Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75412.t1 | XP_004501186.1 | 93.2 | 177 | 2 | 1 | 1 | 167 | 39 | 215 | 4.20E-64 | 254.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75412.t1 | Q86WR0 | 74.0 | 104 | 27 | 0 | 1 | 104 | 40 | 143 | 1.5e-38 | 160.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75412.t1 | A0A1S2Y8N5 | 93.2 | 177 | 2 | 1 | 1 | 167 | 39 | 215 | 3.0e-64 | 254.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene75412 | 0.833772 | 4.40E-56 | -1.69E-46 |
| MS.gene04915 | MS.gene75412 | 0.804553 | 2.04E-49 | -1.69E-46 |
| MS.gene049166 | MS.gene75412 | 0.830764 | 2.44E-55 | -1.69E-46 |
| MS.gene04917 | MS.gene75412 | 0.807597 | 4.68E-50 | -1.69E-46 |
| MS.gene049208 | MS.gene75412 | 0.81593 | 7.18E-52 | -1.69E-46 |
| MS.gene049368 | MS.gene75412 | 0.838578 | 2.65E-57 | -1.69E-46 |
| MS.gene049786 | MS.gene75412 | 0.837879 | 4.01E-57 | -1.69E-46 |
| MS.gene04984 | MS.gene75412 | 0.800297 | 1.54E-48 | -1.69E-46 |
| MS.gene049983 | MS.gene75412 | 0.808403 | 3.15E-50 | -1.69E-46 |
| MS.gene050114 | MS.gene75412 | 0.858026 | 1.09E-62 | -1.69E-46 |
| MS.gene050317 | MS.gene75412 | 0.828369 | 9.34E-55 | -1.69E-46 |
| MS.gene050359 | MS.gene75412 | 0.804219 | 2.40E-49 | -1.69E-46 |
| MS.gene050439 | MS.gene75412 | 0.844854 | 5.84E-59 | -1.69E-46 |
| MS.gene050654 | MS.gene75412 | 0.840272 | 9.61E-58 | -1.69E-46 |
| MS.gene050737 | MS.gene75412 | 0.801996 | 6.92E-49 | -1.69E-46 |
| MS.gene050838 | MS.gene75412 | 0.846894 | 1.63E-59 | -1.69E-46 |
| MS.gene050941 | MS.gene75412 | 0.840981 | 6.27E-58 | -1.69E-46 |
| MS.gene051003 | MS.gene75412 | 0.835729 | 1.42E-56 | -1.69E-46 |
| MS.gene051102 | MS.gene75412 | 0.800858 | 1.18E-48 | -1.69E-46 |
| MS.gene051184 | MS.gene75412 | 0.812915 | 3.33E-51 | -1.69E-46 |
| MS.gene051343 | MS.gene75412 | 0.825015 | 5.90E-54 | -1.69E-46 |
| MS.gene051490 | MS.gene75412 | 0.831644 | 1.49E-55 | -1.69E-46 |
| MS.gene051676 | MS.gene75412 | 0.814617 | 1.41E-51 | -1.69E-46 |
| MS.gene051757 | MS.gene75412 | 0.829286 | 5.60E-55 | -1.69E-46 |
| MS.gene051831 | MS.gene75412 | 0.824653 | 7.18E-54 | -1.69E-46 |
| MS.gene051852 | MS.gene75412 | 0.805356 | 1.39E-49 | -1.69E-46 |
| MS.gene051853 | MS.gene75412 | 0.823595 | 1.27E-53 | -1.69E-46 |
| MS.gene051975 | MS.gene75412 | 0.839162 | 1.87E-57 | -1.69E-46 |
| MS.gene052052 | MS.gene75412 | 0.800783 | 1.23E-48 | -1.69E-46 |
| MS.gene052307 | MS.gene75412 | 0.831612 | 1.51E-55 | -1.69E-46 |
| MS.gene052342 | MS.gene75412 | 0.821266 | 4.42E-53 | -1.69E-46 |
| MS.gene052434 | MS.gene75412 | 0.850225 | 1.95E-60 | -1.69E-46 |
| MS.gene052609 | MS.gene75412 | 0.815541 | 8.77E-52 | -1.69E-46 |
| MS.gene053058 | MS.gene75412 | 0.812752 | 3.62E-51 | -1.69E-46 |
| MS.gene053079 | MS.gene75412 | 0.806521 | 7.90E-50 | -1.69E-46 |
| MS.gene053381 | MS.gene75412 | 0.852097 | 5.77E-61 | -1.69E-46 |
