Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52324.t1 | XP_003624524.1 | 99.7 | 391 | 1 | 0 | 1 | 391 | 1 | 391 | 2.40E-224 | 787.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52324.t1 | P51075 | 88.2 | 389 | 46 | 0 | 1 | 389 | 1 | 389 | 2.8e-205 | 715.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52324.t1 | G7KXB8 | 99.7 | 391 | 1 | 0 | 1 | 391 | 1 | 391 | 1.8e-224 | 787.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049170 | MS.gene52324 | 0.814058 | 1.87E-51 | -1.69E-46 |
MS.gene049356 | MS.gene52324 | 0.82981 | 4.18E-55 | -1.69E-46 |
MS.gene049369 | MS.gene52324 | 0.815846 | 7.50E-52 | -1.69E-46 |
MS.gene049396 | MS.gene52324 | 0.813211 | 2.87E-51 | -1.69E-46 |
MS.gene050301 | MS.gene52324 | 0.820683 | 6.03E-53 | -1.69E-46 |
MS.gene050520 | MS.gene52324 | 0.819283 | 1.26E-52 | -1.69E-46 |
MS.gene050593 | MS.gene52324 | 0.830434 | 2.94E-55 | -1.69E-46 |
MS.gene050625 | MS.gene52324 | 0.804412 | 2.19E-49 | -1.69E-46 |
MS.gene050670 | MS.gene52324 | 0.872117 | 4.07E-67 | -1.69E-46 |
MS.gene05105 | MS.gene52324 | 0.870482 | 1.41E-66 | -1.69E-46 |
MS.gene051255 | MS.gene52324 | 0.83843 | 2.89E-57 | -1.69E-46 |
MS.gene051360 | MS.gene52324 | 0.838849 | 2.25E-57 | -1.69E-46 |
MS.gene051387 | MS.gene52324 | 0.827347 | 1.65E-54 | -1.69E-46 |
MS.gene051525 | MS.gene52324 | 0.850175 | 2.01E-60 | -1.69E-46 |
MS.gene051582 | MS.gene52324 | 0.810971 | 8.84E-51 | -1.69E-46 |
MS.gene051605 | MS.gene52324 | 0.821485 | 3.94E-53 | -1.69E-46 |
MS.gene052011 | MS.gene52324 | -0.803952 | 2.73E-49 | -1.69E-46 |
MS.gene052188 | MS.gene52324 | 0.856052 | 4.17E-62 | -1.69E-46 |
MS.gene052253 | MS.gene52324 | 0.838059 | 3.60E-57 | -1.69E-46 |
MS.gene052310 | MS.gene52324 | 0.82369 | 1.21E-53 | -1.69E-46 |
MS.gene052322 | MS.gene52324 | 0.800302 | 1.54E-48 | -1.69E-46 |
MS.gene052340 | MS.gene52324 | 0.83649 | 9.08E-57 | -1.69E-46 |
MS.gene052346 | MS.gene52324 | 0.813835 | 2.09E-51 | -1.69E-46 |
MS.gene052414 | MS.gene52324 | 0.826308 | 2.91E-54 | -1.69E-46 |
MS.gene052421 | MS.gene52324 | 0.832257 | 1.05E-55 | -1.69E-46 |
MS.gene052481 | MS.gene52324 | 0.805507 | 1.29E-49 | -1.69E-46 |
MS.gene052485 | MS.gene52324 | 0.834775 | 2.47E-56 | -1.69E-46 |
MS.gene052999 | MS.gene52324 | 0.852013 | 6.10E-61 | -1.69E-46 |
MS.gene053169 | MS.gene52324 | 0.864583 | 1.10E-64 | -1.69E-46 |
MS.gene053209 | MS.gene52324 | 0.82557 | 4.36E-54 | -1.69E-46 |
MS.gene05335 | MS.gene52324 | 0.850806 | 1.34E-60 | -1.69E-46 |
MS.gene053449 | MS.gene52324 | 0.80842 | 3.12E-50 | -1.69E-46 |
MS.gene053574 | MS.gene52324 | 0.807303 | 5.40E-50 | -1.69E-46 |
MS.gene053758 | MS.gene52324 | 0.853752 | 1.94E-61 | -1.69E-46 |
MS.gene053813 | MS.gene52324 | 0.839455 | 1.57E-57 | -1.69E-46 |
MS.gene053912 | MS.gene52324 | 0.835509 | 1.61E-56 | -1.69E-46 |
MS.gene054010 | MS.gene52324 | 0.82094 | 5.26E-53 | -1.69E-46 |
MS.gene054011 | MS.gene52324 | 0.810789 | 9.68E-51 | -1.69E-46 |
MS.gene054012 | MS.gene52324 | 0.804234 | 2.38E-49 | -1.69E-46 |
MS.gene054013 | MS.gene52324 | 0.804094 | 2.55E-49 | -1.69E-46 |
MS.gene054556 | MS.gene52324 | 0.866584 | 2.56E-65 | -1.69E-46 |
MS.gene054917 | MS.gene52324 | 0.822257 | 2.61E-53 | -1.69E-46 |
MS.gene054927 | MS.gene52324 | 0.800254 | 1.57E-48 | -1.69E-46 |
MS.gene05505 | MS.gene52324 | 0.809702 | 1.66E-50 | -1.69E-46 |
MS.gene055116 | MS.gene52324 | 0.866094 | 3.66E-65 | -1.69E-46 |
MS.gene055369 | MS.gene52324 | 0.806357 | 8.56E-50 | -1.69E-46 |
MS.gene055604 | MS.gene52324 | 0.80809 | 3.67E-50 | -1.69E-46 |
MS.gene055666 | MS.gene52324 | 0.811891 | 5.58E-51 | -1.69E-46 |
MS.gene055722 | MS.gene52324 | 0.808918 | 2.45E-50 | -1.69E-46 |
