Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80235.t1 | XP_003603363.1 | 96.2 | 131 | 2 | 2 | 1 | 130 | 1 | 129 | 2.70E-47 | 198 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80235.t1 | Q39176 | 60.9 | 87 | 32 | 2 | 45 | 130 | 83 | 168 | 2.8e-24 | 112.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80235.t1 | G7JAH5 | 96.2 | 131 | 2 | 2 | 1 | 130 | 1 | 129 | 2.0e-47 | 198.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049173 | MS.gene80235 | 0.824064 | 9.88E-54 | -1.69E-46 |
| MS.gene049217 | MS.gene80235 | 0.833324 | 5.69E-56 | -1.69E-46 |
| MS.gene049222 | MS.gene80235 | 0.805605 | 1.23E-49 | -1.69E-46 |
| MS.gene049232 | MS.gene80235 | 0.813478 | 2.51E-51 | -1.69E-46 |
| MS.gene049285 | MS.gene80235 | 0.854933 | 8.84E-62 | -1.69E-46 |
| MS.gene049320 | MS.gene80235 | 0.863652 | 2.14E-64 | -1.69E-46 |
| MS.gene049600 | MS.gene80235 | 0.824367 | 8.39E-54 | -1.69E-46 |
| MS.gene049828 | MS.gene80235 | 0.820891 | 5.40E-53 | -1.69E-46 |
| MS.gene05010 | MS.gene80235 | 0.810176 | 1.31E-50 | -1.69E-46 |
| MS.gene050163 | MS.gene80235 | 0.866763 | 2.25E-65 | -1.69E-46 |
| MS.gene050165 | MS.gene80235 | 0.85069 | 1.44E-60 | -1.69E-46 |
| MS.gene050216 | MS.gene80235 | 0.80964 | 1.71E-50 | -1.69E-46 |
| MS.gene050333 | MS.gene80235 | 0.821743 | 3.43E-53 | -1.69E-46 |
| MS.gene050504 | MS.gene80235 | 0.850689 | 1.44E-60 | -1.69E-46 |
| MS.gene050518 | MS.gene80235 | 0.842102 | 3.17E-58 | -1.69E-46 |
| MS.gene050581 | MS.gene80235 | 0.847172 | 1.37E-59 | -1.69E-46 |
| MS.gene050612 | MS.gene80235 | 0.836949 | 6.93E-57 | -1.69E-46 |
| MS.gene050675 | MS.gene80235 | 0.821635 | 3.64E-53 | -1.69E-46 |
| MS.gene050686 | MS.gene80235 | 0.80805 | 3.75E-50 | -1.69E-46 |
| MS.gene050699 | MS.gene80235 | 0.808788 | 2.61E-50 | -1.69E-46 |
| MS.gene050767 | MS.gene80235 | 0.848949 | 4.42E-60 | -1.69E-46 |
| MS.gene050770 | MS.gene80235 | 0.845987 | 2.88E-59 | -1.69E-46 |
| MS.gene050772 | MS.gene80235 | 0.829454 | 5.10E-55 | -1.69E-46 |
| MS.gene050986 | MS.gene80235 | 0.837627 | 4.65E-57 | -1.69E-46 |
| MS.gene05100 | MS.gene80235 | 0.859814 | 3.19E-63 | -1.69E-46 |
| MS.gene05118 | MS.gene80235 | 0.817057 | 4.02E-52 | -1.69E-46 |
| MS.gene051509 | MS.gene80235 | 0.81194 | 5.44E-51 | -1.69E-46 |
| MS.gene051551 | MS.gene80235 | 0.835306 | 1.81E-56 | -1.69E-46 |
| MS.gene051810 | MS.gene80235 | 0.868668 | 5.50E-66 | -1.69E-46 |
| MS.gene052164 | MS.gene80235 | 0.81898 | 1.48E-52 | -1.69E-46 |
| MS.gene052271 | MS.gene80235 | 0.883531 | 4.15E-71 | -1.69E-46 |
| MS.gene052916 | MS.gene80235 | 0.814393 | 1.58E-51 | -1.69E-46 |
| MS.gene053009 | MS.gene80235 | 0.862672 | 4.29E-64 | -1.69E-46 |
| MS.gene053018 | MS.gene80235 | 0.80777 | 4.30E-50 | -1.69E-46 |
