Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22695.t1 | XP_003626569.1 | 92.9 | 311 | 22 | 0 | 1 | 311 | 156 | 466 | 3.10E-145 | 524.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22695.t1 | Q07G43 | 55.4 | 65 | 29 | 0 | 246 | 310 | 397 | 461 | 6.5e-11 | 69.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22695.t1 | G7L437 | 92.9 | 311 | 22 | 0 | 1 | 311 | 156 | 466 | 2.2e-145 | 524.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene22695 | 0.824195 | 9.21E-54 | -1.69E-46 |
| MS.gene049283 | MS.gene22695 | 0.81561 | 8.46E-52 | -1.69E-46 |
| MS.gene049368 | MS.gene22695 | 0.833669 | 4.67E-56 | -1.69E-46 |
| MS.gene049411 | MS.gene22695 | 0.81376 | 2.17E-51 | -1.69E-46 |
| MS.gene049419 | MS.gene22695 | -0.80059 | 1.34E-48 | -1.69E-46 |
| MS.gene049983 | MS.gene22695 | 0.856734 | 2.63E-62 | -1.69E-46 |
| MS.gene050085 | MS.gene22695 | 0.812903 | 3.35E-51 | -1.69E-46 |
| MS.gene050359 | MS.gene22695 | 0.832439 | 9.45E-56 | -1.69E-46 |
| MS.gene050361 | MS.gene22695 | 0.824414 | 8.18E-54 | -1.69E-46 |
| MS.gene050384 | MS.gene22695 | 0.847408 | 1.18E-59 | -1.69E-46 |
| MS.gene050386 | MS.gene22695 | 0.846161 | 2.58E-59 | -1.69E-46 |
| MS.gene050414 | MS.gene22695 | 0.828123 | 1.07E-54 | -1.69E-46 |
| MS.gene050551 | MS.gene22695 | 0.808671 | 2.76E-50 | -1.69E-46 |
| MS.gene050646 | MS.gene22695 | 0.955118 | 6.32E-113 | -1.69E-46 |
| MS.gene050654 | MS.gene22695 | 0.849063 | 4.11E-60 | -1.69E-46 |
| MS.gene050689 | MS.gene22695 | 0.833728 | 4.51E-56 | -1.69E-46 |
| MS.gene050752 | MS.gene22695 | 0.813097 | 3.04E-51 | -1.69E-46 |
| MS.gene050838 | MS.gene22695 | 0.80784 | 4.15E-50 | -1.69E-46 |
| MS.gene050931 | MS.gene22695 | 0.812059 | 5.13E-51 | -1.69E-46 |
| MS.gene050941 | MS.gene22695 | 0.818197 | 2.22E-52 | -1.69E-46 |
| MS.gene051003 | MS.gene22695 | 0.837793 | 4.21E-57 | -1.69E-46 |
| MS.gene051043 | MS.gene22695 | 0.820806 | 5.65E-53 | -1.69E-46 |
| MS.gene051234 | MS.gene22695 | 0.839127 | 1.91E-57 | -1.69E-46 |
| MS.gene051343 | MS.gene22695 | 0.828407 | 9.15E-55 | -1.69E-46 |
| MS.gene051363 | MS.gene22695 | 0.808071 | 3.71E-50 | -1.69E-46 |
| MS.gene051365 | MS.gene22695 | 0.82737 | 1.62E-54 | -1.69E-46 |
| MS.gene051381 | MS.gene22695 | 0.812335 | 4.47E-51 | -1.69E-46 |
| MS.gene051856 | MS.gene22695 | 0.836819 | 7.48E-57 | -1.69E-46 |
| MS.gene051902 | MS.gene22695 | 0.847431 | 1.16E-59 | -1.69E-46 |
| MS.gene052072 | MS.gene22695 | 0.851963 | 6.30E-61 | -1.69E-46 |
| MS.gene052242 | MS.gene22695 | -0.805813 | 1.11E-49 | -1.69E-46 |
| MS.gene052307 | MS.gene22695 | 0.849212 | 3.74E-60 | -1.69E-46 |
| MS.gene052342 | MS.gene22695 | 0.827242 | 1.74E-54 | -1.69E-46 |
| MS.gene052434 | MS.gene22695 | 0.813379 | 2.64E-51 | -1.69E-46 |
| MS.gene052463 | MS.gene22695 | 0.826981 | 2.01E-54 | -1.69E-46 |
| MS.gene052516 | MS.gene22695 | 0.819887 | 9.17E-53 | -1.69E-46 |
| MS.gene052518 | MS.gene22695 | 0.800973 | 1.12E-48 | -1.69E-46 |
| MS.gene052609 | MS.gene22695 | 0.833289 | 5.81E-56 | -1.69E-46 |
