Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78314.t1 | XP_024627299.1 | 98.8 | 172 | 2 | 0 | 1 | 172 | 1 | 172 | 2.00E-91 | 345.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78314.t1 | Q32L78 | 49.2 | 132 | 49 | 1 | 36 | 167 | 35 | 148 | 7.0e-29 | 128.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78314.t1 | A2Q3F3 | 98.8 | 172 | 2 | 0 | 1 | 172 | 1 | 172 | 1.4e-91 | 345.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene78314 | 0.80442 | 2.18E-49 | -1.69E-46 |
| MS.gene049166 | MS.gene78314 | 0.804278 | 2.33E-49 | -1.69E-46 |
| MS.gene049208 | MS.gene78314 | 0.823373 | 1.43E-53 | -1.69E-46 |
| MS.gene049674 | MS.gene78314 | 0.821387 | 4.15E-53 | -1.69E-46 |
| MS.gene049756 | MS.gene78314 | 0.824497 | 7.82E-54 | -1.69E-46 |
| MS.gene04984 | MS.gene78314 | 0.803063 | 4.17E-49 | -1.69E-46 |
| MS.gene049887 | MS.gene78314 | 0.823933 | 1.06E-53 | -1.69E-46 |
| MS.gene050085 | MS.gene78314 | 0.814161 | 1.77E-51 | -1.69E-46 |
| MS.gene050114 | MS.gene78314 | 0.816427 | 5.56E-52 | -1.69E-46 |
| MS.gene050277 | MS.gene78314 | 0.818537 | 1.86E-52 | -1.69E-46 |
| MS.gene050288 | MS.gene78314 | 0.827306 | 1.68E-54 | -1.69E-46 |
| MS.gene050317 | MS.gene78314 | 0.839832 | 1.25E-57 | -1.69E-46 |
| MS.gene050320 | MS.gene78314 | 0.805496 | 1.30E-49 | -1.69E-46 |
| MS.gene050437 | MS.gene78314 | 0.814974 | 1.17E-51 | -1.69E-46 |
| MS.gene050752 | MS.gene78314 | 0.839437 | 1.59E-57 | -1.69E-46 |
| MS.gene050838 | MS.gene78314 | 0.842985 | 1.85E-58 | -1.69E-46 |
| MS.gene050955 | MS.gene78314 | 0.816288 | 5.97E-52 | -1.69E-46 |
| MS.gene051003 | MS.gene78314 | 0.844176 | 8.89E-59 | -1.69E-46 |
| MS.gene051234 | MS.gene78314 | 0.809533 | 1.81E-50 | -1.69E-46 |
| MS.gene051245 | MS.gene78314 | 0.814736 | 1.32E-51 | -1.69E-46 |
| MS.gene051343 | MS.gene78314 | 0.87504 | 4.21E-68 | -1.69E-46 |
| MS.gene051676 | MS.gene78314 | 0.809127 | 2.21E-50 | -1.69E-46 |
| MS.gene051748 | MS.gene78314 | 0.824665 | 7.14E-54 | -1.69E-46 |
| MS.gene051756 | MS.gene78314 | 0.836156 | 1.10E-56 | -1.69E-46 |
| MS.gene051757 | MS.gene78314 | 0.808931 | 2.43E-50 | -1.69E-46 |
| MS.gene05188 | MS.gene78314 | 0.802337 | 5.89E-49 | -1.69E-46 |
| MS.gene051903 | MS.gene78314 | 0.824991 | 5.98E-54 | -1.69E-46 |
| MS.gene051975 | MS.gene78314 | 0.825466 | 4.62E-54 | -1.69E-46 |
| MS.gene052072 | MS.gene78314 | 0.816049 | 6.76E-52 | -1.69E-46 |
| MS.gene052242 | MS.gene78314 | -0.817353 | 3.45E-52 | -1.69E-46 |
| MS.gene052335 | MS.gene78314 | 0.801065 | 1.07E-48 | -1.69E-46 |
