AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene52324


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52324.t1 MTR_7g084300 99.744 391 1 0 1 391 1 391 0.0 809
MS.gene52324.t1 MTR_3g083910 83.721 387 63 0 1 387 1 387 0.0 694
MS.gene52324.t1 MTR_3g083920 82.171 387 69 0 1 387 1 387 0.0 681
MS.gene52324.t1 MTR_5g007713 80.720 389 75 0 1 389 1 389 0.0 677
MS.gene52324.t1 MTR_5g007717 80.206 389 77 0 1 389 1 389 0.0 676
MS.gene52324.t1 MTR_5g007730 80.720 389 75 0 1 389 1 389 0.0 675
MS.gene52324.t1 MTR_7g016700 80.720 389 75 0 1 389 1 389 0.0 674
MS.gene52324.t1 MTR_1g098140 80.463 389 76 0 1 389 1 389 0.0 674
MS.gene52324.t1 MTR_7g016720 80.720 389 75 0 1 389 1 389 0.0 673
MS.gene52324.t1 MTR_7g016800 80.463 389 76 0 1 389 1 389 0.0 672
MS.gene52324.t1 MTR_7g016820 80.463 389 76 0 1 389 1 389 0.0 672
MS.gene52324.t1 MTR_1g097935 80.206 389 77 0 1 389 1 389 0.0 671
MS.gene52324.t1 MTR_1g097910 79.949 389 78 0 1 389 1 389 0.0 671
MS.gene52324.t1 MTR_7g016780 80.206 389 77 0 1 389 1 389 0.0 670
MS.gene52324.t1 MTR_5g007760 79.949 389 78 0 1 389 1 389 0.0 668
MS.gene52324.t1 MTR_2g058470 74.807 389 98 0 1 389 1 389 0.0 635
MS.gene52324.t1 MTR_3g086260 75.969 387 93 0 1 387 1 387 0.0 624
MS.gene52324.t1 MTR_3g088675 70.694 389 114 0 1 389 1 389 0.0 609
MS.gene52324.t1 MTR_7g113405 81.848 303 55 0 87 389 1 303 0.0 523
MS.gene52324.t1 MTR_5g007740 71.779 326 92 0 64 389 1 326 8.87e-177 495
MS.gene52324.t1 MTR_5g007723 60.150 399 106 5 12 389 32 398 3.13e-168 476
MS.gene52324.t1 MTR_5g007770 69.333 300 59 2 70 369 1 267 9.73e-148 419
MS.gene52324.t1 MTR_3g088670 51.671 389 174 7 10 387 2 387 8.08e-136 394
MS.gene52324.t1 MTR_4g075560 41.842 380 214 4 11 387 13 388 2.53e-101 306
MS.gene52324.t1 MTR_4g078730 40.214 373 216 2 15 387 24 389 3.09e-95 290
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52324.t1 AT5G13930 85.567 388 55 1 3 389 8 395 0.0 703
MS.gene52324.t1 AT4G34850 40.576 382 222 4 11 389 13 392 5.86e-100 302
MS.gene52324.t1 AT4G00040 40.051 392 223 6 1 387 1 385 7.82e-96 291
MS.gene52324.t1 AT1G02050 40.267 375 216 4 15 387 24 392 1.11e-87 271
MS.gene52324.t1 AT4G34850 40.625 320 187 2 72 389 1 319 1.17e-84 261

Find 96 sgRNAs with CRISPR-Local

Find 129 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAACGACGTGGGTGATTT+TGG 0.156020 7.3:-24330071 None:intergenic
GACGTTTGACAGATGGTTTC+AGG 0.201863 7.3:-24330153 None:intergenic
GTGATTGGAATTCGATCTTT+TGG 0.212747 7.3:+24330584 MS.gene52324:CDS
CCTGCCACTATCTTGGCTTT+TGG 0.245277 7.3:+24329167 MS.gene52324:CDS
GCTTCATAGTGTTCCGGTTC+AGG 0.269901 7.3:+24330855 MS.gene52324:CDS
CGGCACGTGCTTAGTGAATA+TGG 0.281747 7.3:+24330688 MS.gene52324:CDS
