Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76634.t1 | XP_003613878.1 | 99.1 | 333 | 3 | 0 | 1 | 333 | 155 | 487 | 4.50E-203 | 716.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76634.t1 | G7JWG4 | 99.1 | 333 | 3 | 0 | 1 | 333 | 155 | 487 | 3.3e-203 | 716.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049153 | MS.gene76634 | 0.802609 | 5.17E-49 | -1.69E-46 |
| MS.gene049356 | MS.gene76634 | 0.8468 | 1.73E-59 | -1.69E-46 |
| MS.gene049369 | MS.gene76634 | 0.814393 | 1.58E-51 | -1.69E-46 |
| MS.gene049427 | MS.gene76634 | 0.803237 | 3.84E-49 | -1.69E-46 |
| MS.gene049488 | MS.gene76634 | 0.861312 | 1.12E-63 | -1.69E-46 |
| MS.gene049661 | MS.gene76634 | 0.829494 | 4.99E-55 | -1.69E-46 |
| MS.gene049662 | MS.gene76634 | 0.824461 | 7.97E-54 | -1.69E-46 |
| MS.gene049805 | MS.gene76634 | 0.822039 | 2.93E-53 | -1.69E-46 |
| MS.gene050426 | MS.gene76634 | -0.805342 | 1.40E-49 | -1.69E-46 |
| MS.gene050670 | MS.gene76634 | 0.857075 | 2.09E-62 | -1.69E-46 |
| MS.gene050971 | MS.gene76634 | 0.821013 | 5.06E-53 | -1.69E-46 |
| MS.gene05105 | MS.gene76634 | 0.841591 | 4.33E-58 | -1.69E-46 |
| MS.gene051582 | MS.gene76634 | 0.80732 | 5.35E-50 | -1.69E-46 |
| MS.gene052011 | MS.gene76634 | -0.808764 | 2.64E-50 | -1.69E-46 |
| MS.gene052135 | MS.gene76634 | 0.807731 | 4.38E-50 | -1.69E-46 |
| MS.gene052188 | MS.gene76634 | 0.867709 | 1.12E-65 | -1.69E-46 |
| MS.gene052253 | MS.gene76634 | 0.868119 | 8.27E-66 | -1.69E-46 |
| MS.gene052310 | MS.gene76634 | 0.830336 | 3.11E-55 | -1.69E-46 |
| MS.gene052322 | MS.gene76634 | 0.809878 | 1.52E-50 | -1.69E-46 |
| MS.gene052340 | MS.gene76634 | 0.855694 | 5.31E-62 | -1.69E-46 |
| MS.gene052414 | MS.gene76634 | 0.831967 | 1.24E-55 | -1.69E-46 |
| MS.gene052421 | MS.gene76634 | 0.828189 | 1.03E-54 | -1.69E-46 |
| MS.gene052481 | MS.gene76634 | 0.845623 | 3.62E-59 | -1.69E-46 |
| MS.gene052484 | MS.gene76634 | 0.823837 | 1.12E-53 | -1.69E-46 |
| MS.gene052485 | MS.gene76634 | 0.850763 | 1.38E-60 | -1.69E-46 |
| MS.gene053449 | MS.gene76634 | 0.807413 | 5.12E-50 | -1.69E-46 |
| MS.gene053758 | MS.gene76634 | 0.859266 | 4.66E-63 | -1.69E-46 |
| MS.gene053912 | MS.gene76634 | 0.852375 | 4.81E-61 | -1.69E-46 |
| MS.gene054123 | MS.gene76634 | 0.804136 | 2.50E-49 | -1.69E-46 |
| MS.gene054183 | MS.gene76634 | 0.815982 | 6.99E-52 | -1.69E-46 |
| MS.gene054349 | MS.gene76634 | 0.804744 | 1.86E-49 | -1.69E-46 |
| MS.gene05505 | MS.gene76634 | 0.803263 | 3.79E-49 | -1.69E-46 |
| MS.gene055116 | MS.gene76634 | 0.856532 | 3.02E-62 | -1.69E-46 |
| MS.gene055412 | MS.gene76634 | 0.806526 | 7.88E-50 | -1.69E-46 |
| MS.gene055486 | MS.gene76634 | 0.823201 | 1.57E-53 | -1.69E-46 |
| MS.gene05553 | MS.gene76634 | 0.816893 | 4.37E-52 | -1.69E-46 |
| MS.gene056233 | MS.gene76634 | 0.815267 | 1.01E-51 | -1.69E-46 |
| MS.gene056337 | MS.gene76634 | 0.802155 | 6.42E-49 | -1.69E-46 |
