Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50963.t1 | KHN30841.1 | 66 | 94 | 31 | 1 | 1 | 93 | 3 | 96 | 1.60E-18 | 102.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50963.t1 | A0A0B2R8K8 | 66.0 | 94 | 31 | 1 | 1 | 93 | 3 | 96 | 1.1e-18 | 102.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene50963 | 0.820558 | 6.44E-53 | -1.69E-46 |
| MS.gene049173 | MS.gene50963 | 0.835333 | 1.78E-56 | -1.69E-46 |
| MS.gene049217 | MS.gene50963 | 0.833773 | 4.40E-56 | -1.69E-46 |
| MS.gene049222 | MS.gene50963 | 0.822027 | 2.95E-53 | -1.69E-46 |
| MS.gene049285 | MS.gene50963 | 0.889271 | 2.81E-73 | -1.69E-46 |
| MS.gene049320 | MS.gene50963 | 0.863923 | 1.76E-64 | -1.69E-46 |
| MS.gene049614 | MS.gene50963 | 0.80462 | 1.98E-49 | -1.69E-46 |
| MS.gene049805 | MS.gene50963 | 0.80717 | 5.76E-50 | -1.69E-46 |
| MS.gene050163 | MS.gene50963 | 0.892956 | 9.84E-75 | -1.69E-46 |
| MS.gene050165 | MS.gene50963 | 0.879551 | 1.14E-69 | -1.69E-46 |
| MS.gene050333 | MS.gene50963 | 0.858189 | 9.77E-63 | -1.69E-46 |
| MS.gene050504 | MS.gene50963 | 0.839165 | 1.86E-57 | -1.69E-46 |
| MS.gene050518 | MS.gene50963 | 0.849852 | 2.48E-60 | -1.69E-46 |
| MS.gene050612 | MS.gene50963 | 0.84078 | 7.07E-58 | -1.69E-46 |
| MS.gene050675 | MS.gene50963 | 0.817467 | 3.25E-52 | -1.69E-46 |
| MS.gene050699 | MS.gene50963 | 0.841999 | 3.38E-58 | -1.69E-46 |
| MS.gene050767 | MS.gene50963 | 0.856631 | 2.82E-62 | -1.69E-46 |
| MS.gene050770 | MS.gene50963 | 0.859025 | 5.50E-63 | -1.69E-46 |
| MS.gene050772 | MS.gene50963 | 0.82549 | 4.56E-54 | -1.69E-46 |
| MS.gene050986 | MS.gene50963 | 0.826408 | 2.76E-54 | -1.69E-46 |
| MS.gene05100 | MS.gene50963 | 0.8792 | 1.51E-69 | -1.69E-46 |
| MS.gene051228 | MS.gene50963 | 0.848007 | 8.06E-60 | -1.69E-46 |
| MS.gene051551 | MS.gene50963 | 0.8203 | 7.38E-53 | -1.69E-46 |
| MS.gene051666 | MS.gene50963 | 0.805905 | 1.07E-49 | -1.69E-46 |
| MS.gene051810 | MS.gene50963 | 0.873193 | 1.78E-67 | -1.69E-46 |
| MS.gene051949 | MS.gene50963 | 0.857138 | 2.00E-62 | -1.69E-46 |
| MS.gene052271 | MS.gene50963 | 0.8891 | 3.28E-73 | -1.69E-46 |
| MS.gene052290 | MS.gene50963 | 0.846457 | 2.15E-59 | -1.69E-46 |
| MS.gene052379 | MS.gene50963 | 0.843312 | 1.51E-58 | -1.69E-46 |
| MS.gene053009 | MS.gene50963 | 0.819972 | 8.77E-53 | -1.69E-46 |
| MS.gene053104 | MS.gene50963 | 0.815941 | 7.14E-52 | -1.69E-46 |
| MS.gene053213 | MS.gene50963 | 0.85393 | 1.73E-61 | -1.69E-46 |
| MS.gene053286 | MS.gene50963 | 0.854711 | 1.03E-61 | -1.69E-46 |
| MS.gene053322 | MS.gene50963 | 0.866871 | 2.08E-65 | -1.69E-46 |
| MS.gene053632 | MS.gene50963 | 0.845724 | 3.40E-59 | -1.69E-46 |
