AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene60150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60150.t1 MTR_4g114970 95.111 225 10 1 1 225 256 479 2.51e-155 439
MS.gene60150.t1 MTR_4g114970 93.478 138 8 1 1 138 256 392 1.77e-87 265
MS.gene60150.t1 MTR_2g104600 41.709 199 106 4 3 200 209 398 1.50e-42 148
MS.gene60150.t1 MTR_2g104600 41.709 199 106 4 3 200 225 414 1.79e-42 149
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60150.t1 AT2G42160 59.292 226 88 3 1 225 266 488 1.96e-88 269
MS.gene60150.t1 AT2G42160 58.889 180 72 1 1 180 266 443 6.09e-69 218
MS.gene60150.t1 AT2G42160 60.870 138 52 1 1 138 266 401 4.24e-53 176
MS.gene60150.t1 AT2G26000 40.000 175 102 2 3 177 261 432 5.43e-38 137
MS.gene60150.t1 AT2G26000 40.000 175 102 2 3 177 261 432 5.43e-38 137
MS.gene60150.t1 AT2G26000 33.714 175 95 3 3 177 261 414 1.25e-25 103

Find 43 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTGAAGATTTAGAAGTTAA+TGG 0.246664 8.3:-12358959 MS.gene60150:CDS
GTGGAGAAGGCTGCAACTTC+TGG 0.280137 8.3:-12357938 MS.gene60150:CDS
GAATGAGAGGGTCCTTGATT+TGG 0.301939 8.3:-12357552 MS.gene60150:CDS
CATTCTGCCCTTAGGTTAAT+CGG 0.302536 8.3:-12357797 MS.gene60150:intron
CTTAGAGCATCATGGGTATT+AGG 0.309380 8.3:-12360516 None:intergenic
GTGAAGATTTAGAAGTTAAT+GGG 0.313739 8.3:-12358958 MS.gene60150:CDS
GTCAGACTCAAATGGAATAA+AGG 0.364370 8.3:-12357386 MS.gene60150:CDS
TTATGTCCATCGACTGAATC+AGG 0.387311 8.3:-12359065 MS.gene60150:CDS
ACAACAAATTTGGGATTATG+TGG 0.392975 8.3:-12359095 MS.gene60150:CDS
CCGTCTTCTTACATCTCAAT+TGG 0.403056 8.3:-12358345 MS.gene60150:CDS
ACTTCTTGCCTCAATTAGTA+AGG 0.414456 8.3:+12357988 None:intergenic
GGTCCTTGATTTGGAGGAAC+AGG 0.415267 8.3:-12357543 MS.gene60150:intron
TTCAACTTTGCTGTTAAAGA+AGG 0.416559 8.3:+12358934 None:intergenic
TTCTTGCTGTTTCCAGGAGA+AGG 0.425015 8.3:+12357331 None:intergenic
GCTCATGAGCAACCTTCTCC+TGG 0.443145 8.3:-12357343 MS.gene60150:CDS
GTTCACTGTATGTCTCTAGA+AGG 0.443877 8.3:-12359004 MS.gene60150:CDS
GGCTGCAACTTCTGGCATGC+TGG 0.450669 8.3:-12357930 MS.gene60150:CDS
GATAAAATGTCAGACTCAAA+TGG 0.459339 8.3:-12357394 MS.gene60150:CDS
TTATGAATCCTTACTAATTG+AGG 0.471285 8.3:-12357996 MS.gene60150:CDS
TGAGAGGGTCCTTGATTTGG+AGG 0.485934 8.3:-12357549 MS.gene60150:CDS
CTTCTCCACTGCTTCAGATA+CGG 0.513939 8.3:+12357952 None:intergenic
CAGGATCAATCTAGAATTGA+CGG 0.519347 8.3:-12359046 MS.gene60150:CDS
TTCACTGTATGTCTCTAGAA+GGG 0.522047 8.3:-12359003 MS.gene60150:CDS
ATTGATCCTGATTCAGTCGA+TGG 0.544517 8.3:+12359059 None:intergenic
ATACCTGTTCCTCCAAATCA+AGG 0.546149 8.3:+12357540 None:intergenic
CTTTAACAGCAAAGTTGAAG+CGG 0.546937 8.3:-12358930 MS.gene60150:intron
CGTATCTGAAGCAGTGGAGA+AGG 0.559498 8.3:-12357951 MS.gene60150:CDS
AGATTAAAGAAGCAGAAGAG+AGG 0.561135 8.3:-12357740 MS.gene60150:intron
CAACAAATTTGGGATTATGT+GGG 0.563048 8.3:-12359094 MS.gene60150:CDS
GAAGGTTGCTCATGAGCCAC+TGG 0.563743 8.3:+12357349 None:intergenic
CATTGAAGTCGATGAATGAG+AGG 0.577929 8.3:-12357565 MS.gene60150:CDS
