AlfalfaGEDB | MS.gene48807

M. sativa cultivar XinJiangDaYe / MS.gene48807

KEGG: K00430
GO: GO:0003674 GO:0003824 GO:0004601 GO:0005488 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0016209 GO:0016491 GO:0016684 GO:0016999 GO:0017001 GO:0017144 GO:0020037 GO:0042737 GO:0042743 GO:0042744 GO:0044237 GO:0044248 GO:0046906 GO:0048037 GO:0050896 GO:0051186 GO:0051187 GO:0055114 GO:0072593 GO:0097159 GO:1901363
PFAM: PF00141.26

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48807.t1	XP_013455188.1	94.9	313	16	0	1	313	9	321	1.90E-166	595.1

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48807.t1	Q9FLC0	62.6	297	107	3	19	313	30	324	4.1e-98	359.4

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48807.t1	A0A072UIE4	94.9	313	16	0	1	313	9	321	1.3e-166	595.1

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene48807	-0.805883	1.08E-49	-1.69E-46
MS.gene04926	MS.gene48807	0.804192	2.43E-49	-1.69E-46
MS.gene04932	MS.gene48807	0.805828	1.11E-49	-1.69E-46
MS.gene049549	MS.gene48807	0.846139	2.62E-59	-1.69E-46
MS.gene049634	MS.gene48807	0.808389	3.17E-50	-1.69E-46
MS.gene049805	MS.gene48807	-0.802612	5.17E-49	-1.69E-46
MS.gene050095	MS.gene48807	0.805075	1.59E-49	-1.69E-46
MS.gene050096	MS.gene48807	0.814476	1.51E-51	-1.69E-46
MS.gene050380	MS.gene48807	0.81947	1.14E-52	-1.69E-46
MS.gene050381	MS.gene48807	0.807435	5.06E-50	-1.69E-46

Showing 1 to 10 of 74 entries

Previous1 2 3 4 5…8Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48807.t1	MTR_4g029170	94.888	313	16	0	1	313	9	321	0.0	617
MS.gene48807.t1	MTR_4g029180	87.821	312	38	0	2	313	10	321	0.0	549
MS.gene48807.t1	MTR_5g074710	61.514	317	116	4	1	313	7	321	1.84e-137	392
MS.gene48807.t1	MTR_5g074740	61.587	315	115	4	3	313	9	321	2.51e-136	389
MS.gene48807.t1	MTR_5g074860	60.883	317	115	5	3	312	10	324	4.91e-136	389
MS.gene48807.t1	MTR_5g074760	60.317	315	119	4	3	313	9	321	7.61e-135	385
MS.gene48807.t1	MTR_5g074970	60.759	316	120	2	1	313	12	326	5.88e-132	378
MS.gene48807.t1	MTR_3g466200	59.873	314	122	3	3	313	8	320	5.33e-129	370
MS.gene48807.t1	MTR_3g467600	58.360	317	126	4	2	313	9	324	2.49e-125	361
MS.gene48807.t1	MTR_3g072190	58.095	315	127	3	2	313	6	318	6.55e-124	357

Showing 1 to 10 of 139 entries

Previous1 2 3 4 5…14Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48807.t1	AT5G05340	62.626	297	107	3	19	313	30	324	2.31e-130	374
MS.gene48807.t1	AT1G14550	54.603	315	139	4	2	313	8	321	3.38e-115	335
MS.gene48807.t1	AT5G58400	53.503	314	143	2	2	313	13	325	1.07e-113	332
MS.gene48807.t1	AT5G58390	55.128	312	137	2	4	313	6	316	1.60e-112	328
MS.gene48807.t1	AT4G36430	53.465	303	131	4	19	313	30	330	3.25e-111	326
MS.gene48807.t1	AT2G18150	53.135	303	132	4	19	313	36	336	9.80e-111	325
MS.gene48807.t1	AT2G18140	53.135	303	132	4	19	313	35	335	3.85e-108	318
MS.gene48807.t1	AT1G14540	51.746	315	148	4	1	313	3	315	7.18e-108	317
MS.gene48807.t1	AT5G06720	49.530	319	150	4	4	313	17	333	1.20e-105	311
MS.gene48807.t1	AT3G50990	50.000	310	145	4	12	313	34	341	2.57e-105	311