CAATGGCCCTGCCACTATCT+TGG 0.318921 7.3:+24329160 MS.gene52324:CDS
CACCAATTGGAATAAGTGAT+TGG 0.330161 7.3:+24330569 MS.gene52324:CDS
CATCTTCTGAAAGATGTTCC+TGG 0.351109 7.3:+24330502 MS.gene52324:CDS
CTCGTTGGACAGGCGCTCTT+CGG 0.353383 7.3:+24330331 MS.gene52324:CDS
AAAGAATATTGAGAAGAGTT+TGG 0.355350 7.3:+24330534 MS.gene52324:CDS
TGACAGATGGTTTCAGGCCT+AGG 0.358090 7.3:-24330147 None:intergenic
GCAGCATCTTTACCTAGCTT+TGG 0.363573 7.3:-24330013 None:intergenic
TTCCAATCACTTATTCCAAT+TGG 0.375548 7.3:-24330571 None:intergenic
TGAAATGAGGAAGAGGTCTA+AGG 0.377743 7.3:+24330747 MS.gene52324:CDS
TGGTTTCAGGCCTAGGAGTT+TGG 0.379137 7.3:-24330140 None:intergenic
TCAATCGCGCCATCAGAATC+AGG 0.381505 7.3:-24330448 None:intergenic
GGACGCTCAACAGTTAAATC+TGG 0.401577 7.3:-24330388 None:intergenic
AACCGGTGAAGGGTTGGAAT+GGG 0.403113 7.3:+24330786 MS.gene52324:CDS
GCCATGTATGCACACATGTT+TGG 0.410756 7.3:-24329947 None:intergenic
GAGTTTGGTGAGTTGATAAT+CGG 0.412058 7.3:-24330125 None:intergenic
CTTCATAGTGTTCCGGTTCA+GGG 0.420668 7.3:+24330856 MS.gene52324:CDS
GTGATACGAAAGTAGTAATC+AGG 0.424244 7.3:-24329230 None:intergenic
GGAGCCGCAGCAATGATTAT+TGG 0.433257 7.3:+24330358 MS.gene52324:CDS
TGAGCACATGACTGATCTTA+AGG 0.436892 7.3:+24329259 MS.gene52324:CDS
ATCTTCTGAAAGATGTTCCT+GGG 0.439500 7.3:+24330503 MS.gene52324:CDS
AATCAAATTCAACCCTGAAC+CGG 0.458714 7.3:-24330868 None:intergenic
TATTGAGAAGAGTTTGGTTG+AGG 0.468319 7.3:+24330540 MS.gene52324:CDS
TTTAGATTCACTCGTTGGAC+AGG 0.469363 7.3:+24330321 MS.gene52324:CDS
CAAGATAGTGGCAGGGCCAT+TGG 0.473281 7.3:-24329159 None:intergenic
GGCAGGGCCATTGGAACGCT+GGG 0.474609 7.3:-24329150 None:intergenic
AGGAAGAGGTCTAAGGAGGA+AGG 0.476362 7.3:+24330754 MS.gene52324:CDS
TGGTTGACCCCATTCGGCTA+TGG 0.477088 7.3:-24330044 None:intergenic
TCCAAACATGTGTGCATACA+TGG 0.477319 7.3:+24329946 MS.gene52324:CDS
GAAAAGTGAGCCCCACTTCA+CGG 0.481609 7.3:-24330480 None:intergenic
CAACCGGTGAAGGGTTGGAA+TGG 0.481930 7.3:+24330785 MS.gene52324:CDS
AGTTGTGCTTCATAGTGTTC+CGG 0.482444 7.3:+24330849 MS.gene52324:CDS
CCAAAAGCCAAGATAGTGGC+AGG 0.486045 7.3:-24329167 None:intergenic
GATTCTGATGGCGCGATTGA+CGG 0.486855 7.3:+24330451 MS.gene52324:CDS
AGACGCAAGACAAGATTTAG+TGG 0.491668 7.3:+24329979 MS.gene52324:CDS
GGAGTTTCTCCTCCTTAAGC+TGG 0.496268 7.3:-24330657 None:intergenic
GGACAGGCGCTCTTCGGTGA+TGG 0.496787 7.3:+24330337 MS.gene52324:CDS
TGGCAGGGCCATTGGAACGC+TGG 0.506301 7.3:-24329151 None:intergenic
GAGGAAGGAAAGATTACAAC+CGG 0.506324 7.3:+24330769 MS.gene52324:CDS
ATATTCTTTGAGATAATCCC+AGG 0.507044 7.3:-24330520 None:intergenic
TATCAACAAGGTTGTTTCGC+GGG 0.508757 7.3:+24330184 MS.gene52324:CDS