| MS.gene056511 | MS.gene76634 | 0.872563 | 2.89E-67 | -1.69E-46 |
| MS.gene056514 | MS.gene76634 | 0.801952 | 7.06E-49 | -1.69E-46 |
| MS.gene056659 | MS.gene76634 | 0.849125 | 3.95E-60 | -1.69E-46 |
| MS.gene056899 | MS.gene76634 | -0.800677 | 1.29E-48 | -1.69E-46 |
| MS.gene05702 | MS.gene76634 | 0.825879 | 3.68E-54 | -1.69E-46 |
| MS.gene057124 | MS.gene76634 | 0.872618 | 2.77E-67 | -1.69E-46 |
| MS.gene057146 | MS.gene76634 | 0.806759 | 7.04E-50 | -1.69E-46 |
| MS.gene057207 | MS.gene76634 | 0.821831 | 3.28E-53 | -1.69E-46 |
| MS.gene057449 | MS.gene76634 | 0.802911 | 4.48E-49 | -1.69E-46 |
| MS.gene057749 | MS.gene76634 | 0.844925 | 5.59E-59 | -1.69E-46 |
| MS.gene057823 | MS.gene76634 | 0.849398 | 3.32E-60 | -1.69E-46 |
| MS.gene057825 | MS.gene76634 | 0.841552 | 4.43E-58 | -1.69E-46 |
| MS.gene058002 | MS.gene76634 | 0.805986 | 1.02E-49 | -1.69E-46 |
| MS.gene058007 | MS.gene76634 | 0.844289 | 8.29E-59 | -1.69E-46 |
| MS.gene058130 | MS.gene76634 | 0.807442 | 5.04E-50 | -1.69E-46 |
| MS.gene058376 | MS.gene76634 | 0.818111 | 2.32E-52 | -1.69E-46 |
| MS.gene058660 | MS.gene76634 | 0.815967 | 7.05E-52 | -1.69E-46 |
| MS.gene058710 | MS.gene76634 | 0.806273 | 8.91E-50 | -1.69E-46 |
| MS.gene05886 | MS.gene76634 | 0.841786 | 3.85E-58 | -1.69E-46 |
| MS.gene058928 | MS.gene76634 | 0.896151 | 4.86E-76 | -1.69E-46 |
| MS.gene05907 | MS.gene76634 | 0.803704 | 3.07E-49 | -1.69E-46 |
| MS.gene059141 | MS.gene76634 | 0.841326 | 5.09E-58 | -1.69E-46 |
| MS.gene059285 | MS.gene76634 | 0.835388 | 1.73E-56 | -1.69E-46 |
| MS.gene059366 | MS.gene76634 | 0.828693 | 7.80E-55 | -1.69E-46 |
| MS.gene059420 | MS.gene76634 | 0.856314 | 3.50E-62 | -1.69E-46 |
| MS.gene059455 | MS.gene76634 | 0.807447 | 5.03E-50 | -1.69E-46 |
| MS.gene059462 | MS.gene76634 | 0.81587 | 7.41E-52 | -1.69E-46 |
| MS.gene059597 | MS.gene76634 | 0.815588 | 8.56E-52 | -1.69E-46 |
| MS.gene059674 | MS.gene76634 | 0.801564 | 8.48E-49 | -1.69E-46 |
| MS.gene059676 | MS.gene76634 | 0.802039 | 6.78E-49 | -1.69E-46 |
| MS.gene059688 | MS.gene76634 | 0.861158 | 1.25E-63 | -1.69E-46 |
| MS.gene059692 | MS.gene76634 | 0.842084 | 3.21E-58 | -1.69E-46 |
| MS.gene059695 | MS.gene76634 | 0.838119 | 3.48E-57 | -1.69E-46 |
| MS.gene059711 | MS.gene76634 | 0.810919 | 9.07E-51 | -1.69E-46 |
| MS.gene059807 | MS.gene76634 | 0.829803 | 4.20E-55 | -1.69E-46 |
| MS.gene05984 | MS.gene76634 | 0.811363 | 7.27E-51 | -1.69E-46 |
| MS.gene060247 | MS.gene76634 | 0.814031 | 1.89E-51 | -1.69E-46 |
| MS.gene060403 | MS.gene76634 | 0.836622 | 8.40E-57 | -1.69E-46 |
| MS.gene060837 | MS.gene76634 | 0.821031 | 5.01E-53 | -1.69E-46 |
| MS.gene061049 | MS.gene76634 | 0.831164 | 1.95E-55 | -1.69E-46 |
| MS.gene061051 | MS.gene76634 | -0.80264 | 5.10E-49 | -1.69E-46 |
| MS.gene061159 | MS.gene76634 | 0.832881 | 7.34E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76634.t1 | MTR_5g042100 | 99.099 | 333 | 3 | 0 | 1 | 333 | 155 | 487 | 0.0 | 686 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76634.t1 | AT1G26761 | 59.767 | 343 | 128 | 5 | 1 | 333 | 102 | 444 | 1.08e-143 | 413 |
