Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26974.t1 | KEH40159.1 | 95 | 280 | 11 | 1 | 1 | 280 | 90 | 366 | 3.10E-144 | 521.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26974.t1 | Q8LEZ4 | 56.6 | 279 | 100 | 5 | 1 | 274 | 108 | 370 | 3.0e-76 | 286.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26974.t1 | A0A072VDQ7 | 95.0 | 280 | 11 | 1 | 1 | 280 | 90 | 366 | 2.2e-144 | 521.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene26974 | 0.802979 | 4.34E-49 | -1.69E-46 |
| MS.gene049178 | MS.gene26974 | 0.815595 | 8.53E-52 | -1.69E-46 |
| MS.gene049208 | MS.gene26974 | 0.817055 | 4.02E-52 | -1.69E-46 |
| MS.gene049382 | MS.gene26974 | 0.823359 | 1.44E-53 | -1.69E-46 |
| MS.gene049756 | MS.gene26974 | 0.800138 | 1.66E-48 | -1.69E-46 |
| MS.gene04984 | MS.gene26974 | 0.801005 | 1.10E-48 | -1.69E-46 |
| MS.gene049887 | MS.gene26974 | 0.868458 | 6.43E-66 | -1.69E-46 |
| MS.gene050084 | MS.gene26974 | 0.808568 | 2.91E-50 | -1.69E-46 |
| MS.gene050085 | MS.gene26974 | 0.836478 | 9.14E-57 | -1.69E-46 |
| MS.gene050114 | MS.gene26974 | 0.814298 | 1.65E-51 | -1.69E-46 |
| MS.gene050277 | MS.gene26974 | 0.813354 | 2.67E-51 | -1.69E-46 |
| MS.gene050317 | MS.gene26974 | 0.803704 | 3.07E-49 | -1.69E-46 |
| MS.gene050551 | MS.gene26974 | 0.829104 | 6.20E-55 | -1.69E-46 |
| MS.gene050689 | MS.gene26974 | 0.847037 | 1.49E-59 | -1.69E-46 |
| MS.gene050762 | MS.gene26974 | 0.806836 | 6.78E-50 | -1.69E-46 |
| MS.gene050763 | MS.gene26974 | 0.805006 | 1.64E-49 | -1.69E-46 |
| MS.gene050807 | MS.gene26974 | 0.816956 | 4.23E-52 | -1.69E-46 |
| MS.gene050838 | MS.gene26974 | 0.876971 | 9.13E-69 | -1.69E-46 |
| MS.gene051003 | MS.gene26974 | 0.803422 | 3.51E-49 | -1.69E-46 |
| MS.gene051063 | MS.gene26974 | 0.802089 | 6.62E-49 | -1.69E-46 |
| MS.gene051102 | MS.gene26974 | 0.871827 | 5.08E-67 | -1.69E-46 |
| MS.gene051233 | MS.gene26974 | 0.81066 | 1.03E-50 | -1.69E-46 |
| MS.gene051234 | MS.gene26974 | 0.800667 | 1.29E-48 | -1.69E-46 |
| MS.gene051245 | MS.gene26974 | 0.808788 | 2.61E-50 | -1.69E-46 |
| MS.gene051328 | MS.gene26974 | 0.822171 | 2.73E-53 | -1.69E-46 |
| MS.gene051343 | MS.gene26974 | 0.814419 | 1.56E-51 | -1.69E-46 |
| MS.gene051381 | MS.gene26974 | 0.838381 | 2.97E-57 | -1.69E-46 |
| MS.gene051382 | MS.gene26974 | 0.80623 | 9.10E-50 | -1.69E-46 |
| MS.gene051642 | MS.gene26974 | 0.807853 | 4.13E-50 | -1.69E-46 |
| MS.gene051746 | MS.gene26974 | 0.801719 | 7.88E-49 | -1.69E-46 |
| MS.gene051748 | MS.gene26974 | 0.827064 | 1.92E-54 | -1.69E-46 |
| MS.gene051850 | MS.gene26974 | 0.830832 | 2.35E-55 | -1.69E-46 |
| MS.gene052133 | MS.gene26974 | 0.818437 | 1.96E-52 | -1.69E-46 |
| MS.gene052242 | MS.gene26974 | -0.8049 | 1.73E-49 | -1.69E-46 |