| MS.gene052370 | MS.gene78314 | 0.805014 | 1.64E-49 | -1.69E-46 |
| MS.gene052947 | MS.gene78314 | 0.816929 | 4.29E-52 | -1.69E-46 |
| MS.gene053058 | MS.gene78314 | 0.82274 | 2.01E-53 | -1.69E-46 |
| MS.gene053109 | MS.gene78314 | 0.817597 | 3.04E-52 | -1.69E-46 |
| MS.gene053564 | MS.gene78314 | 0.807303 | 5.40E-50 | -1.69E-46 |
| MS.gene053952 | MS.gene78314 | 0.804315 | 2.29E-49 | -1.69E-46 |
| MS.gene054403 | MS.gene78314 | 0.835906 | 1.28E-56 | -1.69E-46 |
| MS.gene05469 | MS.gene78314 | 0.806574 | 7.70E-50 | -1.69E-46 |
| MS.gene055311 | MS.gene78314 | 0.852629 | 4.07E-61 | -1.69E-46 |
| MS.gene055313 | MS.gene78314 | 0.832977 | 6.95E-56 | -1.69E-46 |
| MS.gene055314 | MS.gene78314 | 0.840332 | 9.27E-58 | -1.69E-46 |
| MS.gene055603 | MS.gene78314 | 0.809558 | 1.78E-50 | -1.69E-46 |
| MS.gene056097 | MS.gene78314 | 0.806545 | 7.81E-50 | -1.69E-46 |
| MS.gene056181 | MS.gene78314 | 0.817632 | 2.98E-52 | -1.69E-46 |
| MS.gene056580 | MS.gene78314 | 0.816227 | 6.17E-52 | -1.69E-46 |
| MS.gene056631 | MS.gene78314 | 0.806461 | 8.13E-50 | -1.69E-46 |
| MS.gene056699 | MS.gene78314 | 0.810528 | 1.10E-50 | -1.69E-46 |
| MS.gene056760 | MS.gene78314 | 0.800085 | 1.70E-48 | -1.69E-46 |
| MS.gene056787 | MS.gene78314 | 0.866456 | 2.81E-65 | -1.69E-46 |
| MS.gene056986 | MS.gene78314 | 0.82737 | 1.62E-54 | -1.69E-46 |
| MS.gene057057 | MS.gene78314 | 0.805348 | 1.39E-49 | -1.69E-46 |
| MS.gene057094 | MS.gene78314 | 0.821477 | 3.96E-53 | -1.69E-46 |
| MS.gene057140 | MS.gene78314 | 0.802521 | 5.39E-49 | -1.69E-46 |
| MS.gene057234 | MS.gene78314 | 0.83653 | 8.86E-57 | -1.69E-46 |
| MS.gene057360 | MS.gene78314 | 0.808568 | 2.91E-50 | -1.69E-46 |
| MS.gene057452 | MS.gene78314 | -0.812918 | 3.33E-51 | -1.69E-46 |
| MS.gene05781 | MS.gene78314 | 0.817895 | 2.60E-52 | -1.69E-46 |
| MS.gene057890 | MS.gene78314 | -0.810149 | 1.33E-50 | -1.69E-46 |
| MS.gene058054 | MS.gene78314 | 0.809656 | 1.70E-50 | -1.69E-46 |
| MS.gene058055 | MS.gene78314 | 0.819388 | 1.19E-52 | -1.69E-46 |
| MS.gene058238 | MS.gene78314 | 0.84264 | 2.29E-58 | -1.69E-46 |
| MS.gene058638 | MS.gene78314 | 0.817545 | 3.12E-52 | -1.69E-46 |
| MS.gene058639 | MS.gene78314 | 0.836549 | 8.77E-57 | -1.69E-46 |
| MS.gene058654 | MS.gene78314 | 0.817331 | 3.49E-52 | -1.69E-46 |
| MS.gene058758 | MS.gene78314 | 0.810987 | 8.77E-51 | -1.69E-46 |
| MS.gene058852 | MS.gene78314 | 0.808598 | 2.86E-50 | -1.69E-46 |
| MS.gene058906 | MS.gene78314 | 0.820896 | 5.38E-53 | -1.69E-46 |
| MS.gene059146 | MS.gene78314 | 0.804053 | 2.60E-49 | -1.69E-46 |
