Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60150.t1 | XP_003609376.2 | 95.1 | 225 | 10 | 1 | 1 | 225 | 256 | 479 | 2.70E-111 | 411.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60150.t1 | E5KGE0 | 59.3 | 226 | 88 | 3 | 1 | 225 | 266 | 488 | 5.1e-66 | 252.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60150.t1 | G7JE65 | 95.1 | 225 | 10 | 1 | 1 | 225 | 256 | 479 | 2.0e-111 | 411.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene04918 | MS.gene60150 | 0.849763 | 2.62E-60 | -1.69E-46 |
MS.gene04919 | MS.gene60150 | 0.806177 | 9.34E-50 | -1.69E-46 |
MS.gene04920 | MS.gene60150 | 0.82142 | 4.08E-53 | -1.69E-46 |
MS.gene049283 | MS.gene60150 | 0.875032 | 4.24E-68 | -1.69E-46 |
MS.gene049368 | MS.gene60150 | 0.846702 | 1.84E-59 | -1.69E-46 |
MS.gene049419 | MS.gene60150 | -0.816412 | 5.61E-52 | -1.69E-46 |
MS.gene049499 | MS.gene60150 | 0.867818 | 1.03E-65 | -1.69E-46 |
MS.gene049983 | MS.gene60150 | 0.855342 | 6.73E-62 | -1.69E-46 |
MS.gene04998 | MS.gene60150 | 0.821947 | 3.08E-53 | -1.69E-46 |
MS.gene050414 | MS.gene60150 | 0.838809 | 2.31E-57 | -1.69E-46 |
MS.gene050646 | MS.gene60150 | 0.83705 | 6.53E-57 | -1.69E-46 |
MS.gene050654 | MS.gene60150 | 0.852853 | 3.51E-61 | -1.69E-46 |
MS.gene050945 | MS.gene60150 | 0.809821 | 1.57E-50 | -1.69E-46 |
MS.gene051043 | MS.gene60150 | 0.826437 | 2.71E-54 | -1.69E-46 |
MS.gene051184 | MS.gene60150 | 0.810372 | 1.19E-50 | -1.69E-46 |
MS.gene051275 | MS.gene60150 | 0.800951 | 1.13E-48 | -1.69E-46 |
MS.gene051541 | MS.gene60150 | 0.828514 | 8.62E-55 | -1.69E-46 |
MS.gene051676 | MS.gene60150 | 0.823163 | 1.61E-53 | -1.69E-46 |
MS.gene051699 | MS.gene60150 | 0.801219 | 9.98E-49 | -1.69E-46 |
MS.gene051902 | MS.gene60150 | 0.830268 | 3.23E-55 | -1.69E-46 |
MS.gene051975 | MS.gene60150 | 0.820347 | 7.20E-53 | -1.69E-46 |
MS.gene052016 | MS.gene60150 | 0.84541 | 4.13E-59 | -1.69E-46 |
MS.gene052052 | MS.gene60150 | 0.800758 | 1.24E-48 | -1.69E-46 |
MS.gene052072 | MS.gene60150 | 0.803202 | 3.90E-49 | -1.69E-46 |
MS.gene052118 | MS.gene60150 | 0.837653 | 4.58E-57 | -1.69E-46 |
MS.gene052197 | MS.gene60150 | 0.804774 | 1.84E-49 | -1.69E-46 |
MS.gene052296 | MS.gene60150 | 0.82049 | 6.67E-53 | -1.69E-46 |
MS.gene052434 | MS.gene60150 | 0.810044 | 1.40E-50 | -1.69E-46 |
MS.gene052463 | MS.gene60150 | 0.832932 | 7.13E-56 | -1.69E-46 |
MS.gene052493 | MS.gene60150 | 0.814852 | 1.25E-51 | -1.69E-46 |
MS.gene052518 | MS.gene60150 | 0.801185 | 1.01E-48 | -1.69E-46 |
MS.gene052533 | MS.gene60150 | 0.817986 | 2.48E-52 | -1.69E-46 |
MS.gene052534 | MS.gene60150 | 0.801994 | 6.92E-49 | -1.69E-46 |
MS.gene052932 | MS.gene60150 | 0.801397 | 9.18E-49 | -1.69E-46 |
MS.gene053298 | MS.gene60150 | 0.850643 | 1.49E-60 | -1.69E-46 |
MS.gene053726 | MS.gene60150 | 0.830272 | 3.22E-55 | -1.69E-46 |
MS.gene053879 | MS.gene60150 | 0.818904 | 1.54E-52 | -1.69E-46 |
MS.gene053931 | MS.gene60150 | 0.813693 | 2.25E-51 | -1.69E-46 |
MS.gene053963 | MS.gene60150 | 0.828369 | 9.34E-55 | -1.69E-46 |
MS.gene054178 | MS.gene60150 | 0.818303 | 2.10E-52 | -1.69E-46 |
MS.gene054222 | MS.gene60150 | 0.811861 | 5.66E-51 | -1.69E-46 |
MS.gene054479 | MS.gene60150 | 0.834233 | 3.37E-56 | -1.69E-46 |
MS.gene054576 | MS.gene60150 | 0.810696 | 1.01E-50 | -1.69E-46 |
MS.gene05458 | MS.gene60150 | 0.833467 | 5.24E-56 | -1.69E-46 |
MS.gene054892 | MS.gene60150 | 0.87273 | 2.54E-67 | -1.69E-46 |
MS.gene054893 | MS.gene60150 | 0.872659 | 2.68E-67 | -1.69E-46 |
MS.gene054957 | MS.gene60150 | 0.820205 | 7.76E-53 | -1.69E-46 |
MS.gene05539 | MS.gene60150 | 0.829474 | 5.04E-55 | -1.69E-46 |
MS.gene055513 | MS.gene60150 | 0.818685 | 1.72E-52 | -1.69E-46 |
MS.gene055841 | MS.gene60150 | 0.810802 | 9.62E-51 | -1.69E-46 |