Find 95 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGAATTAGGTGGGTGAAAT+TGG | 0.139205 | 5.1:-31777002 | MS.gene76634:CDS |
| ATCATGGAAATGGTGATTTA+AGG | 0.149315 | 5.1:-31777090 | MS.gene76634:CDS |
| CATTCATTTGATAAGGAAAA+AGG | 0.213740 | 5.1:-31777058 | MS.gene76634:CDS |
| TTCTCATGATTTAAACCATT+TGG | 0.240997 | 5.1:+31777277 | None:intergenic |
| TAAGTCAAGATGGTAGAAAT+TGG | 0.253222 | 5.1:-31777210 | MS.gene76634:CDS |
| AAACCTTCAAATGATTTAAT+AGG | 0.254419 | 5.1:-31777559 | MS.gene76634:CDS |
| TGTTAATCATGTCTAGTTAC+AGG | 0.300794 | 5.1:-31777399 | MS.gene76634:CDS |
| GGTTTAAATCATGAGAATTT+CGG | 0.313489 | 5.1:-31777271 | MS.gene76634:CDS |
| GGAATTAGGTGGGTGAAATT+GGG | 0.326124 | 5.1:-31777001 | MS.gene76634:CDS |
| CTAGGTCAAGAGATGGAATT+AGG | 0.331250 | 5.1:-31777015 | MS.gene76634:CDS |
| GGTGAAATTGGGGAAAATAA+TGG | 0.336849 | 5.1:-31776990 | MS.gene76634:CDS |
| TCTCATGATTTAAACCATTT+GGG | 0.337213 | 5.1:+31777278 | None:intergenic |
| GAGGTTCTAATGCTGTTTAT+TGG | 0.343998 | 5.1:-31777372 | MS.gene76634:CDS |
| GTTTCGATACTCGCGGAATT+AGG | 0.345083 | 5.1:-31777432 | MS.gene76634:CDS |
| GTGAAATTGGGGAAAATAAT+GGG | 0.348730 | 5.1:-31776989 | MS.gene76634:CDS |
| CACCTGATGGGTTGATGGAA+TGG | 0.376304 | 5.1:-31776829 | MS.gene76634:CDS |
| TTTCGAGCAACGGTGTTCAT+TGG | 0.377175 | 5.1:-31777528 | MS.gene76634:CDS |
| GTATTATCATTCATTTGATA+AGG | 0.387153 | 5.1:-31777065 | MS.gene76634:CDS |
| ATGGGTTGATGGAATGGGTT+AGG | 0.396031 | 5.1:-31776823 | MS.gene76634:CDS |
| ATGTCTAGTTACAGGGTTAG+AGG | 0.399278 | 5.1:-31777391 | MS.gene76634:CDS |
| TTCGAGCAACGGTGTTCATT+GGG | 0.401282 | 5.1:-31777527 | MS.gene76634:CDS |
| ACTCGCGGAATTAGGCCTTC+AGG | 0.403215 | 5.1:-31777424 | MS.gene76634:CDS |
| CAAGTTGTTTATCATGGAAA+TGG | 0.403220 | 5.1:-31777100 | MS.gene76634:CDS |
| TCACCACAAGTTGTTTATCA+TGG | 0.407758 | 5.1:-31777106 | MS.gene76634:CDS |
| AATGGAGGTAGAGTTGGAAT+TGG | 0.408906 | 5.1:-31776671 | MS.gene76634:CDS |
| TATTATAGAGGTGTTGGTAA+TGG | 0.413647 | 5.1:-31776689 | MS.gene76634:CDS |
| ATGTTGGTAAAGAGAAAGAT+TGG | 0.449705 | 5.1:-31777147 | MS.gene76634:CDS |
| AGGCCTATTAAATCATTTGA+AGG | 0.451138 | 5.1:+31777556 | None:intergenic |
| TGATGAATTGTGGTAAAGAT+TGG | 0.461891 | 5.1:-31777459 | MS.gene76634:CDS |
| AGTTTCACCTGATGGGTTGA+TGG | 0.470552 | 5.1:-31776834 | MS.gene76634:CDS |
| AAGTCAAGATGGTAGAAATT+GGG | 0.471060 | 5.1:-31777209 | MS.gene76634:CDS |
| AGAAATTGGGCTAGAATTGA+AGG | 0.475837 | 5.1:-31777196 | MS.gene76634:CDS |
| GGTGTTGCAGTTTCACCTGA+TGG | 0.476150 | 5.1:-31776842 | MS.gene76634:CDS |
| AATCATGAGAATTTCGGTAA+AGG | 0.479835 | 5.1:-31777265 | MS.gene76634:CDS |
| TGGCTTTATTACACCGGATA+CGG | 0.481215 | 5.1:-31777352 | MS.gene76634:CDS |
| AGATGGTACATGTGGTATCA+TGG | 0.481590 | 5.1:-31777595 | None:intergenic |