| MS.gene052932 | MS.gene22695 | 0.818616 | 1.79E-52 | -1.69E-46 |
| MS.gene053058 | MS.gene22695 | 0.815302 | 9.91E-52 | -1.69E-46 |
| MS.gene053456 | MS.gene22695 | 0.818318 | 2.09E-52 | -1.69E-46 |
| MS.gene05350 | MS.gene22695 | 0.833443 | 5.32E-56 | -1.69E-46 |
| MS.gene053879 | MS.gene22695 | 0.809289 | 2.04E-50 | -1.69E-46 |
| MS.gene053931 | MS.gene22695 | 0.807601 | 4.67E-50 | -1.69E-46 |
| MS.gene054004 | MS.gene22695 | 0.813743 | 2.19E-51 | -1.69E-46 |
| MS.gene054403 | MS.gene22695 | 0.810821 | 9.53E-51 | -1.69E-46 |
| MS.gene05458 | MS.gene22695 | 0.828957 | 6.74E-55 | -1.69E-46 |
| MS.gene054709 | MS.gene22695 | 0.831661 | 1.47E-55 | -1.69E-46 |
| MS.gene055311 | MS.gene22695 | 0.803963 | 2.71E-49 | -1.69E-46 |
| MS.gene055513 | MS.gene22695 | 0.809229 | 2.10E-50 | -1.69E-46 |
| MS.gene055979 | MS.gene22695 | 0.806371 | 8.50E-50 | -1.69E-46 |
| MS.gene056045 | MS.gene22695 | 0.815286 | 1.00E-51 | -1.69E-46 |
| MS.gene056097 | MS.gene22695 | 0.808801 | 2.59E-50 | -1.69E-46 |
| MS.gene056181 | MS.gene22695 | 0.836673 | 8.15E-57 | -1.69E-46 |
| MS.gene056578 | MS.gene22695 | 0.825335 | 4.96E-54 | -1.69E-46 |
| MS.gene056699 | MS.gene22695 | 0.822949 | 1.80E-53 | -1.69E-46 |
| MS.gene05686 | MS.gene22695 | 0.800634 | 1.31E-48 | -1.69E-46 |
| MS.gene057102 | MS.gene22695 | 0.82822 | 1.01E-54 | -1.69E-46 |
| MS.gene057208 | MS.gene22695 | 0.822287 | 2.57E-53 | -1.69E-46 |
| MS.gene057371 | MS.gene22695 | 0.800691 | 1.28E-48 | -1.69E-46 |
| MS.gene05781 | MS.gene22695 | 0.806124 | 9.58E-50 | -1.69E-46 |
| MS.gene058008 | MS.gene22695 | 0.807002 | 6.25E-50 | -1.69E-46 |
| MS.gene058054 | MS.gene22695 | 0.818233 | 2.18E-52 | -1.69E-46 |
| MS.gene058081 | MS.gene22695 | 0.816478 | 5.42E-52 | -1.69E-46 |
| MS.gene058149 | MS.gene22695 | 0.804002 | 2.66E-49 | -1.69E-46 |
| MS.gene058292 | MS.gene22695 | 0.814338 | 1.62E-51 | -1.69E-46 |
| MS.gene058781 | MS.gene22695 | 0.83621 | 1.07E-56 | -1.69E-46 |
| MS.gene058783 | MS.gene22695 | 0.825948 | 3.55E-54 | -1.69E-46 |
| MS.gene059007 | MS.gene22695 | 0.809056 | 2.28E-50 | -1.69E-46 |
| MS.gene059146 | MS.gene22695 | 0.829077 | 6.30E-55 | -1.69E-46 |
| MS.gene059170 | MS.gene22695 | 0.813859 | 2.07E-51 | -1.69E-46 |
| MS.gene059290 | MS.gene22695 | 0.814398 | 1.57E-51 | -1.69E-46 |
| MS.gene05978 | MS.gene22695 | 0.808316 | 3.29E-50 | -1.69E-46 |
| MS.gene059965 | MS.gene22695 | 0.800468 | 1.42E-48 | -1.69E-46 |
| MS.gene060085 | MS.gene22695 | 0.804144 | 2.49E-49 | -1.69E-46 |
| MS.gene060244 | MS.gene22695 | 0.823844 | 1.11E-53 | -1.69E-46 |
| MS.gene060259 | MS.gene22695 | 0.832487 | 9.19E-56 | -1.69E-46 |
| MS.gene060527 | MS.gene22695 | 0.800698 | 1.28E-48 | -1.69E-46 |
| MS.gene060932 | MS.gene22695 | 0.803241 | 3.83E-49 | -1.69E-46 |
| MS.gene060933 | MS.gene22695 | 0.824696 | 7.02E-54 | -1.69E-46 |
| MS.gene060935 | MS.gene22695 | 0.864464 | 1.19E-64 | -1.69E-46 |
| MS.gene060937 | MS.gene22695 | 0.873183 | 1.79E-67 | -1.69E-46 |
