Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23935.t1 | XP_003603680.1 | 92.7 | 441 | 31 | 1 | 1 | 440 | 1 | 441 | 2.90E-226 | 794.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23935.t1 | Q9SXC4 | 56.2 | 443 | 142 | 8 | 1 | 440 | 1 | 394 | 7.3e-133 | 475.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23935.t1 | Q50HW4 | 92.7 | 441 | 31 | 1 | 1 | 440 | 1 | 441 | 2.1e-226 | 794.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene23935 | 0.813409 | 2.60E-51 | -1.69E-46 |
| MS.gene04915 | MS.gene23935 | 0.808131 | 3.60E-50 | -1.69E-46 |
| MS.gene049166 | MS.gene23935 | 0.812375 | 4.38E-51 | -1.69E-46 |
| MS.gene04917 | MS.gene23935 | 0.812844 | 3.45E-51 | -1.69E-46 |
| MS.gene049208 | MS.gene23935 | 0.808501 | 3.00E-50 | -1.69E-46 |
| MS.gene049368 | MS.gene23935 | 0.816154 | 6.40E-52 | -1.69E-46 |
| MS.gene049411 | MS.gene23935 | 0.819366 | 1.21E-52 | -1.69E-46 |
| MS.gene049685 | MS.gene23935 | 0.808187 | 3.50E-50 | -1.69E-46 |
| MS.gene049807 | MS.gene23935 | 0.806248 | 9.02E-50 | -1.69E-46 |
| MS.gene049887 | MS.gene23935 | 0.826224 | 3.05E-54 | -1.69E-46 |
| MS.gene050085 | MS.gene23935 | 0.813197 | 2.89E-51 | -1.69E-46 |
| MS.gene050114 | MS.gene23935 | 0.813228 | 2.85E-51 | -1.69E-46 |
| MS.gene050317 | MS.gene23935 | 0.815859 | 7.45E-52 | -1.69E-46 |
| MS.gene050359 | MS.gene23935 | 0.828497 | 8.70E-55 | -1.69E-46 |
| MS.gene050386 | MS.gene23935 | 0.804885 | 1.74E-49 | -1.69E-46 |
| MS.gene050646 | MS.gene23935 | 0.833723 | 4.53E-56 | -1.69E-46 |
| MS.gene050654 | MS.gene23935 | 0.827056 | 1.93E-54 | -1.69E-46 |
| MS.gene050689 | MS.gene23935 | 0.851404 | 9.07E-61 | -1.69E-46 |
| MS.gene050752 | MS.gene23935 | 0.848098 | 7.61E-60 | -1.69E-46 |
| MS.gene050838 | MS.gene23935 | 0.902961 | 5.67E-79 | -1.69E-46 |
| MS.gene050931 | MS.gene23935 | 0.808943 | 2.42E-50 | -1.69E-46 |
| MS.gene050941 | MS.gene23935 | 0.815823 | 7.59E-52 | -1.69E-46 |
| MS.gene050955 | MS.gene23935 | 0.805972 | 1.03E-49 | -1.69E-46 |
| MS.gene051003 | MS.gene23935 | 0.878517 | 2.64E-69 | -1.69E-46 |
| MS.gene051102 | MS.gene23935 | 0.803469 | 3.43E-49 | -1.69E-46 |
| MS.gene051233 | MS.gene23935 | 0.82255 | 2.23E-53 | -1.69E-46 |
| MS.gene051234 | MS.gene23935 | 0.871425 | 6.90E-67 | -1.69E-46 |
| MS.gene051343 | MS.gene23935 | 0.865612 | 5.20E-65 | -1.69E-46 |
| MS.gene051381 | MS.gene23935 | 0.829888 | 4.00E-55 | -1.69E-46 |
| MS.gene051642 | MS.gene23935 | 0.850161 | 2.03E-60 | -1.69E-46 |
| MS.gene051850 | MS.gene23935 | 0.80473 | 1.88E-49 | -1.69E-46 |
| MS.gene051852 | MS.gene23935 | 0.808226 | 3.44E-50 | -1.69E-46 |
| MS.gene051902 | MS.gene23935 | 0.842046 | 3.28E-58 | -1.69E-46 |
| MS.gene052072 | MS.gene23935 | 0.817604 | 3.03E-52 | -1.69E-46 |
| MS.gene052242 | MS.gene23935 | -0.801884 | 7.29E-49 | -1.69E-46 |
| MS.gene052296 | MS.gene23935 | 0.82999 | 3.78E-55 | -1.69E-46 |
| MS.gene052307 | MS.gene23935 | 0.858 | 1.11E-62 | -1.69E-46 |
| MS.gene052335 | MS.gene23935 | 0.857616 | 1.45E-62 | -1.69E-46 |
| MS.gene052342 | MS.gene23935 | 0.837447 | 5.17E-57 | -1.69E-46 |
| MS.gene052397 | MS.gene23935 | 0.813547 | 2.42E-51 | -1.69E-46 |
| MS.gene052434 | MS.gene23935 | 0.840751 | 7.20E-58 | -1.69E-46 |
| MS.gene052609 | MS.gene23935 | 0.848041 | 7.89E-60 | -1.69E-46 |
| MS.gene052932 | MS.gene23935 | 0.815351 | 9.67E-52 | -1.69E-46 |
| MS.gene053058 | MS.gene23935 | 0.848975 | 4.35E-60 | -1.69E-46 |
| MS.gene053143 | MS.gene23935 | 0.845528 | 3.84E-59 | -1.69E-46 |
| MS.gene053167 | MS.gene23935 | 0.818116 | 2.32E-52 | -1.69E-46 |
| MS.gene053381 | MS.gene23935 | 0.811728 | 6.06E-51 | -1.69E-46 |
| MS.gene053456 | MS.gene23935 | 0.803855 | 2.86E-49 | -1.69E-46 |
| MS.gene053564 | MS.gene23935 | 0.805046 | 1.61E-49 | -1.69E-46 |
| MS.gene053581 | MS.gene23935 | 0.806022 | 1.01E-49 | -1.69E-46 |
| MS.gene053786 | MS.gene23935 | 0.820358 | 7.16E-53 | -1.69E-46 |
| MS.gene054004 | MS.gene23935 | 0.822435 | 2.37E-53 | -1.69E-46 |
| MS.gene054403 | MS.gene23935 | 0.844116 | 9.23E-59 | -1.69E-46 |
| MS.gene054823 | MS.gene23935 | 0.807807 | 4.22E-50 | -1.69E-46 |
| MS.gene055311 | MS.gene23935 | 0.840821 | 6.90E-58 | -1.69E-46 |
| MS.gene055313 | MS.gene23935 | 0.809766 | 1.61E-50 | -1.69E-46 |
| MS.gene055314 | MS.gene23935 | 0.819239 | 1.29E-52 | -1.69E-46 |
| MS.gene055513 | MS.gene23935 | 0.846115 | 2.66E-59 | -1.69E-46 |
| MS.gene056045 | MS.gene23935 | 0.806518 | 7.91E-50 | -1.69E-46 |
| MS.gene056097 | MS.gene23935 | 0.849077 | 4.08E-60 | -1.69E-46 |
| MS.gene056181 | MS.gene23935 | 0.871132 | 8.63E-67 | -1.69E-46 |
| MS.gene056308 | MS.gene23935 | 0.805422 | 1.35E-49 | -1.69E-46 |
| MS.gene056390 | MS.gene23935 | 0.824896 | 6.30E-54 | -1.69E-46 |