MS.gene055741 | MS.gene52324 | 0.819222 | 1.30E-52 | -1.69E-46 |
MS.gene055744 | MS.gene52324 | 0.823438 | 1.39E-53 | -1.69E-46 |
MS.gene055909 | MS.gene52324 | 0.83813 | 3.45E-57 | -1.69E-46 |
MS.gene055911 | MS.gene52324 | 0.839541 | 1.49E-57 | -1.69E-46 |
MS.gene056166 | MS.gene52324 | 0.810326 | 1.22E-50 | -1.69E-46 |
MS.gene056191 | MS.gene52324 | 0.840853 | 6.77E-58 | -1.69E-46 |
MS.gene056407 | MS.gene52324 | 0.818366 | 2.03E-52 | -1.69E-46 |
MS.gene056410 | MS.gene52324 | 0.812994 | 3.20E-51 | -1.69E-46 |
MS.gene056422 | MS.gene52324 | 0.827868 | 1.23E-54 | -1.69E-46 |
MS.gene056511 | MS.gene52324 | 0.856155 | 3.90E-62 | -1.69E-46 |
MS.gene056659 | MS.gene52324 | 0.803926 | 2.76E-49 | -1.69E-46 |
MS.gene057019 | MS.gene52324 | 0.808175 | 3.52E-50 | -1.69E-46 |
MS.gene057076 | MS.gene52324 | 0.807521 | 4.85E-50 | -1.69E-46 |
MS.gene057124 | MS.gene52324 | 0.831996 | 1.22E-55 | -1.69E-46 |
MS.gene057331 | MS.gene52324 | 0.802984 | 4.33E-49 | -1.69E-46 |
MS.gene057448 | MS.gene52324 | 0.820648 | 6.14E-53 | -1.69E-46 |
MS.gene057449 | MS.gene52324 | 0.813619 | 2.34E-51 | -1.69E-46 |
MS.gene057450 | MS.gene52324 | 0.822006 | 2.98E-53 | -1.69E-46 |
MS.gene057734 | MS.gene52324 | 0.82017 | 7.90E-53 | -1.69E-46 |
MS.gene057749 | MS.gene52324 | 0.83816 | 3.39E-57 | -1.69E-46 |
MS.gene057823 | MS.gene52324 | 0.835864 | 1.31E-56 | -1.69E-46 |
MS.gene057825 | MS.gene52324 | 0.810077 | 1.38E-50 | -1.69E-46 |
MS.gene058007 | MS.gene52324 | 0.842977 | 1.86E-58 | -1.69E-46 |
MS.gene05811 | MS.gene52324 | 0.803193 | 3.92E-49 | -1.69E-46 |
MS.gene058120 | MS.gene52324 | 0.827992 | 1.15E-54 | -1.69E-46 |
MS.gene058130 | MS.gene52324 | 0.820056 | 8.39E-53 | -1.69E-46 |
MS.gene058444 | MS.gene52324 | 0.803684 | 3.10E-49 | -1.69E-46 |
MS.gene058660 | MS.gene52324 | 0.812757 | 3.61E-51 | -1.69E-46 |
MS.gene058700 | MS.gene52324 | 0.859485 | 4.00E-63 | -1.69E-46 |
MS.gene05886 | MS.gene52324 | 0.837991 | 3.75E-57 | -1.69E-46 |
MS.gene058928 | MS.gene52324 | 0.822033 | 2.94E-53 | -1.69E-46 |
MS.gene058948 | MS.gene52324 | 0.808676 | 2.75E-50 | -1.69E-46 |
MS.gene058995 | MS.gene52324 | 0.814241 | 1.70E-51 | -1.69E-46 |
MS.gene05907 | MS.gene52324 | 0.818228 | 2.19E-52 | -1.69E-46 |
MS.gene059082 | MS.gene52324 | 0.80128 | 9.70E-49 | -1.69E-46 |
MS.gene059141 | MS.gene52324 | 0.818605 | 1.80E-52 | -1.69E-46 |
MS.gene059294 | MS.gene52324 | 0.825755 | 3.94E-54 | -1.69E-46 |
MS.gene059366 | MS.gene52324 | 0.818256 | 2.15E-52 | -1.69E-46 |
MS.gene059420 | MS.gene52324 | 0.849923 | 2.37E-60 | -1.69E-46 |
MS.gene059536 | MS.gene52324 | 0.813197 | 2.89E-51 | -1.69E-46 |
MS.gene059676 | MS.gene52324 | 0.825362 | 4.89E-54 | -1.69E-46 |
MS.gene059688 | MS.gene52324 | 0.870857 | 1.06E-66 | -1.69E-46 |
MS.gene059692 | MS.gene52324 | 0.845681 | 3.49E-59 | -1.69E-46 |
MS.gene059695 | MS.gene52324 | 0.850728 | 1.41E-60 | -1.69E-46 |
MS.gene059711 | MS.gene52324 | 0.867682 | 1.14E-65 | -1.69E-46 |
MS.gene059807 | MS.gene52324 | 0.842383 | 2.67E-58 | -1.69E-46 |
MS.gene05984 | MS.gene52324 | 0.814442 | 1.54E-51 | -1.69E-46 |
MS.gene059974 | MS.gene52324 | 0.831393 | 1.71E-55 | -1.69E-46 |
MS.gene060372 | MS.gene52324 | 0.833378 | 5.52E-56 | -1.69E-46 |
MS.gene060401 | MS.gene52324 | 0.801229 | 9.94E-49 | -1.69E-46 |
MS.gene060403 | MS.gene52324 | 0.818103 | 2.33E-52 | -1.69E-46 |
MS.gene060835 | MS.gene52324 | 0.800728 | 1.26E-48 | -1.69E-46 |
MS.gene060837 | MS.gene52324 | 0.883022 | 6.38E-71 | -1.69E-46 |
MS.gene061154 | MS.gene52324 | 0.866451 | 2.82E-65 | -1.69E-46 |
MS.gene061159 | MS.gene52324 | 0.809461 | 1.87E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52324.t1 | MTR_7g084300 | 99.744 | 391 | 1 | 0 | 1 | 391 | 1 | 391 | 0.0 | 809 |