| MS.gene052307 | MS.gene26974 | 0.808816 | 2.57E-50 | -1.69E-46 |
| MS.gene052335 | MS.gene26974 | 0.829556 | 4.82E-55 | -1.69E-46 |
| MS.gene052342 | MS.gene26974 | 0.806622 | 7.52E-50 | -1.69E-46 |
| MS.gene052397 | MS.gene26974 | 0.871417 | 6.95E-67 | -1.69E-46 |
| MS.gene052434 | MS.gene26974 | 0.820693 | 5.99E-53 | -1.69E-46 |
| MS.gene052516 | MS.gene26974 | 0.819833 | 9.44E-53 | -1.69E-46 |
| MS.gene052609 | MS.gene26974 | 0.841438 | 4.75E-58 | -1.69E-46 |
| MS.gene052665 | MS.gene26974 | 0.829839 | 4.11E-55 | -1.69E-46 |
| MS.gene052856 | MS.gene26974 | 0.817046 | 4.04E-52 | -1.69E-46 |
| MS.gene052947 | MS.gene26974 | 0.807899 | 4.03E-50 | -1.69E-46 |
| MS.gene053058 | MS.gene26974 | 0.860505 | 1.97E-63 | -1.69E-46 |
| MS.gene053109 | MS.gene26974 | 0.821521 | 3.86E-53 | -1.69E-46 |
| MS.gene053143 | MS.gene26974 | 0.822157 | 2.75E-53 | -1.69E-46 |
| MS.gene053167 | MS.gene26974 | 0.82048 | 6.71E-53 | -1.69E-46 |
| MS.gene053581 | MS.gene26974 | 0.814602 | 1.42E-51 | -1.69E-46 |
| MS.gene053952 | MS.gene26974 | 0.824566 | 7.53E-54 | -1.69E-46 |
| MS.gene05462 | MS.gene26974 | 0.809348 | 1.98E-50 | -1.69E-46 |
| MS.gene054823 | MS.gene26974 | 0.809286 | 2.04E-50 | -1.69E-46 |
| MS.gene054824 | MS.gene26974 | 0.801233 | 9.92E-49 | -1.69E-46 |
| MS.gene055311 | MS.gene26974 | 0.846306 | 2.36E-59 | -1.69E-46 |
| MS.gene055313 | MS.gene26974 | 0.828358 | 9.40E-55 | -1.69E-46 |
| MS.gene055314 | MS.gene26974 | 0.830034 | 3.69E-55 | -1.69E-46 |
| MS.gene055424 | MS.gene26974 | 0.80492 | 1.71E-49 | -1.69E-46 |
| MS.gene055441 | MS.gene26974 | 0.801036 | 1.09E-48 | -1.69E-46 |
| MS.gene055465 | MS.gene26974 | 0.806028 | 1.00E-49 | -1.69E-46 |
| MS.gene055468 | MS.gene26974 | 0.806413 | 8.33E-50 | -1.69E-46 |
| MS.gene055469 | MS.gene26974 | 0.861093 | 1.31E-63 | -1.69E-46 |
| MS.gene055512 | MS.gene26974 | 0.820785 | 5.71E-53 | -1.69E-46 |
| MS.gene055513 | MS.gene26974 | 0.829669 | 4.52E-55 | -1.69E-46 |
| MS.gene055580 | MS.gene26974 | -0.805544 | 1.27E-49 | -1.69E-46 |
| MS.gene056043 | MS.gene26974 | -0.825121 | 5.57E-54 | -1.69E-46 |
| MS.gene056097 | MS.gene26974 | 0.8152 | 1.04E-51 | -1.69E-46 |
| MS.gene056181 | MS.gene26974 | 0.856834 | 2.46E-62 | -1.69E-46 |
| MS.gene056308 | MS.gene26974 | 0.800778 | 1.23E-48 | -1.69E-46 |
| MS.gene056432 | MS.gene26974 | 0.849475 | 3.16E-60 | -1.69E-46 |
| MS.gene056507 | MS.gene26974 | 0.809402 | 1.93E-50 | -1.69E-46 |
| MS.gene056580 | MS.gene26974 | 0.806858 | 6.71E-50 | -1.69E-46 |
| MS.gene056760 | MS.gene26974 | 0.82031 | 7.34E-53 | -1.69E-46 |
| MS.gene056787 | MS.gene26974 | 0.824875 | 6.37E-54 | -1.69E-46 |
| MS.gene057057 | MS.gene26974 | 0.84609 | 2.70E-59 | -1.69E-46 |