MS.gene055864 | MS.gene60150 | 0.840204 | 1.00E-57 | -1.69E-46 |
MS.gene056045 | MS.gene60150 | 0.815718 | 8.01E-52 | -1.69E-46 |
MS.gene05624 | MS.gene60150 | 0.80103 | 1.09E-48 | -1.69E-46 |
MS.gene056699 | MS.gene60150 | 0.806825 | 6.82E-50 | -1.69E-46 |
MS.gene05686 | MS.gene60150 | 0.830423 | 2.96E-55 | -1.69E-46 |
MS.gene056973 | MS.gene60150 | 0.808019 | 3.80E-50 | -1.69E-46 |
MS.gene056986 | MS.gene60150 | 0.808026 | 3.79E-50 | -1.69E-46 |
MS.gene057102 | MS.gene60150 | 0.830429 | 2.95E-55 | -1.69E-46 |
MS.gene057155 | MS.gene60150 | 0.845578 | 3.72E-59 | -1.69E-46 |
MS.gene057208 | MS.gene60150 | 0.840987 | 6.24E-58 | -1.69E-46 |
MS.gene057611 | MS.gene60150 | 0.805463 | 1.32E-49 | -1.69E-46 |
MS.gene057622 | MS.gene60150 | 0.845122 | 4.94E-59 | -1.69E-46 |
MS.gene057890 | MS.gene60150 | -0.805234 | 1.47E-49 | -1.69E-46 |
MS.gene057919 | MS.gene60150 | 0.800842 | 1.19E-48 | -1.69E-46 |
MS.gene058081 | MS.gene60150 | 0.823763 | 1.16E-53 | -1.69E-46 |
MS.gene058159 | MS.gene60150 | 0.866795 | 2.20E-65 | -1.69E-46 |
MS.gene058279 | MS.gene60150 | 0.825905 | 3.63E-54 | -1.69E-46 |
MS.gene058292 | MS.gene60150 | 0.808593 | 2.87E-50 | -1.69E-46 |
MS.gene058429 | MS.gene60150 | 0.856616 | 2.85E-62 | -1.69E-46 |
MS.gene058781 | MS.gene60150 | 0.812413 | 4.29E-51 | -1.69E-46 |
MS.gene059146 | MS.gene60150 | 0.816017 | 6.87E-52 | -1.69E-46 |
MS.gene059170 | MS.gene60150 | 0.831748 | 1.40E-55 | -1.69E-46 |
MS.gene05952 | MS.gene60150 | 0.831867 | 1.31E-55 | -1.69E-46 |
MS.gene05985 | MS.gene60150 | -0.849022 | 4.22E-60 | -1.69E-46 |
MS.gene059901 | MS.gene60150 | -0.816405 | 5.62E-52 | -1.69E-46 |
MS.gene06010 | MS.gene60150 | 0.80082 | 1.20E-48 | -1.69E-46 |
MS.gene060259 | MS.gene60150 | 0.852791 | 3.66E-61 | -1.69E-46 |
MS.gene060412 | MS.gene60150 | 0.821417 | 4.08E-53 | -1.69E-46 |
MS.gene060413 | MS.gene60150 | 0.81224 | 4.68E-51 | -1.69E-46 |
MS.gene060435 | MS.gene60150 | 0.855955 | 4.46E-62 | -1.69E-46 |
MS.gene060520 | MS.gene60150 | 0.806548 | 7.80E-50 | -1.69E-46 |
MS.gene060527 | MS.gene60150 | 0.817123 | 3.88E-52 | -1.69E-46 |
MS.gene060763 | MS.gene60150 | 0.804742 | 1.87E-49 | -1.69E-46 |
MS.gene060851 | MS.gene60150 | 0.811106 | 8.27E-51 | -1.69E-46 |
MS.gene060852 | MS.gene60150 | 0.809819 | 1.57E-50 | -1.69E-46 |
MS.gene060932 | MS.gene60150 | 0.8259 | 3.64E-54 | -1.69E-46 |
MS.gene060933 | MS.gene60150 | 0.853696 | 2.02E-61 | -1.69E-46 |
MS.gene060935 | MS.gene60150 | 0.845945 | 2.96E-59 | -1.69E-46 |
MS.gene060937 | MS.gene60150 | 0.8678 | 1.05E-65 | -1.69E-46 |
MS.gene061100 | MS.gene60150 | 0.817825 | 2.70E-52 | -1.69E-46 |
MS.gene061160 | MS.gene60150 | 0.80752 | 4.86E-50 | -1.69E-46 |
MS.gene061188 | MS.gene60150 | 0.802375 | 5.78E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60150.t1 | MTR_4g114970 | 95.111 | 225 | 10 | 1 | 1 | 225 | 256 | 479 | 2.51e-155 | 439 |
MS.gene60150.t1 | MTR_4g114970 | 93.478 | 138 | 8 | 1 | 1 | 138 | 256 | 392 | 1.77e-87 | 265 |
MS.gene60150.t1 | MTR_2g104600 | 41.709 | 199 | 106 | 4 | 3 | 200 | 209 | 398 | 1.50e-42 | 148 |
MS.gene60150.t1 | MTR_2g104600 | 41.709 | 199 | 106 | 4 | 3 | 200 | 225 | 414 | 1.79e-42 | 149 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60150.t1 | AT2G42160 | 59.292 | 226 | 88 | 3 | 1 | 225 | 266 | 488 | 1.96e-88 | 269 |
MS.gene60150.t1 | AT2G42160 | 58.889 | 180 | 72 | 1 | 1 | 180 | 266 | 443 | 6.09e-69 | 218 |
MS.gene60150.t1 | AT2G42160 | 60.870 | 138 | 52 | 1 | 1 | 138 | 266 | 401 | 4.24e-53 | 176 |
MS.gene60150.t1 | AT2G26000 | 40.000 | 175 | 102 | 2 | 3 | 177 | 261 | 432 | 5.43e-38 | 137 |
MS.gene60150.t1 | AT2G26000 | 40.000 | 175 | 102 | 2 | 3 | 177 | 261 | 432 | 5.43e-38 | 137 |
MS.gene60150.t1 | AT2G26000 | 33.714 | 175 | 95 | 3 | 3 | 177 | 261 | 414 | 1.25e-25 | 103 |