| MS.gene054376 | MS.gene50963 | 0.828123 | 1.07E-54 | -1.69E-46 |
| MS.gene054600 | MS.gene50963 | 0.826224 | 3.05E-54 | -1.69E-46 |
| MS.gene054642 | MS.gene50963 | 0.889989 | 1.48E-73 | -1.69E-46 |
| MS.gene054802 | MS.gene50963 | 0.813753 | 2.18E-51 | -1.69E-46 |
| MS.gene054803 | MS.gene50963 | 0.812672 | 3.77E-51 | -1.69E-46 |
| MS.gene054804 | MS.gene50963 | 0.816977 | 4.19E-52 | -1.69E-46 |
| MS.gene054954 | MS.gene50963 | 0.857721 | 1.35E-62 | -1.69E-46 |
| MS.gene055212 | MS.gene50963 | 0.816648 | 4.96E-52 | -1.69E-46 |
| MS.gene055254 | MS.gene50963 | 0.822947 | 1.80E-53 | -1.69E-46 |
| MS.gene055362 | MS.gene50963 | 0.849025 | 4.21E-60 | -1.69E-46 |
| MS.gene055397 | MS.gene50963 | 0.87438 | 7.07E-68 | -1.69E-46 |
| MS.gene055499 | MS.gene50963 | 0.86677 | 2.24E-65 | -1.69E-46 |
| MS.gene055502 | MS.gene50963 | 0.835125 | 2.01E-56 | -1.69E-46 |
| MS.gene055636 | MS.gene50963 | 0.824003 | 1.02E-53 | -1.69E-46 |
| MS.gene055638 | MS.gene50963 | 0.838355 | 3.02E-57 | -1.69E-46 |
| MS.gene055647 | MS.gene50963 | 0.82508 | 5.70E-54 | -1.69E-46 |
| MS.gene05592 | MS.gene50963 | 0.834745 | 2.51E-56 | -1.69E-46 |
| MS.gene055956 | MS.gene50963 | -0.83562 | 1.51E-56 | -1.69E-46 |
| MS.gene056083 | MS.gene50963 | 0.818983 | 1.47E-52 | -1.69E-46 |
| MS.gene056374 | MS.gene50963 | 0.853321 | 2.58E-61 | -1.69E-46 |
| MS.gene056510 | MS.gene50963 | 0.807913 | 4.01E-50 | -1.69E-46 |
| MS.gene056657 | MS.gene50963 | 0.87731 | 6.96E-69 | -1.69E-46 |
| MS.gene056692 | MS.gene50963 | 0.808376 | 3.19E-50 | -1.69E-46 |
| MS.gene057129 | MS.gene50963 | 0.87314 | 1.85E-67 | -1.69E-46 |
| MS.gene057246 | MS.gene50963 | 0.823644 | 1.24E-53 | -1.69E-46 |
| MS.gene057416 | MS.gene50963 | 0.8463 | 2.37E-59 | -1.69E-46 |
| MS.gene058019 | MS.gene50963 | 0.820012 | 8.59E-53 | -1.69E-46 |
| MS.gene058419 | MS.gene50963 | 0.868212 | 7.72E-66 | -1.69E-46 |
| MS.gene058544 | MS.gene50963 | 0.813301 | 2.74E-51 | -1.69E-46 |
| MS.gene058723 | MS.gene50963 | 0.833533 | 5.05E-56 | -1.69E-46 |
| MS.gene058773 | MS.gene50963 | 0.835212 | 1.91E-56 | -1.69E-46 |
| MS.gene059022 | MS.gene50963 | 0.84303 | 1.80E-58 | -1.69E-46 |
| MS.gene059029 | MS.gene50963 | 0.850719 | 1.42E-60 | -1.69E-46 |
| MS.gene059536 | MS.gene50963 | 0.801271 | 9.74E-49 | -1.69E-46 |
| MS.gene059677 | MS.gene50963 | 0.884165 | 2.42E-71 | -1.69E-46 |
| MS.gene059718 | MS.gene50963 | 0.828265 | 9.90E-55 | -1.69E-46 |
| MS.gene059756 | MS.gene50963 | 0.800984 | 1.12E-48 | -1.69E-46 |
| MS.gene059858 | MS.gene50963 | 0.84221 | 2.97E-58 | -1.69E-46 |
| MS.gene059960 | MS.gene50963 | 0.864536 | 1.13E-64 | -1.69E-46 |
| MS.gene060703 | MS.gene50963 | 0.808251 | 3.40E-50 | -1.69E-46 |