| MS.gene059171 | MS.gene78314 | 0.848164 | 7.30E-60 | -1.69E-46 |
| MS.gene059227 | MS.gene78314 | 0.802552 | 5.31E-49 | -1.69E-46 |
| MS.gene059360 | MS.gene78314 | 0.806702 | 7.23E-50 | -1.69E-46 |
| MS.gene059965 | MS.gene78314 | 0.803877 | 2.83E-49 | -1.69E-46 |
| MS.gene06001 | MS.gene78314 | 0.826982 | 2.01E-54 | -1.69E-46 |
| MS.gene06010 | MS.gene78314 | 0.811537 | 6.66E-51 | -1.69E-46 |
| MS.gene06011 | MS.gene78314 | 0.818621 | 1.78E-52 | -1.69E-46 |
| MS.gene060296 | MS.gene78314 | 0.805133 | 1.55E-49 | -1.69E-46 |
| MS.gene060869 | MS.gene78314 | 0.81028 | 1.25E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78314.t1 | MTR_7g114210 | 97.143 | 175 | 5 | 0 | 1 | 175 | 1 | 175 | 5.13e-128 | 357 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78314.t1 | AT3G05000 | 79.429 | 175 | 33 | 2 | 1 | 175 | 1 | 172 | 2.63e-101 | 289 |
Find 46 sgRNAs with CRISPR-Local
Find 81 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCTCGGTTTGGTGATCATT+TGG | 0.323253 | 7.4:-2945733 | MS.gene78314:CDS |
| GATCGAAGCCATTGGTTATC+AGG | 0.347972 | 7.4:-2946123 | MS.gene78314:CDS |
| ATCCTGCGAGCAGCGAGTTC+AGG | 0.362814 | 7.4:+2946143 | None:intergenic |
| TTCCCATGCGGGATCATTAG+AGG | 0.368149 | 7.4:-2945371 | MS.gene78314:CDS |
| GATATACGATGGAGCGGCCT+CGG | 0.415640 | 7.4:-2945749 | MS.gene78314:CDS |
| TAGAGGAGCTCTTTCCAACT+TGG | 0.425869 | 7.4:-2945354 | MS.gene78314:CDS |
| TGCACCTACGGCTGAAAGTA+AGG | 0.438829 | 7.4:-2945423 | MS.gene78314:CDS |
| CTAGAGTAGTTCATACTCAA+TGG | 0.454113 | 7.4:-2945091 | MS.gene78314:CDS |
| GGCAATTAAGTTCATTTGCA+AGG | 0.458740 | 7.4:-2945709 | MS.gene78314:CDS |
| AGCAGCGAGTTCAGGTTTGT+TGG | 0.468848 | 7.4:+2946151 | None:intergenic |
| GGCTGAAAGTAAGGCAGCAC+AGG | 0.488115 | 7.4:-2945414 | MS.gene78314:CDS |
| ACGATGGAGCGGCCTCGGTT+TGG | 0.496970 | 7.4:-2945744 | MS.gene78314:CDS |
| ATAAATTTCCGTGGCTTGCA+CGG | 0.497008 | 7.4:-2945496 | MS.gene78314:CDS |
| AGAGGAGCTCTTTCCAACTT+GGG | 0.498177 | 7.4:-2945353 | MS.gene78314:CDS |
| TGCATCTTTATTTCCCATGC+GGG | 0.509752 | 7.4:-2945382 | MS.gene78314:CDS |
| TAGAGTAGTTCATACTCAAT+GGG | 0.517531 | 7.4:-2945090 | MS.gene78314:CDS |
| TCCGTGGCTTGCACGGATGT+CGG | 0.520572 | 7.4:-2945489 | MS.gene78314:CDS |
| TCGGTTTGGTGATCATTTGG+AGG | 0.520959 | 7.4:-2945730 | MS.gene78314:CDS |
| ACAACTTGAAAACTAACCAT+AGG | 0.528003 | 7.4:-2945653 | MS.gene78314:CDS |
| AACCTGAACTCGCTGCTCGC+AGG | 0.543806 | 7.4:-2946145 | MS.gene78314:CDS |
| CAACTTGAAAACTAACCATA+GGG | 0.547452 | 7.4:-2945652 | MS.gene78314:intron |
