MS.gene21853:intron | 25.0% |
| !! | TTTGATGCACTCTTTTTATT+TGG | - | chr5.1:1894399-1894418 | MS.gene21853:CDS | 25.0% |
| !! | TTTTCACAACTAAACATAGT+AGG | + | chr5.1:1895268-1895287 | None:intergenic | 25.0% |
| !!! | AACAATTTTCCATTTTGGAA+GGG | + | chr5.1:1895389-1895408 | None:intergenic | 25.0% |
| !!! | GGTTTTTGTCTTTGTTTTTA+GGG | - | chr5.1:1894512-1894531 | MS.gene21853:CDS | 25.0% |
| !!! | GTTTATATGGGTTGATTATA+TGG | - | chr5.1:1895162-1895181 | MS.gene21853:intron | 25.0% |
| !!! | TGGTTTTTGTCTTTGTTTTT+AGG | - | chr5.1:1894511-1894530 | MS.gene21853:CDS | 25.0% |
| !!! | TGTTTTTGAAGAAACCTATA+AGG | - | chr5.1:1893232-1893251 | MS.gene21853:intron | 25.0% |
| !!! | TTTGTTTTTAGGGATTGTTT+AGG | - | chr5.1:1894522-1894541 | MS.gene21853:CDS | 25.0% |
| AAAAAAAGGAACCACCTTAT+AGG | + | chr5.1:1893249-1893268 | None:intergenic | 30.0% | |
| AAAACAAAGACAAAAACCAC+AGG | + | chr5.1:1894510-1894529 | None:intergenic | 30.0% | |
| AATGAGTTCAATGAGTTTCA+AGG | - | chr5.1:1892824-1892843 | MS.gene21853:CDS | 30.0% | |
| ATATAAATCTCTCGAGCAAA+GGG | - | chr5.1:1894749-1894768 | MS.gene21853:intron | 30.0% | |
| CTAAGATAGTAACTTGATCA+CGG | - | chr5.1:1895333-1895352 | MS.gene21853:intron | 30.0% | |
| GAATGTACAGAAATCATACA+AGG | + | chr5.1:1895359-1895378 | None:intergenic | 30.0% | |
| GATCATGATTAAAACTCCTA+GGG | - | chr5.1:1893010-1893029 | MS.gene21853:CDS | 30.0% | |
| TATATAAATCTCTCGAGCAA+AGG | - | chr5.1:1894748-1894767 | MS.gene21853:intron | 30.0% | |
| TGGACTATTTACATGGTTAT+TGG | - | chr5.1:1894911-1894930 | MS.gene21853:intron | 30.0% | |
| TTATACAGAAGAACAGACAA+AGG | - | chr5.1:1894236-1894255 | MS.gene21853:intron | 30.0% | |
| TTCGGTGAAAAGCTAAAAAT+CGG | - | chr5.1:1892768-1892787 | MS.gene21853:CDS | 30.0% | |
| TTGAATGTAATCACATGTGT+CGG | - | chr5.1:1893443-1893462 | MS.gene21853:intron | 30.0% | |
| TTTGGTTATGATTGAAGCTT+GGG | - | chr5.1:1893178-1893197 | MS.gene21853:intron | 30.0% | |
| ! | ATGGTTGGGTATTGTTTATA+TGG | - | chr5.1:1895149-1895168 | MS.gene21853:intron | 30.0% |
| ! | GGTATATAACTTTAGAGGAA+GGG | - | chr5.1:1894577-1894596 | MS.gene21853:CDS | 30.0% |
| ! | TAAAAAGAGTGCATCAAACA+CGG | + | chr5.1:1894397-1894416 | None:intergenic | 30.0% |
| ! | TGATCTTTATTTCCATCTAC+AGG | - | chr5.1:1895532-1895551 | MS.gene21853:CDS | 30.0% |