| MS.gene056578 | MS.gene23935 | 0.838749 | 2.39E-57 | -1.69E-46 |
| MS.gene056752 | MS.gene23935 | 0.848151 | 7.36E-60 | -1.69E-46 |
| MS.gene056787 | MS.gene23935 | 0.840458 | 8.59E-58 | -1.69E-46 |
| MS.gene056992 | MS.gene23935 | 0.834742 | 2.51E-56 | -1.69E-46 |
| MS.gene057057 | MS.gene23935 | 0.801773 | 7.69E-49 | -1.69E-46 |
| MS.gene057094 | MS.gene23935 | 0.809192 | 2.14E-50 | -1.69E-46 |
| MS.gene057102 | MS.gene23935 | 0.813069 | 3.08E-51 | -1.69E-46 |
| MS.gene057234 | MS.gene23935 | 0.816097 | 6.59E-52 | -1.69E-46 |
| MS.gene05781 | MS.gene23935 | 0.829657 | 4.55E-55 | -1.69E-46 |
| MS.gene057890 | MS.gene23935 | -0.802449 | 5.58E-49 | -1.69E-46 |
| MS.gene057999 | MS.gene23935 | 0.803547 | 3.31E-49 | -1.69E-46 |
| MS.gene058054 | MS.gene23935 | 0.823401 | 1.41E-53 | -1.69E-46 |
| MS.gene058055 | MS.gene23935 | 0.81607 | 6.68E-52 | -1.69E-46 |
| MS.gene058261 | MS.gene23935 | 0.838199 | 3.31E-57 | -1.69E-46 |
| MS.gene058278 | MS.gene23935 | 0.802083 | 6.64E-49 | -1.69E-46 |
| MS.gene058638 | MS.gene23935 | 0.827886 | 1.22E-54 | -1.69E-46 |
| MS.gene058639 | MS.gene23935 | 0.839779 | 1.29E-57 | -1.69E-46 |
| MS.gene058646 | MS.gene23935 | 0.830318 | 3.14E-55 | -1.69E-46 |
| MS.gene058654 | MS.gene23935 | 0.84688 | 1.64E-59 | -1.69E-46 |
| MS.gene058758 | MS.gene23935 | 0.850945 | 1.22E-60 | -1.69E-46 |
| MS.gene059007 | MS.gene23935 | 0.802702 | 4.95E-49 | -1.69E-46 |
| MS.gene059146 | MS.gene23935 | 0.818293 | 2.11E-52 | -1.69E-46 |
| MS.gene059170 | MS.gene23935 | 0.817043 | 4.05E-52 | -1.69E-46 |
| MS.gene059171 | MS.gene23935 | 0.830355 | 3.08E-55 | -1.69E-46 |
| MS.gene059227 | MS.gene23935 | 0.823777 | 1.15E-53 | -1.69E-46 |
| MS.gene059965 | MS.gene23935 | 0.806694 | 7.26E-50 | -1.69E-46 |
| MS.gene06010 | MS.gene23935 | 0.806667 | 7.36E-50 | -1.69E-46 |
| MS.gene06011 | MS.gene23935 | 0.826298 | 2.93E-54 | -1.69E-46 |
| MS.gene060296 | MS.gene23935 | 0.801462 | 8.90E-49 | -1.69E-46 |
| MS.gene060563 | MS.gene23935 | 0.859947 | 2.91E-63 | -1.69E-46 |
| MS.gene060763 | MS.gene23935 | 0.815297 | 9.94E-52 | -1.69E-46 |
| MS.gene060932 | MS.gene23935 | 0.807206 | 5.66E-50 | -1.69E-46 |
| MS.gene060937 | MS.gene23935 | 0.80021 | 1.60E-48 | -1.69E-46 |
| MS.gene061006 | MS.gene23935 | 0.848001 | 8.09E-60 | -1.69E-46 |
| MS.gene061100 | MS.gene23935 | 0.86189 | 7.46E-64 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23935.t1 | MTR_3g111060 | 96.599 | 441 | 14 | 1 | 1 | 440 | 1 | 441 | 0.0 | 889 |
| MS.gene23935.t1 | MTR_3g110142 | 41.593 | 452 | 228 | 9 | 1 | 436 | 1 | 432 | 1.72e-111 | 335 |
| MS.gene23935.t1 | MTR_3g110142 | 41.562 | 397 | 196 | 9 | 1 | 381 | 1 | 377 | 4.02e-93 | 286 |
| MS.gene23935.t1 | MTR_5g016600 | 28.041 | 296 | 162 | 9 | 187 | 440 | 151 | 437 | 1.73e-24 | 106 |
| MS.gene23935.t1 | MTR_4g094912 | 27.848 | 316 | 179 | 9 | 167 | 440 | 130 | 438 | 1.50e-22 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23935.t1 | AT1G27600 | 56.433 | 443 | 141 | 8 | 1 | 440 | 1 | 394 | 5.78e-172 | 488 |
| MS.gene23935.t1 | AT1G27600 | 56.433 | 443 | 141 | 8 | 1 | 440 | 1 | 394 | 5.78e-172 | 488 |
| MS.gene23935.t1 | AT2G37090 | 35.638 | 376 | 186 | 12 | 57 | 414 | 4 | 341 | 1.05e-70 | 227 |
| MS.gene23935.t1 | AT5G67230 | 30.479 | 292 | 163 | 9 | 187 | 440 | 152 | 441 | 1.21e-29 | 120 |
| MS.gene23935.t1 | AT4G36890 | 28.754 | 313 | 171 | 10 | 171 | 440 | 148 | 451 | 1.11e-26 | 112 |
Find 93 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCAAGAACAAGGCTATTT+TGG | 0.178767 | 3.1:+88735778 | MS.gene23935:CDS |
| TTCCACCAATTGTTCAATAA+AGG | 0.288276 | 3.1:-88736085 | None:intergenic |
| GGAAATGAATTCTGCTTCTA+TGG | 0.295993 | 3.1:+88734145 | MS.gene23935:CDS |
| GCGATTATTGAGAATTGATT+TGG | 0.304122 | 3.1:-88733829 | None:intergenic |
| AGATTTCATGTTGATATGTC+TGG | 0.307522 | 3.1:+88735869 | MS.gene23935:CDS |
| ACTGAGTCTAATTGCCGTAT+AGG | 0.330564 | 3.1:-88735953 | None:intergenic |
| GTAGGGCGCCGCCACCGCTT+TGG | 0.351660 | 3.1:-88735923 | None:intergenic |
| TGCGTTCTCTGTTTCTTCGT+TGG | 0.355661 | 3.1:+88733690 | MS.gene23935:CDS |
| GACCACCTTTATTGAACAAT+TGG | 0.367701 | 3.1:+88736080 | MS.gene23935:CDS |
| TTCTCAAGCATCCAACCCTT+TGG | 0.387858 | 3.1:-88736195 | None:intergenic |
| GCGTTCTCTGTTTCTTCGTT+GGG | 0.390433 | 3.1:+88733691 | MS.gene23935:CDS |
| ATTGAACATCATAAACTTGA+TGG | 0.398247 | 3.1:+88734284 | MS.gene23935:CDS |
| GCCCTACTTCAAATCCTATA+CGG | 0.399233 | 3.1:+88735939 | MS.gene23935:CDS |
| TCGTCGTTTCAGAGATTAAT+CGG | 0.401703 | 3.1:+88733609 | MS.gene23935:CDS |
| TTCAGACAATCAGAGATATC+AGG | 0.403188 | 3.1:+88734354 | MS.gene23935:CDS |
| AAAATAGCCTTGTTCTTGCT+TGG | 0.406483 | 3.1:-88735776 | None:intergenic |
| TTATTAGGTATGTTCCCTTT+CGG | 0.411490 | 3.1:+88733717 | MS.gene23935:CDS |
