AlfalfaGEDB | MS.gene43587

M. sativa cultivar XinJiangDaYe / MS.gene43587

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0016787 GO:0016825 GO:0017171 GO:0019538 GO:0043170 GO:0044238 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43587.t1	XP_003593861.1	98.1	53	1	0	1	53	386	438	1.50E-23	117.9

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43587.t1	O64811	77.4	53	12	0	1	53	359	411	1.4e-19	95.9

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43587.t1	G7ILY5	98.1	53	1	0	1	53	386	438	1.1e-23	117.9

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049297	MS.gene43587	0.803239	3.83E-49	-1.69E-46
MS.gene049351	MS.gene43587	0.808525	2.97E-50	-1.69E-46
MS.gene049491	MS.gene43587	0.809539	1.80E-50	-1.69E-46
MS.gene049681	MS.gene43587	0.815118	1.09E-51	-1.69E-46
MS.gene049758	MS.gene43587	0.87662	1.21E-68	-1.69E-46
MS.gene050099	MS.gene43587	0.813623	2.33E-51	-1.69E-46
MS.gene050128	MS.gene43587	0.833513	5.11E-56	-1.69E-46
MS.gene050226	MS.gene43587	0.815036	1.14E-51	-1.69E-46
MS.gene050227	MS.gene43587	0.807173	5.75E-50	-1.69E-46
MS.gene050228	MS.gene43587	0.801613	8.29E-49	-1.69E-46
MS.gene050301	MS.gene43587	0.867182	1.65E-65	-1.69E-46
MS.gene050397	MS.gene43587	0.822168	2.74E-53	-1.69E-46
MS.gene050558	MS.gene43587	0.807242	5.56E-50	-1.69E-46
MS.gene050623	MS.gene43587	-0.810118	1.35E-50	-1.69E-46
MS.gene050642	MS.gene43587	0.80577	1.14E-49	-1.69E-46
MS.gene050762	MS.gene43587	0.83917	1.86E-57	-1.69E-46
MS.gene050763	MS.gene43587	0.841136	5.71E-58	-1.69E-46
MS.gene05101	MS.gene43587	0.834133	3.57E-56	-1.69E-46
MS.gene051471	MS.gene43587	0.812864	3.42E-51	-1.69E-46
MS.gene051662	MS.gene43587	0.807948	3.94E-50	-1.69E-46
MS.gene051663	MS.gene43587	0.847924	8.50E-60	-1.69E-46
MS.gene051860	MS.gene43587	0.847383	1.20E-59	-1.69E-46
MS.gene051983	MS.gene43587	0.809743	1.63E-50	-1.69E-46
MS.gene052077	MS.gene43587	0.814164	1.77E-51	-1.69E-46
MS.gene052078	MS.gene43587	0.819563	1.09E-52	-1.69E-46
MS.gene052178	MS.gene43587	0.860951	1.44E-63	-1.69E-46
MS.gene052188	MS.gene43587	0.825745	3.97E-54	-1.69E-46
MS.gene052207	MS.gene43587	0.801757	7.74E-49	-1.69E-46
MS.gene052253	MS.gene43587	0.816185	6.30E-52	-1.69E-46
MS.gene052310	MS.gene43587	0.815706	8.06E-52	-1.69E-46
MS.gene052326	MS.gene43587	0.817767	2.78E-52	-1.69E-46
MS.gene052340	MS.gene43587	0.830338	3.11E-55	-1.69E-46
MS.gene053557	MS.gene43587	0.83174	1.41E-55	-1.69E-46
MS.gene053811	MS.gene43587	0.818821	1.60E-52	-1.69E-46
MS.gene053836	MS.gene43587	0.874559	6.14E-68	-1.69E-46
MS.gene053928	MS.gene43587	0.824338	8.52E-54	-1.69E-46
MS.gene054010	MS.gene43587	0.825203	5.33E-54	-1.69E-46
MS.gene054011	MS.gene43587	0.8457	3.45E-59	-1.69E-46
MS.gene054012	MS.gene43587	0.841354	5.00E-58	-1.69E-46
MS.gene054013	MS.gene43587	0.840635	7.72E-58	-1.69E-46
MS.gene054123	MS.gene43587	0.824558	7.56E-54	-1.69E-46
MS.gene054214	MS.gene43587	0.805718	1.17E-49	-1.69E-46
MS.gene054349	MS.gene43587	0.802851	4.61E-49	-1.69E-46
MS.gene054379	MS.gene43587	0.825518	4.49E-54	-1.69E-46
MS.gene05455	MS.gene43587	0.813149	2.96E-51	-1.69E-46
MS.gene054930	MS.gene43587	0.822359	2.47E-53	-1.69E-46
MS.gene054942	MS.gene43587	0.813817	2.11E-51	-1.69E-46
MS.gene055277	MS.gene43587	0.867353	1.46E-65	-1.69E-46
MS.gene055390	MS.gene43587	0.821699	3.51E-53	-1.69E-46
MS.gene055422	MS.gene43587	0.865834	4.43E-65	-1.69E-46
MS.gene055428	MS.gene43587	0.862303	5.58E-64	-1.69E-46
MS.gene055604	MS.gene43587	0.842663	2.25E-58	-1.69E-46
MS.gene055712	MS.gene43587	0.811963	5.38E-51	-1.69E-46
MS.gene056191	MS.gene43587	0.809412	1.92E-50	-1.69E-46
MS.gene056314	MS.gene43587	0.818731	1.68E-52	-1.69E-46
MS.gene056410	MS.gene43587	0.809806	1.58E-50	-1.69E-46
MS.gene056612	MS.gene43587	0.825075	5.71E-54	-1.69E-46
MS.gene056875	MS.gene43587	0.818969	1.49E-52	-1.69E-46
MS.gene056902	MS.gene43587	0.810101	1.36E-50	-1.69E-46
MS.gene056979	MS.gene43587	0.810548	1.09E-50	-1.69E-46
MS.gene05702	MS.gene43587	0.857566	1.50E-62	-1.69E-46
MS.gene057121	MS.gene43587	0.811273	7.60E-51	-1.69E-46
MS.gene057245	MS.gene43587	0.807294	5.42E-50	-1.69E-46
MS.gene05733	MS.gene43587	0.817071	3.99E-52	-1.69E-46
MS.gene057439	MS.gene43587	0.810714	1.00E-50	-1.69E-46
MS.gene057469	MS.gene43587	0.80295	4.40E-49	-1.69E-46
MS.gene057929	MS.gene43587	0.807703	4.44E-50	-1.69E-46
MS.gene058002	MS.gene43587	0.844825	5.95E-59	-1.69E-46
MS.gene05806	MS.gene43587	0.83678	7.66E-57	-1.69E-46
MS.gene05811	MS.gene43587	0.880185	6.76E-70	-1.69E-46
MS.gene058142	MS.gene43587	0.820908	5.35E-53	-1.69E-46
MS.gene058276	MS.gene43587	0.805977	1.03E-49	-1.69E-46
MS.gene058660	MS.gene43587	0.807914	4.00E-50	-1.69E-46
MS.gene058845	MS.gene43587	0.815253	1.02E-51	-1.69E-46
MS.gene05907	MS.gene43587	0.86054	1.92E-63	-1.69E-46
MS.gene059294	MS.gene43587	0.81054	1.10E-50	-1.69E-46
MS.gene059518	MS.gene43587	0.859781	3.26E-63	-1.69E-46
MS.gene059597	MS.gene43587	0.8409	6.58E-58	-1.69E-46
MS.gene059676	MS.gene43587	0.812134	4.94E-51	-1.69E-46
MS.gene059688	MS.gene43587	0.812789	3.55E-51	-1.69E-46
MS.gene059692	MS.gene43587	0.82933	5.47E-55	-1.69E-46
MS.gene059695	MS.gene43587	0.828009	1.14E-54	-1.69E-46
MS.gene05984	MS.gene43587	0.862065	6.60E-64	-1.69E-46
MS.gene059894	MS.gene43587	0.855084	8.00E-62	-1.69E-46
MS.gene059974	MS.gene43587	0.812053	5.14E-51	-1.69E-46
MS.gene060005	MS.gene43587	0.811027	8.60E-51	-1.69E-46
MS.gene060084	MS.gene43587	0.802606	5.18E-49	-1.69E-46
MS.gene06037	MS.gene43587	0.841837	3.73E-58	-1.69E-46
MS.gene060476	MS.gene43587	0.846413	2.21E-59	-1.69E-46
MS.gene060495	MS.gene43587	0.805123	1.55E-49	-1.69E-46
MS.gene060569	MS.gene43587	0.805471	1.31E-49	-1.69E-46
MS.gene061049	MS.gene43587	0.85801	1.10E-62	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 15 sgRNAs with CRISPR-Local