TCTAAAATAGCCGGTCCACC+TGG 0.512147 7.3:-24330616 None:intergenic
ACTCATTTAGATTCACTCGT+TGG 0.521614 7.3:+24330316 MS.gene52324:CDS
TATCAACTCACCAAACTCCT+AGG 0.522602 7.3:+24330130 MS.gene52324:CDS
ACTATTCTTCCTGATTCTGA+TGG 0.527847 7.3:+24330439 MS.gene52324:CDS
ATCATAAGACGTTTGACAGA+TGG 0.530194 7.3:-24330160 None:intergenic
GATTACAACCGGTGAAGGGT+TGG 0.533434 7.3:+24330780 MS.gene52324:CDS
GACGGACATCTCCGTGAAGT+GGG 0.533514 7.3:+24330469 MS.gene52324:CDS
GGAAAGATTACAACCGGTGA+AGG 0.534145 7.3:+24330775 MS.gene52324:CDS
ACCCCATTCCAACCCTTCAC+CGG 0.535927 7.3:-24330788 None:intergenic
GGTTGCACATCCAGGTGGAC+CGG 0.539349 7.3:+24330606 MS.gene52324:CDS
CGTAAGGCCCAGCGTTCCAA+TGG 0.541209 7.3:+24329143 MS.gene52324:CDS
TGAATCTAAATGAGTATCTG+AGG 0.542527 7.3:-24330308 None:intergenic
TAAGCACGTGCCGAGTGGAC+CGG 0.545653 7.3:-24330678 None:intergenic
ATCACTGCAGTTACTTTCCG+TGG 0.546031 7.3:+24330283 MS.gene52324:CDS
AAGACAAGATTTAGTGGTAG+TGG 0.551243 7.3:+24329985 MS.gene52324:CDS
AATGAGGAAGAGGTCTAAGG+AGG 0.556587 7.3:+24330750 MS.gene52324:CDS
CGCAGCAATGATTATTGGTG+CGG 0.566927 7.3:+24330363 MS.gene52324:CDS
AGTGCCAAAAGCCAAGATAG+TGG 0.568559 7.3:-24329171 None:intergenic
AGGTTGTTTCGCGGGAGGCA+CGG 0.569106 7.3:+24330192 MS.gene52324:CDS
TCAACCTGGTCTAAAATAGC+CGG 0.571383 7.3:-24330625 None:intergenic
TGACGGACATCTCCGTGAAG+TGG 0.571758 7.3:+24330468 MS.gene52324:CDS
TCTTGTCTTGCGTCTAGTGA+TGG 0.572336 7.3:-24329971 None:intergenic
GTGAGTTGATAATCGGCACC+AGG 0.578548 7.3:-24330118 None:intergenic
CAGCAAGATCTTTCGCTAAG+CGG 0.579250 7.3:-24330219 None:intergenic
GTATCAACAAGGTTGTTTCG+CGG 0.586557 7.3:+24330183 MS.gene52324:CDS
ATCAGTCATGTGCTCACTGT+TGG 0.589052 7.3:-24329252 None:intergenic
AGGAGAAACTCCGGTCCACT+CGG 0.589454 7.3:+24330668 MS.gene52324:CDS
ACTTCCGGTGTAGACATGCC+TGG 0.590702 7.3:+24330100 MS.gene52324:CDS
GACTGTGGAGGAGATTCGTA+AGG 0.592615 7.3:+24329127 MS.gene52324:CDS
AGTTACACAGTGAGAAGGAG+TGG 0.595844 7.3:-24329195 None:intergenic
GCTTGAGTTACACAGTGAGA+AGG 0.600695 7.3:-24329200 None:intergenic
ATGAAGCACAACTGTCTCAA+CGG 0.606270 7.3:-24330839 None:intergenic
CGCACCAATAATCATTGCTG+CGG 0.611377 7.3:-24330362 None:intergenic
CAACAAGGTTGTTTCGCGGG+AGG 0.611947 7.3:+24330187 MS.gene52324:CDS
ACCGGTGAAGGGTTGGAATG+GGG 0.617268 7.3:+24330787 MS.gene52324:CDS
AGCTTAAGGAGGAGAAACTC+CGG 0.618441 7.3:+24330659 MS.gene52324:CDS
GTAGTGGAAGTACCAAAGCT+AGG 0.621351 7.3:+24330001 MS.gene52324:CDS
TTCACTAAGCACGTGCCGAG+TGG 0.624156 7.3:-24330683 None:intergenic
CTCCACAACAATGGTGACTG+TGG 0.635767 7.3:+24329112 None:intergenic
GAAAGATTACAACCGGTGAA+GGG 0.636251 7.3:+24330776 MS.gene52324:CDS
GGCACCAGGCATGTCTACAC+CGG 0.638697 7.3:-24330104 None:intergenic