| TGATAATGTTAGTTCAGTTG+AGG | 0.553497 | 7.4:-2945453 | MS.gene78314:CDS |
| TGCACAGGGAATTCCCAAGT+TGG | 0.556321 | 7.4:+2945340 | None:intergenic |
| TGAGGATTATTCTGCACCTA+CGG | 0.558019 | 7.4:-2945435 | MS.gene78314:CDS |
| GCTGCCTTACTTTCAGCCGT+AGG | 0.558260 | 7.4:+2945419 | None:intergenic |
| ACCGACATCCGTGCAAGCCA+CGG | 0.566327 | 7.4:+2945488 | None:intergenic |
| TATGTCTGCAGAAACTGCAC+AGG | 0.568585 | 7.4:+2945325 | None:intergenic |
| TTCAGAGAGTGAAAATGGTG+AGG | 0.569906 | 7.4:-2946244 | None:intergenic |
| GAACTAACATTATCAGTGGA+TGG | 0.571137 | 7.4:+2945461 | None:intergenic |
| TTGCGTTGATAGCTTGATGA+CGG | 0.587460 | 7.4:-2946207 | MS.gene78314:CDS |
| GCTCCTCTAATGATCCCGCA+TGG | 0.591236 | 7.4:+2945368 | None:intergenic |
| CTCCTCTAATGATCCCGCAT+GGG | 0.596153 | 7.4:+2945369 | None:intergenic |
| TGCAAGATAATAAATTTCCG+TGG | 0.603647 | 7.4:-2945505 | MS.gene78314:CDS |
| TCAGAGAGTGAAAATGGTGA+GGG | 0.605160 | 7.4:-2946243 | None:intergenic |
| TCGGTCAACAGCTCTCTGAA+AGG | 0.608978 | 7.4:-2946100 | MS.gene78314:intron |
| GCTCGCAGGATCGAAGCCAT+TGG | 0.613190 | 7.4:-2946131 | MS.gene78314:CDS |
| GGGGATACACACATGCTGGA+AGG | 0.619761 | 7.4:+2945297 | None:intergenic |
| GAAGCCATTGGTTATCAGGT+CGG | 0.622295 | 7.4:-2946119 | MS.gene78314:CDS |
| AACTGAACTAACATTATCAG+TGG | 0.624516 | 7.4:+2945457 | None:intergenic |
| TTGACCGACCTGATAACCAA+TGG | 0.626958 | 7.4:+2946115 | None:intergenic |
| TGTGTAATTCAGATATACGA+TGG | 0.627817 | 7.4:-2945760 | MS.gene78314:intron |
| TGATAGCTTGATGACGGAGA+TGG | 0.641800 | 7.4:-2946201 | MS.gene78314:CDS |
| ATGCATCTTTATTTCCCATG+CGG | 0.650443 | 7.4:-2945383 | MS.gene78314:CDS |
| AATTCAGATATACGATGGAG+CGG | 0.678919 | 7.4:-2945755 | MS.gene78314:intron |
| TCCAAATGATCACCAAACCG+AGG | 0.695841 | 7.4:+2945732 | None:intergenic |
| ATGTCTGCAGAAACTGCACA+GGG | 0.724210 | 7.4:+2945326 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+TGG | - | chr7.4:2945686-2945705 | MS.gene78314:CDS | 0.0% |
| !!! | TTCTTGATATTAATTATTTT+TGG | - | chr7.4:2945292-2945311 | MS.gene78314:intron | 10.0% |
| !!! | TGATATTAATTATTTTTGGT+AGG | - | chr7.4:2945296-2945315 | MS.gene78314:intron | 15.0% |
| !! | TCATGAAATTGTAATCAAAT+TGG | - | chr7.4:2945341-2945360 | MS.gene78314:CDS | 20.0% |
| !!! | TTTTCATTTTTAGTGTTTTC+TGG | - | chr7.4:2946112-2946131 | MS.gene78314:CDS | 20.0% |
| ! | TGTGAATAATTTGATCTGTT+TGG | - | chr7.4:2946163-2946182 | MS.gene78314:CDS | 25.0% |
| ! | TGTTTGGAAATGTTTAAACA+GGG | - | chr7.4:2946179-2946198 | MS.gene78314:CDS | 25.0% |
