Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35048.t1 | XP_024638154.1 | 89.7 | 213 | 18 | 2 | 1 | 211 | 1 | 211 | 7.80E-68 | 266.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35048.t1 | Q9LIN3 | 74.3 | 152 | 35 | 3 | 1 | 151 | 1 | 149 | 1.7e-47 | 190.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35048.t1 | A0A396IAW5 | 89.7 | 213 | 18 | 2 | 1 | 211 | 1 | 211 | 5.6e-68 | 266.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene35048 | 0.802293 | 6.01E-49 | -1.69E-46 |
| MS.gene049159 | MS.gene35048 | 0.829229 | 5.79E-55 | -1.69E-46 |
| MS.gene049255 | MS.gene35048 | 0.863412 | 2.54E-64 | -1.69E-46 |
| MS.gene049341 | MS.gene35048 | 0.859811 | 3.20E-63 | -1.69E-46 |
| MS.gene049821 | MS.gene35048 | 0.829243 | 5.74E-55 | -1.69E-46 |
| MS.gene050020 | MS.gene35048 | 0.824831 | 6.52E-54 | -1.69E-46 |
| MS.gene050277 | MS.gene35048 | 0.827198 | 1.79E-54 | -1.69E-46 |
| MS.gene050384 | MS.gene35048 | 0.816207 | 6.23E-52 | -1.69E-46 |
| MS.gene050386 | MS.gene35048 | 0.821478 | 3.95E-53 | -1.69E-46 |
| MS.gene050437 | MS.gene35048 | 0.833579 | 4.92E-56 | -1.69E-46 |
| MS.gene050689 | MS.gene35048 | 0.887659 | 1.17E-72 | -1.69E-46 |
| MS.gene050807 | MS.gene35048 | 0.826331 | 2.88E-54 | -1.69E-46 |
| MS.gene050815 | MS.gene35048 | 0.845478 | 3.96E-59 | -1.69E-46 |
| MS.gene050838 | MS.gene35048 | 0.819286 | 1.26E-52 | -1.69E-46 |
| MS.gene050901 | MS.gene35048 | 0.802288 | 6.02E-49 | -1.69E-46 |
| MS.gene051003 | MS.gene35048 | 0.820414 | 6.95E-53 | -1.69E-46 |
| MS.gene051243 | MS.gene35048 | 0.838579 | 2.64E-57 | -1.69E-46 |
| MS.gene051245 | MS.gene35048 | 0.811754 | 5.98E-51 | -1.69E-46 |
| MS.gene051328 | MS.gene35048 | 0.989769 | 1.44E-179 | -1.69E-46 |
| MS.gene05134 | MS.gene35048 | 0.832276 | 1.04E-55 | -1.69E-46 |
| MS.gene051577 | MS.gene35048 | 0.809864 | 1.53E-50 | -1.69E-46 |
| MS.gene05157 | MS.gene35048 | 0.814709 | 1.34E-51 | -1.69E-46 |
| MS.gene051719 | MS.gene35048 | 0.80682 | 6.83E-50 | -1.69E-46 |
| MS.gene052133 | MS.gene35048 | 0.823452 | 1.38E-53 | -1.69E-46 |
| MS.gene052397 | MS.gene35048 | 0.809172 | 2.16E-50 | -1.69E-46 |
| MS.gene052516 | MS.gene35048 | 0.847331 | 1.24E-59 | -1.69E-46 |
| MS.gene052665 | MS.gene35048 | 0.812635 | 3.84E-51 | -1.69E-46 |
| MS.gene052863 | MS.gene35048 | 0.813996 | 1.93E-51 | -1.69E-46 |
| MS.gene052879 | MS.gene35048 | 0.815947 | 7.12E-52 | -1.69E-46 |
| MS.gene052947 | MS.gene35048 | 0.843706 | 1.19E-58 | -1.69E-46 |
| MS.gene053008 | MS.gene35048 | 0.857567 | 1.50E-62 | -1.69E-46 |
| MS.gene053058 | MS.gene35048 | 0.82152 | 3.87E-53 | -1.69E-46 |
| MS.gene053226 | MS.gene35048 | 0.821107 | 4.81E-53 | -1.69E-46 |
| MS.gene053581 | MS.gene35048 | 0.824775 | 6.72E-54 | -1.69E-46 |
| MS.gene053590 | MS.gene35048 | 0.82994 | 3.89E-55 | -1.69E-46 |
| MS.gene05364 | MS.gene35048 | 0.81554 | 8.77E-52 | -1.69E-46 |
| MS.gene05462 | MS.gene35048 | 0.808486 | 3.03E-50 | -1.69E-46 |
| MS.gene055162 | MS.gene35048 | 0.819682 | 1.02E-52 | -1.69E-46 |
| MS.gene05517 | MS.gene35048 | 0.823952 | 1.05E-53 | -1.69E-46 |
| MS.gene055465 | MS.gene35048 | 0.816522 | 5.30E-52 | -1.69E-46 |
| MS.gene055466 | MS.gene35048 | 0.835937 | 1.25E-56 | -1.69E-46 |
| MS.gene055468 | MS.gene35048 | 0.842236 | 2.93E-58 | -1.69E-46 |
| MS.gene055512 | MS.gene35048 | 0.865453 | 5.84E-65 | -1.69E-46 |
| MS.gene055513 | MS.gene35048 | 0.804885 | 1.74E-49 | -1.69E-46 |
| MS.gene055580 | MS.gene35048 | -0.824632 | 7.27E-54 | -1.69E-46 |
| MS.gene055912 | MS.gene35048 | 0.814137 | 1.80E-51 | -1.69E-46 |
| MS.gene055979 | MS.gene35048 | 0.83142 | 1.69E-55 | -1.69E-46 |
| MS.gene056043 | MS.gene35048 | -0.824473 | 7.92E-54 | -1.69E-46 |
| MS.gene056181 | MS.gene35048 | 0.813657 | 2.29E-51 | -1.69E-46 |
| MS.gene056215 | MS.gene35048 | 0.838291 | 3.14E-57 | -1.69E-46 |
| MS.gene056580 | MS.gene35048 | 0.820598 | 6.30E-53 | -1.69E-46 |
| MS.gene056631 | MS.gene35048 | 0.831473 | 1.64E-55 | -1.69E-46 |
| MS.gene056760 | MS.gene35048 | 0.831949 | 1.25E-55 | -1.69E-46 |
| MS.gene057057 | MS.gene35048 | 0.828917 | 6.89E-55 | -1.69E-46 |
| MS.gene057140 | MS.gene35048 | 0.840868 | 6.71E-58 | -1.69E-46 |
| MS.gene057234 | MS.gene35048 | 0.805962 | 1.04E-49 | -1.69E-46 |
| MS.gene057444 | MS.gene35048 | 0.806707 | 7.22E-50 | -1.69E-46 |
| MS.gene057446 | MS.gene35048 | 0.803948 | 2.73E-49 | -1.69E-46 |