| MS.gene060728 | MS.gene50963 | 0.817958 | 2.52E-52 | -1.69E-46 |
| MS.gene060762 | MS.gene50963 | 0.806596 | 7.62E-50 | -1.69E-46 |
| MS.gene060804 | MS.gene50963 | 0.806908 | 6.55E-50 | -1.69E-46 |
| MS.gene06092 | MS.gene50963 | 0.806511 | 7.94E-50 | -1.69E-46 |
| MS.gene061150 | MS.gene50963 | 0.86082 | 1.58E-63 | -1.69E-46 |
| MS.gene061200 | MS.gene50963 | 0.862084 | 6.51E-64 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50963.t1 | MTR_3g037750 | 47.126 | 87 | 44 | 2 | 1 | 86 | 1 | 86 | 3.76e-16 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 23 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTGTTTGTGTTCTGTTTC+TGG | 0.051760 | 3.2:-27080211 | MS.gene50963:CDS |
| TTTCAATTTCAAGGGCATTT+TGG | 0.264806 | 3.2:+27078190 | None:intergenic |
| GGTCTTCCAATTGTTGTAAC+AGG | 0.291635 | 3.2:+27078225 | None:intergenic |
| CATGACTTGTTTCAATTTCA+AGG | 0.329598 | 3.2:+27078181 | None:intergenic |
| TGTGTTCCTCCTGGCTATTA+TGG | 0.372312 | 3.2:-27078265 | MS.gene50963:CDS |
| TGTGTCCCTGTTACAACAAT+TGG | 0.425313 | 3.2:-27078231 | MS.gene50963:CDS |
| GCAAAAGATGCTGCTCAGTA+TGG | 0.425821 | 3.2:-27080015 | MS.gene50963:CDS |
| CATCTTCTTGTGCATTGAGA+TGG | 0.446525 | 3.2:+27078352 | None:intergenic |
| ATCTTCTTGTGCATTGAGAT+GGG | 0.464024 | 3.2:+27078353 | None:intergenic |
| AAATGTCTCTGTGTTCCTCC+TGG | 0.478257 | 3.2:-27078274 | MS.gene50963:CDS |
| AGGAGGAACACAGAGACATT+TGG | 0.480481 | 3.2:+27078276 | None:intergenic |
| ATGACTTGTTTCAATTTCAA+GGG | 0.510609 | 3.2:+27078182 | None:intergenic |
| ACTAACCTGAGTGGTGATCA+TGG | 0.521483 | 3.2:+27080173 | None:intergenic |
| GATTTGTTACCATAATAGCC+AGG | 0.572427 | 3.2:+27078256 | None:intergenic |
| GTCTTCCAATTGTTGTAACA+GGG | 0.578624 | 3.2:+27078226 | None:intergenic |
| TCTCAATGCACAAGAAGATG+TGG | 0.608334 | 3.2:-27078349 | MS.gene50963:CDS |
| CATTGCCATGATCACCACTC+AGG | 0.609926 | 3.2:-27080178 | MS.gene50963:intron |
| AACAATTGGAAGACCAAGCG+TGG | 0.618322 | 3.2:-27078217 | MS.gene50963:CDS |
| AACACAAACAAGCTTAGCCA+TGG | 0.629211 | 3.2:+27080221 | None:intergenic |
| TGGTGATCATGGCAATGCTA+AGG | 0.649208 | 3.2:+27080184 | None:intergenic |
| AATTGGAAGACCAAGCGTGG+AGG | 0.716723 | 3.2:-27078214 | MS.gene50963:CDS |
| TTGTTACCATAATAGCCAGG+AGG | 0.723243 | 3.2:+27078259 | None:intergenic |
| TAGGAGGAGACTAACCTGAG+TGG | 0.729040 | 3.2:+27080164 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTATAATTAAATACAG+AGG | - | chr3.2:27078913-27078932 | MS.gene50963:intron | 10.0% |
| !! | TAAAAACTTAGTAAAAAAAA+GGG | - | chr3.2:27079260-27079279 | MS.gene50963:intron | 10.0% |
| !!! | ATTATTCTTTTATTAAGATT+AGG | + | chr3.2:27078321-27078340 | None:intergenic | 10.0% |