| MS.gene061100 | MS.gene22695 | 0.831036 | 2.10E-55 | -1.69E-46 |
| MS.gene061135 | MS.gene22695 | 0.80621 | 9.19E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22695.t1 | MTR_7g117320 | 92.414 | 290 | 22 | 0 | 9 | 298 | 164 | 453 | 6.70e-177 | 497 |
| MS.gene22695.t1 | MTR_3g091250 | 49.254 | 67 | 34 | 0 | 244 | 310 | 238 | 304 | 6.53e-12 | 66.2 |
| MS.gene22695.t1 | MTR_3g091250 | 49.254 | 67 | 34 | 0 | 244 | 310 | 186 | 252 | 9.82e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22695.t1 | AT4G01000 | 40.468 | 299 | 134 | 8 | 2 | 298 | 146 | 402 | 4.65e-42 | 150 |
| MS.gene22695.t1 | AT4G01000 | 40.468 | 299 | 134 | 8 | 2 | 298 | 146 | 402 | 4.65e-42 | 150 |
| MS.gene22695.t1 | AT3G06455 | 32.323 | 297 | 138 | 6 | 2 | 298 | 99 | 332 | 1.91e-23 | 99.0 |
| MS.gene22695.t1 | AT5G06160 | 44.737 | 76 | 42 | 0 | 235 | 310 | 224 | 299 | 6.47e-11 | 63.5 |
Find 72 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCGGGATGGAGACTCTTC+TGG | 0.272046 | 7.4:-1120942 | MS.gene22695:CDS |
| ACAGATGAAGAAGAATAATA+AGG | 0.283291 | 7.4:-1121990 | None:intergenic |
| TTCTTTGCTAGCAGTTTCTT+TGG | 0.292463 | 7.4:+1120069 | None:intergenic |
| ATCGGATCTTCACAGGTTCT+TGG | 0.315422 | 7.4:-1120204 | MS.gene22695:intron |
| TTAAGAGGATCGTCCTTTGC+TGG | 0.333012 | 7.4:+1120564 | None:intergenic |
| GCGTAAATCTTCGCCTATAT+CGG | 0.339518 | 7.4:-1121849 | MS.gene22695:CDS |
| CGAGGTTGCTGAGTCTGTTC+AGG | 0.354811 | 7.4:-1121891 | MS.gene22695:CDS |
| TTAAATAGTCAGAATGAGTC+TGG | 0.356655 | 7.4:-1121008 | MS.gene22695:CDS |
| ACCATCAATTTCCATGTCAT+TGG | 0.359097 | 7.4:+1120641 | None:intergenic |
| ATCTTCACAGGTTCTTGGCT+TGG | 0.364032 | 7.4:-1120199 | MS.gene22695:intron |
| GAAGGAGAACCTTCCGATAT+AGG | 0.369001 | 7.4:+1121836 | None:intergenic |
| CCTCAATACTTTCAGTACTC+TGG | 0.376570 | 7.4:+1120841 | None:intergenic |
| GAATGAGTCTGGGTTAAATA+AGG | 0.399492 | 7.4:-1120997 | MS.gene22695:CDS |
| AGCGGGATGGAGACTCTTCT+GGG | 0.412894 | 7.4:-1120941 | MS.gene22695:CDS |
| TTCAGAGCTCACAACATTTG+AGG | 0.417451 | 7.4:+1120671 | None:intergenic |
| GAAGTATGTTGCTAAGTATA+GGG | 0.417452 | 7.4:-1121936 | MS.gene22695:CDS |
| GATGGAGACTCTTCTGGGGT+TGG | 0.417585 | 7.4:-1120936 | MS.gene22695:CDS |
| GTTTCTTTGGAAGTTTATCC+AGG | 0.422846 | 7.4:+1120082 | None:intergenic |
| GGCAGTTCTGATTCTGTGAC+TGG | 0.424980 | 7.4:-1120969 | MS.gene22695:CDS |
| ATCAGAAGAAGTTGAAGATA+TGG | 0.428385 | 7.4:-1121808 | MS.gene22695:intron |
| AGAAGTATGTTGCTAAGTAT+AGG | 0.436725 | 7.4:-1121937 | MS.gene22695:CDS |
| AAAATGTGGAGGTACCTTGC+AGG | 0.440077 | 7.4:-1120142 | MS.gene22695:CDS |
| CAGATGAAGAAGAATAATAA+GGG | 0.448440 | 7.4:-1121989 | MS.gene22695:CDS |
| TATCATGATAACAAGGTTGA+TGG | 0.462781 | 7.4:-1120708 | MS.gene22695:CDS |
| CTCAATACTTTCAGTACTCT+GGG | 0.463892 | 7.4:+1120842 | None:intergenic |
| GAGTGGATCTGAAGAAGAAA+AGG | 0.466233 | 7.4:-1120904 | MS.gene22695:CDS |
| GAAGAAGAAAAGGAAACTGT+TGG | 0.487707 | 7.4:-1120894 | MS.gene22695:CDS |
| TTTGCTGGAACACCAGTGCT+TGG | 0.490464 | 7.4:+1120579 | None:intergenic |