TAGAATTGACGGCAAGTCGA+AGG 0.578499 8.3:-12359035 MS.gene60150:CDS
AGAAAGAAATGTTGTTGCTG+AGG 0.588529 8.3:-12357876 MS.gene60150:intron
AGACTCAAATGGAATAAAGG+AGG 0.592588 8.3:-12357383 MS.gene60150:CDS
AAGCTCCGTATCTGAAGCAG+TGG 0.608444 8.3:-12357957 MS.gene60150:CDS
GACTCAAATGGAATAAAGGA+GGG 0.622185 8.3:-12357382 MS.gene60150:CDS
TGAAGATTTAGAAGTTAATG+GGG 0.626069 8.3:-12358957 MS.gene60150:CDS
TCACTGTATGTCTCTAGAAG+GGG 0.634476 8.3:-12359002 MS.gene60150:CDS
CCAATTGAGATGTAAGAAGA+CGG 0.636618 8.3:+12358345 None:intergenic
AAAACAGAAAGTCTGGTCGA+AGG 0.644959 8.3:-12357309 MS.gene60150:CDS
ACAGAAAGTCTGGTCGAAGG+CGG 0.651997 8.3:-12357306 MS.gene60150:CDS
ATTGAAGTCGATGAATGAGA+GGG 0.674240 8.3:-12357564 MS.gene60150:CDS
GGAGGGAACAGTCTTACCAG+TGG 0.721862 8.3:-12357365 MS.gene60150:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTATGAAATATTATCT+TGG - chr8.3:12357523-12357542 MS.gene60150:intron 10.0%
!! ATATAAAATGACAATAAAAT+GGG + chr8.3:12358560-12358579 None:intergenic 10.0%
!! TAATTATGAAATATTATCTT+GGG - chr8.3:12357524-12357543 MS.gene60150:intron 10.0%
!! TATATAAAATGACAATAAAA+TGG + chr8.3:12358561-12358580 None:intergenic 10.0%
!!! ATTTTATTGTCATTTTATAT+AGG - chr8.3:12358560-12358579 MS.gene60150:intron 10.0%
!!! TTTTTATTTTCTAAAAAACA+AGG - chr8.3:12358104-12358123 MS.gene60150:intron 10.0%
!! CATATAGTTATTCTATAAAT+GGG - chr8.3:12359258-12359277 MS.gene60150:intron 15.0%
!! CATTTATAGAATAACTATAT+GGG + chr8.3:12359259-12359278 None:intergenic 15.0%
!! CCAACTTAAATTAATAATTA+GGG + chr8.3:12358058-12358077 None:intergenic 15.0%
!! TCATAATACTAAAACAAAAA+TGG + chr8.3:12359795-12359814 None:intergenic 15.0%
!! TTTAAATATGTGATCATTTA+GGG - chr8.3:12360208-12360227 MS.gene60150:intron 15.0%
!! TTTGTTTAACATATTAAGTA+GGG + chr8.3:12358532-12358551 None:intergenic 15.0%
!!! AGTAAAGTTGTTTTTTTTTT+TGG - chr8.3:12360156-12360175 MS.gene60150:intron 15.0%
!!! ATTATAATGTTAACTTGTTA+AGG + chr8.3:12358981-12359000 None:intergenic 15.0%
!!! CCTAATTATTAATTTAAGTT+GGG - chr8.3:12358056-12358075 MS.gene60150:intron 15.0%
!!! TTTTAATCTAGATATAAAGA+AGG - chr8.3:12358630-12358649 MS.gene60150:intron 15.0%
!!! TTTTGTTTAACATATTAAGT+AGG + chr8.3:12358533-12358552 None:intergenic 15.0%
!! ACTTATGATGTTTATATTGT+AGG - chr8.3:12358342-12358361 MS.gene60150:CDS 20.0%
!! ATCTTCTCCAAAATTTATTT+AGG - chr8.3:12357807-12357826 MS.gene60150:intron 20.0%
!! CCATATAGTTATTCTATAAA+TGG - chr8.3:12359257-12359276 MS.gene60150:intron 20.0%
!! CCATTTATAGAATAACTATA+TGG + chr8.3:12359260-12359279 None:intergenic 20.0%
!! CCCAACTTAAATTAATAATT+AGG + chr8.3:12358059-12358078 None:intergenic 20.0%
!! CCCTAATTATTAATTTAAGT+TGG - chr8.3:12358055-12358074 MS.gene60150:intron 20.0%
!! GTTTAAATATGTGATCATTT+AGG - chr8.3:12360207-12360226 MS.gene60150:intron 20.0%
!! TCATTAAAAATTCAGAAATG+TGG - chr8.3:12360035-12360054 MS.gene60150:intron 20.0%
!! TGGAAATATTATTGTATTGA+TGG - chr8.3:12358301-12358320 MS.gene60150:intron 20.0%
!! TTAAACATGTAATGAGAATA+TGG + chr8.3:12360193-12360212 None:intergenic 20.0%