| !!! | TTAATTTTGTACATAAAATA+TGG | - | chr3.2:27078611-27078630 | MS.gene50963:intron | 10.0% |
| !! | AAAAAAAGTCTATGTTAAAA+TGG | + | chr3.2:27079020-27079039 | None:intergenic | 15.0% |
| !! | AAAAACTTAGTAAAAAAAAG+GGG | - | chr3.2:27079261-27079280 | MS.gene50963:intron | 15.0% |
| !! | GTAAAAACTTAGTAAAAAAA+AGG | - | chr3.2:27079259-27079278 | MS.gene50963:intron | 15.0% |
| !! | TTAAATAAAGAATATTTCGT+GGG | - | chr3.2:27079930-27079949 | MS.gene50963:intron | 15.0% |
| !! | TTTAAATAAAGAATATTTCG+TGG | - | chr3.2:27079929-27079948 | MS.gene50963:intron | 15.0% |
| !!! | AAAAAGTTGGTATATTTATA+GGG | - | chr3.2:27079725-27079744 | MS.gene50963:intron | 15.0% |
| !!! | AATTTTTTCGATTTATTTAC+AGG | - | chr3.2:27078513-27078532 | MS.gene50963:intron | 15.0% |
| !!! | AGTATCATTAGTTAATTTTT+AGG | + | chr3.2:27079148-27079167 | None:intergenic | 15.0% |
| !!! | ATATATCCATTTTAAATTAC+TGG | + | chr3.2:27079779-27079798 | None:intergenic | 15.0% |
| !!! | ATGAATTTTTATATTTTTGG+TGG | + | chr3.2:27079509-27079528 | None:intergenic | 15.0% |
| !!! | ATTTTTTCGATTTATTTACA+GGG | - | chr3.2:27078514-27078533 | MS.gene50963:intron | 15.0% |
| !!! | TAGTGATTGAAAATTTTATA+GGG | + | chr3.2:27079364-27079383 | None:intergenic | 15.0% |
| !!! | TTTTATGTACAAAATTAAGT+TGG | + | chr3.2:27078609-27078628 | None:intergenic | 15.0% |
| !!! | TTTTTTACTAAGTTTTTACT+AGG | + | chr3.2:27079258-27079277 | None:intergenic | 15.0% |
| !! | AAATCACCAGTAATTTAAAA+TGG | - | chr3.2:27079770-27079789 | MS.gene50963:intron | 20.0% |
| !! | CACATAAACAAATATATAAG+TGG | + | chr3.2:27079189-27079208 | None:intergenic | 20.0% |
| !! | CACTTATATATTTGTTTATG+TGG | - | chr3.2:27079187-27079206 | MS.gene50963:intron | 20.0% |
| !! | TTATTAAGATTAGGAAGATT+AGG | + | chr3.2:27078312-27078331 | None:intergenic | 20.0% |
| !! | TTCAGAAACATATAATAAGT+GGG | + | chr3.2:27078815-27078834 | None:intergenic | 20.0% |
| !! | TTTCAGAAACATATAATAAG+TGG | + | chr3.2:27078816-27078835 | None:intergenic | 20.0% |
| !!! | ACATGCTTTTTTTTCTTTTA+TGG | - | chr3.2:27078703-27078722 | MS.gene50963:intron | 20.0% |
| !!! | ATATGAGTTTACTTTAAAAG+AGG | - | chr3.2:27079633-27079652 | MS.gene50963:intron | 20.0% |
| !!! | ATCATTAGTTAATTTTTAGG+CGG | + | chr3.2:27079145-27079164 | None:intergenic | 20.0% |
| !!! | CAAAAAGTTGGTATATTTAT+AGG | - | chr3.2:27079724-27079743 | MS.gene50963:intron | 20.0% |
| !!! | GAAAAGTTGGTATATTTATT+GGG | + | chr3.2:27079304-27079323 | None:intergenic | 20.0% |
| !!! | GTAGTGATTGAAAATTTTAT+AGG | + | chr3.2:27079365-27079384 | None:intergenic | 20.0% |
| !!! | TAAATTACTGGTGATTTTTA+GGG | + | chr3.2:27079767-27079786 | None:intergenic | 20.0% |