| AATAAGGGCAAGGGCAAGAA+TGG | 0.492932 | 7.4:-1121974 | MS.gene22695:CDS |
| ATCATTTCATCATTTACCAT+GGG | 0.501811 | 7.4:+1120795 | None:intergenic |
| CATGGTAAATGATGAAATGA+TGG | 0.514855 | 7.4:-1120793 | MS.gene22695:CDS |
| CATCATTTCATCATTTACCA+TGG | 0.515931 | 7.4:+1120794 | None:intergenic |
| GAAGAAAGCTTGCCAAGCAC+TGG | 0.520320 | 7.4:-1120591 | MS.gene22695:CDS |
| TGTGCCTTGTTCAGAGACCT+TGG | 0.531201 | 7.4:-1120760 | MS.gene22695:CDS |
| AACACTAATTAAAGAATCCA+AGG | 0.536283 | 7.4:+1120743 | None:intergenic |
| TAATTCAGCTGCAGAACTTG+AGG | 0.539580 | 7.4:-1120529 | MS.gene22695:intron |
| GAAGAAGAATAATAAGGGCA+AGG | 0.542452 | 7.4:-1121984 | MS.gene22695:CDS |
| TTCTGTGACTGGTTTCAAGC+GGG | 0.549906 | 7.4:-1120958 | MS.gene22695:CDS |
| GTGACTGGTTTCAAGCGGGA+TGG | 0.556871 | 7.4:-1120954 | MS.gene22695:CDS |
| TCCAATGACATGGAAATTGA+TGG | 0.558112 | 7.4:-1120642 | MS.gene22695:CDS |
| CGAAGATGTTATTGATGACG+AGG | 0.561323 | 7.4:-1121054 | MS.gene22695:CDS |
| AAGCACTGGTGTTCCAGCAA+AGG | 0.570107 | 7.4:-1120577 | MS.gene22695:CDS |
| AACTTCTTCTGATCACGAGA+AGG | 0.570934 | 7.4:+1121818 | None:intergenic |
| GAAAAGGAAACTGTTGGAGA+AGG | 0.579332 | 7.4:-1120888 | MS.gene22695:CDS |
| CTGAACAGACTCAGCAACCT+CGG | 0.579574 | 7.4:+1121892 | None:intergenic |
| AAGAAGAATAATAAGGGCAA+GGG | 0.580783 | 7.4:-1121983 | MS.gene22695:CDS |
| ATTCTGTGACTGGTTTCAAG+CGG | 0.583157 | 7.4:-1120959 | MS.gene22695:CDS |
| GAATCCAAGGTCTCTGAACA+AGG | 0.583373 | 7.4:+1120756 | None:intergenic |
| CAGTCACGTGGGTTAAAATG+TGG | 0.586278 | 7.4:-1120156 | MS.gene22695:CDS |
| AAGACTGAACTCCAGTCACG+TGG | 0.587749 | 7.4:-1120168 | MS.gene22695:CDS |
| TTTCTTTGGAAGTTTATCCA+GGG | 0.590609 | 7.4:+1120083 | None:intergenic |
| GGGCAAGAATGGTGATGTTG+AGG | 0.591724 | 7.4:-1121963 | MS.gene22695:CDS |
| CCAGAGTACTGAAAGTATTG+AGG | 0.594120 | 7.4:-1120841 | MS.gene22695:CDS |
| GGGGTTGGTTCGTGTGAGAG+TGG | 0.594468 | 7.4:-1120921 | MS.gene22695:CDS |
| CGATGATTATCATGATAACA+AGG | 0.595765 | 7.4:-1120715 | MS.gene22695:CDS |
| TTCTTTGGAAGTTTATCCAG+GGG | 0.596324 | 7.4:+1120084 | None:intergenic |
| CCTTGCAGGAACGTGCTGCA+AGG | 0.598001 | 7.4:-1120128 | MS.gene22695:CDS |
| GATAACAAGGTTGATGGCAC+TGG | 0.601861 | 7.4:-1120702 | MS.gene22695:CDS |
| TAAATAGTCAGAATGAGTCT+GGG | 0.611598 | 7.4:-1121007 | MS.gene22695:CDS |
| GAGTATTGCTGCTGAACCCA+TGG | 0.612217 | 7.4:-1120811 | MS.gene22695:CDS |
| CCTTGCAGCACGTTCCTGCA+AGG | 0.614731 | 7.4:+1120128 | None:intergenic |
| AAATCTTCGCCTATATCGGA+AGG | 0.617442 | 7.4:-1121845 | MS.gene22695:CDS |
| TGAAGTTGTGTCCAATGACA+TGG | 0.622374 | 7.4:-1120652 | MS.gene22695:CDS |
| ATCTGAACGTTGTGTTGCCG+AGG | 0.627853 | 7.4:-1121909 | MS.gene22695:CDS |
| TCTGGGTTAAATAAGGCTGA+AGG | 0.629889 | 7.4:-1120990 | MS.gene22695:CDS |
| AACTGTTGGAGAAGGCAAAG+TGG | 0.640041 | 7.4:-1120880 | MS.gene22695:CDS |
| GCGGGATGGAGACTCTTCTG+GGG | 0.663980 | 7.4:-1120940 | MS.gene22695:CDS |
| GGTAAATGATGAAATGATGG+AGG | 0.678864 | 7.4:-1120790 | MS.gene22695:CDS |