| ! | TGGTTGGGTATTGTTTATAT+GGG | - | chr5.1:1895150-1895169 | MS.gene21853:intron | 30.0% |
| !! | ATGATTTTTGGGAGTAAAGT+TGG | - | chr5.1:1895893-1895912 | MS.gene21853:CDS | 30.0% |
| !! | TGATTTTTGGGAGTAAAGTT+GGG | - | chr5.1:1895894-1895913 | MS.gene21853:CDS | 30.0% |
| !! | TTTTGAAGAAACCTATAAGG+TGG | - | chr5.1:1893235-1893254 | MS.gene21853:intron | 30.0% |
| !!! | ACCCTGTTTTACTTGTTTTA+TGG | + | chr5.1:1894687-1894706 | None:intergenic | 30.0% |
| AAAGGTTCTTACCAAGTATG+AGG | - | chr5.1:1895682-1895701 | MS.gene21853:CDS | 35.0% | |
| AATATGCTCATTCCCTAACA+TGG | + | chr5.1:1895483-1895502 | None:intergenic | 35.0% | |
| AGTAGGATAAGTTCTTCTGT+GGG | + | chr5.1:1895251-1895270 | None:intergenic | 35.0% | |
| AGTTCTTGATGAGATGGTTA+GGG | - | chr5.1:1893112-1893131 | MS.gene21853:CDS | 35.0% | |
| ATGGAAAAAGTGAACGCATT+CGG | - | chr5.1:1892750-1892769 | MS.gene21853:CDS | 35.0% | |
| ATGGAATTCCCTAAAATCAG+AGG | + | chr5.1:1894668-1894687 | None:intergenic | 35.0% | |
| ATTGTTTAGGAGTTGGGATA+TGG | - | chr5.1:1894535-1894554 | MS.gene21853:CDS | 35.0% | |
| CTCGAGAGATTTATATAGTG+GGG | + | chr5.1:1894745-1894764 | None:intergenic | 35.0% | |
| CTTGTTAGCAGTTGTTTATG+AGG | - | chr5.1:1894044-1894063 | MS.gene21853:intron | 35.0% | |
| CTTTGGTTATGATTGAAGCT+TGG | - | chr5.1:1893177-1893196 | MS.gene21853:intron | 35.0% | |
| GCTCGAGAGATTTATATAGT+GGG | + | chr5.1:1894746-1894765 | None:intergenic | 35.0% | |
| GGATCATGATTAAAACTCCT+AGG | - | chr5.1:1893009-1893028 | MS.gene21853:CDS | 35.0% | |
| GGGTTATTGGACTATTTACA+TGG | - | chr5.1:1894904-1894923 | MS.gene21853:intron | 35.0% | |
| GTAGGTAGAAAAGTAACAGA+AGG | - | chr5.1:1892801-1892820 | MS.gene21853:CDS | 35.0% | |
| TAACAACCTCTATACACTTC+TGG | + | chr5.1:1893511-1893530 | None:intergenic | 35.0% | |
| TAGTAGGATAAGTTCTTCTG+TGG | + | chr5.1:1895252-1895271 | None:intergenic | 35.0% | |
| TCGGTGAAAAGCTAAAAATC+GGG | - | chr5.1:1892769-1892788 | MS.gene21853:CDS | 35.0% | |
| TCTCTCAACTATCTCAAAAG+AGG | + | chr5.1:1894996-1895015 | None:intergenic | 35.0% | |
| TGAAAGAGTTCTTGATGAGA+TGG | - | chr5.1:1893106-1893125 | MS.gene21853:CDS | 35.0% | |
| TGAAGTAGAATGTTGTGTTG+CGG | - | chr5.1:1894429-1894448 | MS.gene21853:CDS | 35.0% | |
| TGATCCGTTTCTTAATAGCA+CGG | + | chr5.1:1892995-1893014 | None:intergenic | 35.0% | |
| TGCTCGAGAGATTTATATAG+TGG | + | chr5.1:1894747-1894766 | None:intergenic | 35.0% | |