| MS.gene057693 | MS.gene35048 | 0.827172 | 1.81E-54 | -1.69E-46 |
| MS.gene057694 | MS.gene35048 | 0.805175 | 1.52E-49 | -1.69E-46 |
| MS.gene057705 | MS.gene35048 | 0.835466 | 1.65E-56 | -1.69E-46 |
| MS.gene058054 | MS.gene35048 | 0.80412 | 2.52E-49 | -1.69E-46 |
| MS.gene058055 | MS.gene35048 | 0.821643 | 3.62E-53 | -1.69E-46 |
| MS.gene058084 | MS.gene35048 | 0.81586 | 7.45E-52 | -1.69E-46 |
| MS.gene058646 | MS.gene35048 | 0.815137 | 1.08E-51 | -1.69E-46 |
| MS.gene058906 | MS.gene35048 | 0.847877 | 8.76E-60 | -1.69E-46 |
| MS.gene058976 | MS.gene35048 | 0.803032 | 4.23E-49 | -1.69E-46 |
| MS.gene059146 | MS.gene35048 | 0.80359 | 3.24E-49 | -1.69E-46 |
| MS.gene059151 | MS.gene35048 | 0.81438 | 1.59E-51 | -1.69E-46 |
| MS.gene05978 | MS.gene35048 | 0.842384 | 2.67E-58 | -1.69E-46 |
| MS.gene059842 | MS.gene35048 | 0.841384 | 4.91E-58 | -1.69E-46 |
| MS.gene059937 | MS.gene35048 | 0.818999 | 1.46E-52 | -1.69E-46 |
| MS.gene06001 | MS.gene35048 | 0.820089 | 8.25E-53 | -1.69E-46 |
| MS.gene060310 | MS.gene35048 | 0.808807 | 2.58E-50 | -1.69E-46 |
| MS.gene060429 | MS.gene35048 | 0.858251 | 9.37E-63 | -1.69E-46 |
| MS.gene060587 | MS.gene35048 | 0.8143 | 1.65E-51 | -1.69E-46 |
| MS.gene060803 | MS.gene35048 | 0.82509 | 5.66E-54 | -1.69E-46 |
| MS.gene060917 | MS.gene35048 | 0.809577 | 1.77E-50 | -1.69E-46 |
| MS.gene061176 | MS.gene35048 | 0.802836 | 4.64E-49 | -1.69E-46 |
| MS.gene061177 | MS.gene35048 | 0.803084 | 4.13E-49 | -1.69E-46 |
| MS.gene061178 | MS.gene35048 | 0.802531 | 5.37E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35048.t1 | MTR_4g070140 | 59.524 | 84 | 34 | 0 | 2 | 85 | 3 | 86 | 9.55e-30 | 109 |
| MS.gene35048.t1 | MTR_4g070080 | 58.228 | 79 | 33 | 0 | 6 | 84 | 5 | 83 | 1.21e-28 | 105 |
| MS.gene35048.t1 | MTR_4g070190 | 55.000 | 80 | 36 | 0 | 6 | 85 | 7 | 86 | 1.46e-26 | 100 |
| MS.gene35048.t1 | MTR_7g105260 | 43.038 | 79 | 45 | 0 | 7 | 85 | 32 | 110 | 1.28e-18 | 79.0 |
| MS.gene35048.t1 | MTR_3g025880 | 40.476 | 84 | 50 | 0 | 1 | 84 | 38 | 121 | 5.83e-18 | 81.6 |
| MS.gene35048.t1 | MTR_3g080130 | 47.368 | 76 | 40 | 0 | 8 | 83 | 37 | 112 | 3.32e-17 | 75.1 |
| MS.gene35048.t1 | MTR_3g075500 | 45.455 | 88 | 46 | 1 | 4 | 89 | 203 | 290 | 8.98e-17 | 77.0 |
| MS.gene35048.t1 | MTR_1g045510 | 41.975 | 81 | 47 | 0 | 4 | 84 | 201 | 281 | 1.34e-16 | 76.6 |
| MS.gene35048.t1 | MTR_7g099940 | 46.250 | 80 | 43 | 0 | 8 | 87 | 36 | 115 | 1.48e-16 | 73.6 |
| MS.gene35048.t1 | MTR_1g092860 | 44.156 | 77 | 43 | 0 | 8 | 84 | 193 | 269 | 2.37e-16 | 75.9 |
| MS.gene35048.t1 | MTR_4g109540 | 36.905 | 84 | 53 | 0 | 1 | 84 | 36 | 119 | 3.82e-16 | 75.1 |
| MS.gene35048.t1 | MTR_7g013730 | 40.789 | 76 | 45 | 0 | 8 | 83 | 41 | 116 | 4.58e-16 | 74.7 |
| MS.gene35048.t1 | MTR_3g084040 | 41.975 | 81 | 46 | 1 | 8 | 88 | 37 | 116 | 2.37e-15 | 70.5 |
| MS.gene35048.t1 | MTR_4g035310 | 46.479 | 71 | 37 | 1 | 3 | 72 | 12 | 82 | 3.95e-15 | 72.4 |
| MS.gene35048.t1 | MTR_4g035310 | 46.479 | 71 | 37 | 1 | 3 | 72 | 12 | 82 | 4.71e-15 | 72.0 |
| MS.gene35048.t1 | MTR_2g096560 | 40.244 | 82 | 49 | 0 | 8 | 89 | 8 | 89 | 6.04e-15 | 67.8 |
| MS.gene35048.t1 | MTR_7g117495 | 45.833 | 72 | 35 | 1 | 3 | 70 | 14 | 85 | 1.23e-14 | 70.9 |
| MS.gene35048.t1 | MTR_7g117495 | 45.833 | 72 | 35 | 1 | 3 | 70 | 14 | 85 | 1.50e-14 | 70.5 |
| MS.gene35048.t1 | MTR_8g024520 | 40.741 | 81 | 41 | 2 | 2 | 76 | 14 | 93 | 1.83e-14 | 70.9 |
| MS.gene35048.t1 | MTR_8g024520 | 40.741 | 81 | 41 | 2 | 2 | 76 | 14 | 93 | 1.87e-14 | 70.9 |
| MS.gene35048.t1 | MTR_6g477870 | 41.026 | 78 | 46 | 0 | 8 | 85 | 96 | 173 | 1.92e-14 | 68.9 |
| MS.gene35048.t1 | MTR_4g109540 | 39.189 | 74 | 45 | 0 | 11 | 84 | 54 | 127 | 4.64e-14 | 69.3 |
| MS.gene35048.t1 | MTR_1g064230 | 46.053 | 76 | 41 | 0 | 8 | 83 | 197 | 272 | 7.61e-14 | 68.9 |
| MS.gene35048.t1 | MTR_4g104470 | 43.590 | 78 | 44 | 0 | 7 | 84 | 216 | 293 | 1.43e-13 | 68.6 |
| MS.gene35048.t1 | MTR_4g104470 | 38.272 | 81 | 50 | 0 | 5 | 85 | 120 | 200 | 6.68e-13 | 66.6 |
| MS.gene35048.t1 | MTR_3g029580 | 32.353 | 102 | 64 | 1 | 8 | 109 | 33 | 129 | 1.50e-13 | 65.5 |
| MS.gene35048.t1 | MTR_2g026180 | 35.556 | 90 | 51 | 2 | 8 | 97 | 5 | 87 | 1.79e-13 | 68.9 |
| MS.gene35048.t1 | MTR_2g026180 | 36.709 | 79 | 49 | 1 | 8 | 86 | 107 | 184 | 8.26e-13 | 67.0 |
| MS.gene35048.t1 | MTR_5g097580 | 31.250 | 112 | 71 | 3 | 8 | 116 | 7 | 115 | 2.25e-13 | 68.6 |