| MS.gene057094 | MS.gene26974 | 0.831305 | 1.80E-55 | -1.69E-46 |
| MS.gene057140 | MS.gene26974 | 0.80203 | 6.81E-49 | -1.69E-46 |
| MS.gene057234 | MS.gene26974 | 0.808077 | 3.70E-50 | -1.69E-46 |
| MS.gene057360 | MS.gene26974 | 0.825235 | 5.23E-54 | -1.69E-46 |
| MS.gene057446 | MS.gene26974 | 0.804108 | 2.53E-49 | -1.69E-46 |
| MS.gene05781 | MS.gene26974 | 0.80269 | 4.98E-49 | -1.69E-46 |
| MS.gene058054 | MS.gene26974 | 0.813151 | 2.96E-51 | -1.69E-46 |
| MS.gene058055 | MS.gene26974 | 0.819692 | 1.02E-52 | -1.69E-46 |
| MS.gene05809 | MS.gene26974 | 0.811798 | 5.85E-51 | -1.69E-46 |
| MS.gene058638 | MS.gene26974 | 0.851154 | 1.07E-60 | -1.69E-46 |
| MS.gene058639 | MS.gene26974 | 0.854967 | 8.65E-62 | -1.69E-46 |
| MS.gene058646 | MS.gene26974 | 0.816302 | 5.93E-52 | -1.69E-46 |
| MS.gene058654 | MS.gene26974 | 0.813451 | 2.54E-51 | -1.69E-46 |
| MS.gene058758 | MS.gene26974 | 0.85041 | 1.73E-60 | -1.69E-46 |
| MS.gene05880 | MS.gene26974 | 0.804627 | 1.97E-49 | -1.69E-46 |
| MS.gene058906 | MS.gene26974 | 0.840642 | 7.69E-58 | -1.69E-46 |
| MS.gene059007 | MS.gene26974 | 0.809014 | 2.33E-50 | -1.69E-46 |
| MS.gene059171 | MS.gene26974 | 0.862829 | 3.84E-64 | -1.69E-46 |
| MS.gene059713 | MS.gene26974 | 0.816395 | 5.65E-52 | -1.69E-46 |
| MS.gene059725 | MS.gene26974 | 0.816278 | 6.01E-52 | -1.69E-46 |
| MS.gene05978 | MS.gene26974 | 0.831347 | 1.76E-55 | -1.69E-46 |
| MS.gene059965 | MS.gene26974 | 0.801986 | 6.95E-49 | -1.69E-46 |
| MS.gene06001 | MS.gene26974 | 0.837085 | 6.40E-57 | -1.69E-46 |
| MS.gene060296 | MS.gene26974 | 0.813706 | 2.24E-51 | -1.69E-46 |
| MS.gene060563 | MS.gene26974 | 0.817972 | 2.50E-52 | -1.69E-46 |
| MS.gene060637 | MS.gene26974 | 0.813182 | 2.91E-51 | -1.69E-46 |
| MS.gene060763 | MS.gene26974 | 0.802147 | 6.44E-49 | -1.69E-46 |
| MS.gene060869 | MS.gene26974 | 0.818422 | 1.98E-52 | -1.69E-46 |
| MS.gene060870 | MS.gene26974 | 0.822261 | 2.60E-53 | -1.69E-46 |
| MS.gene061006 | MS.gene26974 | 0.867624 | 1.19E-65 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26974.t1 | MTR_1g022355 | 95.000 | 280 | 11 | 1 | 1 | 280 | 90 | 366 | 0.0 | 533 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26974.t1 | AT1G19520 | 55.755 | 278 | 104 | 4 | 1 | 274 | 108 | 370 | 1.78e-87 | 265 |
| MS.gene26974.t1 | AT1G19520 | 56.429 | 280 | 101 | 5 | 1 | 275 | 108 | 371 | 2.35e-84 | 267 |
Find 74 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATTAAGTTCAAGATTTA+TGG | 0.133676 | 1.3:-2624102 | MS.gene26974:CDS |
| TCAGCCACTTGTTCCCATTT+AGG | 0.207802 | 1.3:+2624063 | None:intergenic |
| TTGATCTATCGGATCCTAAA+TGG | 0.216797 | 1.3:-2624077 | MS.gene26974:CDS |