| TCACGTGGGTTAAAATGTGG+AGG | 0.682462 | 7.4:-1120153 | MS.gene22695:CDS |
| TTCTCTTGAGCATAAAACAG+TGG | 0.706732 | 7.4:-1120619 | MS.gene22695:CDS |
| GAAGATGTTATTGATGACGA+GGG | 0.732172 | 7.4:-1121053 | MS.gene22695:CDS |
| AGACTGAACTCCAGTCACGT+GGG | 0.739643 | 7.4:-1120167 | MS.gene22695:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTTAGAAAAAATATAAATA+TGG | + | chr7.4:1121685-1121704 | None:intergenic | 10.0% |
| !! | ATATATATATATATAGGTTT+AGG | - | chr7.4:1120542-1120561 | MS.gene22695:CDS | 10.0% |
| !! | GTGTATATATATATATATAT+AGG | - | chr7.4:1120536-1120555 | MS.gene22695:CDS | 10.0% |
| !! | TATATATATATATAGGTTTA+GGG | - | chr7.4:1120543-1120562 | MS.gene22695:CDS | 10.0% |
| !!! | ACAAATTGATTTTATAAATT+TGG | - | chr7.4:1120385-1120404 | MS.gene22695:intron | 10.0% |
| !!! | ATATTTTTAAAACATAATGA+GGG | - | chr7.4:1121546-1121565 | MS.gene22695:intron | 10.0% |
| !!! | TATATTTTTAAAACATAATG+AGG | - | chr7.4:1121545-1121564 | MS.gene22695:intron | 10.0% |
| !! | TATGGTTTAAATTATTATGA+AGG | - | chr7.4:1120316-1120335 | MS.gene22695:intron | 15.0% |
| !! | TTAAAAACATCAAAATTAAG+AGG | + | chr7.4:1121505-1121524 | None:intergenic | 15.0% |
| !! | TTAAATTATTATGAAGGCAA+TGG | - | chr7.4:1120322-1120341 | MS.gene22695:intron | 20.0% |
| !!! | GATTTAAAATGGTTTATGTT+TGG | - | chr7.4:1120431-1120450 | MS.gene22695:intron | 20.0% |
| !!! | TGTATTTTTCAATTGTTGTA+TGG | - | chr7.4:1120298-1120317 | MS.gene22695:intron | 20.0% |
| !!! | TTTAGCAAACTCTTTTTTTA+AGG | - | chr7.4:1121652-1121671 | MS.gene22695:intron | 20.0% |
| ! | AAAATGTCATAACTCATAAG+CGG | - | chr7.4:1120754-1120773 | MS.gene22695:CDS | 25.0% |
| ! | AACAAATAGTACTTGATTAG+TGG | + | chr7.4:1121797-1121816 | None:intergenic | 25.0% |
| ! | AACACTAATTAAAGAATCCA+AGG | + | chr7.4:1121311-1121330 | None:intergenic | 25.0% |
| ! | ATCATTTCATCATTTACCAT+GGG | + | chr7.4:1121259-1121278 | None:intergenic | 25.0% |
| ! | CACATCCAAATTTCATATTA+AGG | + | chr7.4:1120856-1120875 | None:intergenic | 25.0% |
| ! | TTGGATGTGTTTATTTGTTT+GGG | - | chr7.4:1120867-1120886 | MS.gene22695:CDS | 25.0% |
| ! | TTTGGATGTGTTTATTTGTT+TGG | - | chr7.4:1120866-1120885 | MS.gene22695:CDS | 25.0% |
| !! | ATTGTTGGATTTTATGGATT+TGG | - | chr7.4:1120893-1120912 | MS.gene22695:CDS | 25.0% |
| !! | TAAGTTTGATGTATTTTCCA+TGG | - | chr7.4:1121824-1121843 | MS.gene22695:CDS | 25.0% |
| !! | TCAGTTCTTTAGTTTATGTT+TGG | - | chr7.4:1120476-1120495 | MS.gene22695:intron | 25.0% |
| !!! | AATTTGGTTTTGATTGAAAG+TGG | - | chr7.4:1120401-1120420 | MS.gene22695:intron | 25.0% |
| !!! | ATAAGTTTTGTGAGATTGTT+TGG | + | chr7.4:1120795-1120814 | None:intergenic | 25.0% |
| !!! | ATTTGGTTTTGATTGAAAGT+GGG | - | chr7.4:1120402-1120421 | MS.gene22695:intron | 25.0% |
| !!! | TAAGTTTTGTGAGATTGTTT+GGG | + | chr7.4:1120794-1120813 | None:intergenic | 25.0% |
| AAAACTAAGACGAACCAAAA+TGG | + | chr7.4:1120273-1120292 | None:intergenic | 30.0% | |
| AAGAAGAATAATAAGGGCAA+GGG | - | chr7.4:1120068-1120087 | MS.gene22695:CDS | 30.0% | |