CGTCTTATGATGTATCAACA+AGG 0.644298 7.3:+24330172 MS.gene52324:CDS
AATGAGTATCTGAGGGACCA+CGG 0.649307 7.3:-24330300 None:intergenic
GAATCTAAATGAGTATCTGA+GGG 0.650511 7.3:-24330307 None:intergenic
CACAACAATGGTGACTGTGG+AGG 0.652306 7.3:+24329115 None:intergenic
ACTGTCTCAACGGTTAAACC+CGG 0.657521 7.3:-24330829 None:intergenic
ACGGACATCTCCGTGAAGTG+GGG 0.663210 7.3:+24330470 MS.gene52324:CDS
CAAAAGCCAAGATAGTGGCA+GGG 0.697505 7.3:-24329166 None:intergenic
AAGTAGTGCAGAAAACGACG+TGG 0.725308 7.3:-24330081 None:intergenic
AGTAGTGCAGAAAACGACGT+GGG 0.726814 7.3:-24330080 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GGATTTTTTTAAAATGTTAT+TGG - chr7.3:24329616-24329635 None:intergenic 15.0%
!! GATCATTATACTAATGATTA+CGG - chr7.3:24329637-24329656 None:intergenic 20.0%
!!! ATCTCTTGTATTTTTCTTTT+TGG + chr7.3:24329834-24329853 MS.gene52324:intron 20.0%
! AAAATGTAACCATTACATCA+AGG - chr7.3:24329787-24329806 None:intergenic 25.0%
! AAAGAATATTGAGAAGAGTT+TGG + chr7.3:24330534-24330553 MS.gene52324:CDS 25.0%
! TCAAAAATTGTGACATGAAA+AGG - chr7.3:24329703-24329722 None:intergenic 25.0%
!! CAACATGTAACATGAAATTT+TGG - chr7.3:24329457-24329476 None:intergenic 25.0%
!! TAATTCACAACAAAAAGTGT+CGG - chr7.3:24329418-24329437 None:intergenic 25.0%
!!! ATAGATTATAGCTGTTTTTG+AGG + chr7.3:24329374-24329393 MS.gene52324:intron 25.0%
!!! TGCTTGTGTTTTGTTTATTT+TGG + chr7.3:24330723-24330742 MS.gene52324:CDS 25.0%
!!! TGTTTATTTTGGATGAAATG+AGG + chr7.3:24330734-24330753 MS.gene52324:CDS 25.0%
CATCAAAAACCTTGATGTAA+TGG + chr7.3:24329775-24329794 MS.gene52324:intron 30.0%
GAATCTAAATGAGTATCTGA+GGG - chr7.3:24330310-24330329 None:intergenic 30.0%
TGAATCTAAATGAGTATCTG+AGG - chr7.3:24330311-24330330 None:intergenic 30.0%
TGATGAGTATGACTAAAAAC+TGG - chr7.3:24329676-24329695 None:intergenic 30.0%
TTCCAATCACTTATTCCAAT+TGG - chr7.3:24330574-24330593 None:intergenic 30.0%
! TGATTGGAATTCGATCTTTT+GGG + chr7.3:24330585-24330604 MS.gene52324:CDS 30.0%
!! ATATTCTTTGAGATAATCCC+AGG - chr7.3:24330523-24330542 None:intergenic 30.0%
!!! CTGAACTTTTTGCTTTTTTC+AGG + chr7.3:24329863-24329882 MS.gene52324:intron 30.0%
AAAAAAAGCCATAGCCGAAT+GGG + chr7.3:24330036-24330055 MS.gene52324:CDS 35.0%
AAGACAAGATTTAGTGGTAG+TGG + chr7.3:24329985-24330004 MS.gene52324:CDS 35.0%
ACTATTCTTCCTGATTCTGA+TGG + chr7.3:24330439-24330458 MS.gene52324:CDS 35.0%
ACTCATTTAGATTCACTCGT+TGG + chr7.3:24330316-24330335 MS.gene52324:CDS 35.0%
ATCATAAGACGTTTGACAGA+TGG - chr7.3:24330163-24330182 None:intergenic 35.0%
CACCAATTGGAATAAGTGAT+TGG + chr7.3:24330569-24330588 MS.gene52324:CDS 35.0%
CGTCTTATGATGTATCAACA+AGG + chr7.3:24330172-24330191 MS.gene52324:CDS 35.0%