| MS.gene053786 | MS.gene75412 | 0.8028 | 4.72E-49 | -1.69E-46 |
| MS.gene054823 | MS.gene75412 | 0.818554 | 1.85E-52 | -1.69E-46 |
| MS.gene05517 | MS.gene75412 | 0.800961 | 1.13E-48 | -1.69E-46 |
| MS.gene055311 | MS.gene75412 | 0.84884 | 4.74E-60 | -1.69E-46 |
| MS.gene055313 | MS.gene75412 | 0.846173 | 2.57E-59 | -1.69E-46 |
| MS.gene055314 | MS.gene75412 | 0.834628 | 2.68E-56 | -1.69E-46 |
| MS.gene055469 | MS.gene75412 | 0.809326 | 2.00E-50 | -1.69E-46 |
| MS.gene055513 | MS.gene75412 | 0.851429 | 8.92E-61 | -1.69E-46 |
| MS.gene055603 | MS.gene75412 | 0.824496 | 7.82E-54 | -1.69E-46 |
| MS.gene055864 | MS.gene75412 | 0.829706 | 4.43E-55 | -1.69E-46 |
| MS.gene056097 | MS.gene75412 | 0.815252 | 1.02E-51 | -1.69E-46 |
| MS.gene056181 | MS.gene75412 | 0.855913 | 4.59E-62 | -1.69E-46 |
| MS.gene056390 | MS.gene75412 | 0.807125 | 5.89E-50 | -1.69E-46 |
| MS.gene056432 | MS.gene75412 | 0.802295 | 6.00E-49 | -1.69E-46 |
| MS.gene056638 | MS.gene75412 | 0.831698 | 1.44E-55 | -1.69E-46 |
| MS.gene056699 | MS.gene75412 | 0.826633 | 2.44E-54 | -1.69E-46 |
| MS.gene056752 | MS.gene75412 | 0.808733 | 2.68E-50 | -1.69E-46 |
| MS.gene056787 | MS.gene75412 | 0.848712 | 5.15E-60 | -1.69E-46 |
| MS.gene056831 | MS.gene75412 | 0.807929 | 3.98E-50 | -1.69E-46 |
| MS.gene056986 | MS.gene75412 | 0.833056 | 6.64E-56 | -1.69E-46 |
| MS.gene056992 | MS.gene75412 | 0.821806 | 3.32E-53 | -1.69E-46 |
| MS.gene057034 | MS.gene75412 | 0.804277 | 2.33E-49 | -1.69E-46 |
| MS.gene057360 | MS.gene75412 | 0.830828 | 2.36E-55 | -1.69E-46 |
| MS.gene057890 | MS.gene75412 | -0.827156 | 1.83E-54 | -1.69E-46 |
| MS.gene057999 | MS.gene75412 | 0.814564 | 1.44E-51 | -1.69E-46 |
| MS.gene058278 | MS.gene75412 | 0.808066 | 3.72E-50 | -1.69E-46 |
| MS.gene058638 | MS.gene75412 | 0.823587 | 1.28E-53 | -1.69E-46 |
| MS.gene058639 | MS.gene75412 | 0.834351 | 3.15E-56 | -1.69E-46 |
| MS.gene058646 | MS.gene75412 | 0.820395 | 7.02E-53 | -1.69E-46 |
| MS.gene058654 | MS.gene75412 | 0.825632 | 4.22E-54 | -1.69E-46 |
| MS.gene058758 | MS.gene75412 | 0.857497 | 1.57E-62 | -1.69E-46 |
| MS.gene059170 | MS.gene75412 | 0.842843 | 2.02E-58 | -1.69E-46 |
| MS.gene059171 | MS.gene75412 | 0.81387 | 2.06E-51 | -1.69E-46 |
| MS.gene059283 | MS.gene75412 | 0.801023 | 1.09E-48 | -1.69E-46 |
| MS.gene059360 | MS.gene75412 | 0.82493 | 6.18E-54 | -1.69E-46 |
| MS.gene059622 | MS.gene75412 | 0.806026 | 1.00E-49 | -1.69E-46 |
| MS.gene059623 | MS.gene75412 | 0.815319 | 9.82E-52 | -1.69E-46 |
| MS.gene059713 | MS.gene75412 | 0.800498 | 1.40E-48 | -1.69E-46 |
| MS.gene059725 | MS.gene75412 | 0.801285 | 9.68E-49 | -1.69E-46 |
| MS.gene059774 | MS.gene75412 | 0.818197 | 2.22E-52 | -1.69E-46 |
| MS.gene059965 | MS.gene75412 | 0.822605 | 2.17E-53 | -1.69E-46 |
| MS.gene06010 | MS.gene75412 | 0.843724 | 1.18E-58 | -1.69E-46 |