Find 43 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGTGAAGATTTAGAAGTTAA+TGG | 0.246664 | 8.3:-12358959 | MS.gene60150:CDS |
GTGGAGAAGGCTGCAACTTC+TGG | 0.280137 | 8.3:-12357938 | MS.gene60150:CDS |
GAATGAGAGGGTCCTTGATT+TGG | 0.301939 | 8.3:-12357552 | MS.gene60150:CDS |
CATTCTGCCCTTAGGTTAAT+CGG | 0.302536 | 8.3:-12357797 | MS.gene60150:intron |
CTTAGAGCATCATGGGTATT+AGG | 0.309380 | 8.3:-12360516 | None:intergenic |
GTGAAGATTTAGAAGTTAAT+GGG | 0.313739 | 8.3:-12358958 | MS.gene60150:CDS |
GTCAGACTCAAATGGAATAA+AGG | 0.364370 | 8.3:-12357386 | MS.gene60150:CDS |
TTATGTCCATCGACTGAATC+AGG | 0.387311 | 8.3:-12359065 | MS.gene60150:CDS |
ACAACAAATTTGGGATTATG+TGG | 0.392975 | 8.3:-12359095 | MS.gene60150:CDS |
CCGTCTTCTTACATCTCAAT+TGG | 0.403056 | 8.3:-12358345 | MS.gene60150:CDS |
ACTTCTTGCCTCAATTAGTA+AGG | 0.414456 | 8.3:+12357988 | None:intergenic |
GGTCCTTGATTTGGAGGAAC+AGG | 0.415267 | 8.3:-12357543 | MS.gene60150:intron |
TTCAACTTTGCTGTTAAAGA+AGG | 0.416559 | 8.3:+12358934 | None:intergenic |
TTCTTGCTGTTTCCAGGAGA+AGG | 0.425015 | 8.3:+12357331 | None:intergenic |
GCTCATGAGCAACCTTCTCC+TGG | 0.443145 | 8.3:-12357343 | MS.gene60150:CDS |
GTTCACTGTATGTCTCTAGA+AGG | 0.443877 | 8.3:-12359004 | MS.gene60150:CDS |
GGCTGCAACTTCTGGCATGC+TGG | 0.450669 | 8.3:-12357930 | MS.gene60150:CDS |
GATAAAATGTCAGACTCAAA+TGG | 0.459339 | 8.3:-12357394 | MS.gene60150:CDS |
TTATGAATCCTTACTAATTG+AGG | 0.471285 | 8.3:-12357996 | MS.gene60150:CDS |
TGAGAGGGTCCTTGATTTGG+AGG | 0.485934 | 8.3:-12357549 | MS.gene60150:CDS |
CTTCTCCACTGCTTCAGATA+CGG | 0.513939 | 8.3:+12357952 | None:intergenic |
CAGGATCAATCTAGAATTGA+CGG | 0.519347 | 8.3:-12359046 | MS.gene60150:CDS |
TTCACTGTATGTCTCTAGAA+GGG | 0.522047 | 8.3:-12359003 | MS.gene60150:CDS |
ATTGATCCTGATTCAGTCGA+TGG | 0.544517 | 8.3:+12359059 | None:intergenic |
ATACCTGTTCCTCCAAATCA+AGG | 0.546149 | 8.3:+12357540 | None:intergenic |
CTTTAACAGCAAAGTTGAAG+CGG | 0.546937 | 8.3:-12358930 | MS.gene60150:intron |
CGTATCTGAAGCAGTGGAGA+AGG | 0.559498 | 8.3:-12357951 | MS.gene60150:CDS |
AGATTAAAGAAGCAGAAGAG+AGG | 0.561135 | 8.3:-12357740 | MS.gene60150:intron |
CAACAAATTTGGGATTATGT+GGG | 0.563048 | 8.3:-12359094 | MS.gene60150:CDS |
GAAGGTTGCTCATGAGCCAC+TGG | 0.563743 | 8.3:+12357349 | None:intergenic |
CATTGAAGTCGATGAATGAG+AGG | 0.577929 | 8.3:-12357565 | MS.gene60150:CDS |
TAGAATTGACGGCAAGTCGA+AGG | 0.578499 | 8.3:-12359035 | MS.gene60150:CDS |
AGAAAGAAATGTTGTTGCTG+AGG | 0.588529 | 8.3:-12357876 | MS.gene60150:intron |
AGACTCAAATGGAATAAAGG+AGG | 0.592588 | 8.3:-12357383 | MS.gene60150:CDS |
AAGCTCCGTATCTGAAGCAG+TGG | 0.608444 | 8.3:-12357957 | MS.gene60150:CDS |
GACTCAAATGGAATAAAGGA+GGG | 0.622185 | 8.3:-12357382 | MS.gene60150:CDS |
TGAAGATTTAGAAGTTAATG+GGG | 0.626069 | 8.3:-12358957 | MS.gene60150:CDS |
TCACTGTATGTCTCTAGAAG+GGG | 0.634476 | 8.3:-12359002 | MS.gene60150:CDS |
CCAATTGAGATGTAAGAAGA+CGG | 0.636618 | 8.3:+12358345 | None:intergenic |
AAAACAGAAAGTCTGGTCGA+AGG | 0.644959 | 8.3:-12357309 | MS.gene60150:CDS |
ACAGAAAGTCTGGTCGAAGG+CGG | 0.651997 | 8.3:-12357306 | MS.gene60150:CDS |
ATTGAAGTCGATGAATGAGA+GGG | 0.674240 | 8.3:-12357564 | MS.gene60150:CDS |
GGAGGGAACAGTCTTACCAG+TGG | 0.721862 | 8.3:-12357365 | MS.gene60150:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAATTATGAAATATTATCT+TGG | - | chr8.3:12357523-12357542 | MS.gene60150:intron | 10.0% |
!! | ATATAAAATGACAATAAAAT+GGG | + | chr8.3:12358560-12358579 | None:intergenic | 10.0% |
!! | TAATTATGAAATATTATCTT+GGG | - | chr8.3:12357524-12357543 | MS.gene60150:intron | 10.0% |
!! | TATATAAAATGACAATAAAA+TGG | + | chr8.3:12358561-12358580 | None:intergenic | 10.0% |
!!! | ATTTTATTGTCATTTTATAT+AGG | - | chr8.3:12358560-12358579 | MS.gene60150:intron | 10.0% |