| MS.gene35048.t1 | MTR_5g097580 | 36.585 | 82 | 51 | 1 | 8 | 89 | 107 | 187 | 1.46e-12 | 66.2 |
| MS.gene35048.t1 | MTR_1g073690 | 39.241 | 79 | 47 | 1 | 8 | 86 | 113 | 190 | 2.74e-13 | 68.2 |
| MS.gene35048.t1 | MTR_1g073690 | 33.333 | 81 | 52 | 1 | 3 | 83 | 2 | 80 | 7.92e-12 | 63.9 |
| MS.gene35048.t1 | MTR_5g097580 | 31.250 | 112 | 71 | 3 | 8 | 116 | 7 | 115 | 2.80e-13 | 68.2 |
| MS.gene35048.t1 | MTR_5g097580 | 36.585 | 82 | 51 | 1 | 8 | 89 | 107 | 187 | 1.42e-12 | 66.2 |
| MS.gene35048.t1 | MTR_6g004810 | 31.325 | 83 | 57 | 0 | 8 | 90 | 134 | 216 | 2.82e-13 | 68.2 |
| MS.gene35048.t1 | MTR_3g055990 | 31.624 | 117 | 74 | 3 | 3 | 116 | 2 | 115 | 3.82e-13 | 67.8 |
| MS.gene35048.t1 | MTR_3g055990 | 35.366 | 82 | 52 | 1 | 8 | 89 | 107 | 187 | 3.20e-11 | 62.4 |
| MS.gene35048.t1 | MTR_3g055990 | 31.624 | 117 | 74 | 3 | 3 | 116 | 2 | 115 | 3.83e-13 | 67.8 |
| MS.gene35048.t1 | MTR_3g055990 | 35.366 | 82 | 52 | 1 | 8 | 89 | 107 | 187 | 3.63e-11 | 62.0 |
| MS.gene35048.t1 | MTR_2g026180 | 36.709 | 79 | 49 | 1 | 8 | 86 | 37 | 114 | 4.61e-13 | 67.4 |
| MS.gene35048.t1 | MTR_3g116130 | 48.276 | 58 | 30 | 0 | 3 | 60 | 25 | 82 | 8.84e-13 | 65.9 |
| MS.gene35048.t1 | MTR_3g082650 | 35.000 | 80 | 52 | 0 | 8 | 87 | 107 | 186 | 9.44e-13 | 66.2 |
| MS.gene35048.t1 | MTR_4g081520 | 42.353 | 85 | 43 | 2 | 4 | 85 | 48 | 129 | 1.24e-12 | 63.2 |
| MS.gene35048.t1 | MTR_7g106440 | 37.662 | 77 | 48 | 0 | 7 | 83 | 212 | 288 | 1.48e-12 | 65.5 |
| MS.gene35048.t1 | MTR_7g107580 | 39.189 | 74 | 45 | 0 | 9 | 82 | 350 | 423 | 1.76e-12 | 65.9 |
| MS.gene35048.t1 | MTR_7g107580 | 39.189 | 74 | 45 | 0 | 9 | 82 | 351 | 424 | 1.93e-12 | 65.9 |
| MS.gene35048.t1 | MTR_3g075500 | 44.776 | 67 | 37 | 0 | 4 | 70 | 203 | 269 | 1.96e-12 | 65.1 |
| MS.gene35048.t1 | MTR_5g064120 | 42.029 | 69 | 39 | 1 | 8 | 76 | 17 | 84 | 2.47e-12 | 64.7 |
| MS.gene35048.t1 | MTR_3g116130 | 48.276 | 58 | 30 | 0 | 3 | 60 | 25 | 82 | 3.30e-12 | 65.1 |
| MS.gene35048.t1 | MTR_3g103420 | 36.364 | 88 | 53 | 2 | 8 | 94 | 118 | 203 | 3.90e-12 | 64.7 |
| MS.gene35048.t1 | MTR_4g117350 | 36.471 | 85 | 52 | 1 | 8 | 92 | 72 | 154 | 7.16e-12 | 61.6 |
| MS.gene35048.t1 | MTR_3g084040 | 35.616 | 73 | 41 | 1 | 8 | 80 | 37 | 103 | 7.51e-12 | 60.1 |
| MS.gene35048.t1 | MTR_4g063560 | 38.356 | 73 | 45 | 0 | 8 | 80 | 34 | 106 | 8.67e-12 | 60.1 |
| MS.gene35048.t1 | MTR_5g044970 | 30.645 | 124 | 73 | 3 | 9 | 122 | 12 | 132 | 1.44e-11 | 60.8 |
| MS.gene35048.t1 | MTR_3g065190 | 44.737 | 76 | 41 | 1 | 9 | 83 | 114 | 189 | 1.60e-11 | 62.8 |
| MS.gene35048.t1 | MTR_8g074790 | 40.789 | 76 | 45 | 0 | 9 | 84 | 64 | 139 | 2.89e-11 | 61.6 |
| MS.gene35048.t1 | MTR_1g056520 | 33.333 | 90 | 60 | 0 | 7 | 96 | 207 | 296 | 4.72e-11 | 61.2 |
| MS.gene35048.t1 | MTR_2g013130 | 32.222 | 90 | 61 | 0 | 8 | 97 | 284 | 373 | 6.52e-11 | 61.2 |
| MS.gene35048.t1 | MTR_2g013130 | 32.222 | 90 | 61 | 0 | 8 | 97 | 299 | 388 | 8.03e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35048.t1 | AT3G26420 | 53.755 | 253 | 62 | 7 | 1 | 208 | 1 | 243 | 9.07e-69 | 211 |
| MS.gene35048.t1 | AT4G39260 | 60.976 | 82 | 32 | 0 | 4 | 85 | 3 | 84 | 1.46e-30 | 108 |
| MS.gene35048.t1 | AT4G39260 | 61.728 | 81 | 31 | 0 | 4 | 84 | 3 | 83 | 4.42e-29 | 107 |
| MS.gene35048.t1 | AT2G21660 | 60.759 | 79 | 31 | 0 | 6 | 84 | 7 | 85 | 1.10e-28 | 105 |
| MS.gene35048.t1 | AT1G60650 | 41.221 | 131 | 68 | 3 | 6 | 136 | 11 | 132 | 1.69e-28 | 108 |
| MS.gene35048.t1 | AT1G60650 | 41.221 | 131 | 68 | 3 | 6 | 136 | 11 | 132 | 1.69e-28 | 108 |
| MS.gene35048.t1 | AT2G21660 | 60.759 | 79 | 31 | 0 | 6 | 84 | 7 | 85 | 1.73e-28 | 105 |
| MS.gene35048.t1 | AT5G04280 | 38.953 | 172 | 87 | 4 | 1 | 159 | 1 | 167 | 8.62e-26 | 102 |
| MS.gene35048.t1 | AT4G39260 | 60.606 | 66 | 26 | 0 | 4 | 69 | 3 | 68 | 2.34e-22 | 87.8 |
| MS.gene35048.t1 | AT4G13850 | 46.429 | 84 | 45 | 0 | 8 | 91 | 36 | 119 | 7.36e-19 | 79.7 |
| MS.gene35048.t1 | AT4G13850 | 46.429 | 84 | 45 | 0 | 8 | 91 | 36 | 119 | 9.14e-19 | 79.7 |
| MS.gene35048.t1 | AT4G13850 | 49.351 | 77 | 39 | 0 | 8 | 84 | 36 | 112 | 9.77e-19 | 79.0 |
| MS.gene35048.t1 | AT4G13850 | 46.429 | 84 | 45 | 0 | 8 | 91 | 36 | 119 | 1.03e-18 | 79.7 |
| MS.gene35048.t1 | AT3G23830 | 43.023 | 86 | 49 | 0 | 8 | 93 | 36 | 121 | 5.12e-18 | 77.4 |
| MS.gene35048.t1 | AT3G23830 | 43.023 | 86 | 49 | 0 | 8 | 93 | 36 | 121 | 5.12e-18 | 77.4 |