| ATGAGGCGGGAGAAGTTATT+TGG | 0.238365 | 1.3:-2624032 | MS.gene26974:CDS |
| TTAGAGAGCTTAGGTTTAAA+TGG | 0.238681 | 1.3:-2624308 | MS.gene26974:CDS |
| GGAGGTTAGTAATAAGGTTT+TGG | 0.281718 | 1.3:-2624442 | MS.gene26974:CDS |
| TGTTTGCATTTCCCGGTTAT+CGG | 0.314823 | 1.3:+2623994 | None:intergenic |
| GGTAACTTGTTTGCATTTCC+CGG | 0.333463 | 1.3:+2623987 | None:intergenic |
| GAATTATCCTTTATACTTCA+AGG | 0.334354 | 1.3:-2623836 | MS.gene26974:CDS |
| AAGGAGGCGAAGCCGATAAC+CGG | 0.340946 | 1.3:-2624006 | MS.gene26974:CDS |
| TGTGTGGGAGGTTAGTAATA+AGG | 0.359950 | 1.3:-2624448 | MS.gene26974:CDS |
| TAGAGCTTCTACAGCCTACT+AGG | 0.360591 | 1.3:-2623897 | MS.gene26974:CDS |
| TGAAAGGGTTGTTTCAGAAA+TGG | 0.373951 | 1.3:-2624559 | MS.gene26974:CDS |
| TAAATGGGCACGTGAGAAAA+TGG | 0.380143 | 1.3:-2624292 | MS.gene26974:CDS |
| TGCATCTTCGCGATTTGATT+CGG | 0.380839 | 1.3:-2624499 | MS.gene26974:CDS |
| ATGGAAAAGGGTAGTGGTAG+TGG | 0.392895 | 1.3:-2624540 | MS.gene26974:CDS |
| ACAGTTACCTTGAAGTATAA+AGG | 0.399658 | 1.3:+2623829 | None:intergenic |
| TGTAGATTTGCTGGTGAAGT+TGG | 0.408581 | 1.3:-2624348 | MS.gene26974:CDS |
| GATGCTGGTGTTCGTGTTGA+TGG | 0.410669 | 1.3:-2624171 | MS.gene26974:CDS |
| AAATTAAGTTCAAGATTTAT+GGG | 0.422169 | 1.3:-2624101 | MS.gene26974:CDS |
| CGAGAAAATTCTGTCGTTGA+AGG | 0.433246 | 1.3:-2623965 | MS.gene26974:CDS |
| AAAGAGATGTGTAGATTTGC+TGG | 0.447104 | 1.3:-2624357 | MS.gene26974:CDS |
| GGTTGTTTCAGAAATGGAAA+AGG | 0.448209 | 1.3:-2624553 | MS.gene26974:CDS |
| GTTGACCCTGGTAGCTGAAT+GGG | 0.449689 | 1.3:-2623920 | MS.gene26974:CDS |
| ATGAGGATTTGGAGAAAATG+AGG | 0.450985 | 1.3:-2624254 | MS.gene26974:CDS |
| TAGAGAGCTTAGGTTTAAAT+GGG | 0.451572 | 1.3:-2624307 | MS.gene26974:CDS |
| TGATCTATCGGATCCTAAAT+GGG | 0.452985 | 1.3:-2624076 | MS.gene26974:CDS |
| GATTTATGGGCTTGATCTAT+CGG | 0.456068 | 1.3:-2624088 | MS.gene26974:CDS |
| TGGAAAAGGGTAGTGGTAGT+GGG | 0.463563 | 1.3:-2624539 | MS.gene26974:CDS |
| GTTGAGGAGAAGAAGGTTGT+TGG | 0.471339 | 1.3:-2624144 | MS.gene26974:CDS |
| TTGATCCAATCCACCCTAGT+AGG | 0.474961 | 1.3:+2623883 | None:intergenic |
| GCTCTACCCATTCAGCTACC+AGG | 0.475118 | 1.3:+2623914 | None:intergenic |
| TTGGTCTTCCTAAGAGGAAA+GGG | 0.483400 | 1.3:-2624125 | MS.gene26974:CDS |
| GCTGGTGAAGTTGGGATTCG+AGG | 0.483854 | 1.3:-2624339 | MS.gene26974:CDS |
| GTTGTTTCAGAAATGGAAAA+GGG | 0.487089 | 1.3:-2624552 | MS.gene26974:CDS |
| TGCTGCTTGTTATTGTTGAA+AGG | 0.487258 | 1.3:-2624575 | MS.gene26974:CDS |
| GAAAATGTTGTTGTTGATGC+TGG | 0.487848 | 1.3:-2624186 | MS.gene26974:CDS |
| AGGAAGAAGGAGAAAATGAA+AGG | 0.488535 | 1.3:-2624402 | MS.gene26974:CDS |
| AACAAGCAGCATTGCATCTA+CGG | 0.491489 | 1.3:+2624587 | None:intergenic |
| ATTGGATCAATTTGCTTGAA+AGG | 0.495330 | 1.3:-2623870 | MS.gene26974:CDS |