| MS.gene06011 | MS.gene75412 | 0.831403 | 1.70E-55 | -1.69E-46 |
| MS.gene060296 | MS.gene75412 | 0.816238 | 6.13E-52 | -1.69E-46 |
| MS.gene060563 | MS.gene75412 | 0.801824 | 7.50E-49 | -1.69E-46 |
| MS.gene060637 | MS.gene75412 | 0.821831 | 3.28E-53 | -1.69E-46 |
| MS.gene060697 | MS.gene75412 | 0.81735 | 3.45E-52 | -1.69E-46 |
| MS.gene060869 | MS.gene75412 | 0.830631 | 2.63E-55 | -1.69E-46 |
| MS.gene060870 | MS.gene75412 | 0.82615 | 3.18E-54 | -1.69E-46 |
| MS.gene060932 | MS.gene75412 | 0.81439 | 1.58E-51 | -1.69E-46 |
| MS.gene061006 | MS.gene75412 | 0.833318 | 5.71E-56 | -1.69E-46 |
| MS.gene061100 | MS.gene75412 | 0.824568 | 7.52E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 33 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACATGAGTGAAGGTTTAT+TGG | 0.304812 | 3.1:-87548838 | MS.gene75412:CDS |
| TCCTGAAGCAATGTCTTTGT+TGG | 0.330602 | 3.1:+87546292 | None:intergenic |
| TGAAATCCTCCTCCACTTCC+TGG | 0.332125 | 3.1:+87546258 | None:intergenic |
| TATTAGTCACCTTTCAAATC+AGG | 0.362648 | 3.1:+87547929 | None:intergenic |
| GTCAAAGCAAATTCAATTCA+AGG | 0.385597 | 3.1:-87548798 | MS.gene75412:intron |
| GGAAATAGAAAGACTAGAAA+AGG | 0.394170 | 3.1:-87546372 | MS.gene75412:CDS |
| TAGGAGCTACAAGGGTTTGA+TGG | 0.418648 | 3.1:-87546333 | MS.gene75412:CDS |
| TTCAGGAAGCAAATCATTCC+AGG | 0.424780 | 3.1:-87546276 | MS.gene75412:CDS |
| TCCAACAAAGACATTGCTTC+AGG | 0.427259 | 3.1:-87546293 | MS.gene75412:CDS |
| CTTCAGCCCATGTTTATGTC+AGG | 0.447158 | 3.1:-87548884 | MS.gene75412:CDS |
| AGATAAATGAGATTGTTAAC+AGG | 0.451759 | 3.1:-87547979 | MS.gene75412:CDS |
| AGGAGAAACAATCAGAGCTT+AGG | 0.472437 | 3.1:-87546352 | MS.gene75412:CDS |
| TTTAAAGAAAACTGCTTCGA+TGG | 0.487046 | 3.1:-87548209 | MS.gene75412:CDS |
| CTAGTCTTTCTATTTCCTCA+CGG | 0.488887 | 3.1:+87546378 | None:intergenic |
| AAGCAAATCATTCCAGGAAG+TGG | 0.495884 | 3.1:-87546270 | MS.gene75412:CDS |
| TTGATGTTGTTTACACTCCC+TGG | 0.498834 | 3.1:-87548237 | MS.gene75412:CDS |
| TCGATGGACGTTGGTCAAGT+TGG | 0.525188 | 3.1:-87548193 | MS.gene75412:CDS |
| ATCATTCCAGGAAGTGGAGG+AGG | 0.526776 | 3.1:-87546264 | MS.gene75412:CDS |
| ATCAGAGCTTAGGAGCTACA+AGG | 0.570116 | 3.1:-87546342 | MS.gene75412:CDS |
| GAAAGAAAACCTGATTTGAA+AGG | 0.573575 | 3.1:-87547938 | MS.gene75412:intron |
| TGCTGCTGAAAGAGCTGGAG+AGG | 0.597104 | 3.1:-87547687 | MS.gene75412:intron |
| TGTGCAGCCTGACATAAACA+TGG | 0.601148 | 3.1:+87548877 | None:intergenic |
| ACTATTGATGACATGAGTGA+AGG | 0.607342 | 3.1:-87548846 | MS.gene75412:CDS |
| CAAATCATTCCAGGAAGTGG+AGG | 0.612983 | 3.1:-87546267 | MS.gene75412:CDS |
| CTGAAGACATCTTATCAACA+TGG | 0.615104 | 3.1:+87548901 | None:intergenic |
| CAGGCTAAACAAAACGAAGG+TGG | 0.619805 | 3.1:-87547960 | MS.gene75412:CDS |
| TTAGGTGCGAACTGTGAGAG+TGG | 0.624552 | 3.1:-87548008 | MS.gene75412:intron |
| TCAGAGCTTAGGAGCTACAA+GGG | 0.638922 | 3.1:-87546341 | MS.gene75412:CDS |