| CACGTCAGCGTCGGTGGTGG+TGG | 0.416469 | 3.1:+88733864 | MS.gene23935:CDS |
| GGATAAGGATAAGAAGAGTA+AGG | 0.423109 | 3.1:+88733896 | MS.gene23935:CDS |
| GTTGCAAGAAAATAATGAAT+TGG | 0.437417 | 3.1:+88736139 | MS.gene23935:CDS |
| CACGACCGTCACTACATAAA+CGG | 0.444334 | 3.1:+88733510 | MS.gene23935:CDS |
| AATGGCGAAAAGTTGCTTTC+AGG | 0.453308 | 3.1:+88733667 | MS.gene23935:CDS |
| CACAAACTTCCATCTTCAAA+CGG | 0.454365 | 3.1:+88733567 | MS.gene23935:CDS |
| TCAACGGATGTGAAGGATAG+AGG | 0.473437 | 3.1:+88734230 | MS.gene23935:CDS |
| CATAATATAGTTTATCCAAA+GGG | 0.474680 | 3.1:+88736180 | MS.gene23935:CDS |
| GAGTAGTTTCCGTTTGAAGA+TGG | 0.479126 | 3.1:-88733576 | None:intergenic |
| GATTTCATGTTGATATGTCT+GGG | 0.481532 | 3.1:+88735870 | MS.gene23935:CDS |
| TGTGGGATCCAAAGCGGTGG+CGG | 0.482823 | 3.1:+88735915 | MS.gene23935:CDS |
| AGATGGAGACGACGGTGAAA+AGG | 0.484318 | 3.1:-88733544 | None:intergenic |
| CACCTTTATTGAACAATTGG+TGG | 0.486008 | 3.1:+88736083 | MS.gene23935:CDS |
| TGACGTGGATGACAGCATCT+AGG | 0.490726 | 3.1:-88736221 | None:intergenic |
| TGGTGGTGATGATGAGGATA+AGG | 0.495077 | 3.1:+88733881 | MS.gene23935:CDS |
| CTTGGTGCAAGCATGGCGAC+AGG | 0.495355 | 3.1:-88735758 | None:intergenic |
| GCCGTATAGGATTTGAAGTA+GGG | 0.501903 | 3.1:-88735940 | None:intergenic |
| ATAATGAAAAGCTGAAAGAG+AGG | 0.501926 | 3.1:+88733970 | MS.gene23935:CDS |
| CATGAATGAGATTACCGAAA+GGG | 0.506123 | 3.1:-88733731 | None:intergenic |
| TAGTGACGGTCGTGATATGC+CGG | 0.506800 | 3.1:-88733501 | None:intergenic |
| ATTCCGACGGACGTTATCTC+CGG | 0.516727 | 3.1:+88733482 | MS.gene23935:CDS |
| GAAGATGGAAGTTTGTGAGA+TGG | 0.518700 | 3.1:-88733561 | None:intergenic |
| GTTCTTGCTTGGTGCAAGCA+TGG | 0.519522 | 3.1:-88735765 | None:intergenic |
| TGCCGTATAGGATTTGAAGT+AGG | 0.523006 | 3.1:-88735941 | None:intergenic |
| TTGAACATCATAAACTTGAT+GGG | 0.527171 | 3.1:+88734285 | MS.gene23935:CDS |
| AAGCACGTCAGCGTCGGTGG+TGG | 0.531902 | 3.1:+88733861 | MS.gene23935:CDS |
| GGGTGTGATGTATAGGCATT+TGG | 0.535560 | 3.1:+88734193 | MS.gene23935:CDS |
| GCAATTAGACTCAGTGAAAG+AGG | 0.535687 | 3.1:+88735961 | MS.gene23935:CDS |
| ATATAGTTTATCCAAAGGGT+TGG | 0.536359 | 3.1:+88736184 | MS.gene23935:CDS |
| TGCAATGGAAGCCAAGTGCT+TGG | 0.537309 | 3.1:+88735812 | MS.gene23935:CDS |
| ATTGATTTGGCATCAGATTG+TGG | 0.537571 | 3.1:-88733816 | None:intergenic |
| GATAAGGATAAGAAGAGTAA+GGG | 0.537759 | 3.1:+88733897 | MS.gene23935:CDS |
| TTGTATGCCACCCAAGCACT+TGG | 0.538534 | 3.1:-88735823 | None:intergenic |
| GGTGGAAGATGAGAGTCAAA+TGG | 0.541257 | 3.1:+88736101 | MS.gene23935:CDS |
| ATCTGAGAAAATTGATATTG+TGG | 0.542030 | 3.1:+88734004 | MS.gene23935:CDS |
| TCAAATGGAAGGTTCGCCAC+CGG | 0.544013 | 3.1:+88736116 | MS.gene23935:CDS |
| CACCAATTGTTCAATAAAGG+TGG | 0.551699 | 3.1:-88736082 | None:intergenic |
| CAAATGGAAGGTTCGCCACC+GGG | 0.554822 | 3.1:+88736117 | MS.gene23935:CDS |
| GCAATGGAAGCCAAGTGCTT+GGG | 0.557871 | 3.1:+88735813 | MS.gene23935:CDS |
| TAATGAAAAGCTGAAAGAGA+GGG | 0.563255 | 3.1:+88733971 | MS.gene23935:CDS |
| TAAGAATTCAACGGATGTGA+AGG | 0.565155 | 3.1:+88734223 | MS.gene23935:CDS |
| TTGGAGGGTCCGGTATGCAA+TGG | 0.566859 | 3.1:+88735797 | MS.gene23935:CDS |
| ACTTGGCTTCCATTGCATAC+CGG | 0.569129 | 3.1:-88735806 | None:intergenic |
| TCATCAGAGGAATAAAGCAT+TGG | 0.572046 | 3.1:+88734256 | MS.gene23935:CDS |
| ACCACCCATAAAAGCGGCGG+CGG | 0.572761 | 3.1:-88734119 | None:intergenic |
| TGAAAAGCGCGGTTATAAGT+CGG | 0.578372 | 3.1:-88734053 | None:intergenic |
| ATGCGACGATACAATCGAAA+GGG | 0.578550 | 3.1:+88733642 | MS.gene23935:CDS |
| AATTAATGGCGTCATTCCGA+CGG | 0.581992 | 3.1:+88733469 | None:intergenic |
| CATTCAACAGCACAATCCTG+TGG | 0.583078 | 3.1:+88735897 | MS.gene23935:CDS |
| CTCAAACATGAACGCTGAGA+AGG | 0.583981 | 3.1:+88733947 | MS.gene23935:CDS |
| TCATAATATAGTTTATCCAA+AGG | 0.585209 | 3.1:+88736179 | MS.gene23935:CDS |
| GATACAATCGAAAGGGACAA+TGG | 0.588516 | 3.1:+88733649 | MS.gene23935:CDS |
| CGGTGGTGGTGGTGATGATG+AGG | 0.599517 | 3.1:+88733875 | MS.gene23935:CDS |
| CAATTAGACTCAGTGAAAGA+GGG | 0.602242 | 3.1:+88735962 | MS.gene23935:CDS |
| GCTTGCACCAAGCAAGAACA+AGG | 0.606742 | 3.1:+88735769 | MS.gene23935:CDS |
| TCCTGTGGGATCCAAAGCGG+TGG | 0.608772 | 3.1:+88735912 | MS.gene23935:CDS |
| GCCACCGCTTTGGATCCCAC+AGG | 0.619308 | 3.1:-88735913 | None:intergenic |
| AGGATAGAGGAGTTCATCAG+AGG | 0.628437 | 3.1:+88734243 | MS.gene23935:CDS |
| CGTCACTACATAAACGGCGG+TGG | 0.628520 | 3.1:+88733516 | MS.gene23935:CDS |
| ATGGAAGCCAAGTGCTTGGG+TGG | 0.635295 | 3.1:+88735816 | MS.gene23935:CDS |
| TCCACCACCACCCATAAAAG+CGG | 0.639611 | 3.1:-88734125 | None:intergenic |
| TGGTGGAAGATTACTTGACG+TGG | 0.643604 | 3.1:-88736236 | None:intergenic |