!! TTTATCTTTATACAAGAGTT+TGG + chr8.3:12357678-12357697 None:intergenic 20.0%
!!! ACTAAATGGATTTTAATATC+TGG + chr8.3:12358026-12358045 None:intergenic 20.0%
!!! AGTATGTCCTAAATAAATTT+TGG + chr8.3:12357817-12357836 None:intergenic 20.0%
!!! ATTTTAGAACACAACAAATT+TGG - chr8.3:12358700-12358719 MS.gene60150:intron 20.0%
!!! ATTTTATGCTGATACTAATT+TGG - chr8.3:12359110-12359129 MS.gene60150:intron 20.0%
!!! ATTTTCTAAAAAACAAGGAA+GGG - chr8.3:12358109-12358128 MS.gene60150:intron 20.0%
!!! GAGAATATCATAATTTTGTT+TGG - chr8.3:12357554-12357573 MS.gene60150:CDS 20.0%
!!! TATTTTCTAAAAAACAAGGA+AGG - chr8.3:12358108-12358127 MS.gene60150:intron 20.0%
!!! TTTTAGAACACAACAAATTT+GGG - chr8.3:12358701-12358720 MS.gene60150:intron 20.0%
!!! TTTTATGCTGATACTAATTT+GGG - chr8.3:12359111-12359130 MS.gene60150:intron 20.0%
! AAAGATAAAAGATGCAACAT+GGG - chr8.3:12357689-12357708 MS.gene60150:intron 25.0%
! AAGTGATGTAATTTATAGTG+TGG - chr8.3:12359643-12359662 MS.gene60150:intron 25.0%
! AGTGAAAAAAATTTCAAGGA+TGG + chr8.3:12359514-12359533 None:intergenic 25.0%
! AGTGAAGATTTAGAAGTTAA+TGG - chr8.3:12358846-12358865 MS.gene60150:intron 25.0%
! ATTGGAAAACTTCTATACAA+AGG + chr8.3:12360310-12360329 None:intergenic 25.0%
! GTAAACATTAAACTCTATTC+AGG - chr8.3:12359553-12359572 MS.gene60150:intron 25.0%
! GTGAAGATTTAGAAGTTAAT+GGG - chr8.3:12358847-12358866 MS.gene60150:intron 25.0%
! TAAAGATAAAAGATGCAACA+TGG - chr8.3:12357688-12357707 MS.gene60150:intron 25.0%
! TAACTTCATTCCAAACAAAT+TGG + chr8.3:12360114-12360133 None:intergenic 25.0%
! TCTATACAAAGGATTAATGA+AGG + chr8.3:12360299-12360318 None:intergenic 25.0%
! TGAAGATTTAGAAGTTAATG+GGG - chr8.3:12358848-12358867 MS.gene60150:intron 25.0%
! TTATGAATCCTTACTAATTG+AGG - chr8.3:12359809-12359828 MS.gene60150:intron 25.0%
!! ACCTTAACAAGTTTTTAACA+AGG - chr8.3:12358951-12358970 MS.gene60150:CDS 25.0%
!! CAATTTTATTGTTCTCTGAT+GGG - chr8.3:12360326-12360345 MS.gene60150:intron 25.0%
!!! ATCAGTTCTTTAATTTTCGT+TGG - chr8.3:12358485-12358504 MS.gene60150:intron 25.0%
!!! CTTGAAATTTTTTTCACTGT+GGG - chr8.3:12359516-12359535 MS.gene60150:intron 25.0%
!!! TAACAAAAGCATGGTTTTAT+TGG - chr8.3:12358269-12358288 MS.gene60150:intron 25.0%
!!! TACACTTTTCTAGTTCATTT+TGG + chr8.3:12359905-12359924 None:intergenic 25.0%
!!! TATTTGCTTTTGTTTTGTCA+GGG - chr8.3:12358584-12358603 MS.gene60150:intron 25.0%
!!! TTATTTGCTTTTGTTTTGTC+AGG - chr8.3:12358583-12358602 MS.gene60150:intron 25.0%
!!! TTGAAATTTTTTTCACTGTG+GGG - chr8.3:12359517-12359536 MS.gene60150:intron 25.0%
AAGAGTTATATTGCCTAACT+AGG - chr8.3:12357368-12357387 MS.gene60150:CDS 30.0%
AGCAAGCAATAAGGAAATAT+AGG + chr8.3:12359965-12359984 None:intergenic 30.0%
CCAAAGTTTAAGAACGTATT+TGG - chr8.3:12357482-12357501 MS.gene60150:intron 30.0%
CCAAATACGTTCTTAAACTT+TGG + chr8.3:12357485-12357504 None:intergenic 30.0%
CCACAGTGAAAAAAATTTCA+AGG + chr8.3:12359518-12359537 None:intergenic 30.0%
CCATCAGAGAACAATAAAAT+TGG + chr8.3:12360328-12360347 None:intergenic 30.0%
GACATACTTCACTTATAGTT+CGG - chr8.3:12357829-12357848 MS.gene60150:intron 30.0%