| ATCAGAAGAAGTTGAAGATA+TGG | - | chr7.4:1120243-1120262 | MS.gene22695:intron | 30.0% | |
| CAGGACCTTAATATGAAATT+TGG | - | chr7.4:1120848-1120867 | MS.gene22695:CDS | 30.0% | |
| CATCATTTCATCATTTACCA+TGG | + | chr7.4:1121260-1121279 | None:intergenic | 30.0% | |
| CATGGTAAATGATGAAATGA+TGG | - | chr7.4:1121258-1121277 | MS.gene22695:intron | 30.0% | |
| CGATGATTATCATGATAACA+AGG | - | chr7.4:1121336-1121355 | MS.gene22695:intron | 30.0% | |
| GAAGTATGTTGCTAAGTATA+GGG | - | chr7.4:1120115-1120134 | MS.gene22695:CDS | 30.0% | |
| GCTATAGAAATAGCTTATGA+AGG | + | chr7.4:1120634-1120653 | None:intergenic | 30.0% | |
| TAAATAGTCAGAATGAGTCT+GGG | - | chr7.4:1121044-1121063 | MS.gene22695:CDS | 30.0% | |
| TATCATGATAACAAGGTTGA+TGG | - | chr7.4:1121343-1121362 | MS.gene22695:intron | 30.0% | |
| TATTTGTTTGGGTCAATTGT+TGG | - | chr7.4:1120878-1120897 | MS.gene22695:CDS | 30.0% | |
| TTAAATAGTCAGAATGAGTC+TGG | - | chr7.4:1121043-1121062 | MS.gene22695:CDS | 30.0% | |
| ! | AGAAGTATGTTGCTAAGTAT+AGG | - | chr7.4:1120114-1120133 | MS.gene22695:CDS | 30.0% |
| ! | TTGATGTATTTTCCATGGAT+CGG | - | chr7.4:1121829-1121848 | MS.gene22695:CDS | 30.0% |
| ! | TTTCTTTGGAAGTTTATCCA+GGG | + | chr7.4:1121971-1121990 | None:intergenic | 30.0% |
| !!! | ATTTTGGTTCGTCTTAGTTT+TGG | - | chr7.4:1120272-1120291 | MS.gene22695:intron | 30.0% |
| !!! | TGTTGTTGTTTGCTTTTTCT+AGG | - | chr7.4:1120933-1120952 | MS.gene22695:CDS | 30.0% |
| !!! | TTGTTTGCTTTTTCTAGGAT+GGG | - | chr7.4:1120938-1120957 | MS.gene22695:CDS | 30.0% |
| ACCATCAATTTCCATGTCAT+TGG | + | chr7.4:1121413-1121432 | None:intergenic | 35.0% | |
| CTCAATACTTTCAGTACTCT+GGG | + | chr7.4:1121212-1121231 | None:intergenic | 35.0% | |
| GAAGAAGAAAAGGAAACTGT+TGG | - | chr7.4:1121157-1121176 | MS.gene22695:intron | 35.0% | |
| GAAGAAGAATAATAAGGGCA+AGG | - | chr7.4:1120067-1120086 | MS.gene22695:CDS | 35.0% | |
| GAATGAGTCTGGGTTAAATA+AGG | - | chr7.4:1121054-1121073 | MS.gene22695:CDS | 35.0% | |
| GGTAAATGATGAAATGATGG+AGG | - | chr7.4:1121261-1121280 | MS.gene22695:intron | 35.0% | |
| TATTAAGGTCCTGTTAGCAT+TGG | + | chr7.4:1120841-1120860 | None:intergenic | 35.0% | |
| TCAAATAAGCCAATGCTAAC+AGG | - | chr7.4:1120829-1120848 | MS.gene22695:CDS | 35.0% | |
| TCCAATGACATGGAAATTGA+TGG | - | chr7.4:1121409-1121428 | MS.gene22695:intron | 35.0% | |
| TTAGTGTGTGTTTGCTTATG+CGG | - | chr7.4:1120358-1120377 | MS.gene22695:intron | 35.0% | |
| TTCTCTTGAGCATAAAACAG+TGG | - | chr7.4:1121432-1121451 | MS.gene22695:intron | 35.0% | |
| TTCTTTGCTAGCAGTTTCTT+TGG | + | chr7.4:1121985-1122004 | None:intergenic | 35.0% | |
| ! | ATATAGGTTTAGGGTCTGTT+TGG | - | chr7.4:1120552-1120571 | MS.gene22695:CDS | 35.0% |
| ! | GAAGATATGGTAAGCCATTT+TGG | - | chr7.4:1120256-1120275 | MS.gene22695:intron | 35.0% |
| ! | GGGTCAATTGTTGGATTTTA+TGG | - | chr7.4:1120887-1120906 | MS.gene22695:CDS | 35.0% |
| ! | GTTTCTTTGGAAGTTTATCC+AGG | + | chr7.4:1121972-1121991 | None:intergenic | 35.0% |