| CATGCGACGATACAATCGAA+AGG | 0.645339 | 3.1:+88733641 | MS.gene23935:CDS |
| TGGAGACGACGGTGAAAAGG+CGG | 0.646294 | 3.1:-88733541 | None:intergenic |
| CACCGCCGTTTATGTAGTGA+CGG | 0.648586 | 3.1:-88733515 | None:intergenic |
| TCATGAATGAGATTACCGAA+AGG | 0.650007 | 3.1:-88733732 | None:intergenic |
| ATTCAACAGCACAATCCTGT+GGG | 0.650054 | 3.1:+88735898 | MS.gene23935:CDS |
| AGAAAATTGATATTGTGGCG+AGG | 0.651531 | 3.1:+88734009 | MS.gene23935:CDS |
| GAAGATGAGAGTCAAATGGA+AGG | 0.657273 | 3.1:+88736105 | MS.gene23935:CDS |
| ACCACCACCCATAAAAGCGG+CGG | 0.658671 | 3.1:-88734122 | None:intergenic |
| TCGTTTCAGAGATTAATCGG+TGG | 0.678331 | 3.1:+88733612 | MS.gene23935:CDS |
| GGTGTGTACTAAGAATTCAA+CGG | 0.679123 | 3.1:+88734214 | MS.gene23935:CDS |
| ATGCCGGAGATAACGTCCGT+CGG | 0.686418 | 3.1:-88733485 | None:intergenic |
| GACCGTCACTACATAAACGG+CGG | 0.698582 | 3.1:+88733513 | MS.gene23935:CDS |
| CAATCCTGTGGGATCCAAAG+CGG | 0.703864 | 3.1:+88735909 | MS.gene23935:CDS |
| AGTTTGTGAGATGGAGACGA+CGG | 0.778732 | 3.1:-88733552 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTTGAAAAATTCAAATT+TGG | - | chr3.1:88735476-88735495 | None:intergenic | 10.0% |
| !! | AAAAAAAAAACAATCATCAA+GGG | - | chr3.1:88734655-88734674 | None:intergenic | 15.0% |
| !! | AAATCAAAACAATACAAATT+AGG | - | chr3.1:88734987-88735006 | None:intergenic | 15.0% |
| !! | AATAATAATCCTAAAAAAGT+AGG | - | chr3.1:88734411-88734430 | None:intergenic | 15.0% |
| !! | ATAAAATTCATACAAAGAAA+CGG | - | chr3.1:88734701-88734720 | None:intergenic | 15.0% |
| !! | ATTAAATAAATTTGTGTGTT+TGG | + | chr3.1:88735506-88735525 | MS.gene23935:intron | 15.0% |
| !!! | ACTTTTTTAGGATTATTATT+CGG | + | chr3.1:88734411-88734430 | MS.gene23935:intron | 15.0% |
| !!! | ATTTTCCTTTTTTAATGAAA+TGG | + | chr3.1:88735447-88735466 | MS.gene23935:intron | 15.0% |
| !!! | TCTTTGTATGAATTTTATAA+CGG | + | chr3.1:88734703-88734722 | MS.gene23935:intron | 15.0% |
| !!! | TTTTTTCTCTTAAATATCTT+TGG | + | chr3.1:88734669-88734688 | MS.gene23935:intron | 15.0% |
| !! | AATCAATACATAACAATCAA+AGG | - | chr3.1:88735425-88735444 | None:intergenic | 20.0% |
| !! | CATAATATAGTTTATCCAAA+GGG | + | chr3.1:88736180-88736199 | MS.gene23935:CDS | 20.0% |
| !! | GAAAAAAAAAACAATCATCA+AGG | - | chr3.1:88734656-88734675 | None:intergenic | 20.0% |
| !! | GTGTAAATAAAAGTAATGAT+AGG | - | chr3.1:88736003-88736022 | None:intergenic | 20.0% |
| !! | TAAATAAAAGTAATGATAGG+AGG | - | chr3.1:88736000-88736019 | None:intergenic | 20.0% |
| !! | TCATAATATAGTTTATCCAA+AGG | + | chr3.1:88736179-88736198 | MS.gene23935:CDS | 20.0% |
| !!! | CATATTTTTTGAATAGGTTA+GGG | + | chr3.1:88734078-88734097 | MS.gene23935:CDS | 20.0% |
| !!! | CTTTGTATGAATTTTATAAC+GGG | + | chr3.1:88734704-88734723 | MS.gene23935:intron | 20.0% |
| !!! | TAAAGTTATATTGCTTGTTT+TGG | + | chr3.1:88734441-88734460 | MS.gene23935:intron | 20.0% |
| !!! | TCATATTTTTTGAATAGGTT+AGG | + | chr3.1:88734077-88734096 | MS.gene23935:CDS | 20.0% |
| !!! | TTCAGTCATATTTTTTGAAT+AGG | + | chr3.1:88734072-88734091 | MS.gene23935:CDS | 20.0% |
| ! | AAAACATGCTAATGTAACAA+AGG | - | chr3.1:88735086-88735105 | None:intergenic | 25.0% |
| ! | ATCTGAGAAAATTGATATTG+TGG | + | chr3.1:88734004-88734023 | MS.gene23935:CDS | 25.0% |
| ! | ATTGAACATCATAAACTTGA+TGG | + | chr3.1:88734284-88734303 | MS.gene23935:CDS | 25.0% |
| ! | CAGGAAATAAAGTGAAAATA+CGG | + | chr3.1:88735163-88735182 | MS.gene23935:intron | 25.0% |
| ! | CTCCTACACTTAATTAAAAA+GGG | - | chr3.1:88735269-88735288 | None:intergenic | 25.0% |
| ! | GGATTCCATTTCATTAAAAA+AGG | - | chr3.1:88735455-88735474 | None:intergenic | 25.0% |
| ! | GGTGAAAACAAGATTTATAA+AGG | - | chr3.1:88735119-88735138 | None:intergenic | 25.0% |
| ! | GTTGCAAGAAAATAATGAAT+TGG | + | chr3.1:88736139-88736158 | MS.gene23935:CDS | 25.0% |
| ! | TTGAACATCATAAACTTGAT+GGG | + | chr3.1:88734285-88734304 | MS.gene23935:CDS | 25.0% |
| !! | ATAATACCTTTAACTTTGAC+AGG | + | chr3.1:88736056-88736075 | MS.gene23935:intron | 25.0% |
| !!! | TGTGTTATACCTACTTTTTT+AGG | + | chr3.1:88734399-88734418 | MS.gene23935:intron | 25.0% |
| !!! | TTCCCTTTTTAATTAAGTGT+AGG | + | chr3.1:88735264-88735283 | MS.gene23935:intron | 25.0% |
| AAAAAAACAATCATCAAGGG+AGG | - | chr3.1:88734652-88734671 | None:intergenic | 30.0% | |
| AAAAAACAATCATCAAGGGA+GGG | - | chr3.1:88734651-88734670 | None:intergenic | 30.0% | |
| AAAAACACAATTGCCAAAGA+TGG | - | chr3.1:88735402-88735421 | None:intergenic | 30.0% | |
| AAAAATATGACTGAAAAGCG+CGG | - | chr3.1:88734067-88734086 | None:intergenic | 30.0% | |
| AAAAGTAGGTATAACACAAC+AGG | - | chr3.1:88734397-88734416 | None:intergenic | 30.0% | |
| AAGTTAAATGATGTACACAG+AGG | - | chr3.1:88735630-88735649 | None:intergenic | 30.0% | |
| AGATTTCATGTTGATATGTC+TGG | + | chr3.1:88735869-88735888 | MS.gene23935:CDS | 30.0% | |