| TACAGCCTACTAGGGTGGAT+TGG | 0.497105 | 1.3:-2623888 | MS.gene26974:CDS |
| GTTATCGGCTTCGCCTCCTT+CGG | 0.498408 | 1.3:+2624009 | None:intergenic |
| GTAGATTTGCTGGTGAAGTT+GGG | 0.499570 | 1.3:-2624347 | MS.gene26974:CDS |
| GCGATTTGCTTAGAGAGCTT+AGG | 0.500284 | 1.3:-2624317 | MS.gene26974:CDS |
| TGTTGACCCTGGTAGCTGAA+TGG | 0.506521 | 1.3:-2623921 | MS.gene26974:CDS |
| GCTGCTTGTTATTGTTGAAA+GGG | 0.513685 | 1.3:-2624574 | MS.gene26974:CDS |
| GGAAGAAGGAGAAAATGAAA+GGG | 0.516139 | 1.3:-2624401 | MS.gene26974:CDS |
| TATGAATAAAGAGAGGAAGA+AGG | 0.517752 | 1.3:-2624415 | MS.gene26974:CDS |
| GGAAAAGGGTAGTGGTAGTG+GGG | 0.518104 | 1.3:-2624538 | MS.gene26974:CDS |
| AGGTTGTTGGTCTTCCTAAG+AGG | 0.522381 | 1.3:-2624131 | MS.gene26974:CDS |
| GAAAAGGGTAGTGGTAGTGG+GGG | 0.524024 | 1.3:-2624537 | MS.gene26974:CDS |
| TGGTAATGTTGAGGAGAAGA+AGG | 0.529708 | 1.3:-2624151 | MS.gene26974:CDS |
| AATTCTGTCGTTGAAGGAGA+AGG | 0.546483 | 1.3:-2623959 | MS.gene26974:CDS |
| GTTGGTCTTCCTAAGAGGAA+AGG | 0.559694 | 1.3:-2624126 | MS.gene26974:CDS |
| TCAGAAATGGAAAAGGGTAG+TGG | 0.562055 | 1.3:-2624546 | MS.gene26974:CDS |
| AGGAGGCGAAGCCGATAACC+GGG | 0.567405 | 1.3:-2624005 | MS.gene26974:CDS |
| AGAAGTTATTTGGCCGAAGG+AGG | 0.576981 | 1.3:-2624022 | MS.gene26974:CDS |
| GGCTGATAAGATTCATGAGG+CGG | 0.580784 | 1.3:-2624046 | MS.gene26974:CDS |
| GGGAGAAGTTATTTGGCCGA+AGG | 0.586632 | 1.3:-2624025 | MS.gene26974:CDS |
| GCTGATAAGATTCATGAGGC+GGG | 0.589093 | 1.3:-2624045 | MS.gene26974:CDS |
| TTTATGGAGGACTGTGTGGG+AGG | 0.601402 | 1.3:-2624460 | MS.gene26974:CDS |
| ATCTTCGCGATTTGATTCGG+TGG | 0.603612 | 1.3:-2624496 | MS.gene26974:CDS |
| AGGATTTATGGAGGACTGTG+TGG | 0.605077 | 1.3:-2624464 | MS.gene26974:CDS |
| CTGTCGTTGAAGGAGAAGGA+TGG | 0.608593 | 1.3:-2623955 | MS.gene26974:CDS |
| GGATCCTAAATGGGAACAAG+TGG | 0.618929 | 1.3:-2624067 | MS.gene26974:CDS |
| CTCTACCCATTCAGCTACCA+GGG | 0.620249 | 1.3:+2623915 | None:intergenic |
| GCTTCTACAGCCTACTAGGG+TGG | 0.622270 | 1.3:-2623893 | MS.gene26974:CDS |
| TCGTGTTGATGGTAATGTTG+AGG | 0.627189 | 1.3:-2624160 | MS.gene26974:CDS |
| AGAGCTTCTACAGCCTACTA+GGG | 0.634855 | 1.3:-2623896 | MS.gene26974:CDS |
| GGATTTATGGAGGACTGTGT+GGG | 0.636168 | 1.3:-2624463 | MS.gene26974:CDS |
| TGGTTGATATGAATAAAGAG+AGG | 0.637788 | 1.3:-2624422 | MS.gene26974:CDS |
| AGATGATAGTTTGTTGACCC+TGG | 0.658807 | 1.3:-2623932 | MS.gene26974:CDS |
| AGTGGCTGATAAGATTCATG+AGG | 0.693084 | 1.3:-2624049 | MS.gene26974:CDS |
| ATGGGCACGTGAGAAAATGG+AGG | 0.695770 | 1.3:-2624289 | MS.gene26974:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTAAGTTCAAGATTTA+TGG | - | chr1.3:2624344-2624363 | MS.gene26974:CDS | 15.0% |