MS.gene52324.t1 | MTR_3g083910 | 83.721 | 387 | 63 | 0 | 1 | 387 | 1 | 387 | 0.0 | 694 |
MS.gene52324.t1 | MTR_3g083920 | 82.171 | 387 | 69 | 0 | 1 | 387 | 1 | 387 | 0.0 | 681 |
MS.gene52324.t1 | MTR_5g007713 | 80.720 | 389 | 75 | 0 | 1 | 389 | 1 | 389 | 0.0 | 677 |
MS.gene52324.t1 | MTR_5g007717 | 80.206 | 389 | 77 | 0 | 1 | 389 | 1 | 389 | 0.0 | 676 |
MS.gene52324.t1 | MTR_5g007730 | 80.720 | 389 | 75 | 0 | 1 | 389 | 1 | 389 | 0.0 | 675 |
MS.gene52324.t1 | MTR_7g016700 | 80.720 | 389 | 75 | 0 | 1 | 389 | 1 | 389 | 0.0 | 674 |
MS.gene52324.t1 | MTR_1g098140 | 80.463 | 389 | 76 | 0 | 1 | 389 | 1 | 389 | 0.0 | 674 |
MS.gene52324.t1 | MTR_7g016720 | 80.720 | 389 | 75 | 0 | 1 | 389 | 1 | 389 | 0.0 | 673 |
MS.gene52324.t1 | MTR_7g016800 | 80.463 | 389 | 76 | 0 | 1 | 389 | 1 | 389 | 0.0 | 672 |
MS.gene52324.t1 | MTR_7g016820 | 80.463 | 389 | 76 | 0 | 1 | 389 | 1 | 389 | 0.0 | 672 |
MS.gene52324.t1 | MTR_1g097935 | 80.206 | 389 | 77 | 0 | 1 | 389 | 1 | 389 | 0.0 | 671 |
MS.gene52324.t1 | MTR_1g097910 | 79.949 | 389 | 78 | 0 | 1 | 389 | 1 | 389 | 0.0 | 671 |
MS.gene52324.t1 | MTR_7g016780 | 80.206 | 389 | 77 | 0 | 1 | 389 | 1 | 389 | 0.0 | 670 |
MS.gene52324.t1 | MTR_5g007760 | 79.949 | 389 | 78 | 0 | 1 | 389 | 1 | 389 | 0.0 | 668 |
MS.gene52324.t1 | MTR_2g058470 | 74.807 | 389 | 98 | 0 | 1 | 389 | 1 | 389 | 0.0 | 635 |
MS.gene52324.t1 | MTR_3g086260 | 75.969 | 387 | 93 | 0 | 1 | 387 | 1 | 387 | 0.0 | 624 |
MS.gene52324.t1 | MTR_3g088675 | 70.694 | 389 | 114 | 0 | 1 | 389 | 1 | 389 | 0.0 | 609 |
MS.gene52324.t1 | MTR_7g113405 | 81.848 | 303 | 55 | 0 | 87 | 389 | 1 | 303 | 0.0 | 523 |
MS.gene52324.t1 | MTR_5g007740 | 71.779 | 326 | 92 | 0 | 64 | 389 | 1 | 326 | 8.87e-177 | 495 |
MS.gene52324.t1 | MTR_5g007723 | 60.150 | 399 | 106 | 5 | 12 | 389 | 32 | 398 | 3.13e-168 | 476 |
MS.gene52324.t1 | MTR_5g007770 | 69.333 | 300 | 59 | 2 | 70 | 369 | 1 | 267 | 9.73e-148 | 419 |
MS.gene52324.t1 | MTR_3g088670 | 51.671 | 389 | 174 | 7 | 10 | 387 | 2 | 387 | 8.08e-136 | 394 |
MS.gene52324.t1 | MTR_4g075560 | 41.842 | 380 | 214 | 4 | 11 | 387 | 13 | 388 | 2.53e-101 | 306 |
MS.gene52324.t1 | MTR_4g078730 | 40.214 | 373 | 216 | 2 | 15 | 387 | 24 | 389 | 3.09e-95 | 290 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52324.t1 | AT5G13930 | 85.567 | 388 | 55 | 1 | 3 | 389 | 8 | 395 | 0.0 | 703 |
MS.gene52324.t1 | AT4G34850 | 40.576 | 382 | 222 | 4 | 11 | 389 | 13 | 392 | 5.86e-100 | 302 |
MS.gene52324.t1 | AT4G00040 | 40.051 | 392 | 223 | 6 | 1 | 387 | 1 | 385 | 7.82e-96 | 291 |
MS.gene52324.t1 | AT1G02050 | 40.267 | 375 | 216 | 4 | 15 | 387 | 24 | 392 | 1.11e-87 | 271 |
MS.gene52324.t1 | AT4G34850 | 40.625 | 320 | 187 | 2 | 72 | 389 | 1 | 319 | 1.17e-84 | 261 |
Find 96 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAAAACGACGTGGGTGATTT+TGG | 0.156020 | 7.3:-24330071 | None:intergenic |
GACGTTTGACAGATGGTTTC+AGG | 0.201863 | 7.3:-24330153 | None:intergenic |
GTGATTGGAATTCGATCTTT+TGG | 0.212747 | 7.3:+24330584 | MS.gene52324:CDS |
CCTGCCACTATCTTGGCTTT+TGG | 0.245277 | 7.3:+24329167 | MS.gene52324:CDS |
GCTTCATAGTGTTCCGGTTC+AGG | 0.269901 | 7.3:+24330855 | MS.gene52324:CDS |
CGGCACGTGCTTAGTGAATA+TGG | 0.281747 | 7.3:+24330688 | MS.gene52324:CDS |
CAATGGCCCTGCCACTATCT+TGG | 0.318921 | 7.3:+24329160 | MS.gene52324:CDS |
CACCAATTGGAATAAGTGAT+TGG | 0.330161 | 7.3:+24330569 | MS.gene52324:CDS |
CATCTTCTGAAAGATGTTCC+TGG | 0.351109 | 7.3:+24330502 | MS.gene52324:CDS |
CTCGTTGGACAGGCGCTCTT+CGG | 0.353383 | 7.3:+24330331 | MS.gene52324:CDS |
AAAGAATATTGAGAAGAGTT+TGG | 0.355350 | 7.3:+24330534 | MS.gene52324:CDS |