GTGATACGAAAGTAGTAATC+AGG - chr7.3:24329233-24329252 None:intergenic 35.0%
TATTGAGAAGAGTTTGGTTG+AGG + chr7.3:24330540-24330559 MS.gene52324:CDS 35.0%
TGAAGAAAAACTCCAGCTTA+AGG + chr7.3:24330645-24330664 MS.gene52324:CDS 35.0%
! ATCTTCTGAAAGATGTTCCT+GGG + chr7.3:24330503-24330522 MS.gene52324:CDS 35.0%
! GTGATTGGAATTCGATCTTT+TGG + chr7.3:24330584-24330603 MS.gene52324:CDS 35.0%
! TTTTGGATGAAATGAGGAAG+AGG + chr7.3:24330740-24330759 MS.gene52324:CDS 35.0%
!! AAAAAGTGTCGGTTTCTCAT+AGG - chr7.3:24329407-24329426 None:intergenic 35.0%
!! GAGTTTGGTGAGTTGATAAT+CGG - chr7.3:24330128-24330147 None:intergenic 35.0%
!!! TCCGATTTTTGAGATTGTCT+CGG + chr7.3:24330408-24330427 MS.gene52324:CDS 35.0%
AAAAAAGCCATAGCCGAATG+GGG + chr7.3:24330037-24330056 MS.gene52324:CDS 40.0%
AGAAAAACTCCAGCTTAAGG+AGG + chr7.3:24330648-24330667 MS.gene52324:CDS 40.0%
AGACGCAAGACAAGATTTAG+TGG + chr7.3:24329979-24329998 MS.gene52324:CDS 40.0%
AGTTGTGCTTCATAGTGTTC+CGG + chr7.3:24330849-24330868 MS.gene52324:CDS 40.0%
ATGAAGCACAACTGTCTCAA+CGG - chr7.3:24330842-24330861 None:intergenic 40.0%
CAAAAAAAGCCATAGCCGAA+TGG + chr7.3:24330035-24330054 MS.gene52324:CDS 40.0%
GAAAGATTACAACCGGTGAA+GGG + chr7.3:24330776-24330795 MS.gene52324:CDS 40.0%
GAGGAAGGAAAGATTACAAC+CGG + chr7.3:24330769-24330788 MS.gene52324:CDS 40.0%
GCCGAGACAATCTCAAAAAT+CGG - chr7.3:24330412-24330431 None:intergenic 40.0%
TATCAACTCACCAAACTCCT+AGG + chr7.3:24330130-24330149 MS.gene52324:CDS 40.0%
TCCAAACATGTGTGCATACA+TGG + chr7.3:24329946-24329965 MS.gene52324:CDS 40.0%
TGAAATGAGGAAGAGGTCTA+AGG + chr7.3:24330747-24330766 MS.gene52324:CDS 40.0%
TGAGCACATGACTGATCTTA+AGG + chr7.3:24329259-24329278 MS.gene52324:CDS 40.0%
TTTAGATTCACTCGTTGGAC+AGG + chr7.3:24330321-24330340 MS.gene52324:CDS 40.0%
! ACGTGGGTGATTTTGGATTT+TGG - chr7.3:24330067-24330086 None:intergenic 40.0%
! CATCTTCTGAAAGATGTTCC+TGG + chr7.3:24330502-24330521 MS.gene52324:CDS 40.0%
! GTATCAACAAGGTTGTTTCG+CGG + chr7.3:24330183-24330202 MS.gene52324:CDS 40.0%
! TATCAACAAGGTTGTTTCGC+GGG + chr7.3:24330184-24330203 MS.gene52324:CDS 40.0%
! TCAACCTGGTCTAAAATAGC+CGG - chr7.3:24330628-24330647 None:intergenic 40.0%
!! TTGGAATGGGGTGTTTTGTT+TGG + chr7.3:24330799-24330818 MS.gene52324:CDS 40.0%
!!! TGGAATGGGGTGTTTTGTTT+GGG + chr7.3:24330800-24330819 MS.gene52324:CDS 40.0%
!!! TGTTTTGTTTGGGTTTGGAC+CGG + chr7.3:24330810-24330829 MS.gene52324:CDS 40.0%
AAGTAGTGCAGAAAACGACG+TGG - chr7.3:24330084-24330103 None:intergenic 45.0%
AATGAGGAAGAGGTCTAAGG+AGG + chr7.3:24330750-24330769 MS.gene52324:CDS 45.0%
AATGAGTATCTGAGGGACCA+CGG - chr7.3:24330303-24330322 None:intergenic 45.0%
ACTGTCTCAACGGTTAAACC+CGG - chr7.3:24330832-24330851 None:intergenic 45.0%