!!! | TTTTTATTTTCTAAAAAACA+AGG | - | chr8.3:12358104-12358123 | MS.gene60150:intron | 10.0% |
!! | CATATAGTTATTCTATAAAT+GGG | - | chr8.3:12359258-12359277 | MS.gene60150:intron | 15.0% |
!! | CATTTATAGAATAACTATAT+GGG | + | chr8.3:12359259-12359278 | None:intergenic | 15.0% |
!! | CCAACTTAAATTAATAATTA+GGG | + | chr8.3:12358058-12358077 | None:intergenic | 15.0% |
!! | TCATAATACTAAAACAAAAA+TGG | + | chr8.3:12359795-12359814 | None:intergenic | 15.0% |
!! | TTTAAATATGTGATCATTTA+GGG | - | chr8.3:12360208-12360227 | MS.gene60150:intron | 15.0% |
!! | TTTGTTTAACATATTAAGTA+GGG | + | chr8.3:12358532-12358551 | None:intergenic | 15.0% |
!!! | AGTAAAGTTGTTTTTTTTTT+TGG | - | chr8.3:12360156-12360175 | MS.gene60150:intron | 15.0% |
!!! | ATTATAATGTTAACTTGTTA+AGG | + | chr8.3:12358981-12359000 | None:intergenic | 15.0% |
!!! | CCTAATTATTAATTTAAGTT+GGG | - | chr8.3:12358056-12358075 | MS.gene60150:intron | 15.0% |
!!! | TTTTAATCTAGATATAAAGA+AGG | - | chr8.3:12358630-12358649 | MS.gene60150:intron | 15.0% |
!!! | TTTTGTTTAACATATTAAGT+AGG | + | chr8.3:12358533-12358552 | None:intergenic | 15.0% |
!! | ACTTATGATGTTTATATTGT+AGG | - | chr8.3:12358342-12358361 | MS.gene60150:CDS | 20.0% |
!! | ATCTTCTCCAAAATTTATTT+AGG | - | chr8.3:12357807-12357826 | MS.gene60150:intron | 20.0% |
!! | CCATATAGTTATTCTATAAA+TGG | - | chr8.3:12359257-12359276 | MS.gene60150:intron | 20.0% |
!! | CCATTTATAGAATAACTATA+TGG | + | chr8.3:12359260-12359279 | None:intergenic | 20.0% |
!! | CCCAACTTAAATTAATAATT+AGG | + | chr8.3:12358059-12358078 | None:intergenic | 20.0% |
!! | CCCTAATTATTAATTTAAGT+TGG | - | chr8.3:12358055-12358074 | MS.gene60150:intron | 20.0% |
!! | GTTTAAATATGTGATCATTT+AGG | - | chr8.3:12360207-12360226 | MS.gene60150:intron | 20.0% |
!! | TCATTAAAAATTCAGAAATG+TGG | - | chr8.3:12360035-12360054 | MS.gene60150:intron | 20.0% |
!! | TGGAAATATTATTGTATTGA+TGG | - | chr8.3:12358301-12358320 | MS.gene60150:intron | 20.0% |
!! | TTAAACATGTAATGAGAATA+TGG | + | chr8.3:12360193-12360212 | None:intergenic | 20.0% |
!! | TTTATCTTTATACAAGAGTT+TGG | + | chr8.3:12357678-12357697 | None:intergenic | 20.0% |
!!! | ACTAAATGGATTTTAATATC+TGG | + | chr8.3:12358026-12358045 | None:intergenic | 20.0% |
!!! | AGTATGTCCTAAATAAATTT+TGG | + | chr8.3:12357817-12357836 | None:intergenic | 20.0% |
!!! | ATTTTAGAACACAACAAATT+TGG | - | chr8.3:12358700-12358719 | MS.gene60150:intron | 20.0% |
!!! | ATTTTATGCTGATACTAATT+TGG | - | chr8.3:12359110-12359129 | MS.gene60150:intron | 20.0% |
!!! | ATTTTCTAAAAAACAAGGAA+GGG | - | chr8.3:12358109-12358128 | MS.gene60150:intron | 20.0% |
!!! | GAGAATATCATAATTTTGTT+TGG | - | chr8.3:12357554-12357573 | MS.gene60150:CDS | 20.0% |
!!! | TATTTTCTAAAAAACAAGGA+AGG | - | chr8.3:12358108-12358127 | MS.gene60150:intron | 20.0% |
!!! | TTTTAGAACACAACAAATTT+GGG | - | chr8.3:12358701-12358720 | MS.gene60150:intron | 20.0% |
!!! | TTTTATGCTGATACTAATTT+GGG | - | chr8.3:12359111-12359130 | MS.gene60150:intron | 20.0% |
! | AAAGATAAAAGATGCAACAT+GGG | - | chr8.3:12357689-12357708 | MS.gene60150:intron | 25.0% |
! | AAGTGATGTAATTTATAGTG+TGG | - | chr8.3:12359643-12359662 | MS.gene60150:intron | 25.0% |
! | AGTGAAAAAAATTTCAAGGA+TGG | + | chr8.3:12359514-12359533 | None:intergenic | 25.0% |
! | AGTGAAGATTTAGAAGTTAA+TGG | - | chr8.3:12358846-12358865 | MS.gene60150:intron | 25.0% |
! | ATTGGAAAACTTCTATACAA+AGG | + | chr8.3:12360310-12360329 | None:intergenic | 25.0% |
! | GTAAACATTAAACTCTATTC+AGG | - | chr8.3:12359553-12359572 | MS.gene60150:intron | 25.0% |
! | GTGAAGATTTAGAAGTTAAT+GGG | - | chr8.3:12358847-12358866 | MS.gene60150:intron | 25.0% |
! | TAAAGATAAAAGATGCAACA+TGG | - | chr8.3:12357688-12357707 | MS.gene60150:intron | 25.0% |
! | TAACTTCATTCCAAACAAAT+TGG | + | chr8.3:12360114-12360133 | None:intergenic | 25.0% |