| AAAACTGCTTCGATGGACGT+TGG | 0.639922 | 3.1:-87548202 | MS.gene75412:CDS |
| GTTTATGTCAGGCTGCACAA+AGG | 0.698981 | 3.1:-87548873 | MS.gene75412:CDS |
| CTGTGTGCAGAAGCGCCGTG+AGG | 0.707586 | 3.1:-87546393 | MS.gene75412:intron |
| GTGCAGCCTGACATAAACAT+GGG | 0.715437 | 3.1:+87548878 | None:intergenic |
| TAACAGGCTAAACAAAACGA+AGG | 0.733246 | 3.1:-87547963 | MS.gene75412:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATTTATGATTAGAATTTA+TGG | - | chr3.1:87547289-87547308 | MS.gene75412:intron | 15.0% |
| !! | ATGTTAAAAAAAACCTATAA+AGG | + | chr3.1:87547273-87547292 | None:intergenic | 15.0% |
| !! | AATTTGTCATAAGCTTAAAA+AGG | + | chr3.1:87546687-87546706 | None:intergenic | 20.0% |
| !! | ACTTGAAAGAATACATAAAA+TGG | + | chr3.1:87546446-87546465 | None:intergenic | 20.0% |
| !! | ATAAACAGATAGAAAATACT+AGG | - | chr3.1:87547991-87548010 | MS.gene75412:CDS | 20.0% |
| !! | ATTTGTCATAAGCTTAAAAA+GGG | + | chr3.1:87546686-87546705 | None:intergenic | 20.0% |
| !! | CTACTGCAAAAAAAAAAAAA+AGG | + | chr3.1:87547064-87547083 | None:intergenic | 20.0% |
| !! | TAATTTCAACTTATACAAGA+AGG | + | chr3.1:87546609-87546628 | None:intergenic | 20.0% |
| !! | TACTAAAAGTCATTATAATC+CGG | - | chr3.1:87547936-87547955 | MS.gene75412:intron | 20.0% |
| !!! | TACCTTTTTTTCTTTATTCA+TGG | - | chr3.1:87546876-87546895 | MS.gene75412:intron | 20.0% |
| !!! | TTTTTTTTTTTGCAGTAGTT+GGG | - | chr3.1:87547066-87547085 | MS.gene75412:intron | 20.0% |
| !!! | TTTTTTTTTTTTGCAGTAGT+TGG | - | chr3.1:87547065-87547084 | MS.gene75412:intron | 20.0% |
| ! | AAAAAAAACCTATAAAGGCA+AGG | + | chr3.1:87547268-87547287 | None:intergenic | 25.0% |
| ! | AGATAAATGAGATTGTTAAC+AGG | - | chr3.1:87547178-87547197 | MS.gene75412:intron | 25.0% |
| ! | ATTAGAATTTATGGATGAAG+AGG | - | chr3.1:87547298-87547317 | MS.gene75412:intron | 25.0% |
| ! | TAAGTTAACAGTATATCATG+AGG | + | chr3.1:87547713-87547732 | None:intergenic | 25.0% |
| ! | TATATTGTGCTTAGATACTT+TGG | + | chr3.1:87547561-87547580 | None:intergenic | 25.0% |
| ! | TATCTGTTTATTTCAGCATT+GGG | + | chr3.1:87547982-87548001 | None:intergenic | 25.0% |
| ! | TGCCATGAATAAAGAAAAAA+AGG | + | chr3.1:87546881-87546900 | None:intergenic | 25.0% |
| ! | TTATGAGTTTGACAATGATA+TGG | + | chr3.1:87548045-87548064 | None:intergenic | 25.0% |
| ! | TTCACAATATAACATCCTAA+AGG | + | chr3.1:87548585-87548604 | None:intergenic | 25.0% |
| ! | TTTATAACTGGAAATCTGAA+AGG | - | chr3.1:87546485-87546504 | MS.gene75412:intron | 25.0% |
| !! | GATTTTACATTAGATTACTC+AGG | - | chr3.1:87547788-87547807 | MS.gene75412:intron | 25.0% |
| !! | GCTTATGACAAATTTTTCTT+AGG | - | chr3.1:87546693-87546712 | MS.gene75412:intron | 25.0% |
| !! | TTTTATTAGATCTTGACCAA+TGG | - | chr3.1:87548081-87548100 | MS.gene75412:intron | 25.0% |
| !!! | GAAGATATTTCATTTTTAGC+AGG | + | chr3.1:87548658-87548677 | None:intergenic | 25.0% |