| AGTTATGAAGGTGACATTTA+CGG | - | chr3.1:88734844-88734863 | None:intergenic | 30.0% | |
| ATAATGAAAAGCTGAAAGAG+AGG | + | chr3.1:88733970-88733989 | MS.gene23935:CDS | 30.0% | |
| ATATAGTTTATCCAAAGGGT+TGG | + | chr3.1:88736184-88736203 | MS.gene23935:CDS | 30.0% | |
| CAGTTCAACATTAGAACATA+GGG | - | chr3.1:88735713-88735732 | None:intergenic | 30.0% | |
| CCTCCTACACTTAATTAAAA+AGG | - | chr3.1:88735270-88735289 | None:intergenic | 30.0% | |
| CTTCATAAATTCTCGAAAAC+AGG | + | chr3.1:88735144-88735163 | MS.gene23935:intron | 30.0% | |
| GATAAGGATAAGAAGAGTAA+GGG | + | chr3.1:88733897-88733916 | MS.gene23935:CDS | 30.0% | |
| GATTTCATGTTGATATGTCT+GGG | + | chr3.1:88735870-88735889 | MS.gene23935:CDS | 30.0% | |
| GCGATTATTGAGAATTGATT+TGG | - | chr3.1:88733832-88733851 | None:intergenic | 30.0% | |
| TAATGAAAAGCTGAAAGAGA+GGG | + | chr3.1:88733971-88733990 | MS.gene23935:CDS | 30.0% | |
| TATCAGATAATACGAATTGC+AGG | - | chr3.1:88736039-88736058 | None:intergenic | 30.0% | |
| TCGAGAATTTATGAAGGAAA+AGG | - | chr3.1:88735140-88735159 | None:intergenic | 30.0% | |
| TGCTGAATTGTTGAGAAAAA+CGG | + | chr3.1:88734172-88734191 | MS.gene23935:CDS | 30.0% | |
| TTATTAGGTATGTTCCCTTT+CGG | + | chr3.1:88733717-88733736 | MS.gene23935:CDS | 30.0% | |
| TTCCACCAATTGTTCAATAA+AGG | - | chr3.1:88736088-88736107 | None:intergenic | 30.0% | |
| TTGGATGACACAATTCATAA+AGG | - | chr3.1:88735670-88735689 | None:intergenic | 30.0% | |
| TTTAATTAAGTGTAGGAGGA+AGG | + | chr3.1:88735271-88735290 | MS.gene23935:intron | 30.0% | |
| ! | TTCATTATTTTCTTGCAACC+CGG | - | chr3.1:88736138-88736157 | None:intergenic | 30.0% |
| ! | TTCTTCGTTGGGTTTTTATT+AGG | + | chr3.1:88733702-88733721 | MS.gene23935:CDS | 30.0% |
| !! | CCTTTTTAATTAAGTGTAGG+AGG | + | chr3.1:88735267-88735286 | MS.gene23935:intron | 30.0% |
| !! | CTGTTTTCGAGAATTTATGA+AGG | - | chr3.1:88735146-88735165 | None:intergenic | 30.0% |
| !! | TGTATGAATTTTATAACGGG+CGG | + | chr3.1:88734707-88734726 | MS.gene23935:intron | 30.0% |
| !!! | AACTGGTTTTATAGTCGTTT+TGG | + | chr3.1:88735728-88735747 | MS.gene23935:intron | 30.0% |
| !!! | ACTTTTTTCCCTTCCATTTT+CGG | - | chr3.1:88735236-88735255 | None:intergenic | 30.0% |
| !!! | AGTTATATTGCTTGTTTTGG+AGG | + | chr3.1:88734444-88734463 | MS.gene23935:intron | 30.0% |
| AAATGATGTACACAGAGGAT+GGG | - | chr3.1:88735625-88735644 | None:intergenic | 35.0% | |
| AATACGAATTGCAGGTGATA+TGG | - | chr3.1:88736031-88736050 | None:intergenic | 35.0% | |
| ACCAAAAGCCAACAAACAAA+AGG | - | chr3.1:88734504-88734523 | None:intergenic | 35.0% | |
| AGAAAATTGATATTGTGGCG+AGG | + | chr3.1:88734009-88734028 | MS.gene23935:CDS | 35.0% | |
| ATACGAATTGCAGGTGATAT+GGG | - | chr3.1:88736030-88736049 | None:intergenic | 35.0% | |
| CAACATTAGAACATAGGGTT+AGG | - | chr3.1:88735708-88735727 | None:intergenic | 35.0% | |
| CAATTAGACTCAGTGAAAGA+GGG | + | chr3.1:88735962-88735981 | MS.gene23935:CDS | 35.0% | |
| CACAAACTTCCATCTTCAAA+CGG | + | chr3.1:88733567-88733586 | MS.gene23935:CDS | 35.0% | |
| CACCAATTGTTCAATAAAGG+TGG | - | chr3.1:88736085-88736104 | None:intergenic | 35.0% | |
| CACCTTTATTGAACAATTGG+TGG | + | chr3.1:88736083-88736102 | MS.gene23935:CDS | 35.0% | |
| CATGAATGAGATTACCGAAA+GGG | - | chr3.1:88733734-88733753 | None:intergenic | 35.0% | |
| CCAGTTCAACATTAGAACAT+AGG | - | chr3.1:88735714-88735733 | None:intergenic | 35.0% | |
| CCTATGTTCTAATGTTGAAC+TGG | + | chr3.1:88735711-88735730 | MS.gene23935:intron | 35.0% | |
| CTTGTGAATACCCAAAAACA+AGG | - | chr3.1:88735032-88735051 | None:intergenic | 35.0% | |
| GACCACCTTTATTGAACAAT+TGG | + | chr3.1:88736080-88736099 | MS.gene23935:CDS | 35.0% | |
| GCTGAATTGTTGAGAAAAAC+GGG | + | chr3.1:88734173-88734192 | MS.gene23935:CDS | 35.0% | |
| GGAAATGAATTCTGCTTCTA+TGG | + | chr3.1:88734145-88734164 | MS.gene23935:CDS | 35.0% | |
| GGATAAGGATAAGAAGAGTA+AGG | + | chr3.1:88733896-88733915 | MS.gene23935:CDS | 35.0% | |
| GGTGTGTACTAAGAATTCAA+CGG | + | chr3.1:88734214-88734233 | MS.gene23935:CDS | 35.0% | |
| GTAGATACAACTCAGAAAAC+TGG | - | chr3.1:88735544-88735563 | None:intergenic | 35.0% | |
| TAAATGATGTACACAGAGGA+TGG | - | chr3.1:88735626-88735645 | None:intergenic | 35.0% | |
| TAAGAATTCAACGGATGTGA+AGG | + | chr3.1:88734223-88734242 | MS.gene23935:CDS | 35.0% | |
| TAGGAACTGAATGAACAAGT+TGG | - | chr3.1:88735689-88735708 | None:intergenic | 35.0% | |
| TCATCAGAGGAATAAAGCAT+TGG | + | chr3.1:88734256-88734275 | MS.gene23935:CDS | 35.0% | |
| TCATGAATGAGATTACCGAA+AGG | - | chr3.1:88733735-88733754 | None:intergenic | 35.0% | |
| TCGTCGTTTCAGAGATTAAT+CGG | + | chr3.1:88733609-88733628 | MS.gene23935:CDS | 35.0% | |
| TTCAGACAATCAGAGATATC+AGG | + | chr3.1:88734354-88734373 | MS.gene23935:CDS | 35.0% | |