TGACAGATGGTTTCAGGCCT+AGG | 0.358090 | 7.3:-24330147 | None:intergenic |
GCAGCATCTTTACCTAGCTT+TGG | 0.363573 | 7.3:-24330013 | None:intergenic |
TTCCAATCACTTATTCCAAT+TGG | 0.375548 | 7.3:-24330571 | None:intergenic |
TGAAATGAGGAAGAGGTCTA+AGG | 0.377743 | 7.3:+24330747 | MS.gene52324:CDS |
TGGTTTCAGGCCTAGGAGTT+TGG | 0.379137 | 7.3:-24330140 | None:intergenic |
TCAATCGCGCCATCAGAATC+AGG | 0.381505 | 7.3:-24330448 | None:intergenic |
GGACGCTCAACAGTTAAATC+TGG | 0.401577 | 7.3:-24330388 | None:intergenic |
AACCGGTGAAGGGTTGGAAT+GGG | 0.403113 | 7.3:+24330786 | MS.gene52324:CDS |
GCCATGTATGCACACATGTT+TGG | 0.410756 | 7.3:-24329947 | None:intergenic |
GAGTTTGGTGAGTTGATAAT+CGG | 0.412058 | 7.3:-24330125 | None:intergenic |
CTTCATAGTGTTCCGGTTCA+GGG | 0.420668 | 7.3:+24330856 | MS.gene52324:CDS |
GTGATACGAAAGTAGTAATC+AGG | 0.424244 | 7.3:-24329230 | None:intergenic |
GGAGCCGCAGCAATGATTAT+TGG | 0.433257 | 7.3:+24330358 | MS.gene52324:CDS |
TGAGCACATGACTGATCTTA+AGG | 0.436892 | 7.3:+24329259 | MS.gene52324:CDS |
ATCTTCTGAAAGATGTTCCT+GGG | 0.439500 | 7.3:+24330503 | MS.gene52324:CDS |
AATCAAATTCAACCCTGAAC+CGG | 0.458714 | 7.3:-24330868 | None:intergenic |
TATTGAGAAGAGTTTGGTTG+AGG | 0.468319 | 7.3:+24330540 | MS.gene52324:CDS |
TTTAGATTCACTCGTTGGAC+AGG | 0.469363 | 7.3:+24330321 | MS.gene52324:CDS |
CAAGATAGTGGCAGGGCCAT+TGG | 0.473281 | 7.3:-24329159 | None:intergenic |
GGCAGGGCCATTGGAACGCT+GGG | 0.474609 | 7.3:-24329150 | None:intergenic |
AGGAAGAGGTCTAAGGAGGA+AGG | 0.476362 | 7.3:+24330754 | MS.gene52324:CDS |
TGGTTGACCCCATTCGGCTA+TGG | 0.477088 | 7.3:-24330044 | None:intergenic |
TCCAAACATGTGTGCATACA+TGG | 0.477319 | 7.3:+24329946 | MS.gene52324:CDS |
GAAAAGTGAGCCCCACTTCA+CGG | 0.481609 | 7.3:-24330480 | None:intergenic |
CAACCGGTGAAGGGTTGGAA+TGG | 0.481930 | 7.3:+24330785 | MS.gene52324:CDS |
AGTTGTGCTTCATAGTGTTC+CGG | 0.482444 | 7.3:+24330849 | MS.gene52324:CDS |
CCAAAAGCCAAGATAGTGGC+AGG | 0.486045 | 7.3:-24329167 | None:intergenic |
GATTCTGATGGCGCGATTGA+CGG | 0.486855 | 7.3:+24330451 | MS.gene52324:CDS |
AGACGCAAGACAAGATTTAG+TGG | 0.491668 | 7.3:+24329979 | MS.gene52324:CDS |
GGAGTTTCTCCTCCTTAAGC+TGG | 0.496268 | 7.3:-24330657 | None:intergenic |
GGACAGGCGCTCTTCGGTGA+TGG | 0.496787 | 7.3:+24330337 | MS.gene52324:CDS |
TGGCAGGGCCATTGGAACGC+TGG | 0.506301 | 7.3:-24329151 | None:intergenic |
GAGGAAGGAAAGATTACAAC+CGG | 0.506324 | 7.3:+24330769 | MS.gene52324:CDS |
ATATTCTTTGAGATAATCCC+AGG | 0.507044 | 7.3:-24330520 | None:intergenic |
TATCAACAAGGTTGTTTCGC+GGG | 0.508757 | 7.3:+24330184 | MS.gene52324:CDS |
TCTAAAATAGCCGGTCCACC+TGG | 0.512147 | 7.3:-24330616 | None:intergenic |
ACTCATTTAGATTCACTCGT+TGG | 0.521614 | 7.3:+24330316 | MS.gene52324:CDS |
TATCAACTCACCAAACTCCT+AGG | 0.522602 | 7.3:+24330130 | MS.gene52324:CDS |
ACTATTCTTCCTGATTCTGA+TGG | 0.527847 | 7.3:+24330439 | MS.gene52324:CDS |
ATCATAAGACGTTTGACAGA+TGG | 0.530194 | 7.3:-24330160 | None:intergenic |
GATTACAACCGGTGAAGGGT+TGG | 0.533434 | 7.3:+24330780 | MS.gene52324:CDS |
GACGGACATCTCCGTGAAGT+GGG | 0.533514 | 7.3:+24330469 | MS.gene52324:CDS |
GGAAAGATTACAACCGGTGA+AGG | 0.534145 | 7.3:+24330775 | MS.gene52324:CDS |
ACCCCATTCCAACCCTTCAC+CGG | 0.535927 | 7.3:-24330788 | None:intergenic |
GGTTGCACATCCAGGTGGAC+CGG | 0.539349 | 7.3:+24330606 | MS.gene52324:CDS |
CGTAAGGCCCAGCGTTCCAA+TGG | 0.541209 | 7.3:+24329143 | MS.gene52324:CDS |
TGAATCTAAATGAGTATCTG+AGG | 0.542527 | 7.3:-24330308 | None:intergenic |
TAAGCACGTGCCGAGTGGAC+CGG | 0.545653 | 7.3:-24330678 | None:intergenic |
ATCACTGCAGTTACTTTCCG+TGG | 0.546031 | 7.3:+24330283 | MS.gene52324:CDS |
AAGACAAGATTTAGTGGTAG+TGG | 0.551243 | 7.3:+24329985 | MS.gene52324:CDS |