| TGGATAATGAAGAAAATGAA+TGG | 0.485792 | 5.1:-31776718 | MS.gene76634:CDS |
| ACCTGATGGGTTGATGGAAT+GGG | 0.486307 | 5.1:-31776828 | MS.gene76634:CDS |
| ACCCATTCCATCAACCCATC+AGG | 0.491138 | 5.1:+31776827 | None:intergenic |
| GCAAAATCAAGTTCTGATGT+TGG | 0.491582 | 5.1:-31777487 | MS.gene76634:CDS |
| TGGTATCATGGAAGACCAAA+AGG | 0.493308 | 5.1:-31777583 | MS.gene76634:CDS |
| TATGAAGGTGTAGGTAGTAA+TGG | 0.495516 | 5.1:-31776878 | MS.gene76634:CDS |
| AGTAATGGAAGGAGGTGTAT+TGG | 0.496955 | 5.1:-31776863 | MS.gene76634:CDS |
| GCCATCAGATGAAGGTTGTT+GGG | 0.501942 | 5.1:-31776777 | MS.gene76634:CDS |
| TATAGAGGTGTTGGTAATGG+AGG | 0.508860 | 5.1:-31776686 | MS.gene76634:CDS |
| GTTGGTAATGGAGGTAGAGT+TGG | 0.510018 | 5.1:-31776677 | MS.gene76634:CDS |
| TACAGATTCAGAACCGTATC+CGG | 0.510816 | 5.1:+31777339 | None:intergenic |
| TGCCATCAGATGAAGGTTGT+TGG | 0.510863 | 5.1:-31776778 | MS.gene76634:CDS |
| GTGTTGCAGTTTCACCTGAT+GGG | 0.513696 | 5.1:-31776841 | MS.gene76634:CDS |
| TGAAATTGGGGAAAATAATG+GGG | 0.515031 | 5.1:-31776988 | MS.gene76634:CDS |
| GAATTAGGTGGGTGAAATTG+GGG | 0.519984 | 5.1:-31777000 | MS.gene76634:CDS |
| TGTTGGTAAAGAGAAAGATT+GGG | 0.521551 | 5.1:-31777146 | MS.gene76634:CDS |
| GAATGGAGATTGTATTATAG+AGG | 0.527631 | 5.1:-31776701 | MS.gene76634:CDS |
| TGTTGGGATGATAAAGATGT+TGG | 0.531854 | 5.1:-31776761 | MS.gene76634:CDS |
| GTTCATTGGGAACGTGGTGG+AGG | 0.533475 | 5.1:-31777514 | MS.gene76634:CDS |
| GAAATTGGGGAAAATAATGG+GGG | 0.534807 | 5.1:-31776987 | MS.gene76634:CDS |
| AGATTGTATTATAGAGGTGT+TGG | 0.538098 | 5.1:-31776695 | MS.gene76634:CDS |
| AAGGTGTAGGTAGTAATGGA+AGG | 0.540807 | 5.1:-31776874 | MS.gene76634:CDS |
| GTTTATTGGCTTTATTACAC+CGG | 0.549416 | 5.1:-31777358 | MS.gene76634:CDS |
| TTTCCATGATAAACAACTTG+TGG | 0.555954 | 5.1:+31777103 | None:intergenic |
| CACCGTTGCTCGAAATTGCT+AGG | 0.574683 | 5.1:+31777536 | None:intergenic |
| AATTATGTGATGGTTTATGA+AGG | 0.575057 | 5.1:-31776893 | MS.gene76634:CDS |
| ATTGAAGGAGAGCATCATAG+TGG | 0.576815 | 5.1:-31777181 | MS.gene76634:CDS |
| AGTGGAGCATTAATAGATGT+TGG | 0.577502 | 5.1:-31777163 | MS.gene76634:CDS |
| GGCCTAGCAATTTCGAGCAA+CGG | 0.579718 | 5.1:-31777538 | MS.gene76634:CDS |
| TCCCAACAACCTTCATCTGA+TGG | 0.581058 | 5.1:+31776776 | None:intergenic |
| ATGGGTTAGGCTTCAAGATG+AGG | 0.586508 | 5.1:-31776810 | MS.gene76634:CDS |
| GAATTGTGGTAAAGATTGGT+GGG | 0.587304 | 5.1:-31777455 | MS.gene76634:CDS |
| ATTGGAATGGCTGTTTCTGA+AGG | 0.593329 | 5.1:-31776653 | MS.gene76634:CDS |
| TGATGAATGCTTGTGTTACA+AGG | 0.593526 | 5.1:-31776931 | MS.gene76634:CDS |
| AATGGCTGTTTCTGAAGGGA+AGG | 0.594338 | 5.1:-31776648 | MS.gene76634:CDS |
| ATATTGATGCCATCAGATGA+AGG | 0.595431 | 5.1:-31776785 | MS.gene76634:CDS |
| GGTTTAGCTATAAGTCAAGA+TGG | 0.596358 | 5.1:-31777220 | MS.gene76634:CDS |
| AAGATTATGAAGTCATTACC+TGG | 0.597381 | 5.1:-31777241 | MS.gene76634:CDS |