AGCTTAAGGAGGAGAAACTC+CGG + chr7.3:24330659-24330678 MS.gene52324:CDS 45.0%
AGTAGTGCAGAAAACGACGT+GGG - chr7.3:24330083-24330102 None:intergenic 45.0%
AGTGCCAAAAGCCAAGATAG+TGG - chr7.3:24329174-24329193 None:intergenic 45.0%
AGTTACACAGTGAGAAGGAG+TGG - chr7.3:24329198-24329217 None:intergenic 45.0%
ATCAGTCATGTGCTCACTGT+TGG - chr7.3:24329255-24329274 None:intergenic 45.0%
CAGCAAGATCTTTCGCTAAG+CGG - chr7.3:24330222-24330241 None:intergenic 45.0%
CGCACCAATAATCATTGCTG+CGG - chr7.3:24330365-24330384 None:intergenic 45.0%
CGCAGCAATGATTATTGGTG+CGG + chr7.3:24330363-24330382 MS.gene52324:CDS 45.0%
CTTCATAGTGTTCCGGTTCA+GGG + chr7.3:24330856-24330875 MS.gene52324:CDS 45.0%
GACGTTTGACAGATGGTTTC+AGG - chr7.3:24330156-24330175 None:intergenic 45.0%
GCAGCATCTTTACCTAGCTT+TGG - chr7.3:24330016-24330035 None:intergenic 45.0%
GCCATGTATGCACACATGTT+TGG - chr7.3:24329950-24329969 None:intergenic 45.0%
GCTTGAGTTACACAGTGAGA+AGG - chr7.3:24329203-24329222 None:intergenic 45.0%
GGAAAGATTACAACCGGTGA+AGG + chr7.3:24330775-24330794 MS.gene52324:CDS 45.0%
GGACGCTCAACAGTTAAATC+TGG - chr7.3:24330391-24330410 None:intergenic 45.0%
TCTTGTCTTGCGTCTAGTGA+TGG - chr7.3:24329974-24329993 None:intergenic 45.0%
! ATCACTGCAGTTACTTTCCG+TGG + chr7.3:24330283-24330302 MS.gene52324:CDS 45.0%
! CAAAAGCCAAGATAGTGGCA+GGG - chr7.3:24329169-24329188 None:intergenic 45.0%
! GAAAACGACGTGGGTGATTT+TGG - chr7.3:24330074-24330093 None:intergenic 45.0%
! GCTGGAGTTTTTCTTCAACC+TGG - chr7.3:24330642-24330661 None:intergenic 45.0%
! GTTGAGGCTTTTGCACCAAT+TGG + chr7.3:24330556-24330575 MS.gene52324:CDS 45.0%
!! GTAGTGGAAGTACCAAAGCT+AGG + chr7.3:24330001-24330020 MS.gene52324:CDS 45.0%
!! GTCGTTTTCTGCACTACTTC+CGG + chr7.3:24330085-24330104 MS.gene52324:CDS 45.0%
!!! ATCTTTTGGGTTGCACATCC+AGG + chr7.3:24330598-24330617 MS.gene52324:CDS 45.0%
!!! GGATTTTGGTTGACCCCATT+CGG - chr7.3:24330053-24330072 None:intergenic 45.0%
!!! GTTTTGTTTGGGTTTGGACC+GGG + chr7.3:24330811-24330830 MS.gene52324:CDS 45.0%
!!! TGGGGTGTTTTGTTTGGGTT+TGG + chr7.3:24330805-24330824 MS.gene52324:CDS 45.0%
AACCGGTGAAGGGTTGGAAT+GGG + chr7.3:24330786-24330805 MS.gene52324:CDS 50.0%
AGGAAGAGGTCTAAGGAGGA+AGG + chr7.3:24330754-24330773 MS.gene52324:CDS 50.0%
CGGCACGTGCTTAGTGAATA+TGG + chr7.3:24330688-24330707 MS.gene52324:CDS 50.0%
GAAAAGTGAGCCCCACTTCA+CGG - chr7.3:24330483-24330502 None:intergenic 50.0%
GACTGTGGAGGAGATTCGTA+AGG + chr7.3:24329127-24329146 MS.gene52324:CDS 50.0%
GATTACAACCGGTGAAGGGT+TGG + chr7.3:24330780-24330799 MS.gene52324:CDS 50.0%
GCTTCATAGTGTTCCGGTTC+AGG + chr7.3:24330855-24330874 MS.gene52324:CDS 50.0%
GGAGCCGCAGCAATGATTAT+TGG + chr7.3:24330358-24330377 MS.gene52324:CDS 50.0%