Find 20 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TGACATTTCTATTCCATTCT+TGG	0.177100	2.2:+66012162	MS.gene43587:CDS
CATACAGAGGGCCAAGTTGC+AGG	0.331211	2.2:+66012244	MS.gene43587:CDS
ACTACTCCATTGTTGATGAT+TGG	0.342996	2.2:+66012212	MS.gene43587:CDS
ACACAAGGACATACTCGAAT+GGG	0.501906	2.2:+66012581	MS.gene43587:CDS
ACTCCATTGTTGATGATTGG+AGG	0.510049	2.2:+66012215	MS.gene43587:CDS
TATGTGAATACCCTGCAACT+TGG	0.536092	2.2:-66012255	None:intergenic
TTGTTGATGATTGGAGGCAG+TGG	0.574543	2.2:+66012221	MS.gene43587:CDS
CATTCTTGGATACAAAAGCA+TGG	0.590619	2.2:+66012176	MS.gene43587:CDS
ATACAGAGGGCCAAGTTGCA+GGG	0.592654	2.2:+66012245	MS.gene43587:CDS
TACACAAGGACATACTCGAA+TGG	0.594245	2.2:+66012580	MS.gene43587:CDS
TGGAGGCAGTGGCATACAGA+GGG	0.634579	2.2:+66012232	MS.gene43587:CDS
CTGCCTCCAATCATCAACAA+TGG	0.635469	2.2:-66012218	None:intergenic
GATGACATTTGCAACTGTGA+AGG	0.656552	2.2:+66012603	MS.gene43587:CDS
TTGGAGGCAGTGGCATACAG+AGG	0.686415	2.2:+66012231	MS.gene43587:CDS
TGTGCAAGTATAGATACACA+AGG	0.695426	2.2:+66012566	MS.gene43587:intron