| GTTAATCATGTCTAGTTACA+GGG | 0.597820 | 5.1:-31777398 | MS.gene76634:CDS |
| GTCAAGAGATGGAATTAGGT+GGG | 0.602363 | 5.1:-31777011 | MS.gene76634:CDS |
| TGAATTGTGGTAAAGATTGG+TGG | 0.605208 | 5.1:-31777456 | MS.gene76634:CDS |
| AATTGTGGTAAAGATTGGTG+GGG | 0.605226 | 5.1:-31777454 | MS.gene76634:CDS |
| TTGGAATGGCTGTTTCTGAA+GGG | 0.605892 | 5.1:-31776652 | MS.gene76634:CDS |
| AACGGTGTTCATTGGGAACG+TGG | 0.613207 | 5.1:-31777520 | MS.gene76634:CDS |
| GGTATTGCTAGGTCAAGAGA+TGG | 0.619076 | 5.1:-31777022 | MS.gene76634:CDS |
| GGTCAAGAGATGGAATTAGG+TGG | 0.619975 | 5.1:-31777012 | MS.gene76634:CDS |
| GTGTAGGTAGTAATGGAAGG+AGG | 0.620543 | 5.1:-31776871 | MS.gene76634:CDS |
| ATGATAAACAACTTGTGGTG+AGG | 0.624905 | 5.1:+31777108 | None:intergenic |
| GACATGATTAACAATCCTGA+AGG | 0.641600 | 5.1:+31777409 | None:intergenic |
| AAATTGGGGAAAATAATGGG+GGG | 0.644713 | 5.1:-31776986 | MS.gene76634:CDS |
| TTATCCATATAAACAAAACA+AGG | 0.648044 | 5.1:+31776734 | None:intergenic |
| GTGATGGTTTATGAAGGTGT+AGG | 0.651498 | 5.1:-31776887 | MS.gene76634:CDS |
| AGGTAGAGTTGGAATTGGAA+TGG | 0.658663 | 5.1:-31776666 | MS.gene76634:CDS |
| TGGTGGGGTTTCGATACTCG+CGG | 0.668074 | 5.1:-31777439 | MS.gene76634:CDS |
| GGTGTTCATTGGGAACGTGG+TGG | 0.681503 | 5.1:-31777517 | MS.gene76634:CDS |
| GTTACAAGGAACAAGAGTGG+TGG | 0.688481 | 5.1:-31776917 | MS.gene76634:CDS |
| GAGTGGTGGAAATTATGTGA+TGG | 0.693520 | 5.1:-31776903 | MS.gene76634:CDS |
| TCTTGACTTATAGCTAAACC+AGG | 0.700657 | 5.1:+31777223 | None:intergenic |
| TGTGTTACAAGGAACAAGAG+TGG | 0.758187 | 5.1:-31776920 | MS.gene76634:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACCTTCAAATGATTTAAT+AGG | - | chr5.1:31776634-31776653 | MS.gene76634:CDS | 20.0% |
| !! | GTATTATCATTCATTTGATA+AGG | - | chr5.1:31777128-31777147 | MS.gene76634:CDS | 20.0% |
| !! | TTATCCATATAAACAAAACA+AGG | + | chr5.1:31777462-31777481 | None:intergenic | 20.0% |
| !!! | ATATTAGAAGTTTTAGAAGA+TGG | - | chr5.1:31777568-31777587 | MS.gene76634:CDS | 20.0% |
| ! | AATTATGTGATGGTTTATGA+AGG | - | chr5.1:31777300-31777319 | MS.gene76634:CDS | 25.0% |
| ! | CATTCATTTGATAAGGAAAA+AGG | - | chr5.1:31777135-31777154 | MS.gene76634:CDS | 25.0% |
| ! | GGTTTAAATCATGAGAATTT+CGG | - | chr5.1:31776922-31776941 | MS.gene76634:CDS | 25.0% |
| ! | TCTCATGATTTAAACCATTT+GGG | + | chr5.1:31776918-31776937 | None:intergenic | 25.0% |
| ! | TGGATAATGAAGAAAATGAA+TGG | - | chr5.1:31777475-31777494 | MS.gene76634:CDS | 25.0% |
| ! | TTCTCATGATTTAAACCATT+TGG | + | chr5.1:31776919-31776938 | None:intergenic | 25.0% |
| !!! | TTCACCTTGTTTTGTTTATA+TGG | - | chr5.1:31777455-31777474 | MS.gene76634:CDS | 25.0% |
| !!! | TTTAGTTTTGATAACCCAAA+TGG | - | chr5.1:31776901-31776920 | MS.gene76634:CDS | 25.0% |
| AAGATTATGAAGTCATTACC+TGG | - | chr5.1:31776952-31776971 | MS.gene76634:CDS | 30.0% | |
| AAGTCAAGATGGTAGAAATT+GGG | - | chr5.1:31776984-31777003 | MS.gene76634:CDS | 30.0% | |