| ! | AAGCAAGAACAAGGCTATTT+TGG | + | chr3.1:88735778-88735797 | MS.gene23935:CDS | 35.0% |
| ! | AATGACGTATTGACCGAAAA+TGG | + | chr3.1:88735220-88735239 | MS.gene23935:intron | 35.0% |
| ! | GTTTTCTGAGTTGTATCTAC+TGG | + | chr3.1:88735544-88735563 | MS.gene23935:intron | 35.0% |
| ! | TTGTTTTCACGATGTTGTTG+AGG | - | chr3.1:88733762-88733781 | None:intergenic | 35.0% |
| !! | AAAATAGCCTTGTTCTTGCT+TGG | - | chr3.1:88735779-88735798 | None:intergenic | 35.0% |
| !! | AAGAACAAGGCTATTTTGGA+GGG | + | chr3.1:88735782-88735801 | MS.gene23935:CDS | 35.0% |
| !! | ATCGTTTGCCTTTTGTTTGT+TGG | + | chr3.1:88734493-88734512 | MS.gene23935:intron | 35.0% |
| !! | ATTGATTTGGCATCAGATTG+TGG | - | chr3.1:88733819-88733838 | None:intergenic | 35.0% |
| !! | ATTTGGGAGTTTGGGTTTTT+GGG | + | chr3.1:88734619-88734638 | MS.gene23935:intron | 35.0% |
| !! | TTTATAGTCGTTTTGGCACT+TGG | + | chr3.1:88735735-88735754 | MS.gene23935:intron | 35.0% |
| !!! | GTATGAATTTTATAACGGGC+GGG | + | chr3.1:88734708-88734727 | MS.gene23935:intron | 35.0% |
| !!! | TATTGCTTGTTTTGGAGGTA+TGG | + | chr3.1:88734449-88734468 | MS.gene23935:intron | 35.0% |
| !!! | TTTTTTGAATAGGTTAGGGC+AGG | + | chr3.1:88734082-88734101 | MS.gene23935:CDS | 35.0% |
| AAGTTCGTGGGATTGTGATT+TGG | + | chr3.1:88734602-88734621 | MS.gene23935:intron | 40.0% | |
| ACACAATTGCCAAAGATGGT+TGG | - | chr3.1:88735398-88735417 | None:intergenic | 40.0% | |
| ACTGAGTCTAATTGCCGTAT+AGG | - | chr3.1:88735956-88735975 | None:intergenic | 40.0% | |
| AGTTCGTGGGATTGTGATTT+GGG | + | chr3.1:88734603-88734622 | MS.gene23935:intron | 40.0% | |
| ATGCGACGATACAATCGAAA+GGG | + | chr3.1:88733642-88733661 | MS.gene23935:CDS | 40.0% | |
| ATGTGTAGCATGTAAGTTCG+TGG | + | chr3.1:88734589-88734608 | MS.gene23935:intron | 40.0% | |
| ATTAAGTGTAGGAGGAAGGT+AGG | + | chr3.1:88735275-88735294 | MS.gene23935:intron | 40.0% | |
| ATTCAACAGCACAATCCTGT+GGG | + | chr3.1:88735898-88735917 | MS.gene23935:CDS | 40.0% | |
| CCGATACACTTGTAGTCTAA+CGG | + | chr3.1:88734733-88734752 | MS.gene23935:intron | 40.0% | |
| CCGTTAGACTACAAGTGTAT+CGG | - | chr3.1:88734736-88734755 | None:intergenic | 40.0% | |
| CTCAAGAACAACCAACTTGT+CGG | - | chr3.1:88734872-88734891 | None:intergenic | 40.0% | |
| GAAAAACGGGTGTGATGTAT+AGG | + | chr3.1:88734186-88734205 | MS.gene23935:CDS | 40.0% | |
| GAAGATGAGAGTCAAATGGA+AGG | + | chr3.1:88736105-88736124 | MS.gene23935:CDS | 40.0% | |
| GAAGATGGAAGTTTGTGAGA+TGG | - | chr3.1:88733564-88733583 | None:intergenic | 40.0% | |
| GAGTAGTTTCCGTTTGAAGA+TGG | - | chr3.1:88733579-88733598 | None:intergenic | 40.0% | |
| GATACAATCGAAAGGGACAA+TGG | + | chr3.1:88733649-88733668 | MS.gene23935:CDS | 40.0% | |
| GCAATTAGACTCAGTGAAAG+AGG | + | chr3.1:88735961-88735980 | MS.gene23935:CDS | 40.0% | |
| GCCCTACTTCAAATCCTATA+CGG | + | chr3.1:88735939-88735958 | MS.gene23935:CDS | 40.0% | |
| GCTTCAATGAAGGTTCATAG+TGG | + | chr3.1:88735331-88735350 | MS.gene23935:intron | 40.0% | |
| GGTTACAGTTATTGAGGCAT+TGG | + | chr3.1:88734795-88734814 | MS.gene23935:intron | 40.0% | |
| GTTAATGTGGCCGAAATTTG+CGG | + | chr3.1:88734896-88734915 | MS.gene23935:intron | 40.0% | |
| GTTCTTGAGAGGAGTTAATG+TGG | + | chr3.1:88734883-88734902 | MS.gene23935:intron | 40.0% | |
| TACACTTGTAGTCTAACGGT+TGG | + | chr3.1:88734737-88734756 | MS.gene23935:intron | 40.0% | |
| TACGAATTGCAGGTGATATG+GGG | - | chr3.1:88736029-88736048 | None:intergenic | 40.0% | |
| TCGTTTCAGAGATTAATCGG+TGG | + | chr3.1:88733612-88733631 | MS.gene23935:CDS | 40.0% | |
| TCTGCATTATCCAATGAGTC+TGG | + | chr3.1:88734771-88734790 | MS.gene23935:intron | 40.0% | |
| TGAACCTTCATTGAAGCATG+TGG | - | chr3.1:88735328-88735347 | None:intergenic | 40.0% | |
| TGGTCTCCTGTCAAAGTTAA+AGG | - | chr3.1:88736065-88736084 | None:intergenic | 40.0% | |
| TGTCTCAATGCAGTTGTAGT+TGG | + | chr3.1:88734540-88734559 | MS.gene23935:intron | 40.0% | |
| TGTGTAGCATGTAAGTTCGT+GGG | + | chr3.1:88734590-88734609 | MS.gene23935:intron | 40.0% | |
| TTGTCGGTAGCAAGTTATGA+AGG | - | chr3.1:88734856-88734875 | None:intergenic | 40.0% | |
| ! | AATGGCGAAAAGTTGCTTTC+AGG | + | chr3.1:88733667-88733686 | MS.gene23935:CDS | 40.0% |
| ! | ACGTATTGACCGAAAATGGA+AGG | + | chr3.1:88735224-88735243 | MS.gene23935:intron | 40.0% |
| ! | ATTATTTTCTTGCAACCCGG+TGG | - | chr3.1:88736135-88736154 | None:intergenic | 40.0% |
| ! | CGTATTGACCGAAAATGGAA+GGG | + | chr3.1:88735225-88735244 | MS.gene23935:intron | 40.0% |
| ! | GCCGTATAGGATTTGAAGTA+GGG | - | chr3.1:88735943-88735962 | None:intergenic | 40.0% |
| ! | GGATTGTGATTTGGGAGTTT+GGG | + | chr3.1:88734611-88734630 | MS.gene23935:intron | 40.0% |
| ! | TGAAAAGCGCGGTTATAAGT+CGG | - | chr3.1:88734056-88734075 | None:intergenic | 40.0% |