| TGGAATTCCCTAAAATCAGA+GGG | + | chr5.1:1894667-1894686 | None:intergenic | 35.0% | |
| TTAGGGATTGTTTAGGAGTT+GGG | - | chr5.1:1894529-1894548 | MS.gene21853:CDS | 35.0% | |
| TTGGTTATGATTGAAGCTTG+GGG | - | chr5.1:1893179-1893198 | MS.gene21853:intron | 35.0% | |
| TTGTTTAGGAGTTGGGATAT+GGG | - | chr5.1:1894536-1894555 | MS.gene21853:CDS | 35.0% | |
| TTTAGGGATTGTTTAGGAGT+TGG | - | chr5.1:1894528-1894547 | MS.gene21853:CDS | 35.0% | |
| ! | ACTATTTCTCGCAACATCAA+AGG | + | chr5.1:1894265-1894284 | None:intergenic | 35.0% |
| ! | ATAACTTTAGAGGAAGGGAA+GGG | - | chr5.1:1894582-1894601 | MS.gene21853:CDS | 35.0% |
| ! | GGAAGGGTATATAACTTTAG+AGG | - | chr5.1:1894572-1894591 | MS.gene21853:CDS | 35.0% |
| ! | GGGTATATAACTTTAGAGGA+AGG | - | chr5.1:1894576-1894595 | MS.gene21853:CDS | 35.0% |
| ! | TATAACTTTAGAGGAAGGGA+AGG | - | chr5.1:1894581-1894600 | MS.gene21853:CDS | 35.0% |
| ! | TCAAAACCCCTCTGATTTTA+GGG | - | chr5.1:1894657-1894676 | MS.gene21853:intron | 35.0% |
| ! | TGATCCGTGCTATTAAGAAA+CGG | - | chr5.1:1892988-1893007 | MS.gene21853:CDS | 35.0% |
| ! | TGTCCTTCTATTAGAAGTGT+CGG | - | chr5.1:1893617-1893636 | MS.gene21853:intron | 35.0% |
| ! | TTTGCAGAGTTTGAGATCAA+GGG | - | chr5.1:1894080-1894099 | MS.gene21853:intron | 35.0% |
| !! | AATTTTCCATTTTGGAAGGG+TGG | + | chr5.1:1895386-1895405 | None:intergenic | 35.0% |
| !! | ATTTTTGGGAGTAAAGTTGG+GGG | - | chr5.1:1895896-1895915 | MS.gene21853:CDS | 35.0% |
| !! | GATTTTTGGGAGTAAAGTTG+GGG | - | chr5.1:1895895-1895914 | MS.gene21853:CDS | 35.0% |
| !! | TCATCTTGATGATGCTAAAG+AGG | - | chr5.1:1895787-1895806 | MS.gene21853:CDS | 35.0% |
| AAAAAGGGGAAGGGAAAAAG+AGG | - | chr5.1:1894605-1894624 | MS.gene21853:CDS | 40.0% | |
| AAAGCCAAATACTGAACCCT+AGG | + | chr5.1:1893029-1893048 | None:intergenic | 40.0% | |
| AACTCCTAGGGTTCAGTATT+TGG | - | chr5.1:1893022-1893041 | MS.gene21853:CDS | 40.0% | |
| AAGCACATGAAGAACCTGAT+TGG | - | chr5.1:1892907-1892926 | MS.gene21853:CDS | 40.0% | |
| AAGCTTTCATTATCACGACC+AGG | + | chr5.1:1894117-1894136 | None:intergenic | 40.0% | |
| AGCACATGAAGAACCTGATT+GGG | - | chr5.1:1892908-1892927 | MS.gene21853:CDS | 40.0% | |
| AGCGTATTGTTGAAACTGCT+GGG | - | chr5.1:1895609-1895628 | MS.gene21853:CDS | 40.0% | |
| AGGGAACAATGATGACATGA+TGG | - | chr5.1:1895856-1895875 | MS.gene21853:CDS | 40.0% | |