| AATCATGAGAATTTCGGTAA+AGG | - | chr5.1:31776928-31776947 | MS.gene76634:CDS | 30.0% | |
| AGGCCTATTAAATCATTTGA+AGG | + | chr5.1:31776640-31776659 | None:intergenic | 30.0% | |
| ATCATGGAAATGGTGATTTA+AGG | - | chr5.1:31777103-31777122 | MS.gene76634:CDS | 30.0% | |
| CAAGTTGTTTATCATGGAAA+TGG | - | chr5.1:31777093-31777112 | MS.gene76634:CDS | 30.0% | |
| GAATGGAGATTGTATTATAG+AGG | - | chr5.1:31777492-31777511 | MS.gene76634:CDS | 30.0% | |
| GTGAAATTGGGGAAAATAAT+GGG | - | chr5.1:31777204-31777223 | MS.gene76634:CDS | 30.0% | |
| GTTAATCATGTCTAGTTACA+GGG | - | chr5.1:31776795-31776814 | MS.gene76634:CDS | 30.0% | |
| TAAGTCAAGATGGTAGAAAT+TGG | - | chr5.1:31776983-31777002 | MS.gene76634:CDS | 30.0% | |
| TGAAATTGGGGAAAATAATG+GGG | - | chr5.1:31777205-31777224 | MS.gene76634:CDS | 30.0% | |
| TGATGAATTGTGGTAAAGAT+TGG | - | chr5.1:31776734-31776753 | MS.gene76634:CDS | 30.0% | |
| TGTTAATCATGTCTAGTTAC+AGG | - | chr5.1:31776794-31776813 | MS.gene76634:CDS | 30.0% | |
| TTTCCATGATAAACAACTTG+TGG | + | chr5.1:31777093-31777112 | None:intergenic | 30.0% | |
| ! | AGATTGTATTATAGAGGTGT+TGG | - | chr5.1:31777498-31777517 | MS.gene76634:CDS | 30.0% |
| ! | ATGTTGGTAAAGAGAAAGAT+TGG | - | chr5.1:31777046-31777065 | MS.gene76634:CDS | 30.0% |
| ! | TCATTTGAAGGTTTTCCTTT+TGG | + | chr5.1:31776628-31776647 | None:intergenic | 30.0% |
| ! | TGTTGGTAAAGAGAAAGATT+GGG | - | chr5.1:31777047-31777066 | MS.gene76634:CDS | 30.0% |
| !! | GTTTATTGGCTTTATTACAC+CGG | - | chr5.1:31776835-31776854 | MS.gene76634:CDS | 30.0% |
| !! | TATTATAGAGGTGTTGGTAA+TGG | - | chr5.1:31777504-31777523 | MS.gene76634:CDS | 30.0% |
| AATTGTGGTAAAGATTGGTG+GGG | - | chr5.1:31776739-31776758 | MS.gene76634:CDS | 35.0% | |
| ATATTGATGCCATCAGATGA+AGG | - | chr5.1:31777408-31777427 | MS.gene76634:CDS | 35.0% | |
| ATGATAAACAACTTGTGGTG+AGG | + | chr5.1:31777088-31777107 | None:intergenic | 35.0% | |
| GAAATTGGGGAAAATAATGG+GGG | - | chr5.1:31777206-31777225 | MS.gene76634:CDS | 35.0% | |
| GAATTGTGGTAAAGATTGGT+GGG | - | chr5.1:31776738-31776757 | MS.gene76634:CDS | 35.0% | |
| GACATGATTAACAATCCTGA+AGG | + | chr5.1:31776787-31776806 | None:intergenic | 35.0% | |
| GGTGAAATTGGGGAAAATAA+TGG | - | chr5.1:31777203-31777222 | MS.gene76634:CDS | 35.0% | |
| GGTTTAGCTATAAGTCAAGA+TGG | - | chr5.1:31776973-31776992 | MS.gene76634:CDS | 35.0% | |
| TCACCACAAGTTGTTTATCA+TGG | - | chr5.1:31777087-31777106 | MS.gene76634:CDS | 35.0% | |
| TCTTGACTTATAGCTAAACC+AGG | + | chr5.1:31776973-31776992 | None:intergenic | 35.0% | |
| TGAATTGTGGTAAAGATTGG+TGG | - | chr5.1:31776737-31776756 | MS.gene76634:CDS | 35.0% | |
| TGATGAATGCTTGTGTTACA+AGG | - | chr5.1:31777262-31777281 | MS.gene76634:CDS | 35.0% | |
| TGTTGGGATGATAAAGATGT+TGG | - | chr5.1:31777432-31777451 | MS.gene76634:CDS | 35.0% | |
| ! | AAATTGGGGAAAATAATGGG+GGG | - | chr5.1:31777207-31777226 | MS.gene76634:CDS | 35.0% |
| ! | ACATCAGAACTTGATTTTGC+AGG | + | chr5.1:31776706-31776725 | None:intergenic | 35.0% |