Showing 1 to 10 of 88 entries

Previous1 2 3 4 5…9Next

Find 53 sgRNAs with CRISPR-Local

Find 116 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAAGGGCTTCTTCATT+CGG	0.378097	4.4:+73710579	MS.gene48807:CDS
AAAGACCTCGTTGCCCTATC+TGG	0.286567	4.4:+73710364	MS.gene48807:CDS
AAAGACTGAATGATGGTCCG+GGG	0.721286	4.4:-73710300	None:intergenic
AAGCCACTTACTGGGAGTCA+AGG	0.611405	4.4:+73710715	MS.gene48807:CDS
AATAGTGTGTGCTCCAGATA+GGG	0.548473	4.4:-73710377	None:intergenic
AATATCTTGATGATCTTAAT+TGG	0.198524	4.4:-73710764	None:intergenic
ACAGTCTAGAGCTGCAAGGT+TGG	0.528477	4.4:-73710509	None:intergenic
AGAAAGACTGAATGATGGTC+CGG	0.452732	4.4:-73710302	None:intergenic
AGCTCTAGACTGTGTTACAC+CGG	0.650454	4.4:+73710519	MS.gene48807:CDS
AGGGCTTCTTCATTCGGATC+AGG	0.466116	4.4:+73710585	MS.gene48807:CDS

Showing 1 to 10 of 53 entries

Previous1 2 3 4 5 6Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ACAAACCCTTATAAGCAAAT+TGG	+	chr4.4:73708572-73708591	MS.gene48807:intron	30.0%
ATCAAAAATTTCGACAACCA+AGG	+	chr4.4:73710331-73710350	MS.gene48807:CDS	30.0%
ATTTGATGTGTCATATTACC+AGG	+	chr4.4:73710546-73710565	MS.gene48807:CDS	30.0%
CAGGAACTGATTAAAAAGAA+AGG	+	chr4.4:73710565-73710584	MS.gene48807:CDS	30.0%
GAAATATTAAGCCACTTACT+GGG	+	chr4.4:73710707-73710726	MS.gene48807:CDS	30.0%
GCGAAATCTATGATTAAGAT+GGG	+	chr4.4:73710685-73710704	MS.gene48807:CDS	30.0%
TAAAACAGAATTAGTCAGCA+TGG	+	chr4.4:73709503-73709522	MS.gene48807:intron	30.0%
TCGGATCAGGAATTATTAAA+TGG	+	chr4.4:73710598-73710617	MS.gene48807:CDS	30.0%
TGAATAATATATGCAAGGTC+CGG	+	chr4.4:73708816-73708835	MS.gene48807:intron	30.0%
TGCGAAATCTATGATTAAGA+TGG	+	chr4.4:73710684-73710703	MS.gene48807:CDS	30.0%

Showing 1 to 10 of 116 entries

Previous1 2 3 4 5…12Next

Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	73708266	73710771	73708266	ID=MS.gene48807
chr4.4	mRNA	73708266	73710771	73708266	ID=MS.gene48807.t1;Parent=MS.gene48807
chr4.4	exon	73708266	73708457	73708266	ID=MS.gene48807.t1.exon1;Parent=MS.gene48807.t1
chr4.4	CDS	73708266	73708457	73708266	ID=cds.MS.gene48807.t1;Parent=MS.gene48807.t1
chr4.4	exon	73709244	73709438	73709244	ID=MS.gene48807.t1.exon2;Parent=MS.gene48807.t1
chr4.4	CDS	73709244	73709438	73709244	ID=cds.MS.gene48807.t1;Parent=MS.gene48807.t1
chr4.4	exon	73710217	73710771	73710217	ID=MS.gene48807.t1.exon3;Parent=MS.gene48807.t1
chr4.4	CDS	73710217	73710771	73710217	ID=cds.MS.gene48807.t1;Parent=MS.gene48807.t1