| ATCAGGTTCTTCATGTGCTT+CGG | + | chr5.1:1892907-1892926 | None:intergenic | 40.0% | |
| CATATACCAAAGGCTATGTC+GGG | + | chr5.1:1894816-1894835 | None:intergenic | 40.0% | |
| CCAGTCAATGTTCCATGTTA+GGG | - | chr5.1:1895468-1895487 | MS.gene21853:CDS | 40.0% | |
| CGGTGAAAAGCTAAAAATCG+GGG | - | chr5.1:1892770-1892789 | MS.gene21853:CDS | 40.0% | |
| CTCATCAAGAACTCTTTCAG+CGG | + | chr5.1:1893105-1893124 | None:intergenic | 40.0% | |
| GACCACAATAAGACATGGTT+GGG | - | chr5.1:1895135-1895154 | MS.gene21853:intron | 40.0% | |
| GAGTTCTTGATGAGATGGTT+AGG | - | chr5.1:1893111-1893130 | MS.gene21853:CDS | 40.0% | |
| GATATGGGAGGGAAATAGAA+TGG | - | chr5.1:1894551-1894570 | MS.gene21853:CDS | 40.0% | |
| GCATATACCAAAGGCTATGT+CGG | + | chr5.1:1894817-1894836 | None:intergenic | 40.0% | |
| GGAATTCCCTAAAATCAGAG+GGG | + | chr5.1:1894666-1894685 | None:intergenic | 40.0% | |
| GGTGAAAAGCTAAAAATCGG+GGG | - | chr5.1:1892771-1892790 | MS.gene21853:CDS | 40.0% | |
| TAGCCTTTGGTATATGCACT+TGG | - | chr5.1:1894820-1894839 | MS.gene21853:intron | 40.0% | |
| TGACCACAATAAGACATGGT+TGG | - | chr5.1:1895134-1895153 | MS.gene21853:intron | 40.0% | |
| TGGTTTCAACTCCTCATACT+TGG | + | chr5.1:1895696-1895715 | None:intergenic | 40.0% | |
| TTAGCATCATCAAGATGACG+AGG | + | chr5.1:1895785-1895804 | None:intergenic | 40.0% | |
| ! | ACCATGTCTTATTGTGGTCA+AGG | + | chr5.1:1895134-1895153 | None:intergenic | 40.0% |
| ! | ATATAGTGGGGAGTAGTGTT+TGG | + | chr5.1:1894733-1894752 | None:intergenic | 40.0% |
| ! | CATGTCTTATTGTGGTCAAG+GGG | + | chr5.1:1895132-1895151 | None:intergenic | 40.0% |
| ! | CCATGTCTTATTGTGGTCAA+GGG | + | chr5.1:1895133-1895152 | None:intergenic | 40.0% |
| ! | GTCAAAACCCCTCTGATTTT+AGG | - | chr5.1:1894656-1894675 | MS.gene21853:intron | 40.0% |
| ! | GTTTGCAGAGTTTGAGATCA+AGG | - | chr5.1:1894079-1894098 | MS.gene21853:intron | 40.0% |
| ! | TACCCAACCATGTCTTATTG+TGG | + | chr5.1:1895140-1895159 | None:intergenic | 40.0% |
| ! | TAGGGTTCAGTATTTGGCTT+TGG | - | chr5.1:1893028-1893047 | MS.gene21853:CDS | 40.0% |
| ! | TATAGTGGGGAGTAGTGTTT+GGG | + | chr5.1:1894732-1894751 | None:intergenic | 40.0% |
| ! | TGGTCGTGATAATGAAAGCT+TGG | - | chr5.1:1894116-1894135 | MS.gene21853:intron | 40.0% |
| ! | TTGCAGAGTTTGAGATCAAG+GGG | - | chr5.1:1894081-1894100 | MS.gene21853:intron | 40.0% |