GGAGTTTCTCCTCCTTAAGC+TGG - chr7.3:24330660-24330679 None:intergenic 50.0%
TCAATCGCGCCATCAGAATC+AGG - chr7.3:24330451-24330470 None:intergenic 50.0%
TGACAGATGGTTTCAGGCCT+AGG - chr7.3:24330150-24330169 None:intergenic 50.0%
TGGTTTCAGGCCTAGGAGTT+TGG - chr7.3:24330143-24330162 None:intergenic 50.0%
! CCAAAAGCCAAGATAGTGGC+AGG - chr7.3:24329170-24329189 None:intergenic 50.0%
! GATTCTGATGGCGCGATTGA+CGG + chr7.3:24330451-24330470 MS.gene52324:CDS 50.0%
! TCTAAAATAGCCGGTCCACC+TGG - chr7.3:24330619-24330638 None:intergenic 50.0%
!! CCTGCCACTATCTTGGCTTT+TGG + chr7.3:24329167-24329186 MS.gene52324:CDS 50.0%
!! GTGAGTTGATAATCGGCACC+AGG - chr7.3:24330121-24330140 None:intergenic 50.0%
!! TGGACCGGCTATTTTAGACC+AGG + chr7.3:24330621-24330640 MS.gene52324:CDS 50.0%
!!! TTTTGGGTTGCACATCCAGG+TGG + chr7.3:24330601-24330620 MS.gene52324:CDS 50.0%
ACCCCATTCCAACCCTTCAC+CGG - chr7.3:24330791-24330810 None:intergenic 55.0%
ACCGGTGAAGGGTTGGAATG+GGG + chr7.3:24330787-24330806 MS.gene52324:CDS 55.0%
ACGGACATCTCCGTGAAGTG+GGG + chr7.3:24330470-24330489 MS.gene52324:CDS 55.0%
ACTTCCGGTGTAGACATGCC+TGG + chr7.3:24330100-24330119 MS.gene52324:CDS 55.0%
AGGAGAAACTCCGGTCCACT+CGG + chr7.3:24330668-24330687 MS.gene52324:CDS 55.0%
CAACCGGTGAAGGGTTGGAA+TGG + chr7.3:24330785-24330804 MS.gene52324:CDS 55.0%
CAATGGCCCTGCCACTATCT+TGG + chr7.3:24329160-24329179 MS.gene52324:CDS 55.0%
GACGGACATCTCCGTGAAGT+GGG + chr7.3:24330469-24330488 MS.gene52324:CDS 55.0%
TGGTTGACCCCATTCGGCTA+TGG - chr7.3:24330047-24330066 None:intergenic 55.0%
TTCACTAAGCACGTGCCGAG+TGG - chr7.3:24330686-24330705 None:intergenic 55.0%
! CAACAAGGTTGTTTCGCGGG+AGG + chr7.3:24330187-24330206 MS.gene52324:CDS 55.0%
! CAAGATAGTGGCAGGGCCAT+TGG - chr7.3:24329162-24329181 None:intergenic 55.0%
! TGACGGACATCTCCGTGAAG+TGG + chr7.3:24330468-24330487 MS.gene52324:CDS 55.0%
CGTAAGGCCCAGCGTTCCAA+TGG + chr7.3:24329143-24329162 MS.gene52324:CDS 60.0%
CTCGTTGGACAGGCGCTCTT+CGG + chr7.3:24330331-24330350 MS.gene52324:CDS 60.0%
GGCACCAGGCATGTCTACAC+CGG - chr7.3:24330107-24330126 None:intergenic 60.0%
GGTTGCACATCCAGGTGGAC+CGG + chr7.3:24330606-24330625 MS.gene52324:CDS 60.0%
TAAGCACGTGCCGAGTGGAC+CGG - chr7.3:24330681-24330700 None:intergenic 60.0%
! AGGTTGTTTCGCGGGAGGCA+CGG + chr7.3:24330192-24330211 MS.gene52324:CDS 60.0%
GGACAGGCGCTCTTCGGTGA+TGG + chr7.3:24330337-24330356 MS.gene52324:CDS 65.0%
GGCAGGGCCATTGGAACGCT+GGG - chr7.3:24329153-24329172 None:intergenic 65.0%
TGGCAGGGCCATTGGAACGC+TGG - chr7.3:24329154-24329173 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 24329122 24330882 24329122 ID=MS.gene52324
chr7.3 mRNA 24329122 24330882 24329122 ID=MS.gene52324.t1;Parent=MS.gene52324