| !! | ATTTTCTCGAATTACTACAT+AGG | + | chr7.4:2945409-2945428 | None:intergenic | 25.0% |
| !! | CATAGAAGAGAAGATTTTTA+AGG | - | chr7.4:2946074-2946093 | MS.gene78314:intron | 25.0% |
| !!! | TTTTTGTGTTTTGATTTCCA+TGG | - | chr7.4:2945729-2945748 | MS.gene78314:CDS | 25.0% |
| AACTGAACTAACATTATCAG+TGG | + | chr7.4:2945840-2945859 | None:intergenic | 30.0% | |
| ACAACTTGAAAACTAACCAT+AGG | - | chr7.4:2945641-2945660 | MS.gene78314:intron | 30.0% | |
| AGATGAAGAAAGAGAGAATT+AGG | + | chr7.4:2945235-2945254 | None:intergenic | 30.0% | |
| CAACTTGAAAACTAACCATA+GGG | - | chr7.4:2945642-2945661 | MS.gene78314:intron | 30.0% | |
| CTGTTTGGAAATGTTTAAAC+AGG | - | chr7.4:2946178-2946197 | MS.gene78314:CDS | 30.0% | |
| GATGAAGAAAGAGAGAATTA+GGG | + | chr7.4:2945234-2945253 | None:intergenic | 30.0% | |
| TAGAGTAGTTCATACTCAAT+GGG | - | chr7.4:2946204-2946223 | MS.gene78314:CDS | 30.0% | |
| TGCAAGATAATAAATTTCCG+TGG | - | chr7.4:2945789-2945808 | MS.gene78314:intron | 30.0% | |
| TGTGTAATTCAGATATACGA+TGG | - | chr7.4:2945534-2945553 | MS.gene78314:intron | 30.0% | |
| ! | AGTTCATTTGCAAGGATTTT+TGG | - | chr7.4:2945593-2945612 | MS.gene78314:intron | 30.0% |
| ! | ATTTCCATGGTTGTGTTATT+TGG | - | chr7.4:2945742-2945761 | MS.gene78314:CDS | 30.0% |
| ! | TGATAATGTTAGTTCAGTTG+AGG | - | chr7.4:2945841-2945860 | MS.gene78314:intron | 30.0% |
| AATTCAGATATACGATGGAG+CGG | - | chr7.4:2945539-2945558 | MS.gene78314:intron | 35.0% | |
| AGAACCAAATAACACAACCA+TGG | + | chr7.4:2945749-2945768 | None:intergenic | 35.0% | |
| CTAGAGTAGTTCATACTCAA+TGG | - | chr7.4:2946203-2946222 | MS.gene78314:CDS | 35.0% | |
| CTGTTATCACACAACATAGT+AGG | - | chr7.4:2945259-2945278 | MS.gene78314:intron | 35.0% | |
| GAACTAACATTATCAGTGGA+TGG | + | chr7.4:2945836-2945855 | None:intergenic | 35.0% | |
| GGCAATTAAGTTCATTTGCA+AGG | - | chr7.4:2945585-2945604 | MS.gene78314:intron | 35.0% | |
| ! | ATGCATCTTTATTTCCCATG+CGG | - | chr7.4:2945911-2945930 | MS.gene78314:intron | 35.0% |
| AACCAATTCAACTCACCCTA+TGG | + | chr7.4:2945660-2945679 | None:intergenic | 40.0% | |
| GAATGTAGTCACATGTGTCA+GGG | - | chr7.4:2945438-2945457 | MS.gene78314:CDS | 40.0% | |
| TGAATGTAGTCACATGTGTC+AGG | - | chr7.4:2945437-2945456 | MS.gene78314:CDS | 40.0% | |
| TGAGGATTATTCTGCACCTA+CGG | - | chr7.4:2945859-2945878 | MS.gene78314:intron | 40.0% | |
| ! | AACCATAGGGTGAGTTGAAT+TGG | - | chr7.4:2945655-2945674 | MS.gene78314:CDS | 40.0% |
| ! | ATAAATTTCCGTGGCTTGCA+CGG | - | chr7.4:2945798-2945817 | MS.gene78314:intron | 40.0% |
| ! | GTCAGATAGGTTATGATGGA+TGG | - | chr7.4:2945460-2945479 | MS.gene78314:CDS | 40.0% |