| MS.gene053213 | MS.gene80235 | 0.840727 | 7.31E-58 | -1.69E-46 |
| MS.gene053286 | MS.gene80235 | 0.840111 | 1.06E-57 | -1.69E-46 |
| MS.gene053322 | MS.gene80235 | 0.819383 | 1.20E-52 | -1.69E-46 |
| MS.gene053574 | MS.gene80235 | 0.826857 | 2.15E-54 | -1.69E-46 |
| MS.gene053632 | MS.gene80235 | 0.834169 | 3.50E-56 | -1.69E-46 |
| MS.gene053813 | MS.gene80235 | 0.824059 | 9.91E-54 | -1.69E-46 |
| MS.gene053916 | MS.gene80235 | 0.817373 | 3.41E-52 | -1.69E-46 |
| MS.gene054376 | MS.gene80235 | 0.816605 | 5.07E-52 | -1.69E-46 |
| MS.gene054642 | MS.gene80235 | 0.867141 | 1.70E-65 | -1.69E-46 |
| MS.gene054954 | MS.gene80235 | 0.85464 | 1.08E-61 | -1.69E-46 |
| MS.gene05505 | MS.gene80235 | 0.80436 | 2.24E-49 | -1.69E-46 |
| MS.gene055362 | MS.gene80235 | 0.846637 | 1.92E-59 | -1.69E-46 |
| MS.gene055397 | MS.gene80235 | 0.842897 | 1.95E-58 | -1.69E-46 |
| MS.gene055499 | MS.gene80235 | 0.851359 | 9.34E-61 | -1.69E-46 |
| MS.gene055502 | MS.gene80235 | 0.817594 | 3.04E-52 | -1.69E-46 |
| MS.gene055647 | MS.gene80235 | 0.809383 | 1.94E-50 | -1.69E-46 |
| MS.gene055722 | MS.gene80235 | 0.838425 | 2.90E-57 | -1.69E-46 |
| MS.gene05592 | MS.gene80235 | 0.80656 | 7.75E-50 | -1.69E-46 |
| MS.gene056083 | MS.gene80235 | 0.806647 | 7.43E-50 | -1.69E-46 |
| MS.gene056374 | MS.gene80235 | 0.851146 | 1.07E-60 | -1.69E-46 |
| MS.gene056504 | MS.gene80235 | 0.80147 | 8.87E-49 | -1.69E-46 |
| MS.gene056510 | MS.gene80235 | 0.814151 | 1.78E-51 | -1.69E-46 |
| MS.gene056657 | MS.gene80235 | 0.869591 | 2.76E-66 | -1.69E-46 |
| MS.gene056942 | MS.gene80235 | 0.811613 | 6.41E-51 | -1.69E-46 |
| MS.gene057129 | MS.gene80235 | 0.849787 | 2.58E-60 | -1.69E-46 |
| MS.gene057416 | MS.gene80235 | 0.808562 | 2.91E-50 | -1.69E-46 |
| MS.gene058419 | MS.gene80235 | 0.847388 | 1.19E-59 | -1.69E-46 |
| MS.gene058459 | MS.gene80235 | 0.805857 | 1.09E-49 | -1.69E-46 |
| MS.gene058723 | MS.gene80235 | 0.844096 | 9.34E-59 | -1.69E-46 |
| MS.gene058773 | MS.gene80235 | 0.812915 | 3.33E-51 | -1.69E-46 |
| MS.gene058903 | MS.gene80235 | 0.803553 | 3.30E-49 | -1.69E-46 |
| MS.gene059022 | MS.gene80235 | 0.857452 | 1.62E-62 | -1.69E-46 |
| MS.gene059029 | MS.gene80235 | 0.807241 | 5.57E-50 | -1.69E-46 |
| MS.gene05913 | MS.gene80235 | 0.820128 | 8.08E-53 | -1.69E-46 |
| MS.gene059367 | MS.gene80235 | 0.813258 | 2.80E-51 | -1.69E-46 |
| MS.gene059677 | MS.gene80235 | 0.846256 | 2.43E-59 | -1.69E-46 |
| MS.gene059718 | MS.gene80235 | 0.832388 | 9.73E-56 | -1.69E-46 |
| MS.gene059865 | MS.gene80235 | 0.836732 | 7.88E-57 | -1.69E-46 |
| MS.gene060341 | MS.gene80235 | 0.800604 | 1.33E-48 | -1.69E-46 |
| MS.gene060356 | MS.gene80235 | 0.85256 | 4.26E-61 | -1.69E-46 |
| MS.gene060482 | MS.gene80235 | 0.832271 | 1.04E-55 | -1.69E-46 |