| ! | TTGCGAGAGGCATATAGTTA+TGG | + | chr5.1:1894784-1894803 | None:intergenic | 40.0% |
| !! | ACGAGCTTATCGACTTGATT+TGG | + | chr5.1:1892870-1892889 | None:intergenic | 40.0% |
| !! | GTTTGAGATCAAGGGGTATT+AGG | - | chr5.1:1894088-1894107 | MS.gene21853:intron | 40.0% |
| !! | TAACTATGAAGCACTGACAC+AGG | - | chr5.1:1893771-1893790 | MS.gene21853:intron | 40.0% |
| !! | TATTAGAAGTGTCGGTGCTA+TGG | - | chr5.1:1893625-1893644 | MS.gene21853:intron | 40.0% |
| ACAGCAACAGGTATCATAGC+TGG | + | chr5.1:1895746-1895765 | None:intergenic | 45.0% | |
| ACATCCTGCTGAAATTGACG+CGG | + | chr5.1:1894204-1894223 | None:intergenic | 45.0% | |
| ACCTGCAAAACATCCTGTTG+CGG | + | chr5.1:1894321-1894340 | None:intergenic | 45.0% | |
| AGAGGAAGGGAAGGGAAAAA+GGG | - | chr5.1:1894590-1894609 | MS.gene21853:CDS | 45.0% | |
| CACTGACACATGTTGGACAT+CGG | - | chr5.1:1893473-1893492 | MS.gene21853:intron | 45.0% | |
| CAGCAGTTTCAACAATACGC+TGG | + | chr5.1:1895610-1895629 | None:intergenic | 45.0% | |
| CAGCGTATTGTTGAAACTGC+TGG | - | chr5.1:1895608-1895627 | MS.gene21853:CDS | 45.0% | |
| CCCTAACATGGAACATTGAC+TGG | + | chr5.1:1895471-1895490 | None:intergenic | 45.0% | |
| CCCTTGACCACAATAAGACA+TGG | - | chr5.1:1895130-1895149 | MS.gene21853:intron | 45.0% | |
| CCTCATTTGGGAAGCTTACA+AGG | + | chr5.1:1895432-1895451 | None:intergenic | 45.0% | |
| CCTTGTAAGCTTCCCAAATG+AGG | - | chr5.1:1895429-1895448 | MS.gene21853:intron | 45.0% | |
| CGGTCAAATCATCCTGTAGA+TGG | + | chr5.1:1895547-1895566 | None:intergenic | 45.0% | |
| CTCTATACACTTCTGGTCGA+AGG | + | chr5.1:1893504-1893523 | None:intergenic | 45.0% | |
| CTGCCAAGTGCATATACCAA+AGG | + | chr5.1:1894826-1894845 | None:intergenic | 45.0% | |
| GATCGAGGAGGAGTGAAAAT+TGG | + | chr5.1:1894144-1894163 | None:intergenic | 45.0% | |
| GCCAGTCAATGTTCCATGTT+AGG | - | chr5.1:1895467-1895486 | MS.gene21853:CDS | 45.0% | |
| GCGTATTGTTGAAACTGCTG+GGG | - | chr5.1:1895610-1895629 | MS.gene21853:CDS | 45.0% | |
| GGAATATCATCCACATGAGG+TGG | + | chr5.1:1894183-1894202 | None:intergenic | 45.0% | |
| GGGAATGAGCATATTGTACC+AGG | - | chr5.1:1895488-1895507 | MS.gene21853:CDS | 45.0% | |
| GGGAGGGAAATAGAATGGAA+GGG | - | chr5.1:1894556-1894575 | MS.gene21853:CDS | 45.0% | |
| GTTATCATCTTCACCGCAAC+AGG | - | chr5.1:1894305-1894324 | MS.gene21853:intron | 45.0% | |