| !!! | TTTTTTCTTTATTCATGGCA+GGG | - | chr3.1:87546881-87546900 | MS.gene75412:intron | 25.0% |
| !!! | TTTTTTTCTTTATTCATGGC+AGG | - | chr3.1:87546880-87546899 | MS.gene75412:intron | 25.0% |
| !!! | TTTTTTTTTTGCAGTAGTTG+GGG | - | chr3.1:87547067-87547086 | MS.gene75412:intron | 25.0% |
| AACAACTAGAATAAGAACAC+CGG | + | chr3.1:87547958-87547977 | None:intergenic | 30.0% | |
| ACAATACATTGTTGTATACC+TGG | + | chr3.1:87547663-87547682 | None:intergenic | 30.0% | |
| ATCACTAACAGCACAAAATT+AGG | + | chr3.1:87546856-87546875 | None:intergenic | 30.0% | |
| ATGTATTGTCACATACATCA+TGG | - | chr3.1:87547674-87547693 | MS.gene75412:CDS | 30.0% | |
| CAAGATATTTCATTGTTAGC+AGG | + | chr3.1:87548349-87548368 | None:intergenic | 30.0% | |
| CACTTTAGACTATCATTATC+TGG | - | chr3.1:87547114-87547133 | MS.gene75412:intron | 30.0% | |
| CATTTCAGTGCATTTATAAC+TGG | - | chr3.1:87546473-87546492 | MS.gene75412:intron | 30.0% | |
| CTATCTGTTTATTTCAGCAT+TGG | + | chr3.1:87547983-87548002 | None:intergenic | 30.0% | |
| GAAGCTATTGTTCAAAAAAC+TGG | + | chr3.1:87546584-87546603 | None:intergenic | 30.0% | |
| GGAAATAGAAAGACTAGAAA+AGG | - | chr3.1:87548785-87548804 | MS.gene75412:intron | 30.0% | |
| GTCAAAGCAAATTCAATTCA+AGG | - | chr3.1:87546359-87546378 | MS.gene75412:CDS | 30.0% | |
| TAAAACCTAGTATGAGAACT+AGG | + | chr3.1:87546784-87546803 | None:intergenic | 30.0% | |
| TATTAGTCACCTTTCAAATC+AGG | + | chr3.1:87547231-87547250 | None:intergenic | 30.0% | |
| TGAACTTTGTTGAGAATTTG+AGG | - | chr3.1:87548601-87548620 | MS.gene75412:intron | 30.0% | |
| TTTAAAGAAAACTGCTTCGA+TGG | - | chr3.1:87546948-87546967 | MS.gene75412:intron | 30.0% | |
| TTTGTTGAGAATTTGAGGAT+CGG | - | chr3.1:87548606-87548625 | MS.gene75412:intron | 30.0% | |
| ! | AGTTTTCTTTAAATTGGACC+AGG | + | chr3.1:87546941-87546960 | None:intergenic | 30.0% |
| ! | CGAAGCAGTTTTCTTTAAAT+TGG | + | chr3.1:87546947-87546966 | None:intergenic | 30.0% |
| ! | GAAAGAAAACCTGATTTGAA+AGG | - | chr3.1:87547219-87547238 | MS.gene75412:intron | 30.0% |
| ! | GTTTTCTTTAAATTGGACCA+GGG | + | chr3.1:87546940-87546959 | None:intergenic | 30.0% |
| ! | TGGTTTTCACAACTCAAAAA+TGG | - | chr3.1:87546984-87547003 | MS.gene75412:intron | 30.0% |
| ! | TTTGTATCTTGTTGTCCTTT+AGG | - | chr3.1:87548567-87548586 | MS.gene75412:intron | 30.0% |
| !! | ATTTAAGTTTTCCTATGTCC+TGG | - | chr3.1:87548207-87548226 | MS.gene75412:CDS | 30.0% |
| !! | TTTCCATCTTGTTGTTCTTT+AGG | - | chr3.1:87548257-87548276 | MS.gene75412:CDS | 30.0% |
| !!! | AAATGGTCTGTTTTTACACT+TGG | - | chr3.1:87547001-87547020 | MS.gene75412:intron | 30.0% |
| AACAGCACAAAATTAGGCTA+TGG | + | chr3.1:87546850-87546869 | None:intergenic | 35.0% | |
| ACTAAATGCCAATTCAAACC+TGG | - | chr3.1:87546758-87546777 | MS.gene75412:intron | 35.0% | |
| AGAATACATAAAATGGCCCT+TGG | + | chr3.1:87546439-87546458 | None:intergenic | 35.0% | |