| ! | TATAGGTTTAGGGTCTGTTT+GGG | - | chr7.4:1120553-1120572 | MS.gene22695:CDS | 35.0% |
| ! | TTCTTTGGAAGTTTATCCAG+GGG | + | chr7.4:1121970-1121989 | None:intergenic | 35.0% |
| !! | GAAGATGTTATTGATGACGA+GGG | - | chr7.4:1120998-1121017 | MS.gene22695:CDS | 35.0% |
| !!! | GTTGTTTGCTTTTTCTAGGA+TGG | - | chr7.4:1120937-1120956 | MS.gene22695:CDS | 35.0% |
| !!! | TCTTTTAAAATCAACTCCCC+TGG | - | chr7.4:1121951-1121970 | MS.gene22695:CDS | 35.0% |
| !!! | TGTTTGCTTTTTCTAGGATG+GGG | - | chr7.4:1120939-1120958 | MS.gene22695:CDS | 35.0% |
| AAATCTTCGCCTATATCGGA+AGG | - | chr7.4:1120206-1120225 | MS.gene22695:intron | 40.0% | |
| AACTTCTTCTGATCACGAGA+AGG | + | chr7.4:1120236-1120255 | None:intergenic | 40.0% | |
| CCTCAATACTTTCAGTACTC+TGG | + | chr7.4:1121213-1121232 | None:intergenic | 40.0% | |
| GAAAAGGAAACTGTTGGAGA+AGG | - | chr7.4:1121163-1121182 | MS.gene22695:intron | 40.0% | |
| GAGTGGATCTGAAGAAGAAA+AGG | - | chr7.4:1121147-1121166 | MS.gene22695:intron | 40.0% | |
| GCGTAAATCTTCGCCTATAT+CGG | - | chr7.4:1120202-1120221 | MS.gene22695:intron | 40.0% | |
| TAATTCAGCTGCAGAACTTG+AGG | - | chr7.4:1121522-1121541 | MS.gene22695:intron | 40.0% | |
| TCTGGGTTAAATAAGGCTGA+AGG | - | chr7.4:1121061-1121080 | MS.gene22695:CDS | 40.0% | |
| TGAAGTTGTGTCCAATGACA+TGG | - | chr7.4:1121399-1121418 | MS.gene22695:intron | 40.0% | |
| TTCAGAGCTCACAACATTTG+AGG | + | chr7.4:1121383-1121402 | None:intergenic | 40.0% | |
| ! | GTGGGTCGGTTGATTTAAAA+TGG | - | chr7.4:1120420-1120439 | MS.gene22695:intron | 40.0% |
| !! | ATTCTGTGACTGGTTTCAAG+CGG | - | chr7.4:1121092-1121111 | MS.gene22695:CDS | 40.0% |
| !! | CCAGAGTACTGAAAGTATTG+AGG | - | chr7.4:1121210-1121229 | MS.gene22695:intron | 40.0% |
| !! | CGAAGATGTTATTGATGACG+AGG | - | chr7.4:1120997-1121016 | MS.gene22695:CDS | 40.0% |
| !!! | GGTTTTGATTGAAAGTGGGT+CGG | - | chr7.4:1120406-1120425 | MS.gene22695:intron | 40.0% |
| !!! | TTTTTCTAGGATGGGGAAGA+GGG | - | chr7.4:1120946-1120965 | MS.gene22695:CDS | 40.0% |
| AACTGTTGGAGAAGGCAAAG+TGG | - | chr7.4:1121171-1121190 | MS.gene22695:intron | 45.0% | |
| AATAAGGGCAAGGGCAAGAA+TGG | - | chr7.4:1120077-1120096 | MS.gene22695:CDS | 45.0% | |
| ATCGGATCTTCACAGGTTCT+TGG | - | chr7.4:1121847-1121866 | MS.gene22695:CDS | 45.0% | |
| ATCTTCACAGGTTCTTGGCT+TGG | - | chr7.4:1121852-1121871 | MS.gene22695:CDS | 45.0% | |
| GAAGGAGAACCTTCCGATAT+AGG | + | chr7.4:1120218-1120237 | None:intergenic | 45.0% | |
| GAATCCAAGGTCTCTGAACA+AGG | + | chr7.4:1121298-1121317 | None:intergenic | 45.0% | |
| TTAAGAGGATCGTCCTTTGC+TGG | + | chr7.4:1121490-1121509 | None:intergenic | 45.0% | |
| ! | CAGTCACGTGGGTTAAAATG+TGG | - | chr7.4:1121895-1121914 | MS.gene22695:CDS | 45.0% |
| ! | TCACGTGGGTTAAAATGTGG+AGG | - | chr7.4:1121898-1121917 | MS.gene22695:CDS | 45.0% |
| !! | AAAATGTGGAGGTACCTTGC+AGG | - | chr7.4:1121909-1121928 | MS.gene22695:CDS | 45.0% |
| !! | CACATTTTAACCCACGTGAC+TGG | + | chr7.4:1121897-1121916 | None:intergenic | 45.0% |
| !! | GATAACAAGGTTGATGGCAC+TGG | - | chr7.4:1121349-1121368 | MS.gene22695:intron | 45.0% |