| !! | AAATTAAGTTCAAGATTTAT+GGG | - | chr1.3:2624345-2624364 | MS.gene26974:CDS | 15.0% |
| ! | GAATTATCCTTTATACTTCA+AGG | - | chr1.3:2624610-2624629 | MS.gene26974:CDS | 25.0% |
| !! | ATCAACAACAACATTTTCTT+CGG | + | chr1.3:2624258-2624277 | None:intergenic | 25.0% |
| ACAGTTACCTTGAAGTATAA+AGG | + | chr1.3:2624620-2624639 | None:intergenic | 30.0% | |
| TAGAGAGCTTAGGTTTAAAT+GGG | - | chr1.3:2624139-2624158 | MS.gene26974:CDS | 30.0% | |
| TATGAATAAAGAGAGGAAGA+AGG | - | chr1.3:2624031-2624050 | MS.gene26974:CDS | 30.0% | |
| TTAGAGAGCTTAGGTTTAAA+TGG | - | chr1.3:2624138-2624157 | MS.gene26974:CDS | 30.0% | |
| ! | ATTGGATCAATTTGCTTGAA+AGG | - | chr1.3:2624576-2624595 | MS.gene26974:CDS | 30.0% |
| ! | GTTGTTTCAGAAATGGAAAA+GGG | - | chr1.3:2623894-2623913 | MS.gene26974:CDS | 30.0% |
| ! | TACGGTACTTTTATCACATT+CGG | + | chr1.3:2623844-2623863 | None:intergenic | 30.0% |
| ! | TGGTTGATATGAATAAAGAG+AGG | - | chr1.3:2624024-2624043 | MS.gene26974:CDS | 30.0% |
| ! | TTAATTTTCCCTTTCCTCTT+AGG | + | chr1.3:2624332-2624351 | None:intergenic | 30.0% |
| !! | ACATGAGTTTTATGAGGATT+TGG | - | chr1.3:2624181-2624200 | MS.gene26974:CDS | 30.0% |
| !! | ATTTTAGTGAGGATTTATGG+AGG | - | chr1.3:2623973-2623992 | MS.gene26974:CDS | 30.0% |
| !! | TGGATTTTAGTGAGGATTTA+TGG | - | chr1.3:2623970-2623989 | MS.gene26974:CDS | 30.0% |
| AAAGAGATGTGTAGATTTGC+TGG | - | chr1.3:2624089-2624108 | MS.gene26974:CDS | 35.0% | |
| AGGAAGAAGGAGAAAATGAA+AGG | - | chr1.3:2624044-2624063 | MS.gene26974:CDS | 35.0% | |
| ATGAGGATTTGGAGAAAATG+AGG | - | chr1.3:2624192-2624211 | MS.gene26974:CDS | 35.0% | |
| GATTTATGGGCTTGATCTAT+CGG | - | chr1.3:2624358-2624377 | MS.gene26974:CDS | 35.0% | |
| GGAAGAAGGAGAAAATGAAA+GGG | - | chr1.3:2624045-2624064 | MS.gene26974:CDS | 35.0% | |
| TGATCTATCGGATCCTAAAT+GGG | - | chr1.3:2624370-2624389 | MS.gene26974:CDS | 35.0% | |
| TTGATCTATCGGATCCTAAA+TGG | - | chr1.3:2624369-2624388 | MS.gene26974:CDS | 35.0% | |
| ! | ACGGTACTTTTATCACATTC+GGG | + | chr1.3:2623843-2623862 | None:intergenic | 35.0% |
| ! | CTTCAACGACAGAATTTTCT+CGG | + | chr1.3:2624483-2624502 | None:intergenic | 35.0% |
| ! | GAAAATGTTGTTGTTGATGC+TGG | - | chr1.3:2624260-2624279 | MS.gene26974:CDS | 35.0% |
| ! | GGAGGTTAGTAATAAGGTTT+TGG | - | chr1.3:2624004-2624023 | MS.gene26974:CDS | 35.0% |
| ! | GGTTGTTTCAGAAATGGAAA+AGG | - | chr1.3:2623893-2623912 | MS.gene26974:CDS | 35.0% |
| ! | TGAAAGGGTTGTTTCAGAAA+TGG | - | chr1.3:2623887-2623906 | MS.gene26974:CDS | 35.0% |
| !! | GCTGCTTGTTATTGTTGAAA+GGG | - | chr1.3:2623872-2623891 | MS.gene26974:CDS | 35.0% |
| !! | TGCTGCTTGTTATTGTTGAA+AGG | - | chr1.3:2623871-2623890 | MS.gene26974:CDS | 35.0% |
| AACAAGCAGCATTGCATCTA+CGG | + | chr1.3:2623862-2623881 | None:intergenic | 40.0% | |