! | TCTATACAAAGGATTAATGA+AGG | + | chr8.3:12360299-12360318 | None:intergenic | 25.0% |
! | TGAAGATTTAGAAGTTAATG+GGG | - | chr8.3:12358848-12358867 | MS.gene60150:intron | 25.0% |
! | TTATGAATCCTTACTAATTG+AGG | - | chr8.3:12359809-12359828 | MS.gene60150:intron | 25.0% |
!! | ACCTTAACAAGTTTTTAACA+AGG | - | chr8.3:12358951-12358970 | MS.gene60150:CDS | 25.0% |
!! | CAATTTTATTGTTCTCTGAT+GGG | - | chr8.3:12360326-12360345 | MS.gene60150:intron | 25.0% |
!!! | ATCAGTTCTTTAATTTTCGT+TGG | - | chr8.3:12358485-12358504 | MS.gene60150:intron | 25.0% |
!!! | CTTGAAATTTTTTTCACTGT+GGG | - | chr8.3:12359516-12359535 | MS.gene60150:intron | 25.0% |
!!! | TAACAAAAGCATGGTTTTAT+TGG | - | chr8.3:12358269-12358288 | MS.gene60150:intron | 25.0% |
!!! | TACACTTTTCTAGTTCATTT+TGG | + | chr8.3:12359905-12359924 | None:intergenic | 25.0% |
!!! | TATTTGCTTTTGTTTTGTCA+GGG | - | chr8.3:12358584-12358603 | MS.gene60150:intron | 25.0% |
!!! | TTATTTGCTTTTGTTTTGTC+AGG | - | chr8.3:12358583-12358602 | MS.gene60150:intron | 25.0% |
!!! | TTGAAATTTTTTTCACTGTG+GGG | - | chr8.3:12359517-12359536 | MS.gene60150:intron | 25.0% |
AAGAGTTATATTGCCTAACT+AGG | - | chr8.3:12357368-12357387 | MS.gene60150:CDS | 30.0% | |
AGCAAGCAATAAGGAAATAT+AGG | + | chr8.3:12359965-12359984 | None:intergenic | 30.0% | |
CCAAAGTTTAAGAACGTATT+TGG | - | chr8.3:12357482-12357501 | MS.gene60150:intron | 30.0% | |
CCAAATACGTTCTTAAACTT+TGG | + | chr8.3:12357485-12357504 | None:intergenic | 30.0% | |
CCACAGTGAAAAAAATTTCA+AGG | + | chr8.3:12359518-12359537 | None:intergenic | 30.0% | |
CCATCAGAGAACAATAAAAT+TGG | + | chr8.3:12360328-12360347 | None:intergenic | 30.0% | |
GACATACTTCACTTATAGTT+CGG | - | chr8.3:12357829-12357848 | MS.gene60150:intron | 30.0% | |
GATAAAATGTCAGACTCAAA+TGG | - | chr8.3:12360411-12360430 | MS.gene60150:intron | 30.0% | |
GATGTGTAAACATTGTTTCA+TGG | - | chr8.3:12359311-12359330 | MS.gene60150:intron | 30.0% | |
GCATGTGAAAGAAAAATCAT+CGG | + | chr8.3:12359391-12359410 | None:intergenic | 30.0% | |
GTTCCACAAATAAAACAAGT+TGG | + | chr8.3:12358400-12358419 | None:intergenic | 30.0% | |
GTTTCTTTCACTTATGATGA+AGG | - | chr8.3:12359679-12359698 | MS.gene60150:intron | 30.0% | |
TAGGGAGAAAATACACTAAA+TGG | + | chr8.3:12358040-12358059 | None:intergenic | 30.0% | |
! | AAACAAATTGGTAGCTTAAG+TGG | + | chr8.3:12360102-12360121 | None:intergenic | 30.0% |
! | ACAACAAATTTGGGATTATG+TGG | - | chr8.3:12358710-12358729 | MS.gene60150:intron | 30.0% |
! | ACTTAAGCTACCAATTTGTT+TGG | - | chr8.3:12360101-12360120 | MS.gene60150:intron | 30.0% |
! | CAACAAATTTGGGATTATGT+GGG | - | chr8.3:12358711-12358730 | MS.gene60150:intron | 30.0% |
! | CCAATTTTATTGTTCTCTGA+TGG | - | chr8.3:12360325-12360344 | MS.gene60150:intron | 30.0% |
! | CTAGGTTGGAAAAAATTGAT+AGG | + | chr8.3:12357733-12357752 | None:intergenic | 30.0% |
! | CTCTGTCACTGATTAATTAA+TGG | - | chr8.3:12359410-12359429 | MS.gene60150:intron | 30.0% |
! | TGTATGATTTGTGGATTTGT+CGG | - | chr8.3:12358440-12358459 | MS.gene60150:intron | 30.0% |
!! | GCCTTGTTAAAAACTTGTTA+AGG | + | chr8.3:12358955-12358974 | None:intergenic | 30.0% |
!! | TGTTTGCTGTGTAATTAACA+CGG | - | chr8.3:12359178-12359197 | MS.gene60150:intron | 30.0% |
!! | TTCAACTTTGCTGTTAAAGA+AGG | + | chr8.3:12358874-12358893 | None:intergenic | 30.0% |
!!! | AAGCCAACTTGTTTTATTTG+TGG | - | chr8.3:12358394-12358413 | MS.gene60150:intron | 30.0% |
!!! | CCTTGAAATTTTTTTCACTG+TGG | - | chr8.3:12359515-12359534 | MS.gene60150:intron | 30.0% |
!!! | CTATCAATTTTTTCCAACCT+AGG | - | chr8.3:12357731-12357750 | MS.gene60150:intron | 30.0% |
AACGAGTTTGAAAGTTTCTC+AGG | - | chr8.3:12357438-12357457 | MS.gene60150:CDS | 35.0% | |
AAGGTAACAACTTCAACACA+TGG | - | chr8.3:12357980-12357999 | MS.gene60150:CDS | 35.0% | |