| ! | TGCATCTTTATTTCCCATGC+GGG | - | chr7.4:2945912-2945931 | MS.gene78314:intron | 40.0% |
| !! | TGTTATTTGGTTCTGCTGCA+GGG | - | chr7.4:2945755-2945774 | MS.gene78314:intron | 40.0% |
| !! | TTGCGTTGATAGCTTGATGA+CGG | - | chr7.4:2945087-2945106 | MS.gene78314:CDS | 40.0% |
| !!! | TTGCAAGGATTTTTGGTCTG+AGG | - | chr7.4:2945600-2945619 | MS.gene78314:intron | 40.0% |
| ACTACATAGGTCGTGCTTCA+TGG | + | chr7.4:2945396-2945415 | None:intergenic | 45.0% | |
| AGAGGAGCTCTTTCCAACTT+GGG | - | chr7.4:2945941-2945960 | MS.gene78314:intron | 45.0% | |
| ATGTCTGCAGAAACTGCACA+GGG | + | chr7.4:2945971-2945990 | None:intergenic | 45.0% | |
| CAGGGTCAGATAGGTTATGA+TGG | - | chr7.4:2945456-2945475 | MS.gene78314:CDS | 45.0% | |
| TAGAGGAGCTCTTTCCAACT+TGG | - | chr7.4:2945940-2945959 | MS.gene78314:intron | 45.0% | |
| TATGTCTGCAGAAACTGCAC+AGG | + | chr7.4:2945972-2945991 | None:intergenic | 45.0% | |
| TCCAAATGATCACCAAACCG+AGG | + | chr7.4:2945565-2945584 | None:intergenic | 45.0% | |
| TTGACCGACCTGATAACCAA+TGG | + | chr7.4:2945182-2945201 | None:intergenic | 45.0% | |
| ! | GAAGCCATTGGTTATCAGGT+CGG | - | chr7.4:2945175-2945194 | MS.gene78314:intron | 45.0% |
| ! | GATCGAAGCCATTGGTTATC+AGG | - | chr7.4:2945171-2945190 | MS.gene78314:intron | 45.0% |
| ! | TCAACAGCTCTCTGAAAGGT+TGG | - | chr7.4:2945198-2945217 | MS.gene78314:intron | 45.0% |
| !! | GTGTTATTTGGTTCTGCTGC+AGG | - | chr7.4:2945754-2945773 | MS.gene78314:intron | 45.0% |
| !! | TCGGTTTGGTGATCATTTGG+AGG | - | chr7.4:2945564-2945583 | MS.gene78314:intron | 45.0% |
| !! | TGATAGCTTGATGACGGAGA+TGG | - | chr7.4:2945093-2945112 | MS.gene78314:CDS | 45.0% |
| AGAGAGAGAGAGAGAGAGAG+AGG | + | chr7.4:2946028-2946047 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGAGGGAGAT+GGG | + | chr7.4:2946022-2946041 | None:intergenic | 50.0% | |
| CACATGTGTCAGGGTCAGAT+AGG | - | chr7.4:2945447-2945466 | MS.gene78314:CDS | 50.0% | |
| CTCCTCTAATGATCCCGCAT+GGG | + | chr7.4:2945928-2945947 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAGAGAGAGA+GGG | + | chr7.4:2946029-2946048 | None:intergenic | 50.0% | |
| TCGGTCAACAGCTCTCTGAA+AGG | - | chr7.4:2945194-2945213 | MS.gene78314:intron | 50.0% | |
| TGCACAGGGAATTCCCAAGT+TGG | + | chr7.4:2945957-2945976 | None:intergenic | 50.0% | |
| TGCACCTACGGCTGAAAGTA+AGG | - | chr7.4:2945871-2945890 | MS.gene78314:intron | 50.0% | |
| TTCCCATGCGGGATCATTAG+AGG | - | chr7.4:2945923-2945942 | MS.gene78314:intron | 50.0% | |
| ! | AGCAGCGAGTTCAGGTTTGT+TGG | + | chr7.4:2945146-2945165 | None:intergenic | 50.0% |