| ! | TGCCGTATAGGATTTGAAGT+AGG | - | chr3.1:88735944-88735963 | None:intergenic | 40.0% |
| !! | ACAAGTTGGTTGTTCTTGAG+AGG | + | chr3.1:88734872-88734891 | MS.gene23935:intron | 40.0% |
| !! | ATAACTTGCTACCGACAAGT+TGG | + | chr3.1:88734858-88734877 | MS.gene23935:intron | 40.0% |
| !! | CAAGAACAAGGCTATTTTGG+AGG | + | chr3.1:88735781-88735800 | MS.gene23935:CDS | 40.0% |
| !! | GATTTGGGAGTTTGGGTTTT+TGG | + | chr3.1:88734618-88734637 | MS.gene23935:intron | 40.0% |
| !! | TACAGTTATTGAGGCATTGG+TGG | + | chr3.1:88734798-88734817 | MS.gene23935:intron | 40.0% |
| !!! | AGTTGGTACTGTTGGCTTTT+AGG | + | chr3.1:88734557-88734576 | MS.gene23935:intron | 40.0% |
| !!! | GACTAATGCGCCTTGTTTTT+GGG | + | chr3.1:88735019-88735038 | MS.gene23935:intron | 40.0% |
| !!! | GCCTTTTGTTTGTTGGCTTT+TGG | + | chr3.1:88734500-88734519 | MS.gene23935:intron | 40.0% |
| !!! | GTTGGTACTGTTGGCTTTTA+GGG | + | chr3.1:88734558-88734577 | MS.gene23935:intron | 40.0% |
| !!! | TGACTAATGCGCCTTGTTTT+TGG | + | chr3.1:88735018-88735037 | MS.gene23935:intron | 40.0% |
| ACGAATTGCAGGTGATATGG+GGG | - | chr3.1:88736028-88736047 | None:intergenic | 45.0% | |
| ACTTGGCTTCCATTGCATAC+CGG | - | chr3.1:88735809-88735828 | None:intergenic | 45.0% | |
| AGGATAGAGGAGTTCATCAG+AGG | + | chr3.1:88734243-88734262 | MS.gene23935:CDS | 45.0% | |
| AGTTTGTGAGATGGAGACGA+CGG | - | chr3.1:88733555-88733574 | None:intergenic | 45.0% | |
| CACGACCGTCACTACATAAA+CGG | + | chr3.1:88733510-88733529 | MS.gene23935:CDS | 45.0% | |
| CATGCGACGATACAATCGAA+AGG | + | chr3.1:88733641-88733660 | MS.gene23935:CDS | 45.0% | |
| CATTCAACAGCACAATCCTG+TGG | + | chr3.1:88735897-88735916 | MS.gene23935:CDS | 45.0% | |
| CCCCAAAGAACCGCAAATTT+CGG | - | chr3.1:88734909-88734928 | None:intergenic | 45.0% | |
| CCGAAATTTGCGGTTCTTTG+GGG | + | chr3.1:88734906-88734925 | MS.gene23935:intron | 45.0% | |
| CGAAATTTGCGGTTCTTTGG+GGG | + | chr3.1:88734907-88734926 | MS.gene23935:intron | 45.0% | |
| CTCAAACATGAACGCTGAGA+AGG | + | chr3.1:88733947-88733966 | MS.gene23935:CDS | 45.0% | |
| GCATTATCCAATGAGTCTGG+CGG | + | chr3.1:88734774-88734793 | MS.gene23935:intron | 45.0% | |
| GCCGAAATTTGCGGTTCTTT+GGG | + | chr3.1:88734905-88734924 | MS.gene23935:intron | 45.0% | |
| GGGTATTCACAAGCTTGTCT+GGG | + | chr3.1:88735039-88735058 | MS.gene23935:intron | 45.0% | |
| GGGTGTGATGTATAGGCATT+TGG | + | chr3.1:88734193-88734212 | MS.gene23935:CDS | 45.0% | |
| GGTGGAAGATGAGAGTCAAA+TGG | + | chr3.1:88736101-88736120 | MS.gene23935:CDS | 45.0% | |
| TCAACGGATGTGAAGGATAG+AGG | + | chr3.1:88734230-88734249 | MS.gene23935:CDS | 45.0% | |
| TCTGGCGGTTACAGTTATTG+AGG | + | chr3.1:88734789-88734808 | MS.gene23935:intron | 45.0% | |
| TGGGTATTCACAAGCTTGTC+TGG | + | chr3.1:88735038-88735057 | MS.gene23935:intron | 45.0% | |
| TTCTCAAGCATCCAACCCTT+TGG | - | chr3.1:88736198-88736217 | None:intergenic | 45.0% | |
| ! | ATAGGTTAGGGCAGGTTTTG+AGG | + | chr3.1:88734090-88734109 | MS.gene23935:CDS | 45.0% |
| ! | CTCAGTGAAAGAGGGTTTTC+AGG | + | chr3.1:88735970-88735989 | MS.gene23935:CDS | 45.0% |
| ! | GCAGTTGTAGTTGGTACTGT+TGG | + | chr3.1:88734549-88734568 | MS.gene23935:intron | 45.0% |
| ! | GCGTTCTCTGTTTCTTCGTT+GGG | + | chr3.1:88733691-88733710 | MS.gene23935:CDS | 45.0% |
| ! | GGGATTGTGATTTGGGAGTT+TGG | + | chr3.1:88734610-88734629 | MS.gene23935:intron | 45.0% |
| ! | GGTTCTTTGGGGGATCAATT+CGG | + | chr3.1:88734917-88734936 | MS.gene23935:intron | 45.0% |
| ! | GTTCTTTGGGGGATCAATTC+GGG | + | chr3.1:88734918-88734937 | MS.gene23935:intron | 45.0% |
| ! | TCGGGGTTTTTACATACGCA+AGG | + | chr3.1:88734936-88734955 | MS.gene23935:intron | 45.0% |
| ! | TGCGTTCTCTGTTTCTTCGT+TGG | + | chr3.1:88733690-88733709 | MS.gene23935:CDS | 45.0% |
| ! | TGGTGGTGATGATGAGGATA+AGG | + | chr3.1:88733881-88733900 | MS.gene23935:CDS | 45.0% |
| ! | TTCTTTGGGGGATCAATTCG+GGG | + | chr3.1:88734919-88734938 | MS.gene23935:intron | 45.0% |
| ! | TTGAAAAAGCACGTCAGCGT+CGG | + | chr3.1:88733855-88733874 | MS.gene23935:CDS | 45.0% |
| AATTGCAGGTGATATGGGGG+TGG | - | chr3.1:88736025-88736044 | None:intergenic | 50.0% | |
| ACGGCGCACAAGTGTTTAAC+TGG | - | chr3.1:88734825-88734844 | None:intergenic | 50.0% | |
| ACTGTAACCGCCAGACTCAT+TGG | - | chr3.1:88734784-88734803 | None:intergenic | 50.0% | |
| AGATGGAGACGACGGTGAAA+AGG | - | chr3.1:88733547-88733566 | None:intergenic | 50.0% | |
| ATTCCGACGGACGTTATCTC+CGG | + | chr3.1:88733482-88733501 | MS.gene23935:CDS | 50.0% | |
| CAATCCTGTGGGATCCAAAG+CGG | + | chr3.1:88735909-88735928 | MS.gene23935:CDS | 50.0% | |
| CACCGCCGTTTATGTAGTGA+CGG | - | chr3.1:88733518-88733537 | None:intergenic | 50.0% | |
| CAGGCCACATGCTTCAATGA+AGG | + | chr3.1:88735321-88735340 | MS.gene23935:intron | 50.0% | |