GATAAAATGTCAGACTCAAA+TGG - chr8.3:12360411-12360430 MS.gene60150:intron 30.0%
GATGTGTAAACATTGTTTCA+TGG - chr8.3:12359311-12359330 MS.gene60150:intron 30.0%
GCATGTGAAAGAAAAATCAT+CGG + chr8.3:12359391-12359410 None:intergenic 30.0%
GTTCCACAAATAAAACAAGT+TGG + chr8.3:12358400-12358419 None:intergenic 30.0%
GTTTCTTTCACTTATGATGA+AGG - chr8.3:12359679-12359698 MS.gene60150:intron 30.0%
TAGGGAGAAAATACACTAAA+TGG + chr8.3:12358040-12358059 None:intergenic 30.0%
! AAACAAATTGGTAGCTTAAG+TGG + chr8.3:12360102-12360121 None:intergenic 30.0%
! ACAACAAATTTGGGATTATG+TGG - chr8.3:12358710-12358729 MS.gene60150:intron 30.0%
! ACTTAAGCTACCAATTTGTT+TGG - chr8.3:12360101-12360120 MS.gene60150:intron 30.0%
! CAACAAATTTGGGATTATGT+GGG - chr8.3:12358711-12358730 MS.gene60150:intron 30.0%
! CCAATTTTATTGTTCTCTGA+TGG - chr8.3:12360325-12360344 MS.gene60150:intron 30.0%
! CTAGGTTGGAAAAAATTGAT+AGG + chr8.3:12357733-12357752 None:intergenic 30.0%
! CTCTGTCACTGATTAATTAA+TGG - chr8.3:12359410-12359429 MS.gene60150:intron 30.0%
! TGTATGATTTGTGGATTTGT+CGG - chr8.3:12358440-12358459 MS.gene60150:intron 30.0%
!! GCCTTGTTAAAAACTTGTTA+AGG + chr8.3:12358955-12358974 None:intergenic 30.0%
!! TGTTTGCTGTGTAATTAACA+CGG - chr8.3:12359178-12359197 MS.gene60150:intron 30.0%
!! TTCAACTTTGCTGTTAAAGA+AGG + chr8.3:12358874-12358893 None:intergenic 30.0%
!!! AAGCCAACTTGTTTTATTTG+TGG - chr8.3:12358394-12358413 MS.gene60150:intron 30.0%
!!! CCTTGAAATTTTTTTCACTG+TGG - chr8.3:12359515-12359534 MS.gene60150:intron 30.0%
!!! CTATCAATTTTTTCCAACCT+AGG - chr8.3:12357731-12357750 MS.gene60150:intron 30.0%
AACGAGTTTGAAAGTTTCTC+AGG - chr8.3:12357438-12357457 MS.gene60150:CDS 35.0%
AAGGTAACAACTTCAACACA+TGG - chr8.3:12357980-12357999 MS.gene60150:CDS 35.0%
AATTGCTATGATACTCGCAA+TGG - chr8.3:12359711-12359730 MS.gene60150:intron 35.0%
ACAACCAAATGTGTGACATT+AGG + chr8.3:12359337-12359356 None:intergenic 35.0%
ACCTTTATACCATCCACTTT+GGG + chr8.3:12357614-12357633 None:intergenic 35.0%
ACTTCTTGCCTCAATTAGTA+AGG + chr8.3:12359820-12359839 None:intergenic 35.0%
AGAAAGAAATGTTGTTGCTG+AGG - chr8.3:12359929-12359948 MS.gene60150:intron 35.0%
AGACTCAAATGGAATAAAGG+AGG - chr8.3:12360422-12360441 MS.gene60150:intron 35.0%
AGATTAAAGAAGCAGAAGAG+AGG - chr8.3:12360065-12360084 MS.gene60150:intron 35.0%
AGCAAACAAAATCATACCAC+AGG + chr8.3:12359166-12359185 None:intergenic 35.0%
AGCAAGAAAAACAGAAAGTC+TGG - chr8.3:12360489-12360508 MS.gene60150:intron 35.0%
ATACTTCACTTATAGTTCGG+AGG - chr8.3:12357832-12357851 MS.gene60150:intron 35.0%
ATGAGCTTAATATCCTAGGT+TGG + chr8.3:12357747-12357766 None:intergenic 35.0%
ATGATTCTTCATGAGAAGCT+TGG - chr8.3:12357321-12357340 MS.gene60150:CDS 35.0%
ATTGAAGTCGATGAATGAGA+GGG - chr8.3:12360241-12360260 MS.gene60150:intron 35.0%
ATTGCTATGATACTCGCAAT+GGG - chr8.3:12359712-12359731 MS.gene60150:intron 35.0%
CAGAGTTAAAGCAAGCAATA+AGG + chr8.3:12359974-12359993 None:intergenic 35.0%
CATCCTGTTGTTGACATAAT+CGG + chr8.3:12358372-12358391 None:intergenic 35.0%