AATGAGGAAGAGGTCTAAGG+AGG | 0.556587 | 7.3:+24330750 | MS.gene52324:CDS |
CGCAGCAATGATTATTGGTG+CGG | 0.566927 | 7.3:+24330363 | MS.gene52324:CDS |
AGTGCCAAAAGCCAAGATAG+TGG | 0.568559 | 7.3:-24329171 | None:intergenic |
AGGTTGTTTCGCGGGAGGCA+CGG | 0.569106 | 7.3:+24330192 | MS.gene52324:CDS |
TCAACCTGGTCTAAAATAGC+CGG | 0.571383 | 7.3:-24330625 | None:intergenic |
TGACGGACATCTCCGTGAAG+TGG | 0.571758 | 7.3:+24330468 | MS.gene52324:CDS |
TCTTGTCTTGCGTCTAGTGA+TGG | 0.572336 | 7.3:-24329971 | None:intergenic |
GTGAGTTGATAATCGGCACC+AGG | 0.578548 | 7.3:-24330118 | None:intergenic |
CAGCAAGATCTTTCGCTAAG+CGG | 0.579250 | 7.3:-24330219 | None:intergenic |
GTATCAACAAGGTTGTTTCG+CGG | 0.586557 | 7.3:+24330183 | MS.gene52324:CDS |
ATCAGTCATGTGCTCACTGT+TGG | 0.589052 | 7.3:-24329252 | None:intergenic |
AGGAGAAACTCCGGTCCACT+CGG | 0.589454 | 7.3:+24330668 | MS.gene52324:CDS |
ACTTCCGGTGTAGACATGCC+TGG | 0.590702 | 7.3:+24330100 | MS.gene52324:CDS |
GACTGTGGAGGAGATTCGTA+AGG | 0.592615 | 7.3:+24329127 | MS.gene52324:CDS |
AGTTACACAGTGAGAAGGAG+TGG | 0.595844 | 7.3:-24329195 | None:intergenic |
GCTTGAGTTACACAGTGAGA+AGG | 0.600695 | 7.3:-24329200 | None:intergenic |
ATGAAGCACAACTGTCTCAA+CGG | 0.606270 | 7.3:-24330839 | None:intergenic |
CGCACCAATAATCATTGCTG+CGG | 0.611377 | 7.3:-24330362 | None:intergenic |
CAACAAGGTTGTTTCGCGGG+AGG | 0.611947 | 7.3:+24330187 | MS.gene52324:CDS |
ACCGGTGAAGGGTTGGAATG+GGG | 0.617268 | 7.3:+24330787 | MS.gene52324:CDS |
AGCTTAAGGAGGAGAAACTC+CGG | 0.618441 | 7.3:+24330659 | MS.gene52324:CDS |
GTAGTGGAAGTACCAAAGCT+AGG | 0.621351 | 7.3:+24330001 | MS.gene52324:CDS |
TTCACTAAGCACGTGCCGAG+TGG | 0.624156 | 7.3:-24330683 | None:intergenic |
CTCCACAACAATGGTGACTG+TGG | 0.635767 | 7.3:+24329112 | None:intergenic |
GAAAGATTACAACCGGTGAA+GGG | 0.636251 | 7.3:+24330776 | MS.gene52324:CDS |
GGCACCAGGCATGTCTACAC+CGG | 0.638697 | 7.3:-24330104 | None:intergenic |
CGTCTTATGATGTATCAACA+AGG | 0.644298 | 7.3:+24330172 | MS.gene52324:CDS |
AATGAGTATCTGAGGGACCA+CGG | 0.649307 | 7.3:-24330300 | None:intergenic |
GAATCTAAATGAGTATCTGA+GGG | 0.650511 | 7.3:-24330307 | None:intergenic |
CACAACAATGGTGACTGTGG+AGG | 0.652306 | 7.3:+24329115 | None:intergenic |
ACTGTCTCAACGGTTAAACC+CGG | 0.657521 | 7.3:-24330829 | None:intergenic |
ACGGACATCTCCGTGAAGTG+GGG | 0.663210 | 7.3:+24330470 | MS.gene52324:CDS |
CAAAAGCCAAGATAGTGGCA+GGG | 0.697505 | 7.3:-24329166 | None:intergenic |
AAGTAGTGCAGAAAACGACG+TGG | 0.725308 | 7.3:-24330081 | None:intergenic |
AGTAGTGCAGAAAACGACGT+GGG | 0.726814 | 7.3:-24330080 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | GGATTTTTTTAAAATGTTAT+TGG | - | chr7.3:24329616-24329635 | None:intergenic | 15.0% |
!! | GATCATTATACTAATGATTA+CGG | - | chr7.3:24329637-24329656 | None:intergenic | 20.0% |
!!! | ATCTCTTGTATTTTTCTTTT+TGG | + | chr7.3:24329834-24329853 | MS.gene52324:intron | 20.0% |
! | AAAATGTAACCATTACATCA+AGG | - | chr7.3:24329787-24329806 | None:intergenic | 25.0% |
! | AAAGAATATTGAGAAGAGTT+TGG | + | chr7.3:24330534-24330553 | MS.gene52324:CDS | 25.0% |
! | TCAAAAATTGTGACATGAAA+AGG | - | chr7.3:24329703-24329722 | None:intergenic | 25.0% |
!! | CAACATGTAACATGAAATTT+TGG | - | chr7.3:24329457-24329476 | None:intergenic | 25.0% |
!! | TAATTCACAACAAAAAGTGT+CGG | - | chr7.3:24329418-24329437 | None:intergenic | 25.0% |
!!! | ATAGATTATAGCTGTTTTTG+AGG | + | chr7.3:24329374-24329393 | MS.gene52324:intron | 25.0% |
!!! | TGCTTGTGTTTTGTTTATTT+TGG | + | chr7.3:24330723-24330742 | MS.gene52324:CDS | 25.0% |
!!! | TGTTTATTTTGGATGAAATG+AGG | + | chr7.3:24330734-24330753 | MS.gene52324:CDS | 25.0% |
CATCAAAAACCTTGATGTAA+TGG | + | chr7.3:24329775-24329794 | MS.gene52324:intron | 30.0% | |