| AATTCTGTCGTTGAAGGAGA+AGG | - | chr1.3:2624487-2624506 | MS.gene26974:CDS | 40.0% | |
| AGTGGCTGATAAGATTCATG+AGG | - | chr1.3:2624397-2624416 | MS.gene26974:CDS | 40.0% | |
| CGAGAAAATTCTGTCGTTGA+AGG | - | chr1.3:2624481-2624500 | MS.gene26974:CDS | 40.0% | |
| TAAATGGGCACGTGAGAAAA+TGG | - | chr1.3:2624154-2624173 | MS.gene26974:CDS | 40.0% | |
| TCAGAAATGGAAAAGGGTAG+TGG | - | chr1.3:2623900-2623919 | MS.gene26974:CDS | 40.0% | |
| TGCATCTTCGCGATTTGATT+CGG | - | chr1.3:2623947-2623966 | MS.gene26974:CDS | 40.0% | |
| TGTGTGGGAGGTTAGTAATA+AGG | - | chr1.3:2623998-2624017 | MS.gene26974:CDS | 40.0% | |
| TGTTTGCATTTCCCGGTTAT+CGG | + | chr1.3:2624455-2624474 | None:intergenic | 40.0% | |
| ! | CGGTACTTTTATCACATTCG+GGG | + | chr1.3:2623842-2623861 | None:intergenic | 40.0% |
| ! | TGGTAATGTTGAGGAGAAGA+AGG | - | chr1.3:2624295-2624314 | MS.gene26974:CDS | 40.0% |
| ! | TTGGTCTTCCTAAGAGGAAA+GGG | - | chr1.3:2624321-2624340 | MS.gene26974:CDS | 40.0% |
| !! | AGATGATAGTTTGTTGACCC+TGG | - | chr1.3:2624514-2624533 | MS.gene26974:CDS | 40.0% |
| !! | GGAGGAACATGAGTTTTATG+AGG | - | chr1.3:2624175-2624194 | MS.gene26974:CDS | 40.0% |
| !! | GGTAACTTGTTTGCATTTCC+CGG | + | chr1.3:2624462-2624481 | None:intergenic | 40.0% |
| !! | GTAGATTTGCTGGTGAAGTT+GGG | - | chr1.3:2624099-2624118 | MS.gene26974:CDS | 40.0% |
| !! | TCGTGTTGATGGTAATGTTG+AGG | - | chr1.3:2624286-2624305 | MS.gene26974:CDS | 40.0% |
| !! | TGTAGATTTGCTGGTGAAGT+TGG | - | chr1.3:2624098-2624117 | MS.gene26974:CDS | 40.0% |
| !!! | TGATTCGGTGGATTTTAGTG+AGG | - | chr1.3:2623962-2623981 | MS.gene26974:CDS | 40.0% |
| AGAAGTTATTTGGCCGAAGG+AGG | - | chr1.3:2624424-2624443 | MS.gene26974:CDS | 45.0% | |
| AGAGCTTCTACAGCCTACTA+GGG | - | chr1.3:2624550-2624569 | MS.gene26974:CDS | 45.0% | |
| AGGATTTATGGAGGACTGTG+TGG | - | chr1.3:2623982-2624001 | MS.gene26974:CDS | 45.0% | |
| ATGAGGCGGGAGAAGTTATT+TGG | - | chr1.3:2624414-2624433 | MS.gene26974:CDS | 45.0% | |
| GCTGATAAGATTCATGAGGC+GGG | - | chr1.3:2624401-2624420 | MS.gene26974:CDS | 45.0% | |
| GGATCCTAAATGGGAACAAG+TGG | - | chr1.3:2624379-2624398 | MS.gene26974:CDS | 45.0% | |
| GGATTTATGGAGGACTGTGT+GGG | - | chr1.3:2623983-2624002 | MS.gene26974:CDS | 45.0% | |
| GGCTGATAAGATTCATGAGG+CGG | - | chr1.3:2624400-2624419 | MS.gene26974:CDS | 45.0% | |
| GTTGAGGAGAAGAAGGTTGT+TGG | - | chr1.3:2624302-2624321 | MS.gene26974:CDS | 45.0% | |
| TAGAGCTTCTACAGCCTACT+AGG | - | chr1.3:2624549-2624568 | MS.gene26974:CDS | 45.0% | |
| TCAGCCACTTGTTCCCATTT+AGG | + | chr1.3:2624386-2624405 | None:intergenic | 45.0% | |
| TTGATCCAATCCACCCTAGT+AGG | + | chr1.3:2624566-2624585 | None:intergenic | 45.0% | |