| !!! | TATGAGTTTACTTTAAAAGA+GGG | - | chr3.2:27079634-27079653 | MS.gene50963:intron | 20.0% |
| !!! | TATGTGGCAATTTTATTTTT+TGG | - | chr3.2:27079203-27079222 | MS.gene50963:intron | 20.0% |
| !!! | TTAAATTACTGGTGATTTTT+AGG | + | chr3.2:27079768-27079787 | None:intergenic | 20.0% |
| !!! | TTTTAGGGTTAATATGTTTT+TGG | + | chr3.2:27079752-27079771 | None:intergenic | 20.0% |
| !!! | TTTTTTCGATTTATTTACAG+GGG | - | chr3.2:27078515-27078534 | MS.gene50963:intron | 20.0% |
| ! | AAATGAATGAATGTTAGAGA+CGG | + | chr3.2:27078955-27078974 | None:intergenic | 25.0% |
| ! | ATTTATTTACAGGGGAATTA+TGG | - | chr3.2:27078523-27078542 | MS.gene50963:intron | 25.0% |
| ! | CATGAGGAAATTTCTTTAAA+TGG | + | chr3.2:27078884-27078903 | None:intergenic | 25.0% |
| ! | TAAAGAAATTTCCTCATGTA+TGG | - | chr3.2:27078886-27078905 | MS.gene50963:intron | 25.0% |
| ! | TCAGAAACATATAATAAGTG+GGG | + | chr3.2:27078814-27078833 | None:intergenic | 25.0% |
| !! | AAATTTCCTATACATTTTGC+AGG | - | chr3.2:27078349-27078368 | MS.gene50963:CDS | 25.0% |
| !! | AAGTTGAAGGAAAATTTTAG+AGG | + | chr3.2:27079712-27079693 | None:intergenic | 25.0% |
| !! | AGTTGAAGGAAAATTTTAGA+GGG | + | chr3.2:27079713-27079694 | None:intergenic | 25.0% |
| !! | TAATTTTTGTACCATACATG+AGG | + | chr3.2:27078900-27078919 | None:intergenic | 25.0% |
| !! | TTTTGCAAAATGCCTATTAA+AGG | + | chr3.2:27078457-27078476 | None:intergenic | 25.0% |
| !!! | ATGACTTGTTTCAATTTCAA+GGG | + | chr3.2:27080213-27080232 | None:intergenic | 25.0% |
| !!! | ATTAAGTTGGTCTACAAAAA+TGG | + | chr3.2:27078596-27078615 | None:intergenic | 25.0% |
| !!! | CGAAAAGTTGGTATATTTAT+TGG | + | chr3.2:27079305-27079324 | None:intergenic | 25.0% |
| !!! | TGAAGATGGTTAGTTTTAAT+GGG | - | chr3.2:27079665-27079684 | MS.gene50963:intron | 25.0% |
| AAATATTAAGCAATGCTCTG+AGG | - | chr3.2:27079068-27079087 | MS.gene50963:intron | 30.0% | |
| AAATGCCTATTAAAGGAACT+AGG | + | chr3.2:27078450-27078469 | None:intergenic | 30.0% | |
| AATATTAAGCAATGCTCTGA+GGG | - | chr3.2:27079069-27079088 | MS.gene50963:intron | 30.0% | |
| AATTCTCAAAACAGAGAGAA+AGG | + | chr3.2:27078415-27078434 | None:intergenic | 30.0% | |
| GAGAGACTAAAACAAAAAGT+TGG | - | chr3.2:27079712-27079731 | MS.gene50963:intron | 30.0% | |
| GAGCATTCAAACAGAAATAT+AGG | + | chr3.2:27079810-27079829 | None:intergenic | 30.0% | |
| TCTTTCCTAGTTCCTTTAAT+AGG | - | chr3.2:27078442-27078461 | MS.gene50963:intron | 30.0% | |
| TGATACACATTCATGTAACA+TGG | + | chr3.2:27078272-27078291 | None:intergenic | 30.0% | |
| TTAATGGGACTAAAAGTTGA+AGG | - | chr3.2:27079680-27079699 | MS.gene50963:intron | 30.0% | |
| TTATAGGGACTAAAAGTTGA+AGG | + | chr3.2:27079349-27079368 | None:intergenic | 30.0% | |