GAATCTAAATGAGTATCTGA+GGG | - | chr7.3:24330310-24330329 | None:intergenic | 30.0% | |
TGAATCTAAATGAGTATCTG+AGG | - | chr7.3:24330311-24330330 | None:intergenic | 30.0% | |
TGATGAGTATGACTAAAAAC+TGG | - | chr7.3:24329676-24329695 | None:intergenic | 30.0% | |
TTCCAATCACTTATTCCAAT+TGG | - | chr7.3:24330574-24330593 | None:intergenic | 30.0% | |
! | TGATTGGAATTCGATCTTTT+GGG | + | chr7.3:24330585-24330604 | MS.gene52324:CDS | 30.0% |
!! | ATATTCTTTGAGATAATCCC+AGG | - | chr7.3:24330523-24330542 | None:intergenic | 30.0% |
!!! | CTGAACTTTTTGCTTTTTTC+AGG | + | chr7.3:24329863-24329882 | MS.gene52324:intron | 30.0% |
AAAAAAAGCCATAGCCGAAT+GGG | + | chr7.3:24330036-24330055 | MS.gene52324:CDS | 35.0% | |
AAGACAAGATTTAGTGGTAG+TGG | + | chr7.3:24329985-24330004 | MS.gene52324:CDS | 35.0% | |
ACTATTCTTCCTGATTCTGA+TGG | + | chr7.3:24330439-24330458 | MS.gene52324:CDS | 35.0% | |
ACTCATTTAGATTCACTCGT+TGG | + | chr7.3:24330316-24330335 | MS.gene52324:CDS | 35.0% | |
ATCATAAGACGTTTGACAGA+TGG | - | chr7.3:24330163-24330182 | None:intergenic | 35.0% | |
CACCAATTGGAATAAGTGAT+TGG | + | chr7.3:24330569-24330588 | MS.gene52324:CDS | 35.0% | |
CGTCTTATGATGTATCAACA+AGG | + | chr7.3:24330172-24330191 | MS.gene52324:CDS | 35.0% | |
GTGATACGAAAGTAGTAATC+AGG | - | chr7.3:24329233-24329252 | None:intergenic | 35.0% | |
TATTGAGAAGAGTTTGGTTG+AGG | + | chr7.3:24330540-24330559 | MS.gene52324:CDS | 35.0% | |
TGAAGAAAAACTCCAGCTTA+AGG | + | chr7.3:24330645-24330664 | MS.gene52324:CDS | 35.0% | |
! | ATCTTCTGAAAGATGTTCCT+GGG | + | chr7.3:24330503-24330522 | MS.gene52324:CDS | 35.0% |
! | GTGATTGGAATTCGATCTTT+TGG | + | chr7.3:24330584-24330603 | MS.gene52324:CDS | 35.0% |
! | TTTTGGATGAAATGAGGAAG+AGG | + | chr7.3:24330740-24330759 | MS.gene52324:CDS | 35.0% |
!! | AAAAAGTGTCGGTTTCTCAT+AGG | - | chr7.3:24329407-24329426 | None:intergenic | 35.0% |
!! | GAGTTTGGTGAGTTGATAAT+CGG | - | chr7.3:24330128-24330147 | None:intergenic | 35.0% |
!!! | TCCGATTTTTGAGATTGTCT+CGG | + | chr7.3:24330408-24330427 | MS.gene52324:CDS | 35.0% |
AAAAAAGCCATAGCCGAATG+GGG | + | chr7.3:24330037-24330056 | MS.gene52324:CDS | 40.0% | |
AGAAAAACTCCAGCTTAAGG+AGG | + | chr7.3:24330648-24330667 | MS.gene52324:CDS | 40.0% | |
AGACGCAAGACAAGATTTAG+TGG | + | chr7.3:24329979-24329998 | MS.gene52324:CDS | 40.0% | |
AGTTGTGCTTCATAGTGTTC+CGG | + | chr7.3:24330849-24330868 | MS.gene52324:CDS | 40.0% | |
ATGAAGCACAACTGTCTCAA+CGG | - | chr7.3:24330842-24330861 | None:intergenic | 40.0% | |
CAAAAAAAGCCATAGCCGAA+TGG | + | chr7.3:24330035-24330054 | MS.gene52324:CDS | 40.0% | |
GAAAGATTACAACCGGTGAA+GGG | + | chr7.3:24330776-24330795 | MS.gene52324:CDS | 40.0% | |
GAGGAAGGAAAGATTACAAC+CGG | + | chr7.3:24330769-24330788 | MS.gene52324:CDS | 40.0% | |
GCCGAGACAATCTCAAAAAT+CGG | - | chr7.3:24330412-24330431 | None:intergenic | 40.0% | |
TATCAACTCACCAAACTCCT+AGG | + | chr7.3:24330130-24330149 | MS.gene52324:CDS | 40.0% | |
TCCAAACATGTGTGCATACA+TGG | + | chr7.3:24329946-24329965 | MS.gene52324:CDS | 40.0% | |
TGAAATGAGGAAGAGGTCTA+AGG | + | chr7.3:24330747-24330766 | MS.gene52324:CDS | 40.0% | |
TGAGCACATGACTGATCTTA+AGG | + | chr7.3:24329259-24329278 | MS.gene52324:CDS | 40.0% | |
TTTAGATTCACTCGTTGGAC+AGG | + | chr7.3:24330321-24330340 | MS.gene52324:CDS | 40.0% | |
! | ACGTGGGTGATTTTGGATTT+TGG | - | chr7.3:24330067-24330086 | None:intergenic | 40.0% |
! | CATCTTCTGAAAGATGTTCC+TGG | + | chr7.3:24330502-24330521 | MS.gene52324:CDS | 40.0% |
! | GTATCAACAAGGTTGTTTCG+CGG | + | chr7.3:24330183-24330202 | MS.gene52324:CDS | 40.0% |
! | TATCAACAAGGTTGTTTCGC+GGG | + | chr7.3:24330184-24330203 | MS.gene52324:CDS | 40.0% |