| ! | ATGGAAAAGGGTAGTGGTAG+TGG | - | chr1.3:2623906-2623925 | MS.gene26974:CDS | 45.0% |
| ! | GCGATTTGCTTAGAGAGCTT+AGG | - | chr1.3:2624129-2624148 | MS.gene26974:CDS | 45.0% |
| ! | TGGAAAAGGGTAGTGGTAGT+GGG | - | chr1.3:2623907-2623926 | MS.gene26974:CDS | 45.0% |
| !! | AGGTTGTTGGTCTTCCTAAG+AGG | - | chr1.3:2624315-2624334 | MS.gene26974:CDS | 45.0% |
| !! | ATCTTCGCGATTTGATTCGG+TGG | - | chr1.3:2623950-2623969 | MS.gene26974:CDS | 45.0% |
| !! | GTTGGTCTTCCTAAGAGGAA+AGG | - | chr1.3:2624320-2624339 | MS.gene26974:CDS | 45.0% |
| ATGGGCACGTGAGAAAATGG+AGG | - | chr1.3:2624157-2624176 | MS.gene26974:CDS | 50.0% | |
| CTCTACCCATTCAGCTACCA+GGG | + | chr1.3:2624534-2624553 | None:intergenic | 50.0% | |
| CTGTCGTTGAAGGAGAAGGA+TGG | - | chr1.3:2624491-2624510 | MS.gene26974:CDS | 50.0% | |
| GATGCTGGTGTTCGTGTTGA+TGG | - | chr1.3:2624275-2624294 | MS.gene26974:CDS | 50.0% | |
| GGGAGAAGTTATTTGGCCGA+AGG | - | chr1.3:2624421-2624440 | MS.gene26974:CDS | 50.0% | |
| GTTGACCCTGGTAGCTGAAT+GGG | - | chr1.3:2624526-2624545 | MS.gene26974:CDS | 50.0% | |
| TACAGCCTACTAGGGTGGAT+TGG | - | chr1.3:2624558-2624577 | MS.gene26974:CDS | 50.0% | |
| TGTTGACCCTGGTAGCTGAA+TGG | - | chr1.3:2624525-2624544 | MS.gene26974:CDS | 50.0% | |
| TTTATGGAGGACTGTGTGGG+AGG | - | chr1.3:2623986-2624005 | MS.gene26974:CDS | 50.0% | |
| ! | GGAAAAGGGTAGTGGTAGTG+GGG | - | chr1.3:2623908-2623927 | MS.gene26974:CDS | 50.0% |
| !! | GAAAAGGGTAGTGGTAGTGG+GGG | - | chr1.3:2623909-2623928 | MS.gene26974:CDS | 50.0% |
| AAGGAGGCGAAGCCGATAAC+CGG | - | chr1.3:2624440-2624459 | MS.gene26974:CDS | 55.0% | |
| GCTCTACCCATTCAGCTACC+AGG | + | chr1.3:2624535-2624554 | None:intergenic | 55.0% | |
| GCTGGTGAAGTTGGGATTCG+AGG | - | chr1.3:2624107-2624126 | MS.gene26974:CDS | 55.0% | |
| GCTTCTACAGCCTACTAGGG+TGG | - | chr1.3:2624553-2624572 | MS.gene26974:CDS | 55.0% | |
| !! | GTTATCGGCTTCGCCTCCTT+CGG | + | chr1.3:2624440-2624459 | None:intergenic | 55.0% |
| !! | TAGTGGGGGTGGTGATGGAA+AGG | - | chr1.3:2623923-2623942 | MS.gene26974:CDS | 55.0% |
| AGGAGGCGAAGCCGATAACC+GGG | - | chr1.3:2624441-2624460 | MS.gene26974:CDS | 60.0% | |
| !! | AAGGGTAGTGGTAGTGGGGG+TGG | - | chr1.3:2623912-2623931 | MS.gene26974:CDS | 60.0% |
| !! | AGTGGTAGTGGGGGTGGTGA+TGG | - | chr1.3:2623918-2623937 | MS.gene26974:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 2623813 | 2624655 | 2623813 | ID=MS.gene26974 |
| chr1.3 | mRNA | 2623813 | 2624655 | 2623813 | ID=MS.gene26974.t1;Parent=MS.gene26974 |
| chr1.3 | exon | 2623813 | 2624655 | 2623813 | ID=MS.gene26974.t1.exon1;Parent=MS.gene26974.t1 |
| chr1.3 | CDS | 2623813 | 2624655 | 2623813 | ID=cds.MS.gene26974.t1;Parent=MS.gene26974.t1 |
| Gene Sequence |
| Protein sequence |