| ! | AAACTAACCATCTTCACTTT+TGG | + | chr3.2:27079661-27079680 | None:intergenic | 30.0% |
| ! | ATGGATATATGATTGACTCA+CGG | + | chr3.2:27078570-27078589 | None:intergenic | 30.0% |
| !! | CATGACTTGTTTCAATTTCA+AGG | + | chr3.2:27080214-27080233 | None:intergenic | 30.0% |
| !! | GTTTTGTGTTGAGTTGTTTT+AGG | + | chr3.2:27078250-27078269 | None:intergenic | 30.0% |
| !!! | GTGAAGATGGTTAGTTTTAA+TGG | - | chr3.2:27079664-27079683 | MS.gene50963:intron | 30.0% |
| !!! | GTGGCAATTTTATTTTTTGG+TGG | - | chr3.2:27079206-27079225 | MS.gene50963:intron | 30.0% |
| !!! | TTTCAATTTCAAGGGCATTT+TGG | + | chr3.2:27080205-27080224 | None:intergenic | 30.0% |
| ACTAGGTACTTTGACGAATA+TGG | + | chr3.2:27079241-27079260 | None:intergenic | 35.0% | |
| ATCTTCTTGTGCATTGAGAT+GGG | + | chr3.2:27080042-27080061 | None:intergenic | 35.0% | |
| CCATAACCTGCAAAATGTAT+AGG | + | chr3.2:27078358-27078377 | None:intergenic | 35.0% | |
| CTAGGTACTTTGACGAATAT+GGG | + | chr3.2:27079240-27079259 | None:intergenic | 35.0% | |
| GTCTTCCAATTGTTGTAACA+GGG | + | chr3.2:27080169-27080188 | None:intergenic | 35.0% | |
| GTTAACACAATGCAGTCTAA+TGG | - | chr3.2:27079983-27080002 | MS.gene50963:intron | 35.0% | |
| TAAAGGAACTAGGAAAGAAG+TGG | + | chr3.2:27078440-27078459 | None:intergenic | 35.0% | |
| TCTGAGAGAAATTGAATGAG+TGG | - | chr3.2:27079857-27079876 | MS.gene50963:intron | 35.0% | |
| TGAATGAGTGGAATCAAACA+TGG | - | chr3.2:27079869-27079888 | MS.gene50963:intron | 35.0% | |
| TGGTCTACAAAAATGGAGTA+TGG | + | chr3.2:27078589-27078608 | None:intergenic | 35.0% | |
| ! | CCTATACATTTTGCAGGTTA+TGG | - | chr3.2:27078355-27078374 | MS.gene50963:CDS | 35.0% |
| ! | TTTTGACAGAAGAACATGCA+TGG | + | chr3.2:27080088-27080107 | None:intergenic | 35.0% |
| !! | GATTTGTTACCATAATAGCC+AGG | + | chr3.2:27080139-27080158 | None:intergenic | 35.0% |
| !!! | TTGTGTTGAGTTGTTTTAGG+AGG | + | chr3.2:27078247-27078266 | None:intergenic | 35.0% |
| CATCTTCTTGTGCATTGAGA+TGG | + | chr3.2:27080043-27080062 | None:intergenic | 40.0% | |
| GCTTGTTTGTGTTCTGTTTC+TGG | - | chr3.2:27078181-27078200 | MS.gene50963:CDS | 40.0% | |
| GGTCTTCCAATTGTTGTAAC+AGG | + | chr3.2:27080170-27080189 | None:intergenic | 40.0% | |
| TCTCAATGCACAAGAAGATG+TGG | - | chr3.2:27080043-27080062 | MS.gene50963:intron | 40.0% | |
| TGTGTCCCTGTTACAACAAT+TGG | - | chr3.2:27080161-27080180 | MS.gene50963:intron | 40.0% | |
| TTGTTACCATAATAGCCAGG+AGG | + | chr3.2:27080136-27080155 | None:intergenic | 40.0% | |
| ! | AGGCGGCTAATTTTCATTGA+TGG | + | chr3.2:27079128-27079147 | None:intergenic | 40.0% |
| AAATGTCTCTGTGTTCCTCC+TGG | - | chr3.2:27080118-27080137 | MS.gene50963:intron | 45.0% | |