! | TCAACCTGGTCTAAAATAGC+CGG | - | chr7.3:24330628-24330647 | None:intergenic | 40.0% |
!! | TTGGAATGGGGTGTTTTGTT+TGG | + | chr7.3:24330799-24330818 | MS.gene52324:CDS | 40.0% |
!!! | TGGAATGGGGTGTTTTGTTT+GGG | + | chr7.3:24330800-24330819 | MS.gene52324:CDS | 40.0% |
!!! | TGTTTTGTTTGGGTTTGGAC+CGG | + | chr7.3:24330810-24330829 | MS.gene52324:CDS | 40.0% |
AAGTAGTGCAGAAAACGACG+TGG | - | chr7.3:24330084-24330103 | None:intergenic | 45.0% | |
AATGAGGAAGAGGTCTAAGG+AGG | + | chr7.3:24330750-24330769 | MS.gene52324:CDS | 45.0% | |
AATGAGTATCTGAGGGACCA+CGG | - | chr7.3:24330303-24330322 | None:intergenic | 45.0% | |
ACTGTCTCAACGGTTAAACC+CGG | - | chr7.3:24330832-24330851 | None:intergenic | 45.0% | |
AGCTTAAGGAGGAGAAACTC+CGG | + | chr7.3:24330659-24330678 | MS.gene52324:CDS | 45.0% | |
AGTAGTGCAGAAAACGACGT+GGG | - | chr7.3:24330083-24330102 | None:intergenic | 45.0% | |
AGTGCCAAAAGCCAAGATAG+TGG | - | chr7.3:24329174-24329193 | None:intergenic | 45.0% | |
AGTTACACAGTGAGAAGGAG+TGG | - | chr7.3:24329198-24329217 | None:intergenic | 45.0% | |
ATCAGTCATGTGCTCACTGT+TGG | - | chr7.3:24329255-24329274 | None:intergenic | 45.0% | |
CAGCAAGATCTTTCGCTAAG+CGG | - | chr7.3:24330222-24330241 | None:intergenic | 45.0% | |
CGCACCAATAATCATTGCTG+CGG | - | chr7.3:24330365-24330384 | None:intergenic | 45.0% | |
CGCAGCAATGATTATTGGTG+CGG | + | chr7.3:24330363-24330382 | MS.gene52324:CDS | 45.0% | |
CTTCATAGTGTTCCGGTTCA+GGG | + | chr7.3:24330856-24330875 | MS.gene52324:CDS | 45.0% | |
GACGTTTGACAGATGGTTTC+AGG | - | chr7.3:24330156-24330175 | None:intergenic | 45.0% | |
GCAGCATCTTTACCTAGCTT+TGG | - | chr7.3:24330016-24330035 | None:intergenic | 45.0% | |
GCCATGTATGCACACATGTT+TGG | - | chr7.3:24329950-24329969 | None:intergenic | 45.0% | |
GCTTGAGTTACACAGTGAGA+AGG | - | chr7.3:24329203-24329222 | None:intergenic | 45.0% | |
GGAAAGATTACAACCGGTGA+AGG | + | chr7.3:24330775-24330794 | MS.gene52324:CDS | 45.0% | |
GGACGCTCAACAGTTAAATC+TGG | - | chr7.3:24330391-24330410 | None:intergenic | 45.0% | |
TCTTGTCTTGCGTCTAGTGA+TGG | - | chr7.3:24329974-24329993 | None:intergenic | 45.0% | |
! | ATCACTGCAGTTACTTTCCG+TGG | + | chr7.3:24330283-24330302 | MS.gene52324:CDS | 45.0% |
! | CAAAAGCCAAGATAGTGGCA+GGG | - | chr7.3:24329169-24329188 | None:intergenic | 45.0% |
! | GAAAACGACGTGGGTGATTT+TGG | - | chr7.3:24330074-24330093 | None:intergenic | 45.0% |
! | GCTGGAGTTTTTCTTCAACC+TGG | - | chr7.3:24330642-24330661 | None:intergenic | 45.0% |
! | GTTGAGGCTTTTGCACCAAT+TGG | + | chr7.3:24330556-24330575 | MS.gene52324:CDS | 45.0% |
!! | GTAGTGGAAGTACCAAAGCT+AGG | + | chr7.3:24330001-24330020 | MS.gene52324:CDS | 45.0% |
!! | GTCGTTTTCTGCACTACTTC+CGG | + | chr7.3:24330085-24330104 | MS.gene52324:CDS | 45.0% |
!!! | ATCTTTTGGGTTGCACATCC+AGG | + | chr7.3:24330598-24330617 | MS.gene52324:CDS | 45.0% |
!!! | GGATTTTGGTTGACCCCATT+CGG | - | chr7.3:24330053-24330072 | None:intergenic | 45.0% |
!!! | GTTTTGTTTGGGTTTGGACC+GGG | + | chr7.3:24330811-24330830 | MS.gene52324:CDS | 45.0% |
!!! | TGGGGTGTTTTGTTTGGGTT+TGG | + | chr7.3:24330805-24330824 | MS.gene52324:CDS | 45.0% |
AACCGGTGAAGGGTTGGAAT+GGG | + | chr7.3:24330786-24330805 | MS.gene52324:CDS | 50.0% | |
AGGAAGAGGTCTAAGGAGGA+AGG | + | chr7.3:24330754-24330773 | MS.gene52324:CDS | 50.0% | |
CGGCACGTGCTTAGTGAATA+TGG | + | chr7.3:24330688-24330707 | MS.gene52324:CDS | 50.0% | |
GAAAAGTGAGCCCCACTTCA+CGG | - | chr7.3:24330483-24330502 | None:intergenic | 50.0% | |
GACTGTGGAGGAGATTCGTA+AGG | + | chr7.3:24329127-24329146 | MS.gene52324:CDS | 50.0% | |
GATTACAACCGGTGAAGGGT+TGG | + | chr7.3:24330780-24330799 | MS.gene52324:CDS | 50.0% | |