AATTGCTATGATACTCGCAA+TGG | - | chr8.3:12359711-12359730 | MS.gene60150:intron | 35.0% | |
ACAACCAAATGTGTGACATT+AGG | + | chr8.3:12359337-12359356 | None:intergenic | 35.0% | |
ACCTTTATACCATCCACTTT+GGG | + | chr8.3:12357614-12357633 | None:intergenic | 35.0% | |
ACTTCTTGCCTCAATTAGTA+AGG | + | chr8.3:12359820-12359839 | None:intergenic | 35.0% | |
AGAAAGAAATGTTGTTGCTG+AGG | - | chr8.3:12359929-12359948 | MS.gene60150:intron | 35.0% | |
AGACTCAAATGGAATAAAGG+AGG | - | chr8.3:12360422-12360441 | MS.gene60150:intron | 35.0% | |
AGATTAAAGAAGCAGAAGAG+AGG | - | chr8.3:12360065-12360084 | MS.gene60150:intron | 35.0% | |
AGCAAACAAAATCATACCAC+AGG | + | chr8.3:12359166-12359185 | None:intergenic | 35.0% | |
AGCAAGAAAAACAGAAAGTC+TGG | - | chr8.3:12360489-12360508 | MS.gene60150:intron | 35.0% | |
ATACTTCACTTATAGTTCGG+AGG | - | chr8.3:12357832-12357851 | MS.gene60150:intron | 35.0% | |
ATGAGCTTAATATCCTAGGT+TGG | + | chr8.3:12357747-12357766 | None:intergenic | 35.0% | |
ATGATTCTTCATGAGAAGCT+TGG | - | chr8.3:12357321-12357340 | MS.gene60150:CDS | 35.0% | |
ATTGAAGTCGATGAATGAGA+GGG | - | chr8.3:12360241-12360260 | MS.gene60150:intron | 35.0% | |
ATTGCTATGATACTCGCAAT+GGG | - | chr8.3:12359712-12359731 | MS.gene60150:intron | 35.0% | |
CAGAGTTAAAGCAAGCAATA+AGG | + | chr8.3:12359974-12359993 | None:intergenic | 35.0% | |
CATCCTGTTGTTGACATAAT+CGG | + | chr8.3:12358372-12358391 | None:intergenic | 35.0% | |
CCAATTGAGATGTAAGAAGA+CGG | + | chr8.3:12359463-12359482 | None:intergenic | 35.0% | |
CCAGAATGCATTGAATTTCT+GGG | - | chr8.3:12357879-12357898 | MS.gene60150:CDS | 35.0% | |
CTAACTAGGATATTATCGTG+AGG | - | chr8.3:12357382-12357401 | MS.gene60150:CDS | 35.0% | |
CTAGTTTCTTGAATGTCAAC+TGG | - | chr8.3:12359620-12359639 | MS.gene60150:intron | 35.0% | |
CTCACGATAATATCCTAGTT+AGG | + | chr8.3:12357384-12357403 | None:intergenic | 35.0% | |
CTTTAACAGCAAAGTTGAAG+CGG | - | chr8.3:12358875-12358894 | MS.gene60150:intron | 35.0% | |
GACTCAAATGGAATAAAGGA+GGG | - | chr8.3:12360423-12360442 | MS.gene60150:intron | 35.0% | |
GGAACATTAGATGATTGTCT+GGG | - | chr8.3:12358415-12358434 | MS.gene60150:intron | 35.0% | |
GTCAGACTCAAATGGAATAA+AGG | - | chr8.3:12360419-12360438 | MS.gene60150:intron | 35.0% | |
TACCTTTATACCATCCACTT+TGG | + | chr8.3:12357615-12357634 | None:intergenic | 35.0% | |
TCACTTATGATGAAGGCTTT+GGG | - | chr8.3:12359686-12359705 | MS.gene60150:intron | 35.0% | |
TGGAACATTAGATGATTGTC+TGG | - | chr8.3:12358414-12358433 | MS.gene60150:intron | 35.0% | |
TGGAATGTGCAATGATAAGT+TGG | + | chr8.3:12358006-12358025 | None:intergenic | 35.0% | |
TGTCATGTAGACATAGAGAT+AGG | - | chr8.3:12359233-12359252 | MS.gene60150:intron | 35.0% | |
TTCACTTATGATGAAGGCTT+TGG | - | chr8.3:12359685-12359704 | MS.gene60150:intron | 35.0% | |
! | AATGCATTGAATTTCTGGGA+AGG | - | chr8.3:12357883-12357902 | MS.gene60150:CDS | 35.0% |
! | CAGGATCAATCTAGAATTGA+CGG | - | chr8.3:12358759-12358778 | MS.gene60150:intron | 35.0% |
! | TAATGGACATGAACAGATTG+TGG | - | chr8.3:12359427-12359446 | MS.gene60150:intron | 35.0% |
! | TTCACTGTATGTCTCTAGAA+GGG | - | chr8.3:12358802-12358821 | MS.gene60150:intron | 35.0% |
! | TTCTAAAAAACAAGGAAGGG+CGG | - | chr8.3:12358112-12358131 | MS.gene60150:intron | 35.0% |
! | TTTGCTGTGTAATTAACACG+GGG | - | chr8.3:12359180-12359199 | MS.gene60150:intron | 35.0% |
!! | AAAAAGCTTCTCTGAAATCG+TGG | - | chr8.3:12358912-12358931 | MS.gene60150:intron | 35.0% |
!! | GTTTGCTGTGTAATTAACAC+GGG | - | chr8.3:12359179-12359198 | MS.gene60150:intron | 35.0% |
!!! | ACACTTTTTAAGTCCCAAAG+TGG | - | chr8.3:12357598-12357617 | MS.gene60150:intron | 35.0% |
!!! | TTTTTAAGTCCCAAAGTGGA+TGG | - | chr8.3:12357602-12357621 | MS.gene60150:intron | 35.0% |