| !! | TTCTGTGACTGGTTTCAAGC+GGG | - | chr7.4:1121093-1121112 | MS.gene22695:CDS | 45.0% |
| !!! | CTTTTTCTAGGATGGGGAAG+AGG | - | chr7.4:1120945-1120964 | MS.gene22695:CDS | 45.0% |
| AAGACTGAACTCCAGTCACG+TGG | - | chr7.4:1121883-1121902 | MS.gene22695:CDS | 50.0% | |
| ACCTGTGAAGATCCGATCCA+TGG | + | chr7.4:1121844-1121863 | None:intergenic | 50.0% | |
| AGACTGAACTCCAGTCACGT+GGG | - | chr7.4:1121884-1121903 | MS.gene22695:CDS | 50.0% | |
| ATCTGAACGTTGTGTTGCCG+AGG | - | chr7.4:1120142-1120161 | MS.gene22695:CDS | 50.0% | |
| CTGAACAGACTCAGCAACCT+CGG | + | chr7.4:1120162-1120181 | None:intergenic | 50.0% | |
| GAAGAAAGCTTGCCAAGCAC+TGG | - | chr7.4:1121460-1121479 | MS.gene22695:intron | 50.0% | |
| TCCATGGATCGGATCTTCAC+AGG | - | chr7.4:1121840-1121859 | MS.gene22695:CDS | 50.0% | |
| TTTGCTGGAACACCAGTGCT+TGG | + | chr7.4:1121475-1121494 | None:intergenic | 50.0% | |
| ! | GAGTATTGCTGCTGAACCCA+TGG | - | chr7.4:1121240-1121259 | MS.gene22695:intron | 50.0% |
| ! | GGCAGTTCTGATTCTGTGAC+TGG | - | chr7.4:1121082-1121101 | MS.gene22695:CDS | 50.0% |
| ! | GGGCAAGAATGGTGATGTTG+AGG | - | chr7.4:1120088-1120107 | MS.gene22695:CDS | 50.0% |
| ! | TGTGCCTTGTTCAGAGACCT+TGG | - | chr7.4:1121291-1121310 | MS.gene22695:intron | 50.0% |
| !! | AAGCACTGGTGTTCCAGCAA+AGG | - | chr7.4:1121474-1121493 | MS.gene22695:intron | 50.0% |
| AAGCGGGATGGAGACTCTTC+TGG | - | chr7.4:1121109-1121128 | MS.gene22695:intron | 55.0% | |
| AGCGGGATGGAGACTCTTCT+GGG | - | chr7.4:1121110-1121129 | MS.gene22695:intron | 55.0% | |
| CGAGGTTGCTGAGTCTGTTC+AGG | - | chr7.4:1120160-1120179 | MS.gene22695:CDS | 55.0% | |
| !! | GATGGAGACTCTTCTGGGGT+TGG | - | chr7.4:1121115-1121134 | MS.gene22695:intron | 55.0% |
| !! | GTGACTGGTTTCAAGCGGGA+TGG | - | chr7.4:1121097-1121116 | MS.gene22695:CDS | 55.0% |
| CCTTGCAGCACGTTCCTGCA+AGG | + | chr7.4:1121926-1121945 | None:intergenic | 60.0% | |
| CCTTGCAGGAACGTGCTGCA+AGG | - | chr7.4:1121923-1121942 | MS.gene22695:CDS | 60.0% | |
| GCGGGATGGAGACTCTTCTG+GGG | - | chr7.4:1121111-1121130 | MS.gene22695:intron | 60.0% | |
| !! | GGGGTTGGTTCGTGTGAGAG+TGG | - | chr7.4:1121130-1121149 | MS.gene22695:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 1120065 | 1122008 | 1120065 | ID=MS.gene22695 |
| chr7.4 | mRNA | 1120065 | 1122008 | 1120065 | ID=MS.gene22695.t1;Parent=MS.gene22695 |
| chr7.4 | exon | 1121809 | 1122008 | 1121809 | ID=MS.gene22695.t1.exon1;Parent=MS.gene22695.t1 |
| chr7.4 | CDS | 1121809 | 1122008 | 1121809 | ID=cds.MS.gene22695.t1;Parent=MS.gene22695.t1 |
| chr7.4 | exon | 1120530 | 1121118 | 1120530 | ID=MS.gene22695.t1.exon2;Parent=MS.gene22695.t1 |
| chr7.4 | CDS | 1120530 | 1121118 | 1120530 | ID=cds.MS.gene22695.t1;Parent=MS.gene22695.t1 |
| chr7.4 | exon | 1120065 | 1120211 | 1120065 | ID=MS.gene22695.t1.exon3;Parent=MS.gene22695.t1 |
| chr7.4 | CDS | 1120065 | 1120211 | 1120065 | ID=cds.MS.gene22695.t1;Parent=MS.gene22695.t1 |
| Gene Sequence |
| Protein sequence |