chr7.3 exon 24329122 24329299 24329122 ID=MS.gene52324.t1.exon1;Parent=MS.gene52324.t1
chr7.3 CDS 24329122 24329299 24329122 ID=cds.MS.gene52324.t1;Parent=MS.gene52324.t1
chr7.3 exon 24329885 24330882 24329885 ID=MS.gene52324.t1.exon2;Parent=MS.gene52324.t1
chr7.3 CDS 24329885 24330882 24329885 ID=cds.MS.gene52324.t1;Parent=MS.gene52324.t1
Gene Sequence

>MS.gene52324

ATGGTGACTGTGGAGGAGATTCGTAAGGCCCAGCGTTCCAATGGCCCTGCCACTATCTTGGCTTTTGGCACTGCCACTCCTTCTCACTGTGTAACTCAAGCTGAATATCCTGATTACTACTTTCGTATCACCAACAGTGAGCACATGACTGATCTTAAGGAAAAATTCAAGCGCATGTGTATGTCTCTAAATCTTAACTTGCATGTATTATTTCATATAAACTTTTCTTATGATTTTAATGTTACATTTTTCATAGATTATAGCTGTTTTTGAGGAATTTTACCTATGAGAAACCGACACTTTTTGTTGTGAATTATCTAAAATTATCATAGCCAAAATTTCATGTTACATGTTGTGTCGCAATCTTTGATATTAGACACGTTGTGTCGCAGTCGTTGATATTGTAGATAATTTGTAGTTAACTTTTTGTGTGATTGCAATTTCATCATAGACTCAAAAATATTAGAAAAGTTTGTGTCACAAATTAGATTCCAATAACATTTTAAAAAAATCCGTAATCATTAGTATAATGATCATAATCATGTTACACTCCAGTTTTTAGTCATACTCATCATTGTCCTTTTCATGTCACAATTTTTGATATTGCATAAAATGAGTACATTTGAATGTAACTAATCTGATTGCTGTAAAAACATCAAAAACCTTGATGTAATGGTTACATTTTAAAATCTTGATTATAGAAAAAATTAAAATCTCTTGTATTTTTCTTTTTGGACTTTTCTGAACTTTTTGCTTTTTTCAGGTGAGAAATCGATGATAAAGAAACGTTACATGCACATAACAGAAGAATTTCTGAAAGAGAATCCAAACATGTGTGCATACATGGCACCATCACTAGACGCAAGACAAGATTTAGTGGTAGTGGAAGTACCAAAGCTAGGTAAAGATGCTGCAAAAAAAGCCATAGCCGAATGGGGTCAACCAAAATCCAAAATCACCCACGTCGTTTTCTGCACTACTTCCGGTGTAGACATGCCTGGTGCCGATTATCAACTCACCAAACTCCTAGGCCTGAAACCATCTGTCAAACGTCTTATGATGTATCAACAAGGTTGTTTCGCGGGAGGCACGGTTCTCCGCTTAGCGAAAGATCTTGCTGAGAATAACAAAAATGCAAGAGTTCTAGTTGTTTGTTCTGAAATCACTGCAGTTACTTTCCGTGGTCCCTCAGATACTCATTTAGATTCACTCGTTGGACAGGCGCTCTTCGGTGATGGAGCCGCAGCAATGATTATTGGTGCGGATCCAGATTTAACTGTTGAGCGTCCGATTTTTGAGATTGTCTCGGCTGCTCAGACTATTCTTCCTGATTCTGATGGCGCGATTGACGGACATCTCCGTGAAGTGGGGCTCACTTTTCATCTTCTGAAAGATGTTCCTGGGATTATCTCAAAGAATATTGAGAAGAGTTTGGTTGAGGCTTTTGCACCAATTGGAATAAGTGATTGGAATTCGATCTTTTGGGTTGCACATCCAGGTGGACCGGCTATTTTAGACCAGGTTGAAGAAAAACTCCAGCTTAAGGAGGAGAAACTCCGGTCCACTCGGCACGTGCTTAGTGAATATGGAAATATGTCGAGTGCTTGTGTTTTGTTTATTTTGGATGAAATGAGGAAGAGGTCTAAGGAGGAAGGAAAGATTACAACCGGTGAAGGGTTGGAATGGGGTGTTTTGTTTGGGTTTGGACCGGGTTTAACCGTTGAGACAGTTGTGCTTCATAGTGTTCCGGTTCAGGGTTGA

Protein sequence

>MS.gene52324.t1

MVTVEEIRKAQRSNGPATILAFGTATPSHCVTQAEYPDYYFRITNSEHMTDLKEKFKRMCEKSMIKKRYMHITEEFLKENPNMCAYMAPSLDARQDLVVVEVPKLGKDAAKKAIAEWGQPKSKITHVVFCTTSGVDMPGADYQLTKLLGLKPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKNARVLVVCSEITAVTFRGPSDTHLDSLVGQALFGDGAAAMIIGADPDLTVERPIFEIVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGIISKNIEKSLVEAFAPIGISDWNSIFWVAHPGGPAILDQVEEKLQLKEEKLRSTRHVLSEYGNMSSACVLFILDEMRKRSKEEGKITTGEGLEWGVLFGFGPGLTVETVVLHSVPVQG