AAAACAGAAAGTCTGGTCGA+AGG | - | chr8.3:12360496-12360515 | MS.gene60150:intron | 40.0% | |
AAGAAGCAGAAGAGAGGTAA+TGG | - | chr8.3:12360071-12360090 | MS.gene60150:intron | 40.0% | |
AAGGACATGCTATTCAGCAT+TGG | - | chr8.3:12358649-12358668 | MS.gene60150:intron | 40.0% | |
AAGTTGTTACCTTGACCATG+AGG | + | chr8.3:12357973-12357992 | None:intergenic | 40.0% | |
ATACCTGTTCCTCCAAATCA+AGG | + | chr8.3:12360268-12360287 | None:intergenic | 40.0% | |
ATGAGCTTCCGATTAACCTA+AGG | + | chr8.3:12360019-12360038 | None:intergenic | 40.0% | |
ATGGCCTAATGTCACACATT+TGG | - | chr8.3:12359330-12359349 | MS.gene60150:intron | 40.0% | |
ATTGATCCTGATTCAGTCGA+TGG | + | chr8.3:12358749-12358768 | None:intergenic | 40.0% | |
ATTTGTGGATTTGTCGGATG+TGG | - | chr8.3:12358446-12358465 | MS.gene60150:intron | 40.0% | |
CAGGGAAGACTTTAATGCTA+TGG | - | chr8.3:12358602-12358621 | MS.gene60150:intron | 40.0% | |
CATTCTGCCCTTAGGTTAAT+CGG | - | chr8.3:12360008-12360027 | MS.gene60150:intron | 40.0% | |
CATTGAAGTCGATGAATGAG+AGG | - | chr8.3:12360240-12360259 | MS.gene60150:intron | 40.0% | |
CCCAGAAATTCAATGCATTC+TGG | + | chr8.3:12357882-12357901 | None:intergenic | 40.0% | |
CCGTCTTCTTACATCTCAAT+TGG | - | chr8.3:12359460-12359479 | MS.gene60150:intron | 40.0% | |
CTATGTCTACATGACAGTAC+AGG | + | chr8.3:12359229-12359248 | None:intergenic | 40.0% | |
GCCAGAATGCATTGAATTTC+TGG | - | chr8.3:12357878-12357897 | MS.gene60150:CDS | 40.0% | |
GCTCATGAGCTTAATATCCT+AGG | + | chr8.3:12357751-12357770 | None:intergenic | 40.0% | |
GTCTGGGTTTGTATGATTTG+TGG | - | chr8.3:12358431-12358450 | MS.gene60150:intron | 40.0% | |
GTTCACTGTATGTCTCTAGA+AGG | - | chr8.3:12358801-12358820 | MS.gene60150:intron | 40.0% | |
TCCCAAAGTGGATGGTATAA+AGG | - | chr8.3:12357610-12357629 | MS.gene60150:intron | 40.0% | |
TGAGCTTCCGATTAACCTAA+GGG | + | chr8.3:12360018-12360037 | None:intergenic | 40.0% | |
TGTTTACACATCACGTGTGA+CGG | + | chr8.3:12359303-12359322 | None:intergenic | 40.0% | |
! | TCACTGTATGTCTCTAGAAG+GGG | - | chr8.3:12358803-12358822 | MS.gene60150:intron | 40.0% |
! | TCGTGACAAGGTATTCGAAT+TGG | + | chr8.3:12357913-12357932 | None:intergenic | 40.0% |
! | TTATGTCCATCGACTGAATC+AGG | - | chr8.3:12358740-12358759 | MS.gene60150:intron | 40.0% |
! | TTTCAAGTGAAGTCGTGACA+AGG | + | chr8.3:12357925-12357944 | None:intergenic | 40.0% |
!! | TCTCTGAAATCGTGGAGTTA+GGG | - | chr8.3:12358920-12358939 | MS.gene60150:intron | 40.0% |
!! | TTCTCTGAAATCGTGGAGTT+AGG | - | chr8.3:12358919-12358938 | MS.gene60150:intron | 40.0% |
!!! | CTGTTTTTCTTGCTGTTTCC+AGG | + | chr8.3:12360483-12360502 | None:intergenic | 40.0% |
!!! | GGTTTTATTGGTAATGCACG+TGG | - | chr8.3:12358281-12358300 | MS.gene60150:intron | 40.0% |
AAAAGATGCAACATGGGCGA+TGG | - | chr8.3:12357695-12357714 | MS.gene60150:intron | 45.0% | |
AAAGATGCAACATGGGCGAT+GGG | - | chr8.3:12357696-12357715 | MS.gene60150:intron | 45.0% | |
AAATCATACCACAGGTGCAC+AGG | + | chr8.3:12359158-12359177 | None:intergenic | 45.0% | |
ACAAGGAAGGGCGGAAATTA+AGG | - | chr8.3:12358121-12358140 | MS.gene60150:intron | 45.0% | |
ACATGGGCGATGGGAAAAAA+TGG | - | chr8.3:12357705-12357724 | MS.gene60150:intron | 45.0% | |
AGACACTTCATTCTGCCCTT+AGG | - | chr8.3:12360000-12360019 | MS.gene60150:intron | 45.0% | |
AGCGACAAGCTCACTTTAAG+TGG | - | chr8.3:12359050-12359069 | MS.gene60150:CDS | 45.0% | |
CTTCTCCACTGCTTCAGATA+CGG | + | chr8.3:12359856-12359875 | None:intergenic | 45.0% | |
GAATGAGAGGGTCCTTGATT+TGG | - | chr8.3:12360253-12360272 | MS.gene60150:intron | 45.0% | |
GTGCTTCGCTAACAAAAGCA+TGG | - | chr8.3:12358260-12358279 | MS.gene60150:intron | 45.0% | |
TAGAATTGACGGCAAGTCGA+AGG | - | chr8.3:12358770-12358789 | MS.gene60150:intron | 45.0% | |
TGTTACCTTGACCATGAGGA+GGG | + | chr8.3:12357969-12357988 | None:intergenic | 45.0% | |