| MS.gene35048.t1 | AT2G37220 | 48.052 | 77 | 40 | 0 | 8 | 84 | 205 | 281 | 9.86e-18 | 79.7 |
| MS.gene35048.t1 | AT2G37220 | 38.202 | 89 | 53 | 1 | 6 | 94 | 90 | 176 | 3.46e-12 | 64.3 |
| MS.gene35048.t1 | AT3G53460 | 46.753 | 77 | 41 | 0 | 8 | 84 | 258 | 334 | 6.04e-17 | 78.2 |
| MS.gene35048.t1 | AT3G53460 | 46.753 | 77 | 41 | 0 | 8 | 84 | 258 | 334 | 6.04e-17 | 78.2 |
| MS.gene35048.t1 | AT3G53460 | 46.753 | 77 | 41 | 0 | 8 | 84 | 258 | 334 | 6.04e-17 | 78.2 |
| MS.gene35048.t1 | AT5G06210 | 42.500 | 80 | 46 | 0 | 8 | 87 | 35 | 114 | 6.34e-17 | 74.7 |
| MS.gene35048.t1 | AT5G61030 | 43.421 | 76 | 43 | 0 | 8 | 83 | 41 | 116 | 7.58e-17 | 77.8 |
| MS.gene35048.t1 | AT5G61030 | 43.421 | 76 | 43 | 0 | 8 | 83 | 41 | 116 | 7.58e-17 | 77.8 |
| MS.gene35048.t1 | AT3G53460 | 46.753 | 77 | 41 | 0 | 8 | 84 | 279 | 355 | 9.91e-17 | 77.8 |
| MS.gene35048.t1 | AT1G18630 | 50.000 | 76 | 38 | 0 | 8 | 83 | 37 | 112 | 1.19e-16 | 74.3 |
| MS.gene35048.t1 | AT1G33470 | 47.945 | 73 | 37 | 1 | 1 | 72 | 1 | 73 | 4.82e-16 | 74.3 |
| MS.gene35048.t1 | AT1G33470 | 47.945 | 73 | 37 | 1 | 1 | 72 | 1 | 73 | 5.95e-16 | 74.3 |
| MS.gene35048.t1 | AT1G33470 | 47.945 | 73 | 37 | 1 | 1 | 72 | 1 | 73 | 5.99e-16 | 74.3 |
| MS.gene35048.t1 | AT2G46780 | 46.667 | 75 | 39 | 1 | 2 | 76 | 17 | 90 | 1.84e-15 | 73.9 |
| MS.gene35048.t1 | AT2G46780 | 46.667 | 75 | 39 | 1 | 2 | 76 | 17 | 90 | 1.84e-15 | 73.9 |
| MS.gene35048.t1 | AT1G22910 | 46.575 | 73 | 38 | 1 | 1 | 72 | 7 | 79 | 1.94e-15 | 73.2 |
| MS.gene35048.t1 | AT4G24770 | 43.210 | 81 | 46 | 0 | 4 | 84 | 241 | 321 | 2.07e-15 | 73.9 |
| MS.gene35048.t1 | AT4G24770 | 38.272 | 81 | 50 | 0 | 5 | 85 | 148 | 228 | 1.60e-12 | 65.9 |
| MS.gene35048.t1 | AT4G24770 | 43.210 | 81 | 46 | 0 | 4 | 84 | 241 | 321 | 2.07e-15 | 73.9 |
| MS.gene35048.t1 | AT4G24770 | 38.272 | 81 | 50 | 0 | 5 | 85 | 148 | 228 | 1.60e-12 | 65.9 |
| MS.gene35048.t1 | AT5G04280 | 40.299 | 134 | 62 | 4 | 39 | 159 | 1 | 129 | 2.45e-15 | 73.2 |
| MS.gene35048.t1 | AT5G04280 | 40.299 | 134 | 62 | 4 | 39 | 159 | 1 | 129 | 2.45e-15 | 73.2 |
| MS.gene35048.t1 | AT5G04280 | 40.299 | 134 | 62 | 4 | 39 | 159 | 1 | 129 | 2.45e-15 | 73.2 |
| MS.gene35048.t1 | AT5G04280 | 40.299 | 134 | 62 | 4 | 39 | 159 | 1 | 129 | 2.45e-15 | 73.2 |
| MS.gene35048.t1 | AT1G22910 | 46.575 | 73 | 38 | 1 | 1 | 72 | 7 | 79 | 2.65e-15 | 72.4 |
| MS.gene35048.t1 | AT5G47320 | 35.922 | 103 | 64 | 1 | 8 | 108 | 32 | 134 | 3.81e-15 | 71.6 |
| MS.gene35048.t1 | AT5G59865 | 43.038 | 79 | 45 | 0 | 8 | 86 | 27 | 105 | 4.74e-15 | 68.9 |
| MS.gene35048.t1 | AT1G60000 | 41.667 | 84 | 49 | 0 | 1 | 84 | 171 | 254 | 5.10e-15 | 72.0 |
| MS.gene35048.t1 | AT2G21690 | 46.377 | 69 | 37 | 0 | 1 | 69 | 1 | 69 | 5.51e-15 | 68.9 |
| MS.gene35048.t1 | AT1G73530 | 35.514 | 107 | 61 | 2 | 8 | 111 | 78 | 179 | 5.84e-15 | 70.5 |
| MS.gene35048.t1 | AT1G22910 | 46.575 | 73 | 38 | 1 | 1 | 72 | 7 | 79 | 2.01e-14 | 71.2 |
| MS.gene35048.t1 | AT1G60650 | 36.538 | 104 | 57 | 3 | 33 | 136 | 1 | 95 | 2.12e-14 | 70.1 |
| MS.gene35048.t1 | AT2G37510 | 50.000 | 74 | 37 | 0 | 8 | 81 | 35 | 108 | 2.48e-14 | 67.8 |
| MS.gene35048.t1 | AT3G20930 | 41.558 | 77 | 45 | 0 | 8 | 84 | 283 | 359 | 3.30e-14 | 70.9 |
| MS.gene35048.t1 | AT1G74230 | 43.421 | 76 | 42 | 1 | 8 | 83 | 35 | 109 | 6.05e-14 | 69.3 |
| MS.gene35048.t1 | AT1G03457 | 41.096 | 73 | 43 | 0 | 9 | 81 | 227 | 299 | 7.22e-14 | 69.3 |
| MS.gene35048.t1 | AT3G13224 | 32.143 | 84 | 57 | 0 | 8 | 91 | 110 | 193 | 8.56e-14 | 69.3 |
| MS.gene35048.t1 | AT1G60650 | 38.776 | 98 | 51 | 3 | 39 | 136 | 1 | 89 | 1.01e-13 | 68.2 |
| MS.gene35048.t1 | AT3G08000 | 44.737 | 76 | 42 | 0 | 8 | 83 | 42 | 117 | 1.05e-13 | 66.2 |
| MS.gene35048.t1 | AT4G14300 | 37.805 | 82 | 49 | 1 | 3 | 84 | 2 | 81 | 1.06e-13 | 69.3 |
| MS.gene35048.t1 | AT4G14300 | 36.709 | 79 | 49 | 1 | 8 | 86 | 111 | 188 | 4.88e-12 | 64.7 |
| MS.gene35048.t1 | AT4G14300 | 37.805 | 82 | 49 | 1 | 3 | 84 | 2 | 81 | 1.06e-13 | 69.3 |
| MS.gene35048.t1 | AT4G14300 | 36.709 | 79 | 49 | 1 | 8 | 86 | 111 | 188 | 4.88e-12 | 64.7 |
| MS.gene35048.t1 | AT4G26650 | 32.456 | 114 | 70 | 2 | 2 | 115 | 10 | 116 | 1.18e-13 | 69.3 |
| MS.gene35048.t1 | AT4G26650 | 32.456 | 114 | 70 | 2 | 2 | 115 | 7 | 113 | 1.29e-13 | 69.3 |
| MS.gene35048.t1 | AT1G78260 | 43.478 | 69 | 38 | 1 | 8 | 76 | 18 | 85 | 1.41e-13 | 68.2 |