| ATCGCGATTAATTATTCCTC+TGG | - | chr3.1:87546388-87546407 | MS.gene75412:intron | 35.0% | |
| ATCTAGCCATTTAGTCATTG+TGG | - | chr3.1:87547351-87547370 | MS.gene75412:intron | 35.0% | |
| CATCCTAAAGAACAACAAGA+TGG | + | chr3.1:87548263-87548282 | None:intergenic | 35.0% | |
| CTATTCTTCCTTGCCTTTAT+AGG | - | chr3.1:87547257-87547276 | MS.gene75412:intron | 35.0% | |
| CTGAAGACATCTTATCAACA+TGG | + | chr3.1:87546259-87546278 | None:intergenic | 35.0% | |
| GTGGTGTCTAATGTACAATA+TGG | - | chr3.1:87547370-87547389 | MS.gene75412:intron | 35.0% | |
| TAACAGGCTAAACAAAACGA+AGG | - | chr3.1:87547194-87547213 | MS.gene75412:intron | 35.0% | |
| TAGACACCACAATGACTAAA+TGG | + | chr3.1:87547360-87547379 | None:intergenic | 35.0% | |
| TCAGCTGAGTCGAATTAAAT+TGG | + | chr3.1:87547399-87547418 | None:intergenic | 35.0% | |
| TGACATGAGTGAAGGTTTAT+TGG | - | chr3.1:87546319-87546338 | MS.gene75412:CDS | 35.0% | |
| TTGTTGAGAATTTGAGGATC+GGG | - | chr3.1:87548607-87548626 | MS.gene75412:intron | 35.0% | |
| ! | ACTATTGATGACATGAGTGA+AGG | - | chr3.1:87546311-87546330 | MS.gene75412:CDS | 35.0% |
| ! | AGCTGATCTTGTTATCTATG+CGG | - | chr3.1:87547413-87547432 | MS.gene75412:intron | 35.0% |
| ! | CTAGTCTTTCTATTTCCTCA+CGG | + | chr3.1:87548782-87548801 | None:intergenic | 35.0% |
| ! | TTTTATCTTTCCTCTGTCCT+AGG | - | chr3.1:87548520-87548539 | MS.gene75412:intron | 35.0% |
| !!! | ATCTGGCTTTTGTGCATTTT+AGG | - | chr3.1:87547131-87547150 | MS.gene75412:intron | 35.0% |
| !!! | CAGGCTAGTGATTATTTTAG+AGG | - | chr3.1:87547807-87547826 | MS.gene75412:intron | 35.0% |
| AAATCTGTACACTTGCATCC+AGG | - | chr3.1:87547642-87547661 | MS.gene75412:intron | 40.0% | |
| AAGAAGACACCATGAACCTT+AGG | + | chr3.1:87548633-87548652 | None:intergenic | 40.0% | |
| AAGCAAATCATTCCAGGAAG+TGG | - | chr3.1:87548887-87548906 | MS.gene75412:CDS | 40.0% | |
| AGGAGAAACAATCAGAGCTT+AGG | - | chr3.1:87548805-87548824 | MS.gene75412:CDS | 40.0% | |
| GCACAAAATTAGGCTATGGA+AGG | + | chr3.1:87546846-87546865 | None:intergenic | 40.0% | |
| GGTTGTGCTTCGAAACAAAT+TGG | - | chr3.1:87548102-87548121 | MS.gene75412:intron | 40.0% | |
| TCCAACAAAGACATTGCTTC+AGG | - | chr3.1:87548864-87548883 | MS.gene75412:CDS | 40.0% | |
| TCCTGAAGCAATGTCTTTGT+TGG | + | chr3.1:87548868-87548887 | None:intergenic | 40.0% | |
| TTCAGGAAGCAAATCATTCC+AGG | - | chr3.1:87548881-87548900 | MS.gene75412:CDS | 40.0% | |
| TTGTTTCGAAGCACAACCAT+TGG | + | chr3.1:87548100-87548119 | None:intergenic | 40.0% | |
| ! | GCTGATCTTGTTATCTATGC+GGG | - | chr3.1:87547414-87547433 | MS.gene75412:intron | 40.0% |
| ! | TTGATGTTGTTTACACTCCC+TGG | - | chr3.1:87546920-87546939 | MS.gene75412:intron | 40.0% |
| !! | TCTGAAAGGCTAAGAGCATT+TGG | - | chr3.1:87546499-87546518 | MS.gene75412:intron | 40.0% |
| !!! | GAATTTTAGAATCCAGCCCA+AGG | - | chr3.1:87548305-87548324 | MS.gene75412:intron | 40.0% |
| !!! | TTTTTTTGCAGTAGTTGGGG+TGG | - | chr3.1:87547070-87547089 | MS.gene75412:intron | 40.0% |