Gene Sequence

>MS.gene48807

ATGTTCTTCCTCGCAATAGTGTTAGCATCTCTTGCAACAACAACATTGTCAGCACTCACAACAAATTACTATGACTACACATGCCCTAATGCTTTGAGCACTATTAGAAGTGTTGTTAGAGCTGCAGTTCAAAAAGAGAACCGTATGGGTGGCTCTTTACTACGCTTGCATTTTCATGACTGCTTTGTTAACGTAAGATTATCTATCTCTCCATGTGTGTGTGTGTATAGATATAAGTTATTGCTTCAAAACAAAAAATTATTAATTTTGTCGCTAACTATTGCTACTAGAAAAACTAAAGTGAGAACAAACCCTTATAAGCAAATTGGTAGATATCCCAATTTTATTTATATTTTACCAAAACAAAATGAGAAACTAAAATAAGTAGAGGCCAAAGTTATTTATAGATTTTCACTCTATTTGCTCTCTACTTTTTCCTTTCTAATTTTTACTTTTTTTTAGTAGTGATCTATCATTATAGTAATATAGTAACAATTATTATATTATAGTTTAGTTGCTTTTCCAAATCAATCTCAAATGATAAGGATATTGAATAATATATGCAAGGTCCGGGGTTCGAATCCCAGGCACCACAAAAAAATAAATAGTTGATAAATTTATTTAACAATTAATTTAGATATTAATGTGATTGATAATTTGAAAATTGGTCGATAAATAAATTGATACGATAACTAAAAAAGTCAGATTCAAATGTGTTGTTAGACAACAAACATTTCTACTTCACAATTTTCAAATTATCAATCACATTAATATCTAAATTAATTGTTAAATAAATTTATCAAACATTTGAATCTGATTTTTTTAGTTATCGTAACAATTTATTTATCGACCAATTTTCAAATTATCAATCACATTAATATCTAAATTAATAAAAAACTTTTATAGCTTATATATGACGTGTTAGTATTAATTATTAAGTGATAGTTTGTTTTTATTTTTATTTTTATGGTGATTTAGGGTTGTGATGGTTCAATTCTTCTGGACTCTACACCTTCCATGGACAGTGAAAAAAATGCAAATCCAAATATAAATTCAACTAGAGGATTTGAAGTGGTTGATGAGATTAAGGAAGCTGTTGATAAAGCATGTGGAAAACCAGTTGTTTCTTGTGCAGACATATTGGCTGTAGCTGCAAGAGACTCTGTCGTTGCGGTTAGTAATAATAATCTTATAAGTATATATCTTTTTTATTTTATTTTGAACTATTCAGTAATTTTAAAACAGAATTAGTCAGCATGGATAAAATAAAGTTAATAAAAGGAAGTTGGTAAGAGTTAAGCTTTTATATATGAAATTTTCTAACTTATCTTTACTCGGTTTAAGTTAACACAAGTATACCACCAACTTTGAATATATCAAAATTAAAAGGAAGGTGCTAATAAATTTATTTTATTGATATGACTGACTCGATCTTACTTATATTAGTATTTGCTATTTGAATAAATCAAAGTGAAGCTACACATTTCGTTATGTAAAAGAATAGGAGAACGCTAAACAATGTCCTCAGGGTATTGGTTAAGCAATCAAAACAAATAACTTTTTTATAAAAAGTAATGTAATTATTACTTAATCAAAAATCAAAACTTATATTTCAAGACAAATTTTCTATGTATTGTTTCATTAACTATTGCCCTAACAAGACCCTAAATAATATCACAAGATAATTAAGATTTATTTGATGGATTTACATCAACTAGCACAACAAATTATGTTCACTGGATCAAGATAGAATTTGTGACCAACTAGTTAGAGACACTCCATGCATGTTTGTTGGTCTTGATTCCTTCTAATGATGTGTATATATTGATTTGGAGTTTTCTCAAATCTTACAAAAACTTCTTTAATATCCAATAACTCAAAGAACAATATCAAAATGTTTTTTGATTAACACGAAAATTAAAACTGAAATTTACAATTATATATGATGCAGTTAGGAGGACCATCATGGAAAGTGCAACTAGGAAGAAGAGACTCAAAGACAGCAAGTCGTGCCGCTGCAGATTCAGGCAACATCCCCGGACCATCATTCAGTCTTTCTCAACTCATCAAAAATTTCGACAACCAAGGCCTAAACGAAAAAGACCTCGTTGCCCTATCTGGAGCACACACTATTGGATTTTCGCGCTGTCTTTTATTTAGAGACCGAATCTACAATGACAAGAACATCGATGCAAACTTCGCAAAACAGCTTCAAGACATTTGTCCTAGAGAAGGAGGAGACTCCAACCTTGCAGCTCTAGACTGTGTTACACCGGCAAAATTTGATGTGTCATATTACCAGGAACTGATTAAAAAGAAAGGGCTTCTTCATTCGGATCAGGAATTATTAAATGGTGATTATACTGGATCGTTGGTTAGAAAATATAGGCGCGATACAAGTTCTTTCTACAACGACTTTGCGAAATCTATGATTAAGATGGGAAATATTAAGCCACTTACTGGGAGTCAAGGTGAAATTCGTTCAAATTGCAGGAGAGCCAATTAA

Protein sequence

>MS.gene48807.t1

MFFLAIVLASLATTTLSALTTNYYDYTCPNALSTIRSVVRAAVQKENRMGGSLLRLHFHDCFVNGCDGSILLDSTPSMDSEKNANPNINSTRGFEVVDEIKEAVDKACGKPVVSCADILAVAARDSVVALGGPSWKVQLGRRDSKTASRAAADSGNIPGPSFSLSQLIKNFDNQGLNEKDLVALSGAHTIGFSRCLLFRDRIYNDKNIDANFAKQLQDICPREGGDSNLAALDCVTPAKFDVSYYQELIKKKGLLHSDQELLNGDYTGSLVRKYRRDTSSFYNDFAKSMIKMGNIKPLTGSQGEIRSNCRRAN