| MS.gene35048.t1 | AT3G07810 | 34.615 | 78 | 49 | 1 | 8 | 85 | 7 | 82 | 1.46e-13 | 69.3 |
| MS.gene35048.t1 | AT3G07810 | 37.805 | 82 | 50 | 1 | 8 | 89 | 109 | 189 | 1.22e-12 | 66.6 |
| MS.gene35048.t1 | AT3G07810 | 34.615 | 78 | 49 | 1 | 8 | 85 | 7 | 82 | 1.50e-13 | 68.9 |
| MS.gene35048.t1 | AT3G07810 | 37.805 | 82 | 50 | 1 | 8 | 89 | 109 | 189 | 1.35e-12 | 66.2 |
| MS.gene35048.t1 | AT3G13224 | 32.143 | 84 | 57 | 0 | 8 | 91 | 101 | 184 | 1.86e-13 | 68.6 |
| MS.gene35048.t1 | AT1G03457 | 41.096 | 73 | 43 | 0 | 9 | 81 | 341 | 413 | 2.20e-13 | 68.6 |
| MS.gene35048.t1 | AT4G13860 | 42.466 | 73 | 42 | 0 | 8 | 80 | 4 | 76 | 2.26e-13 | 63.5 |
| MS.gene35048.t1 | AT1G03457 | 41.096 | 73 | 43 | 0 | 9 | 81 | 332 | 404 | 2.28e-13 | 68.6 |
| MS.gene35048.t1 | AT1G76460 | 50.943 | 53 | 26 | 0 | 8 | 60 | 25 | 77 | 2.50e-13 | 67.8 |
| MS.gene35048.t1 | AT5G47620 | 37.179 | 78 | 47 | 1 | 8 | 85 | 7 | 82 | 3.41e-13 | 68.2 |
| MS.gene35048.t1 | AT5G47620 | 37.179 | 78 | 47 | 1 | 8 | 85 | 7 | 82 | 3.41e-13 | 68.2 |
| MS.gene35048.t1 | AT5G47620 | 37.179 | 78 | 47 | 1 | 8 | 85 | 7 | 82 | 3.41e-13 | 68.2 |
| MS.gene35048.t1 | AT1G22330 | 39.189 | 74 | 44 | 1 | 3 | 76 | 13 | 85 | 7.03e-13 | 66.2 |
| MS.gene35048.t1 | AT1G78260 | 43.478 | 69 | 38 | 1 | 8 | 76 | 18 | 85 | 7.62e-13 | 66.2 |
| MS.gene35048.t1 | AT1G20880 | 45.455 | 66 | 35 | 1 | 8 | 72 | 25 | 90 | 8.48e-13 | 65.9 |
| MS.gene35048.t1 | AT1G20880 | 45.455 | 66 | 35 | 1 | 8 | 72 | 25 | 90 | 8.48e-13 | 65.9 |
| MS.gene35048.t1 | AT1G20880 | 45.455 | 66 | 35 | 1 | 8 | 72 | 25 | 90 | 8.48e-13 | 65.9 |
| MS.gene35048.t1 | AT5G55550 | 30.952 | 126 | 79 | 3 | 8 | 133 | 7 | 124 | 9.55e-13 | 66.6 |
| MS.gene35048.t1 | AT5G55550 | 30.952 | 126 | 79 | 3 | 8 | 133 | 7 | 124 | 9.55e-13 | 66.6 |
| MS.gene35048.t1 | AT5G55550 | 30.952 | 126 | 79 | 3 | 8 | 133 | 7 | 124 | 9.55e-13 | 66.6 |
| MS.gene35048.t1 | AT5G55550 | 30.952 | 126 | 79 | 3 | 8 | 133 | 7 | 124 | 9.55e-13 | 66.6 |
| MS.gene35048.t1 | AT5G55550 | 30.952 | 126 | 79 | 3 | 8 | 133 | 7 | 124 | 9.55e-13 | 66.6 |
| MS.gene35048.t1 | AT5G55550 | 32.075 | 106 | 65 | 2 | 8 | 113 | 7 | 105 | 1.15e-12 | 66.6 |
| MS.gene35048.t1 | AT5G55550 | 32.075 | 106 | 65 | 2 | 8 | 113 | 7 | 105 | 1.15e-12 | 66.6 |
| MS.gene35048.t1 | AT5G55550 | 32.075 | 106 | 65 | 2 | 8 | 113 | 7 | 105 | 1.15e-12 | 66.6 |
| MS.gene35048.t1 | AT5G55550 | 32.075 | 106 | 65 | 2 | 8 | 113 | 7 | 105 | 1.15e-12 | 66.6 |
| MS.gene35048.t1 | AT5G40490 | 36.145 | 83 | 53 | 0 | 8 | 90 | 131 | 213 | 1.29e-12 | 66.2 |
| MS.gene35048.t1 | AT1G58470 | 36.364 | 88 | 55 | 1 | 8 | 95 | 121 | 207 | 1.79e-12 | 65.9 |
| MS.gene35048.t1 | AT1G58470 | 36.364 | 88 | 55 | 1 | 8 | 95 | 121 | 207 | 1.79e-12 | 65.9 |
| MS.gene35048.t1 | AT5G50250 | 41.026 | 78 | 46 | 0 | 7 | 84 | 207 | 284 | 3.43e-12 | 64.3 |
| MS.gene35048.t1 | AT3G20930 | 39.024 | 82 | 45 | 1 | 8 | 84 | 283 | 364 | 3.68e-12 | 64.7 |
| MS.gene35048.t1 | AT3G54770 | 41.667 | 72 | 38 | 1 | 3 | 70 | 13 | 84 | 3.86e-12 | 63.9 |
| MS.gene35048.t1 | AT3G54770 | 41.667 | 72 | 38 | 1 | 3 | 70 | 13 | 84 | 4.42e-12 | 63.9 |
| MS.gene35048.t1 | AT5G47620 | 40.000 | 65 | 39 | 0 | 8 | 72 | 7 | 71 | 8.17e-12 | 63.9 |
| MS.gene35048.t1 | AT5G40490 | 37.931 | 87 | 46 | 2 | 8 | 90 | 114 | 196 | 8.96e-12 | 63.9 |
| MS.gene35048.t1 | AT5G53720 | 41.026 | 78 | 45 | 1 | 6 | 83 | 8 | 84 | 1.28e-11 | 59.3 |
| MS.gene35048.t1 | AT5G54580 | 40.449 | 89 | 47 | 2 | 4 | 89 | 53 | 138 | 1.54e-11 | 60.5 |
| MS.gene35048.t1 | AT4G03110 | 41.096 | 73 | 43 | 0 | 9 | 81 | 351 | 423 | 2.44e-11 | 62.4 |
| MS.gene35048.t1 | AT3G46020 | 34.524 | 84 | 55 | 0 | 1 | 84 | 1 | 84 | 3.04e-11 | 58.5 |
| MS.gene35048.t1 | AT5G55550 | 38.028 | 71 | 42 | 1 | 8 | 78 | 7 | 75 | 4.55e-11 | 62.0 |
| MS.gene35048.t1 | AT2G33410 | 34.177 | 79 | 51 | 1 | 8 | 86 | 111 | 188 | 5.46e-11 | 61.6 |
| MS.gene35048.t1 | AT2G33410 | 32.927 | 82 | 53 | 1 | 3 | 84 | 2 | 81 | 7.18e-11 | 61.2 |
| MS.gene35048.t1 | AT5G55550 | 38.028 | 71 | 42 | 1 | 8 | 78 | 7 | 75 | 5.55e-11 | 61.6 |
Find 60 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGGACGCTCTCGTGGTTT+TGG | 0.216628 | 4.4:-20528253 | MS.gene35048:CDS |
| GGTGGTAGTCGTGGAGATTC+TGG | 0.273094 | 4.4:-20527845 | MS.gene35048:CDS |
| AGGGATACATTTGAAAAGTT+TGG | 0.280841 | 4.4:-20528607 | MS.gene35048:CDS |