| CCTACTGAGCCAACCATCTT+TGG | + | chr3.1:88735386-88735405 | MS.gene23935:intron | 50.0% | |
| GACCGTCACTACATAAACGG+CGG | + | chr3.1:88733513-88733532 | MS.gene23935:CDS | 50.0% | |
| GCAATGGAAGCCAAGTGCTT+GGG | + | chr3.1:88735813-88735832 | MS.gene23935:CDS | 50.0% | |
| GCTTGCACCAAGCAAGAACA+AGG | + | chr3.1:88735769-88735788 | MS.gene23935:CDS | 50.0% | |
| GGCCGAAATTTGCGGTTCTT+TGG | + | chr3.1:88734904-88734923 | MS.gene23935:intron | 50.0% | |
| TAGTGACGGTCGTGATATGC+CGG | - | chr3.1:88733504-88733523 | None:intergenic | 50.0% | |
| TCAAATGGAAGGTTCGCCAC+CGG | + | chr3.1:88736116-88736135 | MS.gene23935:CDS | 50.0% | |
| TCCACCACCACCCATAAAAG+CGG | - | chr3.1:88734128-88734147 | None:intergenic | 50.0% | |
| TGACGTGGATGACAGCATCT+AGG | - | chr3.1:88736224-88736243 | None:intergenic | 50.0% | |
| TGCAATGGAAGCCAAGTGCT+TGG | + | chr3.1:88735812-88735831 | MS.gene23935:CDS | 50.0% | |
| TTGTATGCCACCCAAGCACT+TGG | - | chr3.1:88735826-88735845 | None:intergenic | 50.0% | |
| ! | CCAAAGATGGTTGGCTCAGT+AGG | - | chr3.1:88735389-88735408 | None:intergenic | 50.0% |
| !! | CAAGGCTATTTTGGAGGGTC+CGG | + | chr3.1:88735787-88735806 | MS.gene23935:CDS | 50.0% |
| !! | GTTCTTGCTTGGTGCAAGCA+TGG | - | chr3.1:88735768-88735787 | None:intergenic | 50.0% |
| !!! | GTTAGGGCAGGTTTTGAGGT+TGG | + | chr3.1:88734094-88734113 | MS.gene23935:CDS | 50.0% |
| ACCACCACCCATAAAAGCGG+CGG | - | chr3.1:88734125-88734144 | None:intergenic | 55.0% | |
| ATGCCGGAGATAACGTCCGT+CGG | - | chr3.1:88733488-88733507 | None:intergenic | 55.0% | |
| ATGGAAGCCAAGTGCTTGGG+TGG | + | chr3.1:88735816-88735835 | MS.gene23935:CDS | 55.0% | |
| ATGTGGCCTGTCTCGACCAT+GGG | - | chr3.1:88735311-88735330 | None:intergenic | 55.0% | |
| CAAATGGAAGGTTCGCCACC+GGG | + | chr3.1:88736117-88736136 | MS.gene23935:CDS | 55.0% | |
| CGTCACTACATAAACGGCGG+TGG | + | chr3.1:88733516-88733535 | MS.gene23935:CDS | 55.0% | |
| TGGAGACGACGGTGAAAAGG+CGG | - | chr3.1:88733544-88733563 | None:intergenic | 55.0% | |
| TTGGAGGGTCCGGTATGCAA+TGG | + | chr3.1:88735797-88735816 | MS.gene23935:CDS | 55.0% | |
| ! | AAAAAGCACGTCAGCGTCGG+TGG | + | chr3.1:88733858-88733877 | MS.gene23935:CDS | 55.0% |
| ACCACCCATAAAAGCGGCGG+CGG | - | chr3.1:88734122-88734141 | None:intergenic | 60.0% | |
| CATGTGGCCTGTCTCGACCA+TGG | - | chr3.1:88735312-88735331 | None:intergenic | 60.0% | |
| CCTGTCTCGACCATGGGAGT+GGG | - | chr3.1:88735305-88735324 | None:intergenic | 60.0% | |
| TCCTGTGGGATCCAAAGCGG+TGG | + | chr3.1:88735912-88735931 | MS.gene23935:CDS | 60.0% | |
| TGTGGGATCCAAAGCGGTGG+CGG | + | chr3.1:88735915-88735934 | MS.gene23935:CDS | 60.0% | |
| ! | CTTGGTGCAAGCATGGCGAC+AGG | - | chr3.1:88735761-88735780 | None:intergenic | 60.0% |
| ! | GGTAGGTTGACCCACTCCCA+TGG | + | chr3.1:88735292-88735311 | MS.gene23935:intron | 60.0% |
| !! | CGGTGGTGGTGGTGATGATG+AGG | + | chr3.1:88733875-88733894 | MS.gene23935:CDS | 60.0% |
| !!! | GCCGCTTTTATGGGTGGTGG+TGG | + | chr3.1:88734124-88734143 | MS.gene23935:CDS | 60.0% |
| CCCACTCCCATGGTCGAGAC+AGG | + | chr3.1:88735302-88735321 | MS.gene23935:intron | 65.0% | |
| GCCTGTCTCGACCATGGGAG+TGG | - | chr3.1:88735306-88735325 | None:intergenic | 65.0% | |
| ! | GCCACCGCTTTGGATCCCAC+AGG | - | chr3.1:88735916-88735935 | None:intergenic | 65.0% |
| !! | AAGCACGTCAGCGTCGGTGG+TGG | + | chr3.1:88733861-88733880 | MS.gene23935:CDS | 65.0% |
| !!! | GCCGCCGCTTTTATGGGTGG+TGG | + | chr3.1:88734121-88734140 | MS.gene23935:CDS | 65.0% |
| !!! | GGTGCCGCCGCCGCTTTTAT+GGG | + | chr3.1:88734115-88734134 | MS.gene23935:CDS | 65.0% |
| !!! | TGGTGCCGCCGCCGCTTTTA+TGG | + | chr3.1:88734114-88734133 | MS.gene23935:CDS | 65.0% |
| !! | CACGTCAGCGTCGGTGGTGG+TGG | + | chr3.1:88733864-88733883 | MS.gene23935:CDS | 70.0% |
| !!! | GCCGCCGCCGCTTTTATGGG+TGG | + | chr3.1:88734118-88734137 | MS.gene23935:CDS | 70.0% |
| !! | GTAGGGCGCCGCCACCGCTT+TGG | - | chr3.1:88735926-88735945 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 88733474 | 88736248 | 88733474 | ID=MS.gene23935 |
| chr3.1 | mRNA | 88733474 | 88736248 | 88733474 | ID=MS.gene23935.t1;Parent=MS.gene23935 |
| chr3.1 | exon | 88733474 | 88734375 | 88733474 | ID=MS.gene23935.t1.exon1;Parent=MS.gene23935.t1 |
| chr3.1 | CDS | 88733474 | 88734375 | 88733474 | ID=cds.MS.gene23935.t1;Parent=MS.gene23935.t1 |
| chr3.1 | exon | 88735742 | 88735991 | 88735742 | ID=MS.gene23935.t1.exon2;Parent=MS.gene23935.t1 |
| chr3.1 | CDS | 88735742 | 88735991 | 88735742 | ID=cds.MS.gene23935.t1;Parent=MS.gene23935.t1 |
| chr3.1 | exon | 88736078 | 88736248 | 88736078 | ID=MS.gene23935.t1.exon3;Parent=MS.gene23935.t1 |
| chr3.1 | CDS | 88736078 | 88736248 | 88736078 | ID=cds.MS.gene23935.t1;Parent=MS.gene23935.t1 |
| Gene Sequence |
| Protein sequence |