| GTTGTGTTGCGGATAGATCA+TGG | - | chr5.1:1894440-1894459 | MS.gene21853:CDS | 45.0% | |
| TAGAGGAAGGGAAGGGAAAA+AGG | - | chr5.1:1894589-1894608 | MS.gene21853:CDS | 45.0% | |
| TATTCCGCGTCAATTTCAGC+AGG | - | chr5.1:1894197-1894216 | MS.gene21853:intron | 45.0% | |
| TCATCTCCACCCTTCCAAAA+TGG | - | chr5.1:1895377-1895396 | MS.gene21853:intron | 45.0% | |
| TCCTTGATTAGAAAGCCAGC+TGG | - | chr5.1:1895812-1895831 | MS.gene21853:CDS | 45.0% | |
| TCGAGATTCATAGCCCAATC+AGG | + | chr5.1:1892924-1892943 | None:intergenic | 45.0% | |
| TCTTCTGTATAACCCTGCAC+AGG | + | chr5.1:1894228-1894247 | None:intergenic | 45.0% | |
| TGACACTGACACGTCTAAAC+AGG | - | chr5.1:1893810-1893829 | MS.gene21853:intron | 45.0% | |
| TGGGAGGGAAATAGAATGGA+AGG | - | chr5.1:1894555-1894574 | MS.gene21853:CDS | 45.0% | |
| TGTTGCGGATAGATCATGGT+AGG | - | chr5.1:1894444-1894463 | MS.gene21853:CDS | 45.0% | |
| TGTTGGACACTGACACATGT+TGG | - | chr5.1:1893466-1893485 | MS.gene21853:intron | 45.0% | |
| TTAGGAGTTGGGATATGGGA+GGG | - | chr5.1:1894540-1894559 | MS.gene21853:CDS | 45.0% | |
| TTAGGTAACTCACAGATGCC+TGG | + | chr5.1:1895509-1895528 | None:intergenic | 45.0% | |
| TTGGTATATGCACTTGGCAG+AGG | - | chr5.1:1894826-1894845 | MS.gene21853:intron | 45.0% | |
| TTTAGGAGTTGGGATATGGG+AGG | - | chr5.1:1894539-1894558 | MS.gene21853:CDS | 45.0% | |
| ! | AAAATCGGGGGTGTAGAAGT+AGG | - | chr5.1:1892783-1892802 | MS.gene21853:CDS | 45.0% |
| ! | ACAGGTATCATAGCTGGTTC+AGG | + | chr5.1:1895740-1895759 | None:intergenic | 45.0% |
| ! | ATTGACCGCGACAACTGTTT+TGG | - | chr5.1:1894484-1894503 | MS.gene21853:CDS | 45.0% |
| ! | CTTCGACCAGAAGTGTATAG+AGG | - | chr5.1:1893502-1893521 | MS.gene21853:intron | 45.0% |
| ! | GCACCGACACTTCTAATAGA+AGG | + | chr5.1:1893623-1893642 | None:intergenic | 45.0% |
| ! | GTAATCACATGTGTCGGTGT+TGG | - | chr5.1:1893449-1893468 | MS.gene21853:intron | 45.0% |
| !! | ATAGCTGGTTCAGGTTGAAG+TGG | + | chr5.1:1895731-1895750 | None:intergenic | 45.0% |
| !! | TCAAGGGGTATTAGGTTTCC+TGG | - | chr5.1:1894096-1894115 | MS.gene21853:intron | 45.0% |
| !! | TCCAGCTGGCTTTCTAATCA+AGG | + | chr5.1:1895816-1895835 | None:intergenic | 45.0% |
| !!! | GGGGTTTTGACTTGCAAACA+AGG | + | chr5.1:1894647-1894666 | None:intergenic | 45.0% |
| !! | CAAAAAAAAAAAAAAAAAAA+AGG | + | chr5.1:1893263-1893282 | None:intergenic | 5.0% |