| GTTCTTCTGGCGGTCGCAGC+AGG | 0.318323 | 4.4:-20527871 | MS.gene35048:CDS |
| AGTGGTGGTGGTGGTCACTA+TGG | 0.339869 | 4.4:-20527914 | MS.gene35048:CDS |
| AGAAATGGAGACCGTTCTTC+TGG | 0.343709 | 4.4:-20527884 | MS.gene35048:CDS |
| AGGGAGTGCCCTAGTGGTGA+AGG | 0.394081 | 4.4:-20527989 | MS.gene35048:CDS |
| CCATATGAACGACGTGGATC+TGG | 0.395444 | 4.4:-20527785 | MS.gene35048:CDS |
| GAACGGTCTCCATTTCTATC+TGG | 0.397184 | 4.4:+20527890 | None:intergenic |
| CAACATCCGATAGAAAGTTA+AGG | 0.426777 | 4.4:-20528627 | MS.gene35048:CDS |
| GTGGTTGTTGACAAATTCTC+TGG | 0.436058 | 4.4:-20528271 | MS.gene35048:CDS |
| GAAAGTAGATATGGTGGAAG+TGG | 0.439807 | 4.4:-20527932 | MS.gene35048:CDS |
| CCAGATCCACGTCGTTCATA+TGG | 0.442836 | 4.4:+20527785 | None:intergenic |
| CACTATGGTCCAGATAGAAA+TGG | 0.454742 | 4.4:-20527899 | MS.gene35048:CDS |
| CGAGATTACCGAGGTGGTCG+AGG | 0.461040 | 4.4:-20528061 | MS.gene35048:CDS |
| GGTGGTAGAGAAAGTAGATA+TGG | 0.473535 | 4.4:-20527941 | MS.gene35048:CDS |
| CTCTATCAACAGTAATAGTT+CGG | 0.474868 | 4.4:+20528158 | None:intergenic |
| ATGAATGGGATAGATTTAGA+TGG | 0.485420 | 4.4:-20528181 | MS.gene35048:CDS |
| AGATATGGTGGAAGTGGTGG+TGG | 0.486452 | 4.4:-20527926 | MS.gene35048:CDS |
| AACATCCGATAGAAAGTTAA+GGG | 0.491433 | 4.4:-20528626 | MS.gene35048:CDS |
| CAAGGATCCTCTAGAGATGA+TGG | 0.492928 | 4.4:-20528124 | MS.gene35048:CDS |
| TCTGGCGGTCGCAGCAGGGA+TGG | 0.500920 | 4.4:-20527866 | MS.gene35048:CDS |
| CGCGATCGCGACCACGCTCT+CGG | 0.506416 | 4.4:+20528092 | None:intergenic |
| TATGGTGGAAGTGGTGGTGG+TGG | 0.507336 | 4.4:-20527923 | MS.gene35048:CDS |
| GGTAGAGAAAGTAGATATGG+TGG | 0.507553 | 4.4:-20527938 | MS.gene35048:CDS |
| AAATTCTCTGGACGCTCTCG+TGG | 0.522134 | 4.4:-20528259 | MS.gene35048:CDS |
| GATGCTATTGATGCTATGAA+TGG | 0.526053 | 4.4:-20528196 | MS.gene35048:CDS |
| TATCGGATGTTGACCAAGCA+AGG | 0.526702 | 4.4:+20528638 | None:intergenic |
| TGTATCCCTTAACTTTCTAT+CGG | 0.530467 | 4.4:+20528621 | None:intergenic |
| TGCTTCAATTGTGGTAAACC+TGG | 0.534286 | 4.4:-20528022 | MS.gene35048:CDS |
| GGGAGTGCCCTAGTGGTGAA+GGG | 0.544084 | 4.4:-20527988 | MS.gene35048:CDS |
| TTCTTCTGGCGGTCGCAGCA+GGG | 0.544328 | 4.4:-20527870 | MS.gene35048:CDS |
| TGGCAAGCTTACAGAGGCCA+AGG | 0.548700 | 4.4:-20528587 | MS.gene35048:intron |
| TGCTGCGACCGCCAGAAGAA+CGG | 0.550061 | 4.4:+20527873 | None:intergenic |
| TATCGTGATCGTGATCGTGC+TGG | 0.552506 | 4.4:-20527809 | MS.gene35048:CDS |
| GGCGGTCGCAGCAGGGATGG+TGG | 0.563764 | 4.4:-20527863 | MS.gene35048:CDS |
| AGCAGGGATGGTGGTAGTCG+TGG | 0.574692 | 4.4:-20527854 | MS.gene35048:CDS |
| CACTCCCTAGCAAAATGACC+AGG | 0.578775 | 4.4:+20528004 | None:intergenic |
| GGTGGTCGAGGATCTAATGA+TGG | 0.580077 | 4.4:-20528049 | MS.gene35048:CDS |
| GGAGTGCCCTAGTGGTGAAG+GGG | 0.582980 | 4.4:-20527987 | MS.gene35048:CDS |
| AGTAGATATGGTGGAAGTGG+TGG | 0.583787 | 4.4:-20527929 | MS.gene35048:CDS |
| GCAGTTTAAAATGTCGGACG+AGG | 0.587416 | 4.4:-20528686 | None:intergenic |
| AATGGAGACCGTTCTTCTGG+CGG | 0.587666 | 4.4:-20527881 | MS.gene35048:CDS |
| ATGCTATTGATGCTATGAAT+GGG | 0.592487 | 4.4:-20528195 | MS.gene35048:CDS |
| TTTGCTAGGGAGTGCCCTAG+TGG | 0.594989 | 4.4:-20527995 | MS.gene35048:CDS |
| GAACGACGTGGATCTGGAGG+CGG | 0.604365 | 4.4:-20527779 | MS.gene35048:CDS |
| ATATGATGAAAAGAAAGCAA+TGG | 0.616878 | 4.4:-20528221 | MS.gene35048:CDS |
| GAGTGCCCTAGTGGTGAAGG+GGG | 0.631815 | 4.4:-20527986 | MS.gene35048:CDS |
| GGTGATCGCTACCGAGAGCG+TGG | 0.633883 | 4.4:-20528103 | MS.gene35048:CDS |
| TCTCTAGAGGATCCTTGTTG+AGG | 0.640001 | 4.4:+20528130 | None:intergenic |
| TATGAACGACGTGGATCTGG+AGG | 0.640937 | 4.4:-20527782 | MS.gene35048:CDS |
| GATAGAGCTCAGCCTCAACA+AGG | 0.641644 | 4.4:-20528142 | MS.gene35048:CDS |
| GCGATCACCATCATCTCTAG+AGG | 0.642537 | 4.4:+20528117 | None:intergenic |
| CATTAGATCCTCGACCACCT+CGG | 0.645981 | 4.4:+20528053 | None:intergenic |
| GATGGAGGATGCTTCAATTG+TGG | 0.663732 | 4.4:-20528031 | MS.gene35048:CDS |
| AAAGTTTGGCAAGCTTACAG+AGG | 0.664669 | 4.4:-20528593 | MS.gene35048:CDS |
| GGTCGAGGATCTAATGATGG+AGG | 0.667781 | 4.4:-20528046 | MS.gene35048:CDS |
| CGTGATCGAGATTACCGAGG+TGG | 0.705905 | 4.4:-20528067 | MS.gene35048:CDS |
| GAACGTGATCGAGATTACCG+AGG | 0.730869 | 4.4:-20528070 | MS.gene35048:CDS |
| GCTGGACCATATGAACGACG+TGG | 0.755617 | 4.4:-20527791 | MS.gene35048:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATGTAATATGATAAAAAA+TGG | - | chr4.4:20528072-20528091 | MS.gene35048:CDS | 15.0% |