| !! | GCCTCGGTTTGGTGATCATT+TGG | - | chr7.4:2945561-2945580 | MS.gene78314:intron | 50.0% |
| AGAGAGAGAGAGGGAGATGG+GGG | + | chr7.4:2946020-2946039 | None:intergenic | 55.0% | |
| ATGGGGGGATACACACATGC+TGG | + | chr7.4:2946004-2946023 | None:intergenic | 55.0% | |
| GAGAGAGAGAGAGAGGGAGA+TGG | + | chr7.4:2946023-2946042 | None:intergenic | 55.0% | |
| GAGAGAGAGAGAGGGAGATG+GGG | + | chr7.4:2946021-2946040 | None:intergenic | 55.0% | |
| GATATACGATGGAGCGGCCT+CGG | - | chr7.4:2945545-2945564 | MS.gene78314:intron | 55.0% | |
| GCTCCTCTAATGATCCCGCA+TGG | + | chr7.4:2945929-2945948 | None:intergenic | 55.0% | |
| GCTGCCTTACTTTCAGCCGT+AGG | + | chr7.4:2945878-2945897 | None:intergenic | 55.0% | |
| GGCTGAAAGTAAGGCAGCAC+AGG | - | chr7.4:2945880-2945899 | MS.gene78314:intron | 55.0% | |
| GGGGATACACACATGCTGGA+AGG | + | chr7.4:2946000-2946019 | None:intergenic | 55.0% | |
| AACCTGAACTCGCTGCTCGC+AGG | - | chr7.4:2945149-2945168 | MS.gene78314:intron | 60.0% | |
| ACCGACATCCGTGCAAGCCA+CGG | + | chr7.4:2945809-2945828 | None:intergenic | 60.0% | |
| ATCCTGCGAGCAGCGAGTTC+AGG | + | chr7.4:2945154-2945173 | None:intergenic | 60.0% | |
| GAGAGAGAGAGGGAGATGGG+GGG | + | chr7.4:2946019-2946038 | None:intergenic | 60.0% | |
| GCTCGCAGGATCGAAGCCAT+TGG | - | chr7.4:2945163-2945182 | MS.gene78314:intron | 60.0% | |
| ! | TCCGTGGCTTGCACGGATGT+CGG | - | chr7.4:2945805-2945824 | MS.gene78314:intron | 60.0% |
| ACGATGGAGCGGCCTCGGTT+TGG | - | chr7.4:2945550-2945569 | MS.gene78314:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 2945064 | 2946252 | 2945064 | ID=MS.gene78314 |
| chr7.4 | mRNA | 2945064 | 2946252 | 2945064 | ID=MS.gene78314.t1;Parent=MS.gene78314 |
| chr7.4 | exon | 2946101 | 2946252 | 2946101 | ID=MS.gene78314.t1.exon1;Parent=MS.gene78314.t1 |
| chr7.4 | CDS | 2946101 | 2946252 | 2946101 | ID=cds.MS.gene78314.t1;Parent=MS.gene78314.t1 |
| chr7.4 | exon | 2945653 | 2945770 | 2945653 | ID=MS.gene78314.t1.exon2;Parent=MS.gene78314.t1 |
| chr7.4 | CDS | 2945653 | 2945770 | 2945653 | ID=cds.MS.gene78314.t1;Parent=MS.gene78314.t1 |
| chr7.4 | exon | 2945309 | 2945540 | 2945309 | ID=MS.gene78314.t1.exon3;Parent=MS.gene78314.t1 |
| chr7.4 | CDS | 2945309 | 2945540 | 2945309 | ID=cds.MS.gene78314.t1;Parent=MS.gene78314.t1 |
| chr7.4 | exon | 2945064 | 2945116 | 2945064 | ID=MS.gene78314.t1.exon4;Parent=MS.gene78314.t1 |
| chr7.4 | CDS | 2945064 | 2945116 | 2945064 | ID=cds.MS.gene78314.t1;Parent=MS.gene78314.t1 |
| Gene Sequence |
| Protein sequence |