| ! | AGAAATTGGGCTAGAATTGA+AGG | - | chr5.1:31776997-31777016 | MS.gene76634:CDS | 35.0% |
| ! | AGTGGAGCATTAATAGATGT+TGG | - | chr5.1:31777030-31777049 | MS.gene76634:CDS | 35.0% |
| ! | GAAAAAGGAGAGTTTTGCAT+TGG | - | chr5.1:31777150-31777169 | MS.gene76634:CDS | 35.0% |
| ! | GAGGTTCTAATGCTGTTTAT+TGG | - | chr5.1:31776821-31776840 | MS.gene76634:CDS | 35.0% |
| ! | GCAAAATCAAGTTCTGATGT+TGG | - | chr5.1:31776706-31776725 | MS.gene76634:CDS | 35.0% |
| ! | TATGAAGGTGTAGGTAGTAA+TGG | - | chr5.1:31777315-31777334 | MS.gene76634:CDS | 35.0% |
| !! | AGTTTTGCATTGGTATTGCT+AGG | - | chr5.1:31777160-31777179 | MS.gene76634:CDS | 35.0% |
| !! | GTTGGTTCTTTTGATGAGTT+AGG | - | chr5.1:31777237-31777256 | MS.gene76634:CDS | 35.0% |
| !!! | AGAAGTTTTAGAAGATGGAC+TGG | - | chr5.1:31777573-31777592 | MS.gene76634:CDS | 35.0% |
| !!! | GTTGGTTTTGTGATGAATTG+TGG | - | chr5.1:31776724-31776743 | MS.gene76634:CDS | 35.0% |
| AATGGAGGTAGAGTTGGAAT+TGG | - | chr5.1:31777522-31777541 | MS.gene76634:CDS | 40.0% | |
| AGGTAGAGTTGGAATTGGAA+TGG | - | chr5.1:31777527-31777546 | MS.gene76634:CDS | 40.0% | |
| ATGTCTAGTTACAGGGTTAG+AGG | - | chr5.1:31776802-31776821 | MS.gene76634:CDS | 40.0% | |
| CTAGGTCAAGAGATGGAATT+AGG | - | chr5.1:31777178-31777197 | MS.gene76634:CDS | 40.0% | |
| GAATTAGGTGGGTGAAATTG+GGG | - | chr5.1:31777193-31777212 | MS.gene76634:CDS | 40.0% | |
| GGAATTAGGTGGGTGAAATT+GGG | - | chr5.1:31777192-31777211 | MS.gene76634:CDS | 40.0% | |
| GTCAAGAGATGGAATTAGGT+GGG | - | chr5.1:31777182-31777201 | MS.gene76634:CDS | 40.0% | |
| TACAGATTCAGAACCGTATC+CGG | + | chr5.1:31776857-31776876 | None:intergenic | 40.0% | |
| TGGAATTAGGTGGGTGAAAT+TGG | - | chr5.1:31777191-31777210 | MS.gene76634:CDS | 40.0% | |
| TGGTATCATGGAAGACCAAA+AGG | - | chr5.1:31776610-31776629 | MS.gene76634:CDS | 40.0% | |
| TGTGTTACAAGGAACAAGAG+TGG | - | chr5.1:31777273-31777292 | MS.gene76634:CDS | 40.0% | |
| ! | AAGGTGTAGGTAGTAATGGA+AGG | - | chr5.1:31777319-31777338 | MS.gene76634:CDS | 40.0% |
| ! | AGTAATGGAAGGAGGTGTAT+TGG | - | chr5.1:31777330-31777349 | MS.gene76634:CDS | 40.0% |
| ! | GAGTGGTGGAAATTATGTGA+TGG | - | chr5.1:31777290-31777309 | MS.gene76634:CDS | 40.0% |
| ! | GTGATGGTTTATGAAGGTGT+AGG | - | chr5.1:31777306-31777325 | MS.gene76634:CDS | 40.0% |
| !! | ATTGAAGGAGAGCATCATAG+TGG | - | chr5.1:31777012-31777031 | MS.gene76634:CDS | 40.0% |
| !! | ATTGGAATGGCTGTTTCTGA+AGG | - | chr5.1:31777540-31777559 | MS.gene76634:CDS | 40.0% |
| !! | TATAGAGGTGTTGGTAATGG+AGG | - | chr5.1:31777507-31777526 | MS.gene76634:CDS | 40.0% |
| !! | TGGCTTTATTACACCGGATA+CGG | - | chr5.1:31776841-31776860 | MS.gene76634:CDS | 40.0% |
| !! | TTGGAATGGCTGTTTCTGAA+GGG | - | chr5.1:31777541-31777560 | MS.gene76634:CDS | 40.0% |
| GCCATCAGATGAAGGTTGTT+GGG | - | chr5.1:31777416-31777435 | MS.gene76634:CDS | 45.0% | |
| GGTATTGCTAGGTCAAGAGA+TGG | - | chr5.1:31777171-31777190 | MS.gene76634:CDS | 45.0% | |