| !! | TTACTTGATTTACTAATAAA+AGG | + | chr4.4:20528035-20528054 | None:intergenic | 15.0% |
| !!! | TTTCATTTTATTTTGTGAAA+AGG | - | chr4.4:20528152-20528171 | MS.gene35048:CDS | 15.0% |
| !! | TCTGAACATTATATTTGATT+TGG | - | chr4.4:20528105-20528124 | MS.gene35048:CDS | 20.0% |
| !!! | ATTATATTTGATTTGGAGAA+TGG | - | chr4.4:20528112-20528131 | MS.gene35048:CDS | 20.0% |
| !!! | CTTTTGTTCATTTTTATTTG+AGG | - | chr4.4:20527985-20528004 | MS.gene35048:CDS | 20.0% |
| ! | ATATGATGAAAAGAAAGCAA+TGG | - | chr4.4:20528224-20528243 | MS.gene35048:CDS | 25.0% |
| !!! | AAAGATAAAGTTTGTTGTCT+AGG | + | chr4.4:20527969-20527988 | None:intergenic | 25.0% |
| !!! | CATTTTATTTTGTGAAAAGG+TGG | - | chr4.4:20528155-20528174 | MS.gene35048:CDS | 25.0% |
| AACATCCGATAGAAAGTTAA+GGG | - | chr4.4:20527819-20527838 | MS.gene35048:CDS | 30.0% | |
| AGGGATACATTTGAAAAGTT+TGG | - | chr4.4:20527838-20527857 | MS.gene35048:CDS | 30.0% | |
| ATGAATGGGATAGATTTAGA+TGG | - | chr4.4:20528264-20528283 | MS.gene35048:CDS | 30.0% | |
| ATGCTATTGATGCTATGAAT+GGG | - | chr4.4:20528250-20528269 | MS.gene35048:CDS | 30.0% | |
| CTCTATCAACAGTAATAGTT+CGG | + | chr4.4:20528290-20528309 | None:intergenic | 30.0% | |
| TGTATCCCTTAACTTTCTAT+CGG | + | chr4.4:20527827-20527846 | None:intergenic | 30.0% | |
| ! | ATTTGAGATATTGATCACCT+TGG | + | chr4.4:20527878-20527897 | None:intergenic | 30.0% |
| CAACATCCGATAGAAAGTTA+AGG | - | chr4.4:20527818-20527837 | MS.gene35048:CDS | 35.0% | |
| GATGCTATTGATGCTATGAA+TGG | - | chr4.4:20528249-20528268 | MS.gene35048:CDS | 35.0% | |
| TACAGCATAAACCAACTTCT+AGG | + | chr4.4:20527933-20527952 | None:intergenic | 35.0% | |
| TCATGTTTGTACCTAGAAGT+TGG | - | chr4.4:20527919-20527938 | MS.gene35048:CDS | 35.0% | |
| !! | GATGAGTATCGTTGTTTTGT+TGG | - | chr4.4:20527781-20527800 | MS.gene35048:CDS | 35.0% |
| !! | TAAACCTGGTCATTTTGCTA+GGG | - | chr4.4:20528437-20528456 | MS.gene35048:intron | 35.0% |
| AAAGTTTGGCAAGCTTACAG+AGG | - | chr4.4:20527852-20527871 | MS.gene35048:CDS | 40.0% | |
| CACTATGGTCCAGATAGAAA+TGG | - | chr4.4:20528546-20528565 | MS.gene35048:intron | 40.0% | |
| GGTAGAGAAAGTAGATATGG+TGG | - | chr4.4:20528507-20528526 | MS.gene35048:intron | 40.0% | |
| GGTGGTAGAGAAAGTAGATA+TGG | - | chr4.4:20528504-20528523 | MS.gene35048:intron | 40.0% | |
| GTGGTTGTTGACAAATTCTC+TGG | - | chr4.4:20528174-20528193 | MS.gene35048:CDS | 40.0% | |
| TGCTTCAATTGTGGTAAACC+TGG | - | chr4.4:20528423-20528442 | MS.gene35048:intron | 40.0% | |
| ! | GAAAGTAGATATGGTGGAAG+TGG | - | chr4.4:20528513-20528532 | MS.gene35048:intron | 40.0% |
| !! | GAGTATCGTTGTTTTGTTGG+TGG | - | chr4.4:20527784-20527803 | MS.gene35048:CDS | 40.0% |
| !! | GTAAACCTGGTCATTTTGCT+AGG | - | chr4.4:20528436-20528455 | MS.gene35048:intron | 40.0% |
| AGAAATGGAGACCGTTCTTC+TGG | - | chr4.4:20528561-20528580 | MS.gene35048:intron | 45.0% | |
| GAACGGTCTCCATTTCTATC+TGG | + | chr4.4:20528558-20528577 | None:intergenic | 45.0% | |
| GATGGAGGATGCTTCAATTG+TGG | - | chr4.4:20528414-20528433 | MS.gene35048:intron | 45.0% | |
| TATCGGATGTTGACCAAGCA+AGG | + | chr4.4:20527810-20527829 | None:intergenic | 45.0% | |
| ! | AGTAGATATGGTGGAAGTGG+TGG | - | chr4.4:20528516-20528535 | MS.gene35048:intron | 45.0% |
| ! | CAAGGATCCTCTAGAGATGA+TGG | - | chr4.4:20528321-20528340 | MS.gene35048:intron | 45.0% |
| ! | TCTCTAGAGGATCCTTGTTG+AGG | + | chr4.4:20528318-20528337 | None:intergenic | 45.0% |
| AAATTCTCTGGACGCTCTCG+TGG | - | chr4.4:20528186-20528205 | MS.gene35048:CDS | 50.0% | |
| AATGGAGACCGTTCTTCTGG+CGG | - | chr4.4:20528564-20528583 | MS.gene35048:intron | 50.0% | |
| CACTCCCTAGCAAAATGACC+AGG | + | chr4.4:20528444-20528463 | None:intergenic | 50.0% | |
| CATTAGATCCTCGACCACCT+CGG | + | chr4.4:20528395-20528414 | None:intergenic | 50.0% | |
| CCAGATCCACGTCGTTCATA+TGG | + | chr4.4:20528663-20528682 | None:intergenic | 50.0% | |
| CCATATGAACGACGTGGATC+TGG | - | chr4.4:20528660-20528679 | MS.gene35048:CDS | 50.0% | |
| GAACGTGATCGAGATTACCG+AGG | - | chr4.4:20528375-20528394 | MS.gene35048:intron | 50.0% | |
| GATAGAGCTCAGCCTCAACA+AGG | - | chr4.4:20528303-20528322 | MS.gene35048:intron | 50.0% | |
| GCGATCACCATCATCTCTAG+AGG | + | chr4.4:20528331-20528350 | None:intergenic | 50.0% | |
| GGTCGAGGATCTAATGATGG+AGG | - | chr4.4:20528399-20528418 | MS.gene35048:intron | 50.0% | |