CCAATTGAGATGTAAGAAGA+CGG + chr8.3:12359463-12359482 None:intergenic 35.0%
CCAGAATGCATTGAATTTCT+GGG - chr8.3:12357879-12357898 MS.gene60150:CDS 35.0%
CTAACTAGGATATTATCGTG+AGG - chr8.3:12357382-12357401 MS.gene60150:CDS 35.0%
CTAGTTTCTTGAATGTCAAC+TGG - chr8.3:12359620-12359639 MS.gene60150:intron 35.0%
CTCACGATAATATCCTAGTT+AGG + chr8.3:12357384-12357403 None:intergenic 35.0%
CTTTAACAGCAAAGTTGAAG+CGG - chr8.3:12358875-12358894 MS.gene60150:intron 35.0%
GACTCAAATGGAATAAAGGA+GGG - chr8.3:12360423-12360442 MS.gene60150:intron 35.0%
GGAACATTAGATGATTGTCT+GGG - chr8.3:12358415-12358434 MS.gene60150:intron 35.0%
GTCAGACTCAAATGGAATAA+AGG - chr8.3:12360419-12360438 MS.gene60150:intron 35.0%
TACCTTTATACCATCCACTT+TGG + chr8.3:12357615-12357634 None:intergenic 35.0%
TCACTTATGATGAAGGCTTT+GGG - chr8.3:12359686-12359705 MS.gene60150:intron 35.0%
TGGAACATTAGATGATTGTC+TGG - chr8.3:12358414-12358433 MS.gene60150:intron 35.0%
TGGAATGTGCAATGATAAGT+TGG + chr8.3:12358006-12358025 None:intergenic 35.0%
TGTCATGTAGACATAGAGAT+AGG - chr8.3:12359233-12359252 MS.gene60150:intron 35.0%
TTCACTTATGATGAAGGCTT+TGG - chr8.3:12359685-12359704 MS.gene60150:intron 35.0%
! AATGCATTGAATTTCTGGGA+AGG - chr8.3:12357883-12357902 MS.gene60150:CDS 35.0%
! CAGGATCAATCTAGAATTGA+CGG - chr8.3:12358759-12358778 MS.gene60150:intron 35.0%
! TAATGGACATGAACAGATTG+TGG - chr8.3:12359427-12359446 MS.gene60150:intron 35.0%
! TTCACTGTATGTCTCTAGAA+GGG - chr8.3:12358802-12358821 MS.gene60150:intron 35.0%
! TTCTAAAAAACAAGGAAGGG+CGG - chr8.3:12358112-12358131 MS.gene60150:intron 35.0%
! TTTGCTGTGTAATTAACACG+GGG - chr8.3:12359180-12359199 MS.gene60150:intron 35.0%
!! AAAAAGCTTCTCTGAAATCG+TGG - chr8.3:12358912-12358931 MS.gene60150:intron 35.0%
!! GTTTGCTGTGTAATTAACAC+GGG - chr8.3:12359179-12359198 MS.gene60150:intron 35.0%
!!! ACACTTTTTAAGTCCCAAAG+TGG - chr8.3:12357598-12357617 MS.gene60150:intron 35.0%
!!! TTTTTAAGTCCCAAAGTGGA+TGG - chr8.3:12357602-12357621 MS.gene60150:intron 35.0%
AAAACAGAAAGTCTGGTCGA+AGG - chr8.3:12360496-12360515 MS.gene60150:intron 40.0%
AAGAAGCAGAAGAGAGGTAA+TGG - chr8.3:12360071-12360090 MS.gene60150:intron 40.0%
AAGGACATGCTATTCAGCAT+TGG - chr8.3:12358649-12358668 MS.gene60150:intron 40.0%
AAGTTGTTACCTTGACCATG+AGG + chr8.3:12357973-12357992 None:intergenic 40.0%
ATACCTGTTCCTCCAAATCA+AGG + chr8.3:12360268-12360287 None:intergenic 40.0%
ATGAGCTTCCGATTAACCTA+AGG + chr8.3:12360019-12360038 None:intergenic 40.0%
ATGGCCTAATGTCACACATT+TGG - chr8.3:12359330-12359349 MS.gene60150:intron 40.0%
ATTGATCCTGATTCAGTCGA+TGG + chr8.3:12358749-12358768 None:intergenic 40.0%
ATTTGTGGATTTGTCGGATG+TGG - chr8.3:12358446-12358465 MS.gene60150:intron 40.0%
CAGGGAAGACTTTAATGCTA+TGG - chr8.3:12358602-12358621 MS.gene60150:intron 40.0%
CATTCTGCCCTTAGGTTAAT+CGG - chr8.3:12360008-12360027 MS.gene60150:intron 40.0%
CATTGAAGTCGATGAATGAG+AGG - chr8.3:12360240-12360259 MS.gene60150:intron 40.0%
CCCAGAAATTCAATGCATTC+TGG + chr8.3:12357882-12357901 None:intergenic 40.0%
CCGTCTTCTTACATCTCAAT+TGG - chr8.3:12359460-12359479 MS.gene60150:intron 40.0%