| AAAACTGCTTCGATGGACGT+TGG | - | chr3.1:87546955-87546974 | MS.gene75412:intron | 45.0% | |
| AAAGAAGACACCGTGAACCT+TGG | + | chr3.1:87548325-87548344 | None:intergenic | 45.0% | |
| AAGAAGACACCGTGAACCTT+GGG | + | chr3.1:87548324-87548343 | None:intergenic | 45.0% | |
| ACTGCTATGTGCATTCTCCT+CGG | - | chr3.1:87548474-87548493 | MS.gene75412:intron | 45.0% | |
| AGTAGACAAATTATGCCCCG+AGG | + | chr3.1:87548494-87548513 | None:intergenic | 45.0% | |
| ATAAAATGGCCCTTGGTCCT+TGG | + | chr3.1:87546432-87546451 | None:intergenic | 45.0% | |
| ATCAGAGCTTAGGAGCTACA+AGG | - | chr3.1:87548815-87548834 | MS.gene75412:CDS | 45.0% | |
| CAAATCATTCCAGGAAGTGG+AGG | - | chr3.1:87548890-87548909 | MS.gene75412:CDS | 45.0% | |
| CAGGCTAAACAAAACGAAGG+TGG | - | chr3.1:87547197-87547216 | MS.gene75412:intron | 45.0% | |
| CATGGCAGGTAAAAAGACAG+CGG | + | chr3.1:87548151-87548170 | None:intergenic | 45.0% | |
| CTTCAGCCCATGTTTATGTC+AGG | - | chr3.1:87546273-87546292 | MS.gene75412:CDS | 45.0% | |
| GAACTAGGCCAGGTTTGAAT+TGG | + | chr3.1:87546769-87546788 | None:intergenic | 45.0% | |
| GCCATGTTGCATTCTCTTCA+GGG | - | chr3.1:87548165-87548184 | MS.gene75412:intron | 45.0% | |
| GTGCAGCCTGACATAAACAT+GGG | + | chr3.1:87546282-87546301 | None:intergenic | 45.0% | |
| GTTTATGTCAGGCTGCACAA+AGG | - | chr3.1:87546284-87546303 | MS.gene75412:CDS | 45.0% | |
| TAAAATGGCCCTTGGTCCTT+GGG | + | chr3.1:87546431-87546450 | None:intergenic | 45.0% | |
| TAGGAGCTACAAGGGTTTGA+TGG | - | chr3.1:87548824-87548843 | MS.gene75412:CDS | 45.0% | |
| TCAGAGCTTAGGAGCTACAA+GGG | - | chr3.1:87548816-87548835 | MS.gene75412:CDS | 45.0% | |
| TGAAGAGAATGCAACATGGC+AGG | + | chr3.1:87548165-87548184 | None:intergenic | 45.0% | |
| TGCCATGTTGCATTCTCTTC+AGG | - | chr3.1:87548164-87548183 | MS.gene75412:intron | 45.0% | |
| TGTGCAGCCTGACATAAACA+TGG | + | chr3.1:87546283-87546302 | None:intergenic | 45.0% | |
| TTAGTTGACCCAAGGACCAA+GGG | - | chr3.1:87546420-87546439 | MS.gene75412:intron | 45.0% | |
| ! | AAAGTACTCAAGCAGTGCCT+AGG | + | chr3.1:87548540-87548559 | None:intergenic | 45.0% |
| ! | GAGGCAACTGTGTACTGTTT+TGG | - | chr3.1:87547317-87547336 | MS.gene75412:intron | 45.0% |
| AAGCAAGTGCACCAGGACAT+AGG | + | chr3.1:87548221-87548240 | None:intergenic | 50.0% | |
| AGAACTCAAGCAAGTGCACC+AGG | + | chr3.1:87548228-87548247 | None:intergenic | 50.0% | |
| AGAATCCAGCCCAAGGTTCA+CGG | - | chr3.1:87548312-87548331 | MS.gene75412:intron | 50.0% | |
| ATCATTCCAGGAAGTGGAGG+AGG | - | chr3.1:87548893-87548912 | MS.gene75412:CDS | 50.0% | |
| ATTGCTGCTGCTGAAAGAGC+TGG | - | chr3.1:87547465-87547484 | MS.gene75412:intron | 50.0% | |
| CAACTAAGCGGATAGACCAG+AGG | + | chr3.1:87546407-87546426 | None:intergenic | 50.0% | |
| CCTAGTATGAGAACTAGGCC+AGG | + | chr3.1:87546779-87546798 | None:intergenic | 50.0% | |