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATATCTTATAAATAGTTGAA+GGG	-	chr2.2:66012418-66012437	None:intergenic	15.0%
!!	TATATCTTATAAATAGTTGA+AGG	-	chr2.2:66012419-66012438	None:intergenic	15.0%
!!!	TTCTTTTTTCTTTTCTGAAA+TGG	+	chr2.2:66012335-66012354	MS.gene43587:intron	20.0%
!	TCAACAAACGTTAATGTATT+TGG	+	chr2.2:66012453-66012472	MS.gene43587:intron	25.0%
	TGACATTTCTATTCCATTCT+TGG	+	chr2.2:66012162-66012181	MS.gene43587:CDS	30.0%
	CATTCTTGGATACAAAAGCA+TGG	+	chr2.2:66012176-66012195	MS.gene43587:CDS	35.0%
	TGTGCAAGTATAGATACACA+AGG	+	chr2.2:66012566-66012585	MS.gene43587:intron	35.0%
!	CATGCTTTTGTATCCAAGAA+TGG	-	chr2.2:66012178-66012197	None:intergenic	35.0%
!!	ACTACTCCATTGTTGATGAT+TGG	+	chr2.2:66012212-66012231	MS.gene43587:CDS	35.0%
	ACACAAGGACATACTCGAAT+GGG	+	chr2.2:66012581-66012600	MS.gene43587:CDS	40.0%
	TACACAAGGACATACTCGAA+TGG	+	chr2.2:66012580-66012599	MS.gene43587:CDS	40.0%
	TATGTGAATACCCTGCAACT+TGG	-	chr2.2:66012258-66012277	None:intergenic	40.0%
	TGACATTTGCAACTGTGAAG+TGG	+	chr2.2:66012605-66012624	MS.gene43587:CDS	40.0%
!!	ACTCCATTGTTGATGATTGG+AGG	+	chr2.2:66012215-66012234	MS.gene43587:CDS	40.0%
	CTGCCTCCAATCATCAACAA+TGG	-	chr2.2:66012221-66012240	None:intergenic	45.0%
!!	TTGTTGATGATTGGAGGCAG+TGG	+	chr2.2:66012221-66012240	MS.gene43587:CDS	45.0%
	ATACAGAGGGCCAAGTTGCA+GGG	+	chr2.2:66012245-66012264	MS.gene43587:CDS	50.0%
	CATACAGAGGGCCAAGTTGC+AGG	+	chr2.2:66012244-66012263	MS.gene43587:CDS	55.0%
	TGGAGGCAGTGGCATACAGA+GGG	+	chr2.2:66012232-66012251	MS.gene43587:CDS	55.0%
	TTGGAGGCAGTGGCATACAG+AGG	+	chr2.2:66012231-66012250	MS.gene43587:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr2.2	gene	66012153	66012624	66012153	ID=MS.gene43587
chr2.2	mRNA	66012153	66012624	66012153	ID=MS.gene43587.t1;Parent=MS.gene43587
chr2.2	exon	66012153	66012266	66012153	ID=MS.gene43587.t1.exon1;Parent=MS.gene43587.t1
chr2.2	CDS	66012153	66012266	66012153	ID=cds.MS.gene43587.t1;Parent=MS.gene43587.t1
chr2.2	exon	66012579	66012624	66012579	ID=MS.gene43587.t1.exon2;Parent=MS.gene43587.t1
chr2.2	CDS	66012579	66012624	66012579	ID=cds.MS.gene43587.t1;Parent=MS.gene43587.t1

Gene Sequence

>MS.gene43587

TGGCGATCATGACATTTCTATTCCATTCTTGGATACAAAAGCATGGATAAAATCTTTAAACTACTCCATTGTTGATGATTGGAGGCAGTGGCATACAGAGGGCCAAGTTGCAGGGTATTCACATAAATTTTACTAGAATTATTCTATTTTTTCTTTAAGAAAGTGTTGCTAACATTTTTTTTTTCTTTTTTCTTTTCTGAAATGGTCTTTCTTAAAGTAAGAGTTTACAGTTTAATTCAAAAAGTGATCAATAATTTTTACTCCCTTCAACTATTTATAAGATATATTATATATATTTAGTCAACAAACGTTAATGTATTTGGTTCAAAATTTGAATCAAATATATCAAATTTTGTTGATTCAAATGTCATCTATCTAAAAAAAACAAATTAATTTAATATTTATTTTATTTTTGTGCAAGTATAGATACACAAGGACATACTCGAATGGGATGACATTTGCAACTGTGAAG

Protein sequence

>MS.gene43587.t1

WRSUHFYSILGYKSMDKIFKLLHCUULEAVAYRGPSCRIHKDILEWDDICNCE