| GGTCAAGAGATGGAATTAGG+TGG | - | chr5.1:31777181-31777200 | MS.gene76634:CDS | 45.0% | |
| GTGTTGCAGTTTCACCTGAT+GGG | - | chr5.1:31777352-31777371 | MS.gene76634:CDS | 45.0% | |
| GTTACAAGGAACAAGAGTGG+TGG | - | chr5.1:31777276-31777295 | MS.gene76634:CDS | 45.0% | |
| GTTTCGATACTCGCGGAATT+AGG | - | chr5.1:31776761-31776780 | MS.gene76634:CDS | 45.0% | |
| TCCCAACAACCTTCATCTGA+TGG | + | chr5.1:31777420-31777439 | None:intergenic | 45.0% | |
| TGCCATCAGATGAAGGTTGT+TGG | - | chr5.1:31777415-31777434 | MS.gene76634:CDS | 45.0% | |
| TTCGAGCAACGGTGTTCATT+GGG | - | chr5.1:31776666-31776685 | MS.gene76634:CDS | 45.0% | |
| TTTCGAGCAACGGTGTTCAT+TGG | - | chr5.1:31776665-31776684 | MS.gene76634:CDS | 45.0% | |
| ! | ATAATGGGGGGAGGTAAAGT+TGG | - | chr5.1:31777219-31777238 | MS.gene76634:CDS | 45.0% |
| ! | GTGTAGGTAGTAATGGAAGG+AGG | - | chr5.1:31777322-31777341 | MS.gene76634:CDS | 45.0% |
| !! | AATGGCTGTTTCTGAAGGGA+AGG | - | chr5.1:31777545-31777564 | MS.gene76634:CDS | 45.0% |
| !! | ACCTGATGGGTTGATGGAAT+GGG | - | chr5.1:31777365-31777384 | MS.gene76634:CDS | 45.0% |
| !! | AGTTTCACCTGATGGGTTGA+TGG | - | chr5.1:31777359-31777378 | MS.gene76634:CDS | 45.0% |
| !! | ATGGGTTAGGCTTCAAGATG+AGG | - | chr5.1:31777383-31777402 | MS.gene76634:CDS | 45.0% |
| !! | ATGGGTTGATGGAATGGGTT+AGG | - | chr5.1:31777370-31777389 | MS.gene76634:CDS | 45.0% |
| !! | GTTGGTAATGGAGGTAGAGT+TGG | - | chr5.1:31777516-31777535 | MS.gene76634:CDS | 45.0% |
| AACGGTGTTCATTGGGAACG+TGG | - | chr5.1:31776673-31776692 | MS.gene76634:CDS | 50.0% | |
| ACCCATTCCATCAACCCATC+AGG | + | chr5.1:31777369-31777388 | None:intergenic | 50.0% | |
| CACCGTTGCTCGAAATTGCT+AGG | + | chr5.1:31776660-31776679 | None:intergenic | 50.0% | |
| GGCCTAGCAATTTCGAGCAA+CGG | - | chr5.1:31776655-31776674 | MS.gene76634:CDS | 50.0% | |
| ! | GGTGTTGCAGTTTCACCTGA+TGG | - | chr5.1:31777351-31777370 | MS.gene76634:CDS | 50.0% |
| ! | TTGGGGAAAATAATGGGGGG+AGG | - | chr5.1:31777210-31777229 | MS.gene76634:CDS | 50.0% |
| !! | CACCTGATGGGTTGATGGAA+TGG | - | chr5.1:31777364-31777383 | MS.gene76634:CDS | 50.0% |
| ACTCGCGGAATTAGGCCTTC+AGG | - | chr5.1:31776769-31776788 | MS.gene76634:CDS | 55.0% | |
| GGTGTTCATTGGGAACGTGG+TGG | - | chr5.1:31776676-31776695 | MS.gene76634:CDS | 55.0% | |
| GTTCATTGGGAACGTGGTGG+AGG | - | chr5.1:31776679-31776698 | MS.gene76634:CDS | 55.0% | |
| TGGTGGGGTTTCGATACTCG+CGG | - | chr5.1:31776754-31776773 | MS.gene76634:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 31776607 | 31777608 | 31776607 | ID=MS.gene76634 |
| chr5.1 | mRNA | 31776607 | 31777608 | 31776607 | ID=MS.gene76634.t1;Parent=MS.gene76634 |
| chr5.1 | exon | 31776607 | 31777608 | 31776607 | ID=MS.gene76634.t1.exon1;Parent=MS.gene76634.t1 |
| chr5.1 | CDS | 31776607 | 31777608 | 31776607 | ID=cds.MS.gene76634.t1;Parent=MS.gene76634.t1 |
| Gene Sequence |
| Protein sequence |