| CTATCCGCTTAGTTGACCCA+AGG | - | chr3.1:87546412-87546431 | MS.gene75412:intron | 50.0% | |
| CTGCTATGTGCATTCTCCTC+GGG | - | chr3.1:87548475-87548494 | MS.gene75412:intron | 50.0% | |
| CTTAGTTGACCCAAGGACCA+AGG | - | chr3.1:87546419-87546438 | MS.gene75412:intron | 50.0% | |
| GAATTTGAGGATCGGGCCTA+AGG | - | chr3.1:87548614-87548633 | MS.gene75412:intron | 50.0% | |
| GCCCTGAAGAGAATGCAACA+TGG | + | chr3.1:87548169-87548188 | None:intergenic | 50.0% | |
| TCGATGGACGTTGGTCAAGT+TGG | - | chr3.1:87546964-87546983 | MS.gene75412:intron | 50.0% | |
| TGAAATCCTCCTCCACTTCC+TGG | + | chr3.1:87548902-87548921 | None:intergenic | 50.0% | |
| TGCTATGTGCATTCTCCTCG+GGG | - | chr3.1:87548476-87548495 | MS.gene75412:intron | 50.0% | |
| TGGTCCTTGGGTCAACTAAG+CGG | + | chr3.1:87546419-87546438 | None:intergenic | 50.0% | |
| TTAGGTGCGAACTGTGAGAG+TGG | - | chr3.1:87547149-87547168 | MS.gene75412:intron | 50.0% | |
| ! | CCTGGCCTAGTTCTCATACT+AGG | - | chr3.1:87546776-87546795 | MS.gene75412:intron | 50.0% |
| AGGATCGGGCCTAAGGTTCA+TGG | - | chr3.1:87548621-87548640 | MS.gene75412:intron | 55.0% | |
| TCAAGCAGTGCCTAGGACAG+AGG | + | chr3.1:87548533-87548552 | None:intergenic | 55.0% | |
| TGCTGCTGAAAGAGCTGGAG+AGG | - | chr3.1:87547470-87547489 | MS.gene75412:intron | 55.0% | |
| TTGCAGTAGTTGGGGTGGCT+GGG | - | chr3.1:87547075-87547094 | MS.gene75412:intron | 55.0% | |
| TTTGCAGTAGTTGGGGTGGC+TGG | - | chr3.1:87547074-87547093 | MS.gene75412:intron | 55.0% | |
| AGACACCGTGAACCTTGGGC+TGG | + | chr3.1:87548320-87548339 | None:intergenic | 60.0% | |
| !! | CTGTGTGCAGAAGCGCCGTG+AGG | - | chr3.1:87548764-87548783 | MS.gene75412:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 87546253 | 87548926 | 87546253 | ID=MS.gene75412 |
| chr3.1 | mRNA | 87546253 | 87548926 | 87546253 | ID=MS.gene75412.t1;Parent=MS.gene75412 |
| chr3.1 | exon | 87548799 | 87548926 | 87548799 | ID=MS.gene75412.t1.exon1;Parent=MS.gene75412.t1 |
| chr3.1 | CDS | 87548799 | 87548926 | 87548799 | ID=cds.MS.gene75412.t1;Parent=MS.gene75412.t1 |
| chr3.1 | exon | 87548174 | 87548277 | 87548174 | ID=MS.gene75412.t1.exon2;Parent=MS.gene75412.t1 |
| chr3.1 | CDS | 87548174 | 87548277 | 87548174 | ID=cds.MS.gene75412.t1;Parent=MS.gene75412.t1 |
| chr3.1 | exon | 87547939 | 87548026 | 87547939 | ID=MS.gene75412.t1.exon3;Parent=MS.gene75412.t1 |
| chr3.1 | CDS | 87547939 | 87548026 | 87547939 | ID=cds.MS.gene75412.t1;Parent=MS.gene75412.t1 |
| chr3.1 | exon | 87547666 | 87547697 | 87547666 | ID=MS.gene75412.t1.exon4;Parent=MS.gene75412.t1 |
| chr3.1 | CDS | 87547666 | 87547697 | 87547666 | ID=cds.MS.gene75412.t1;Parent=MS.gene75412.t1 |
| chr3.1 | exon | 87546253 | 87546405 | 87546253 | ID=MS.gene75412.t1.exon5;Parent=MS.gene75412.t1 |
| chr3.1 | CDS | 87546253 | 87546405 | 87546253 | ID=cds.MS.gene75412.t1;Parent=MS.gene75412.t1 |
| Gene Sequence |
| Protein sequence |