| AAGGGAAGGGAAAAAGGGGA+AGG | - | chr5.1:1894595-1894614 | MS.gene21853:CDS | 50.0% | |
| ACACTGCTGTACAAGTGTGG+CGG | + | chr5.1:1895567-1895586 | None:intergenic | 50.0% | |
| ACAGGCCAAAACAGTTGTCG+CGG | + | chr5.1:1894492-1894511 | None:intergenic | 50.0% | |
| ACGACACTGCTGTACAAGTG+TGG | + | chr5.1:1895570-1895589 | None:intergenic | 50.0% | |
| AGACGTGTCAGTGTCATGTC+TGG | + | chr5.1:1893806-1893825 | None:intergenic | 50.0% | |
| AGATGACGAGGTGACTCATC+TGG | + | chr5.1:1895773-1895792 | None:intergenic | 50.0% | |
| AGGGAAGGGAAAAAGGGGAA+GGG | - | chr5.1:1894596-1894615 | MS.gene21853:CDS | 50.0% | |
| AGGGGAAGGGAAAAAGAGGA+AGG | - | chr5.1:1894609-1894628 | MS.gene21853:CDS | 50.0% | |
| CGCGGAATATCATCCACATG+AGG | + | chr5.1:1894186-1894205 | None:intergenic | 50.0% | |
| GAGGAAGGGAAGGGAAAAAG+GGG | - | chr5.1:1894591-1894610 | MS.gene21853:CDS | 50.0% | |
| GGGGAAGGGAAAAAGAGGAA+GGG | - | chr5.1:1894610-1894629 | MS.gene21853:CDS | 50.0% | |
| GTTAGTGTCGTGTCAGACAC+TGG | - | chr5.1:1893875-1893894 | MS.gene21853:intron | 50.0% | |
| TGTCATCATTGTTCCCTCCC+TGG | + | chr5.1:1895853-1895872 | None:intergenic | 50.0% | |
| ! | ACCGCAACAGGATGTTTTGC+AGG | - | chr5.1:1894317-1894336 | MS.gene21853:intron | 50.0% |
| !! | TAGAAGTGTCGGTGCTATGG+AGG | - | chr5.1:1893628-1893647 | MS.gene21853:intron | 50.0% |
| !! | TCAGGTTGAAGTGGAGCAAC+TGG | + | chr5.1:1895722-1895741 | None:intergenic | 50.0% |
| AAAGGCTATGTCGGGCGAAG+GGG | + | chr5.1:1894808-1894827 | None:intergenic | 55.0% | |
| AAGCCAGCTGGATCAAGACC+TGG | - | chr5.1:1895824-1895843 | MS.gene21853:CDS | 55.0% | |
| ACACCAGGTCTTGATCCAGC+TGG | + | chr5.1:1895830-1895849 | None:intergenic | 55.0% | |
| CAAAGGCTATGTCGGGCGAA+GGG | + | chr5.1:1894809-1894828 | None:intergenic | 55.0% | |
| CAGCAGGATGTTCCTGTGCA+GGG | - | chr5.1:1894213-1894232 | MS.gene21853:intron | 55.0% | |
| GAAGCTTGGGGAGAGTCTAC+TGG | - | chr5.1:1893191-1893210 | MS.gene21853:intron | 55.0% | |
| GGATCAAGACCTGGTGTCCA+GGG | - | chr5.1:1895833-1895852 | MS.gene21853:CDS | 55.0% | |
| GGTTGAAGTGGAGCAACTGG+AGG | + | chr5.1:1895719-1895738 | None:intergenic | 55.0% | |
| TCAGCAGGATGTTCCTGTGC+AGG | - | chr5.1:1894212-1894231 | MS.gene21853:intron | 55.0% | |
| TCAGTGTCATGTCTGGTGCC+TGG | + | chr5.1:1893799-1893818 | None:intergenic | 55.0% | |
| TCATCCACATGAGGTGGCTC+TGG | + | chr5.1:1894177-1894196 | None:intergenic | 55.0% | |