| GGTGGTCGAGGATCTAATGA+TGG | - | chr4.4:20528396-20528415 | MS.gene35048:intron | 50.0% | |
| TATCGTGATCGTGATCGTGC+TGG | - | chr4.4:20528636-20528655 | MS.gene35048:CDS | 50.0% | |
| TATGAACGACGTGGATCTGG+AGG | - | chr4.4:20528663-20528682 | MS.gene35048:CDS | 50.0% | |
| ! | AGATATGGTGGAAGTGGTGG+TGG | - | chr4.4:20528519-20528538 | MS.gene35048:intron | 50.0% |
| !!! | GTTTTGTTGGTGGCCTTGCT+TGG | - | chr4.4:20527794-20527813 | MS.gene35048:CDS | 50.0% |
| CGTGATCGAGATTACCGAGG+TGG | - | chr4.4:20528378-20528397 | MS.gene35048:intron | 55.0% | |
| CTAGTGGTGAAGGGGGAAGA+GGG | - | chr4.4:20528466-20528485 | MS.gene35048:intron | 55.0% | |
| CTCTTCCCCCTTCACCACTA+GGG | + | chr4.4:20528467-20528486 | None:intergenic | 55.0% | |
| GCTGGACCATATGAACGACG+TGG | - | chr4.4:20528654-20528673 | MS.gene35048:CDS | 55.0% | |
| GGTGGTAGTCGTGGAGATTC+TGG | - | chr4.4:20528600-20528619 | MS.gene35048:CDS | 55.0% | |
| TAGTGGTGAAGGGGGAAGAG+GGG | - | chr4.4:20528467-20528486 | MS.gene35048:intron | 55.0% | |
| TGGCAAGCTTACAGAGGCCA+AGG | - | chr4.4:20527858-20527877 | MS.gene35048:CDS | 55.0% | |
| ! | TCTGGACGCTCTCGTGGTTT+TGG | - | chr4.4:20528192-20528211 | MS.gene35048:CDS | 55.0% |
| !! | AGTGGTGGTGGTGGTCACTA+TGG | - | chr4.4:20528531-20528550 | MS.gene35048:intron | 55.0% |
| !! | TATGGTGGAAGTGGTGGTGG+TGG | - | chr4.4:20528522-20528541 | MS.gene35048:intron | 55.0% |
| !! | TTTGCTAGGGAGTGCCCTAG+TGG | - | chr4.4:20528450-20528469 | MS.gene35048:intron | 55.0% |
| AGTGGTGAAGGGGGAAGAGG+GGG | - | chr4.4:20528468-20528487 | MS.gene35048:intron | 60.0% | |
| CCTAGTGGTGAAGGGGGAAG+AGG | - | chr4.4:20528465-20528484 | MS.gene35048:intron | 60.0% | |
| CCTCTTCCCCCTTCACCACT+AGG | + | chr4.4:20528468-20528487 | None:intergenic | 60.0% | |
| CGAGATTACCGAGGTGGTCG+AGG | - | chr4.4:20528384-20528403 | MS.gene35048:intron | 60.0% | |
| GAACGACGTGGATCTGGAGG+CGG | - | chr4.4:20528666-20528685 | MS.gene35048:CDS | 60.0% | |
| GAGTGCCCTAGTGGTGAAGG+GGG | - | chr4.4:20528459-20528478 | MS.gene35048:intron | 60.0% | |
| TGCTGCGACCGCCAGAAGAA+CGG | + | chr4.4:20528575-20528594 | None:intergenic | 60.0% | |
| TTCTTCTGGCGGTCGCAGCA+GGG | - | chr4.4:20528575-20528594 | MS.gene35048:intron | 60.0% | |
| ! | AGCAGGGATGGTGGTAGTCG+TGG | - | chr4.4:20528591-20528610 | MS.gene35048:CDS | 60.0% |
| ! | GGAGTGCCCTAGTGGTGAAG+GGG | - | chr4.4:20528458-20528477 | MS.gene35048:intron | 60.0% |
| !! | AGGGAGTGCCCTAGTGGTGA+AGG | - | chr4.4:20528456-20528475 | MS.gene35048:intron | 60.0% |
| !! | GGGAGTGCCCTAGTGGTGAA+GGG | - | chr4.4:20528457-20528476 | MS.gene35048:intron | 60.0% |
| AGAGGGGGAGGGGGAAGGTA+TGG | - | chr4.4:20528483-20528502 | MS.gene35048:intron | 65.0% | |
| GGTGATCGCTACCGAGAGCG+TGG | - | chr4.4:20528342-20528361 | MS.gene35048:intron | 65.0% | |
| GTGAAGGGGGAAGAGGGGGA+GGG | - | chr4.4:20528472-20528491 | MS.gene35048:intron | 65.0% | |
| GTTCTTCTGGCGGTCGCAGC+AGG | - | chr4.4:20528574-20528593 | MS.gene35048:intron | 65.0% | |
| TGAAGGGGGAAGAGGGGGAG+GGG | - | chr4.4:20528473-20528492 | MS.gene35048:intron | 65.0% | |
| CGCGATCGCGACCACGCTCT+CGG | + | chr4.4:20528356-20528375 | None:intergenic | 70.0% | |
| GAAGGGGGAAGAGGGGGAGG+GGG | - | chr4.4:20528474-20528493 | MS.gene35048:intron | 70.0% | |
| GGTGAAGGGGGAAGAGGGGG+AGG | - | chr4.4:20528471-20528490 | MS.gene35048:intron | 70.0% | |
| TCTGGCGGTCGCAGCAGGGA+TGG | - | chr4.4:20528579-20528598 | MS.gene35048:intron | 70.0% | |
| ! | GGGGGAGGGGGAAGGTATGG+TGG | - | chr4.4:20528486-20528505 | MS.gene35048:intron | 70.0% |
| GGCGGTCGCAGCAGGGATGG+TGG | - | chr4.4:20528582-20528601 | MS.gene35048:intron | 75.0% | |
| GGGGAAGAGGGGGAGGGGGA+AGG | - | chr4.4:20528478-20528497 | MS.gene35048:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 20527769 | 20528698 | 20527769 | ID=MS.gene35048 |
| chr4.4 | mRNA | 20527769 | 20528698 | 20527769 | ID=MS.gene35048.t1;Parent=MS.gene35048 |
| chr4.4 | exon | 20528588 | 20528698 | 20528588 | ID=MS.gene35048.t1.exon1;Parent=MS.gene35048.t1 |
| chr4.4 | CDS | 20528588 | 20528698 | 20528588 | ID=cds.MS.gene35048.t1;Parent=MS.gene35048.t1 |
| chr4.4 | exon | 20527769 | 20528293 | 20527769 | ID=MS.gene35048.t1.exon2;Parent=MS.gene35048.t1 |
| chr4.4 | CDS | 20527769 | 20528293 | 20527769 | ID=cds.MS.gene35048.t1;Parent=MS.gene35048.t1 |
| Gene Sequence |
| Protein sequence |