| AACAATTGGAAGACCAAGCG+TGG | - | chr3.2:27080175-27080194 | MS.gene50963:intron | 45.0% | |
| ACTAACCTGAGTGGTGATCA+TGG | + | chr3.2:27078222-27078241 | None:intergenic | 45.0% | |
| AGAGGGACCAAAAGTGAAGA+TGG | - | chr3.2:27079651-27079670 | MS.gene50963:intron | 45.0% | |
| AGGAGGAACACAGAGACATT+TGG | + | chr3.2:27080119-27080138 | None:intergenic | 45.0% | |
| GAGGGACGAAAACGAAAAGT+TGG | + | chr3.2:27079317-27079336 | None:intergenic | 45.0% | |
| GCAAAAGATGCTGCTCAGTA+TGG | - | chr3.2:27078377-27078396 | MS.gene50963:intron | 45.0% | |
| TACAGGGGAATTATGGACCT+GGG | - | chr3.2:27078530-27078549 | MS.gene50963:intron | 45.0% | |
| TGGTGATCATGGCAATGCTA+AGG | + | chr3.2:27078211-27078230 | None:intergenic | 45.0% | |
| TGTGTTCCTCCTGGCTATTA+TGG | - | chr3.2:27080127-27080146 | MS.gene50963:intron | 45.0% | |
| TTACAGGGGAATTATGGACC+TGG | - | chr3.2:27078529-27078548 | MS.gene50963:intron | 45.0% | |
| !!! | AAAAAATTCTAATTTTTTTT+GGG | + | chr3.2:27079567-27079548 | None:intergenic | 5.0% |
| !!! | AAAAAATTCTAATTTTTTTT+TGG | - | chr3.2:27079548-27079567 | MS.gene50963:intron | 5.0% |
| !!! | AAAAATTCTAATTTTTTTTT+GGG | - | chr3.2:27079549-27079568 | MS.gene50963:intron | 5.0% |
| !!! | AATATGAATTTTTATATTTT+TGG | + | chr3.2:27079512-27079531 | None:intergenic | 5.0% |
| !!! | TAAAAAATTCTAATTTTTTT+TGG | + | chr3.2:27079566-27079547 | None:intergenic | 5.0% |
| AATTGGAAGACCAAGCGTGG+AGG | - | chr3.2:27080178-27080197 | MS.gene50963:intron | 50.0% | |
| CATTGCCATGATCACCACTC+AGG | - | chr3.2:27078214-27078233 | MS.gene50963:CDS | 50.0% | |
| TAGGAGGAGACTAACCTGAG+TGG | + | chr3.2:27078231-27078250 | None:intergenic | 50.0% | |
| !! | CGGTAGCTTTGAAGACTCCC+AGG | + | chr3.2:27078550-27078569 | None:intergenic | 55.0% |
| !! | GCATTTTGGTCCTCCACGCT+TGG | + | chr3.2:27080191-27080210 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 27078173 | 27080241 | 27078173 | ID=MS.gene50963 |
| chr3.2 | mRNA | 27078173 | 27080241 | 27078173 | ID=MS.gene50963.t1;Parent=MS.gene50963 |
| chr3.2 | exon | 27080179 | 27080241 | 27080179 | ID=MS.gene50963.t1.exon1;Parent=MS.gene50963.t1 |
| chr3.2 | CDS | 27080179 | 27080241 | 27080179 | ID=cds.MS.gene50963.t1;Parent=MS.gene50963.t1 |
| chr3.2 | exon | 27080011 | 27080043 | 27080011 | ID=MS.gene50963.t1.exon2;Parent=MS.gene50963.t1 |
| chr3.2 | CDS | 27080011 | 27080043 | 27080011 | ID=cds.MS.gene50963.t1;Parent=MS.gene50963.t1 |
| chr3.2 | exon | 27078173 | 27078379 | 27078173 | ID=MS.gene50963.t1.exon3;Parent=MS.gene50963.t1 |
| chr3.2 | CDS | 27078173 | 27078379 | 27078173 | ID=cds.MS.gene50963.t1;Parent=MS.gene50963.t1 |
| Gene Sequence |
| Protein sequence |