| TCTGGCACAGTAGCTGATCG+AGG | + | chr5.1:1894159-1894178 | None:intergenic | 55.0% | |
| TGAAGTGGAGCAACTGGAGG+TGG | + | chr5.1:1895716-1895735 | None:intergenic | 55.0% | |
| TGGATCAAGACCTGGTGTCC+AGG | - | chr5.1:1895832-1895851 | MS.gene21853:CDS | 55.0% | |
| ! | AAAGTTGGGGGCGCATCAGA+TGG | - | chr5.1:1895908-1895927 | MS.gene21853:CDS | 55.0% |
| ! | TCATCTGGCTCGACAGCAAC+AGG | + | chr5.1:1895758-1895777 | None:intergenic | 55.0% |
| !!! | GCGACAACTGTTTTGGCCTG+TGG | - | chr5.1:1894491-1894510 | MS.gene21853:CDS | 55.0% |
| AAGGCTATGTCGGGCGAAGG+GGG | + | chr5.1:1894807-1894826 | None:intergenic | 60.0% | |
| CAAGACCTGGTGTCCAGGGA+GGG | - | chr5.1:1895837-1895856 | MS.gene21853:CDS | 60.0% | |
| CCAAAGGCTATGTCGGGCGA+AGG | + | chr5.1:1894810-1894829 | None:intergenic | 60.0% | |
| CCTTCGCCCGACATAGCCTT+TGG | - | chr5.1:1894807-1894826 | MS.gene21853:intron | 60.0% | |
| GGCACAGTAGCTGATCGAGG+AGG | + | chr5.1:1894156-1894175 | None:intergenic | 60.0% | |
| TCAAGACCTGGTGTCCAGGG+AGG | - | chr5.1:1895836-1895855 | MS.gene21853:CDS | 60.0% | |
| TGTGCCAGAGCCACCTCATG+TGG | - | chr5.1:1894170-1894189 | MS.gene21853:intron | 60.0% | |
| TTGTTCCCTCCCTGGACACC+AGG | + | chr5.1:1895845-1895864 | None:intergenic | 60.0% | |
| !! | GAAGCACTGACACAGGCACC+AGG | - | chr5.1:1893778-1893797 | MS.gene21853:intron | 60.0% |
| ! | GTTGGGGGCGCATCAGATGG+AGG | - | chr5.1:1895911-1895930 | MS.gene21853:CDS | 65.0% |
| CGGGCGAAGGGGGTTGCGAG+AGG | + | chr5.1:1894797-1894816 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 1892735 | 1895982 | 1892735 | ID=MS.gene21853 |
| chr5.1 | mRNA | 1892735 | 1895982 | 1892735 | ID=MS.gene21853.t1;Parent=MS.gene21853 |
| chr5.1 | exon | 1895464 | 1895982 | 1895464 | ID=MS.gene21853.t1.exon1;Parent=MS.gene21853.t1 |
| chr5.1 | CDS | 1895464 | 1895982 | 1895464 | ID=cds.MS.gene21853.t1;Parent=MS.gene21853.t1 |
| chr5.1 | exon | 1894379 | 1894630 | 1894379 | ID=MS.gene21853.t1.exon2;Parent=MS.gene21853.t1 |
| chr5.1 | CDS | 1894379 | 1894630 | 1894379 | ID=cds.MS.gene21853.t1;Parent=MS.gene21853.t1 |
| chr5.1 | exon | 1892735 | 1893163 | 1892735 | ID=MS.gene21853.t1.exon3;Parent=MS.gene21853.t1 |
| chr5.1 | CDS | 1892735 | 1893163 | 1892735 | ID=cds.MS.gene21853.t1;Parent=MS.gene21853.t1 |
| Gene Sequence |
| Protein sequence |