TTGAAGCGGTATGTTTCTCG+TGG | - | chr8.3:12358889-12358908 | MS.gene60150:intron | 45.0% | |
TTGTTACCTTGACCATGAGG+AGG | + | chr8.3:12357970-12357989 | None:intergenic | 45.0% | |
! | AACACGGGGCTTTATGCATA+AGG | - | chr8.3:12359194-12359213 | MS.gene60150:intron | 45.0% |
! | CTGCCGATTATGTCAACAAC+AGG | - | chr8.3:12358366-12358385 | MS.gene60150:intron | 45.0% |
!! | TTCTTGCTGTTTCCAGGAGA+AGG | + | chr8.3:12360477-12360496 | None:intergenic | 45.0% |
AACAAAAGCCTGTGCACCTG+TGG | - | chr8.3:12359147-12359166 | MS.gene60150:intron | 50.0% | |
ACAGAAAGTCTGGTCGAAGG+CGG | - | chr8.3:12360499-12360518 | MS.gene60150:intron | 50.0% | |
GTGGATTTGTCGGATGTGGA+AGG | - | chr8.3:12358450-12358469 | MS.gene60150:intron | 50.0% | |
GTTACCTTGACCATGAGGAG+GGG | + | chr8.3:12357968-12357987 | None:intergenic | 50.0% | |
TTACCTTGACCATGAGGAGG+GGG | + | chr8.3:12357967-12357986 | None:intergenic | 50.0% | |
! | AAGCTCCGTATCTGAAGCAG+TGG | - | chr8.3:12359848-12359867 | MS.gene60150:intron | 50.0% |
! | CGTATCTGAAGCAGTGGAGA+AGG | - | chr8.3:12359854-12359873 | MS.gene60150:intron | 50.0% |
!! | GGTCCTTGATTTGGAGGAAC+AGG | - | chr8.3:12360262-12360281 | MS.gene60150:intron | 50.0% |
!! | TCAATGCATTCTGGCTCGCT+TGG | + | chr8.3:12357873-12357892 | None:intergenic | 50.0% |
!! | TGAGAGGGTCCTTGATTTGG+AGG | - | chr8.3:12360256-12360275 | MS.gene60150:intron | 50.0% |
GAAGGTTGCTCATGAGCCAC+TGG | + | chr8.3:12360459-12360478 | None:intergenic | 55.0% | |
GCTCATGAGCAACCTTCTCC+TGG | - | chr8.3:12360462-12360481 | MS.gene60150:intron | 55.0% | |
GGAGGGAACAGTCTTACCAG+TGG | - | chr8.3:12360440-12360459 | MS.gene60150:intron | 55.0% | |
GTGGAGAAGGCTGCAACTTC+TGG | - | chr8.3:12359867-12359886 | MS.gene60150:intron | 55.0% | |
GGCTGCAACTTCTGGCATGC+TGG | - | chr8.3:12359875-12359894 | MS.gene60150:intron | 60.0% | |
! | ACCATGAGGAGGGGGTGCAA+AGG | + | chr8.3:12357959-12357978 | None:intergenic | 60.0% |
GCACCCCCTCCTCATGGTCA+AGG | - | chr8.3:12357961-12357980 | MS.gene60150:CDS | 65.0% | |
GCCTTTGCACCCCCTCCTCA+TGG | - | chr8.3:12357955-12357974 | MS.gene60150:CDS | 65.0% | |
! | GAGGAGGGGGTGCAAAGGCA+AGG | + | chr8.3:12357954-12357973 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.3 | gene | 12357300 | 12360527 | 12357300 | ID=MS.gene60150 |
chr8.3 | mRNA | 12357300 | 12360527 | 12357300 | ID=MS.gene60150.t1;Parent=MS.gene60150 |
chr8.3 | exon | 12360517 | 12360527 | 12360517 | ID=MS.gene60150.t1.exon1;Parent=MS.gene60150.t1 |
chr8.3 | CDS | 12360517 | 12360527 | 12360517 | ID=cds.MS.gene60150.t1;Parent=MS.gene60150.t1 |
chr8.3 | exon | 12358931 | 12359120 | 12358931 | ID=MS.gene60150.t1.exon2;Parent=MS.gene60150.t1 |
chr8.3 | CDS | 12358931 | 12359120 | 12358931 | ID=cds.MS.gene60150.t1;Parent=MS.gene60150.t1 |
chr8.3 | exon | 12358331 | 12358384 | 12358331 | ID=MS.gene60150.t1.exon3;Parent=MS.gene60150.t1 |
chr8.3 | CDS | 12358331 | 12358384 | 12358331 | ID=cds.MS.gene60150.t1;Parent=MS.gene60150.t1 |
chr8.3 | exon | 12357877 | 12358020 | 12357877 | ID=MS.gene60150.t1.exon4;Parent=MS.gene60150.t1 |
chr8.3 | CDS | 12357877 | 12358020 | 12357877 | ID=cds.MS.gene60150.t1;Parent=MS.gene60150.t1 |
chr8.3 | exon | 12357741 | 12357805 | 12357741 | ID=MS.gene60150.t1.exon5;Parent=MS.gene60150.t1 |
chr8.3 | CDS | 12357741 | 12357805 | 12357741 | ID=cds.MS.gene60150.t1;Parent=MS.gene60150.t1 |
chr8.3 | exon | 12357544 | 12357598 | 12357544 | ID=MS.gene60150.t1.exon6;Parent=MS.gene60150.t1 |
chr8.3 | CDS | 12357544 | 12357598 | 12357544 | ID=cds.MS.gene60150.t1;Parent=MS.gene60150.t1 |
chr8.3 | exon | 12357300 | 12357458 | 12357300 | ID=MS.gene60150.t1.exon7;Parent=MS.gene60150.t1 |
chr8.3 | CDS | 12357300 | 12357458 | 12357300 | ID=cds.MS.gene60150.t1;Parent=MS.gene60150.t1 |
Gene Sequence |
Protein sequence |