CTATGTCTACATGACAGTAC+AGG + chr8.3:12359229-12359248 None:intergenic 40.0%
GCCAGAATGCATTGAATTTC+TGG - chr8.3:12357878-12357897 MS.gene60150:CDS 40.0%
GCTCATGAGCTTAATATCCT+AGG + chr8.3:12357751-12357770 None:intergenic 40.0%
GTCTGGGTTTGTATGATTTG+TGG - chr8.3:12358431-12358450 MS.gene60150:intron 40.0%
GTTCACTGTATGTCTCTAGA+AGG - chr8.3:12358801-12358820 MS.gene60150:intron 40.0%
TCCCAAAGTGGATGGTATAA+AGG - chr8.3:12357610-12357629 MS.gene60150:intron 40.0%
TGAGCTTCCGATTAACCTAA+GGG + chr8.3:12360018-12360037 None:intergenic 40.0%
TGTTTACACATCACGTGTGA+CGG + chr8.3:12359303-12359322 None:intergenic 40.0%
! TCACTGTATGTCTCTAGAAG+GGG - chr8.3:12358803-12358822 MS.gene60150:intron 40.0%
! TCGTGACAAGGTATTCGAAT+TGG + chr8.3:12357913-12357932 None:intergenic 40.0%
! TTATGTCCATCGACTGAATC+AGG - chr8.3:12358740-12358759 MS.gene60150:intron 40.0%
! TTTCAAGTGAAGTCGTGACA+AGG + chr8.3:12357925-12357944 None:intergenic 40.0%
!! TCTCTGAAATCGTGGAGTTA+GGG - chr8.3:12358920-12358939 MS.gene60150:intron 40.0%
!! TTCTCTGAAATCGTGGAGTT+AGG - chr8.3:12358919-12358938 MS.gene60150:intron 40.0%
!!! CTGTTTTTCTTGCTGTTTCC+AGG + chr8.3:12360483-12360502 None:intergenic 40.0%
!!! GGTTTTATTGGTAATGCACG+TGG - chr8.3:12358281-12358300 MS.gene60150:intron 40.0%
AAAAGATGCAACATGGGCGA+TGG - chr8.3:12357695-12357714 MS.gene60150:intron 45.0%
AAAGATGCAACATGGGCGAT+GGG - chr8.3:12357696-12357715 MS.gene60150:intron 45.0%
AAATCATACCACAGGTGCAC+AGG + chr8.3:12359158-12359177 None:intergenic 45.0%
ACAAGGAAGGGCGGAAATTA+AGG - chr8.3:12358121-12358140 MS.gene60150:intron 45.0%
ACATGGGCGATGGGAAAAAA+TGG - chr8.3:12357705-12357724 MS.gene60150:intron 45.0%
AGACACTTCATTCTGCCCTT+AGG - chr8.3:12360000-12360019 MS.gene60150:intron 45.0%
AGCGACAAGCTCACTTTAAG+TGG - chr8.3:12359050-12359069 MS.gene60150:CDS 45.0%
CTTCTCCACTGCTTCAGATA+CGG + chr8.3:12359856-12359875 None:intergenic 45.0%
GAATGAGAGGGTCCTTGATT+TGG - chr8.3:12360253-12360272 MS.gene60150:intron 45.0%
GTGCTTCGCTAACAAAAGCA+TGG - chr8.3:12358260-12358279 MS.gene60150:intron 45.0%
TAGAATTGACGGCAAGTCGA+AGG - chr8.3:12358770-12358789 MS.gene60150:intron 45.0%
TGTTACCTTGACCATGAGGA+GGG + chr8.3:12357969-12357988 None:intergenic 45.0%
TTGAAGCGGTATGTTTCTCG+TGG - chr8.3:12358889-12358908 MS.gene60150:intron 45.0%
TTGTTACCTTGACCATGAGG+AGG + chr8.3:12357970-12357989 None:intergenic 45.0%
! AACACGGGGCTTTATGCATA+AGG - chr8.3:12359194-12359213 MS.gene60150:intron 45.0%
! CTGCCGATTATGTCAACAAC+AGG - chr8.3:12358366-12358385 MS.gene60150:intron 45.0%
!! TTCTTGCTGTTTCCAGGAGA+AGG + chr8.3:12360477-12360496 None:intergenic 45.0%
AACAAAAGCCTGTGCACCTG+TGG - chr8.3:12359147-12359166 MS.gene60150:intron 50.0%
ACAGAAAGTCTGGTCGAAGG+CGG - chr8.3:12360499-12360518 MS.gene60150:intron 50.0%
GTGGATTTGTCGGATGTGGA+AGG - chr8.3:12358450-12358469 MS.gene60150:intron 50.0%
GTTACCTTGACCATGAGGAG+GGG + chr8.3:12357968-12357987 None:intergenic 50.0%
TTACCTTGACCATGAGGAGG+GGG + chr8.3:12357967-12357986 None:intergenic 50.0%