GCTTCATAGTGTTCCGGTTC+AGG | + | chr7.3:24330855-24330874 | MS.gene52324:CDS | 50.0% | |
GGAGCCGCAGCAATGATTAT+TGG | + | chr7.3:24330358-24330377 | MS.gene52324:CDS | 50.0% | |
GGAGTTTCTCCTCCTTAAGC+TGG | - | chr7.3:24330660-24330679 | None:intergenic | 50.0% | |
TCAATCGCGCCATCAGAATC+AGG | - | chr7.3:24330451-24330470 | None:intergenic | 50.0% | |
TGACAGATGGTTTCAGGCCT+AGG | - | chr7.3:24330150-24330169 | None:intergenic | 50.0% | |
TGGTTTCAGGCCTAGGAGTT+TGG | - | chr7.3:24330143-24330162 | None:intergenic | 50.0% | |
! | CCAAAAGCCAAGATAGTGGC+AGG | - | chr7.3:24329170-24329189 | None:intergenic | 50.0% |
! | GATTCTGATGGCGCGATTGA+CGG | + | chr7.3:24330451-24330470 | MS.gene52324:CDS | 50.0% |
! | TCTAAAATAGCCGGTCCACC+TGG | - | chr7.3:24330619-24330638 | None:intergenic | 50.0% |
!! | CCTGCCACTATCTTGGCTTT+TGG | + | chr7.3:24329167-24329186 | MS.gene52324:CDS | 50.0% |
!! | GTGAGTTGATAATCGGCACC+AGG | - | chr7.3:24330121-24330140 | None:intergenic | 50.0% |
!! | TGGACCGGCTATTTTAGACC+AGG | + | chr7.3:24330621-24330640 | MS.gene52324:CDS | 50.0% |
!!! | TTTTGGGTTGCACATCCAGG+TGG | + | chr7.3:24330601-24330620 | MS.gene52324:CDS | 50.0% |
ACCCCATTCCAACCCTTCAC+CGG | - | chr7.3:24330791-24330810 | None:intergenic | 55.0% | |
ACCGGTGAAGGGTTGGAATG+GGG | + | chr7.3:24330787-24330806 | MS.gene52324:CDS | 55.0% | |
ACGGACATCTCCGTGAAGTG+GGG | + | chr7.3:24330470-24330489 | MS.gene52324:CDS | 55.0% | |
ACTTCCGGTGTAGACATGCC+TGG | + | chr7.3:24330100-24330119 | MS.gene52324:CDS | 55.0% | |
AGGAGAAACTCCGGTCCACT+CGG | + | chr7.3:24330668-24330687 | MS.gene52324:CDS | 55.0% | |
CAACCGGTGAAGGGTTGGAA+TGG | + | chr7.3:24330785-24330804 | MS.gene52324:CDS | 55.0% | |
CAATGGCCCTGCCACTATCT+TGG | + | chr7.3:24329160-24329179 | MS.gene52324:CDS | 55.0% | |
GACGGACATCTCCGTGAAGT+GGG | + | chr7.3:24330469-24330488 | MS.gene52324:CDS | 55.0% | |
TGGTTGACCCCATTCGGCTA+TGG | - | chr7.3:24330047-24330066 | None:intergenic | 55.0% | |
TTCACTAAGCACGTGCCGAG+TGG | - | chr7.3:24330686-24330705 | None:intergenic | 55.0% | |
! | CAACAAGGTTGTTTCGCGGG+AGG | + | chr7.3:24330187-24330206 | MS.gene52324:CDS | 55.0% |
! | CAAGATAGTGGCAGGGCCAT+TGG | - | chr7.3:24329162-24329181 | None:intergenic | 55.0% |
! | TGACGGACATCTCCGTGAAG+TGG | + | chr7.3:24330468-24330487 | MS.gene52324:CDS | 55.0% |
CGTAAGGCCCAGCGTTCCAA+TGG | + | chr7.3:24329143-24329162 | MS.gene52324:CDS | 60.0% | |
CTCGTTGGACAGGCGCTCTT+CGG | + | chr7.3:24330331-24330350 | MS.gene52324:CDS | 60.0% | |
GGCACCAGGCATGTCTACAC+CGG | - | chr7.3:24330107-24330126 | None:intergenic | 60.0% | |
GGTTGCACATCCAGGTGGAC+CGG | + | chr7.3:24330606-24330625 | MS.gene52324:CDS | 60.0% | |
TAAGCACGTGCCGAGTGGAC+CGG | - | chr7.3:24330681-24330700 | None:intergenic | 60.0% | |
! | AGGTTGTTTCGCGGGAGGCA+CGG | + | chr7.3:24330192-24330211 | MS.gene52324:CDS | 60.0% |
GGACAGGCGCTCTTCGGTGA+TGG | + | chr7.3:24330337-24330356 | MS.gene52324:CDS | 65.0% | |
GGCAGGGCCATTGGAACGCT+GGG | - | chr7.3:24329153-24329172 | None:intergenic | 65.0% | |
TGGCAGGGCCATTGGAACGC+TGG | - | chr7.3:24329154-24329173 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.3 | gene | 24329122 | 24330882 | 24329122 | ID=MS.gene52324 |
chr7.3 | mRNA | 24329122 | 24330882 | 24329122 | ID=MS.gene52324.t1;Parent=MS.gene52324 |
chr7.3 | exon | 24329122 | 24329299 | 24329122 | ID=MS.gene52324.t1.exon1;Parent=MS.gene52324.t1 |
chr7.3 | CDS | 24329122 | 24329299 | 24329122 | ID=cds.MS.gene52324.t1;Parent=MS.gene52324.t1 |
chr7.3 | exon | 24329885 | 24330882 | 24329885 | ID=MS.gene52324.t1.exon2;Parent=MS.gene52324.t1 |
chr7.3 | CDS | 24329885 | 24330882 | 24329885 | ID=cds.MS.gene52324.t1;Parent=MS.gene52324.t1 |
Gene Sequence |
Protein sequence |