! AAGCTCCGTATCTGAAGCAG+TGG - chr8.3:12359848-12359867 MS.gene60150:intron 50.0%
! CGTATCTGAAGCAGTGGAGA+AGG - chr8.3:12359854-12359873 MS.gene60150:intron 50.0%
!! GGTCCTTGATTTGGAGGAAC+AGG - chr8.3:12360262-12360281 MS.gene60150:intron 50.0%
!! TCAATGCATTCTGGCTCGCT+TGG + chr8.3:12357873-12357892 None:intergenic 50.0%
!! TGAGAGGGTCCTTGATTTGG+AGG - chr8.3:12360256-12360275 MS.gene60150:intron 50.0%
GAAGGTTGCTCATGAGCCAC+TGG + chr8.3:12360459-12360478 None:intergenic 55.0%
GCTCATGAGCAACCTTCTCC+TGG - chr8.3:12360462-12360481 MS.gene60150:intron 55.0%
GGAGGGAACAGTCTTACCAG+TGG - chr8.3:12360440-12360459 MS.gene60150:intron 55.0%
GTGGAGAAGGCTGCAACTTC+TGG - chr8.3:12359867-12359886 MS.gene60150:intron 55.0%
GGCTGCAACTTCTGGCATGC+TGG - chr8.3:12359875-12359894 MS.gene60150:intron 60.0%
! ACCATGAGGAGGGGGTGCAA+AGG + chr8.3:12357959-12357978 None:intergenic 60.0%
GCACCCCCTCCTCATGGTCA+AGG - chr8.3:12357961-12357980 MS.gene60150:CDS 65.0%
GCCTTTGCACCCCCTCCTCA+TGG - chr8.3:12357955-12357974 MS.gene60150:CDS 65.0%
! GAGGAGGGGGTGCAAAGGCA+AGG + chr8.3:12357954-12357973 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 12357300 12360527 12357300 ID=MS.gene60150
chr8.3 mRNA 12357300 12360527 12357300 ID=MS.gene60150.t1;Parent=MS.gene60150
chr8.3 exon 12360517 12360527 12360517 ID=MS.gene60150.t1.exon1;Parent=MS.gene60150.t1
chr8.3 CDS 12360517 12360527 12360517 ID=cds.MS.gene60150.t1;Parent=MS.gene60150.t1
chr8.3 exon 12358931 12359120 12358931 ID=MS.gene60150.t1.exon2;Parent=MS.gene60150.t1
chr8.3 CDS 12358931 12359120 12358931 ID=cds.MS.gene60150.t1;Parent=MS.gene60150.t1
chr8.3 exon 12358331 12358384 12358331 ID=MS.gene60150.t1.exon3;Parent=MS.gene60150.t1
chr8.3 CDS 12358331 12358384 12358331 ID=cds.MS.gene60150.t1;Parent=MS.gene60150.t1
chr8.3 exon 12357877 12358020 12357877 ID=MS.gene60150.t1.exon4;Parent=MS.gene60150.t1
chr8.3 CDS 12357877 12358020 12357877 ID=cds.MS.gene60150.t1;Parent=MS.gene60150.t1
chr8.3 exon 12357741 12357805 12357741 ID=MS.gene60150.t1.exon5;Parent=MS.gene60150.t1
chr8.3 CDS 12357741 12357805 12357741 ID=cds.MS.gene60150.t1;Parent=MS.gene60150.t1
chr8.3 exon 12357544 12357598 12357544 ID=MS.gene60150.t1.exon6;Parent=MS.gene60150.t1
chr8.3 CDS 12357544 12357598 12357544 ID=cds.MS.gene60150.t1;Parent=MS.gene60150.t1
chr8.3 exon 12357300 12357458 12357300 ID=MS.gene60150.t1.exon7;Parent=MS.gene60150.t1
chr8.3 CDS 12357300 12357458 12357300 ID=cds.MS.gene60150.t1;Parent=MS.gene60150.t1
Gene Sequence

>MS.gene60150

ATGGGTATTAGGTGAGTGATGATGATTCTTCATGAGAAGCTTGGTCACTCAACTTGCACAAATTGTTTAAGAGTTATATTGCCTAACTAGGATATTATCGTGAGGTTAATTTGCATTGAACATATATTGATTGATTCAAACGAGTTTGAAAGTTTCTCAGGTTGTCACAAGCTCTTCATTAACCAAAGTTTAAGAACGTATTTGGATTGCATTCTATAACTTCATAATTATGAAATATTATCTTGGGAAATTGAGAGAATATCATAATTTTGTTTGGACATATTATTATCATGTTAATACACTTTTTAAGTCCCAAAGTGGATGGTATAAAGGTATCTGAAGTTCTTTTATAAAAATAATTTGATCTTGCATAAGCCAAACTCTTGTATAAAGATAAAAGATGCAACATGGGCGATGGGAAAAAATGGATCCTATCAATTTTTTCCAACCTAGGATATTAAGCTCATGAGCTTAGTCTTACTTCTTGTCAAGAAACGAAAAAAGAATATCTTCTCCAAAATTTATTTAGGACATACTTCACTTATAGTTCGGAGGTAAGTATTGTTAAAACCAAGCGAGCCAGAATGCATTGAATTTCTGGGAAGGTGTTCCAATTCGAATACCTTGTCACGACTTCACTTGAAACACTAACCTTGCCTTTGCACCCCCTCCTCATGGTCAAGGTAACAACTTCAACACATGGCCAACTTATCATTGCACATTCCAGATATTAAAATCCATTTAGTGTATTTTCTCCCTAATTATTAATTTAAGTTGGGATGCAAATGCAAGCATCATTGATCATTTTTATTTTCTAAAAAACAAGGAAGGGCGGAAATTAAGGTGTCATATCTGCAGTATGATTACATAGAGTGATTTTGTTTGAATTGTAATGCGAACATTTTTTCAGTATTTAATTAGTAGTTATATTTTGTAATGTTGCATTGACTAAAATTTCATGTGCTTCGCTAACAAAAGCATGGTTTTATTGGTAATGCACGTGGAAATATTATTGTATTGATGGAGAATTCTATTGAAAAGAACTTATGATGTTTATATTGTAGGTCTGCCGATTATGTCAACAACAGGATGAGAAGCCAACTTGTTTTATTTGTGGAACATTAGATGATTGTCTGGGTTTGTATGATTTGTGGATTTGTCGGATGTGGAAGGTAATATATTAGTATCAGTTCTTTAATTTTCGTTGGTAATAACTTGTGTACAAAAGTCCCTACTTAATATGTTAAACAAAACAAACCCATTTTATTGTCATTTTATATAGGTTATTTGCTTTTGTTTTGTCAGGGAAGACTTTAATGCTATGGTTCTTTTTTAATCTAGATATAAAGAAGGACATGCTATTCAGCATTGGAAAGATACTCAGCATTGCTATTCTCTTGATTTTAGAACACAACAAATTTGGGATTATGTGGGTGACAATTATGTCCATCGACTGAATCAGGATCAATCTAGAATTGACGGCAAGTCGAAGGAGATGCATGTTCACTGTATGTCTCTAGAAGGGGATTGTGACACATGTGAATGTAGTGAAGATTTAGAAGTTAATGGGGCCTTCTTTAACAGCAAAGTTGAAGCGGTATGTTTCTCGTGGAAAAAGCTTCTCTGAAATCGTGGAGTTAGGGTGTAGCTAACCTTAACAAGTTTTTAACAAGGCTAACCTTAACAAGTTAACATTATAATGCACTTTAATTTTAAATCAACTCTAGATACATATTTACTTGCTCATTTTAGCGACAAGCTCACTTTAAGTGGAGCTTATCTGTTTCGCATGTATTGATCTCTTAATTTAATTTTATGCTGATACTAATTTGGGCAGATTAGTCTGAAACAAAAGCCTGTGCACCTGTGGTATGATTTTGTTTGCTGTGTAATTAACACGGGGCTTTATGCATAAGGCACTTAATACCTGTACTGTCATGTAGACATAGAGATAGGCCCATATAGTTATTCTATAAATGGGATGTGAAATGTCAAATAAGCCGTCACACGTGATGTGTAAACATTGTTTCATGGCCTAATGTCACACATTTGGTTGTTTATTGTATGATACTCGATGTATCTTGTGCTCCGATGATTTTTCTTTCACATGCTCTGTCACTGATTAATTAATGGACATGAACAGATTGTGGATGAATACAACCGTCTTCTTACATCTCAATTGGAGACTCAAAGACAAGTGAGTTAACTCTACCATCCTTGAAATTTTTTTCACTGTGGGGTTAAAATAATTCTGTAAACATTAAACTCTATTCAGGTTATAGAACTATAGATTGTTCATGTCATACTCTTCTCTAATATACTAGTTTCTTGAATGTCAACTGGAAGTGATGTAATTTATAGTGTGGTTGTCAGTATAAAGTTTCTTTCACTTATGATGAAGGCTTTGGGACAATTGCTATGATACTCGCAATGGGTTGATCTTTTGATGCAGTAATATGATGACGTGTTTGTGAAATCTAATTATCTTCATACCATTTTTGTTTTAGTATTATGAATCCTTACTAATTGAGGCAAGAAGTAAAGAAGAAAGCTCCGTATCTGAAGCAGTGGAGAAGGCTGCAACTTCTGGCATGCTGGATATCCAAAATGAACTAGAAAAGTGTACAGAAGAAAGAAATGTTGTTGCTGAGGTAACTTTTCTCCTATATTTCCTTATTGCTTGCTTTAACTCTGCTATTTAGACACTTCATTCTGCCCTTAGGTTAATCGGAAGCTCATTAAAAATTCAGAAATGTGGCGAAAGAAGATTAAAGAAGCAGAAGAGAGGTAATGGTATTACCACTTAAGCTACCAATTTGTTTGGAATGAAGTTATGTGTAACTTATTAAGAATGTTAGTAAAGTTGTTTTTTTTTTTGGTTATTGCTGCACCATATTCTCATTACATGTTTAAATATGTGATCATTTAGGGAAGCTACATCATTGAAGTCGATGAATGAGAGGGTCCTTGATTTGGAGGAACAGGTATGACAACTTCCTTCATTAATCCTTTGTATAGAAGTTTTCCAATTTTATTGTTCTCTGATGGGTTAAGTGACTATACAAACAGATAAGAGATATCACGATTTTTCTACAAGCACAAAAAACAATTGATAAAATGTCAGACTCAAATGGAATAAAGGAGGGAACAGTCTTACCAGTGGCTCATGAGCAACCTTCTCCTGGAAACAGCAAGAAAAACAGAAAGTCTGGTCGAAGGCGGCGTTAG

Protein sequence

>MS.gene60150.t1

MGIRTQQIWDYVGDNYVHRLNQDQSRIDGKSKEMHVHCMSLEGDCDTCECSEDLEVNGAFFNSKVEAIVDEYNRLLTSQLETQRQYYESLLIEARSKEESSVSEAVEKAATSGMLDIQNELEKCTEERNVVAEVNRKLIKNSEMWRKKIKEAEEREATSLKSMNERVLDLEEQIRDITIFLQAQKTIDKMSDSNGIKEGTVLPVAHEQPSPGNSKKNRKSGRRRR