| MS.gene060703 | MS.gene80235 | 0.817566 | 3.09E-52 | -1.69E-46 |
| MS.gene061134 | MS.gene80235 | 0.823108 | 1.65E-53 | -1.69E-46 |
| MS.gene061171 | MS.gene80235 | 0.802206 | 6.26E-49 | -1.69E-46 |
| MS.gene061200 | MS.gene80235 | 0.856976 | 2.23E-62 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80235.t1 | MTR_3g106750 | 95.420 | 131 | 3 | 2 | 1 | 130 | 1 | 129 | 2.33e-63 | 189 |
| MS.gene80235.t1 | MTR_3g106740 | 74.615 | 130 | 31 | 2 | 1 | 129 | 1 | 129 | 2.05e-56 | 172 |
| MS.gene80235.t1 | MTR_1g012690 | 57.325 | 157 | 37 | 4 | 1 | 130 | 1 | 154 | 1.94e-50 | 157 |
| MS.gene80235.t1 | MTR_1g012700 | 56.627 | 166 | 34 | 4 | 1 | 130 | 1 | 164 | 2.16e-49 | 155 |
| MS.gene80235.t1 | MTR_1g012710 | 60.784 | 153 | 35 | 3 | 1 | 130 | 1 | 151 | 1.01e-44 | 143 |
| MS.gene80235.t1 | MTR_1g012630 | 79.762 | 84 | 16 | 1 | 47 | 130 | 128 | 210 | 1.74e-41 | 137 |
| MS.gene80235.t1 | MTR_4g108150 | 50.820 | 122 | 56 | 2 | 9 | 130 | 6 | 123 | 6.67e-33 | 112 |
| MS.gene80235.t1 | MTR_4g101260 | 63.095 | 84 | 30 | 1 | 47 | 130 | 50 | 132 | 4.88e-31 | 107 |
| MS.gene80235.t1 | MTR_4g101330 | 40.588 | 170 | 58 | 6 | 1 | 129 | 1 | 168 | 2.60e-29 | 104 |
| MS.gene80235.t1 | MTR_4g101280 | 56.818 | 88 | 36 | 2 | 44 | 130 | 57 | 143 | 9.70e-29 | 102 |
| MS.gene80235.t1 | MTR_2g026760 | 47.619 | 126 | 61 | 3 | 4 | 129 | 6 | 126 | 1.38e-28 | 101 |
| MS.gene80235.t1 | MTR_4g101310 | 57.647 | 85 | 34 | 2 | 47 | 130 | 51 | 134 | 8.93e-28 | 99.8 |
| MS.gene80235.t1 | MTR_4g101270 | 57.143 | 84 | 33 | 3 | 47 | 129 | 105 | 186 | 1.58e-22 | 87.8 |
| MS.gene80235.t1 | MTR_5g012340 | 47.619 | 84 | 41 | 2 | 47 | 129 | 95 | 176 | 1.70e-22 | 87.4 |
| MS.gene80235.t1 | MTR_5g012380 | 46.429 | 84 | 42 | 2 | 47 | 129 | 88 | 169 | 7.90e-22 | 85.5 |
| MS.gene80235.t1 | MTR_2g026930 | 48.750 | 80 | 38 | 2 | 50 | 129 | 122 | 198 | 1.57e-16 | 72.4 |
| MS.gene80235.t1 | MTR_2g026920 | 48.750 | 80 | 38 | 2 | 50 | 129 | 118 | 194 | 1.70e-16 | 72.4 |
| MS.gene80235.t1 | MTR_3g082100 | 46.512 | 86 | 45 | 1 | 44 | 129 | 251 | 335 | 1.26e-15 | 72.0 |
| MS.gene80235.t1 | MTR_2g026775 | 41.772 | 79 | 40 | 3 | 54 | 130 | 686 | 760 | 6.78e-13 | 64.7 |
| MS.gene80235.t1 | MTR_4g115360 | 48.235 | 85 | 41 | 3 | 47 | 130 | 151 | 233 | 2.63e-11 | 58.9 |
| MS.gene80235.t1 | MTR_2g026820 | 52.778 | 72 | 27 | 4 | 52 | 121 | 542 | 608 | 3.67e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80235.t1 | AT2G45180 | 69.048 | 84 | 25 | 1 | 47 | 130 | 52 | 134 | 4.20e-34 | 115 |
| MS.gene80235.t1 | AT4G12490 | 60.000 | 95 | 36 | 2 | 37 | 130 | 89 | 182 | 5.62e-32 | 112 |
| MS.gene80235.t1 | AT4G12500 | 38.764 | 178 | 60 | 4 | 1 | 130 | 1 | 177 | 1.85e-31 | 110 |
| MS.gene80235.t1 | AT4G12480 | 60.920 | 87 | 32 | 2 | 45 | 130 | 83 | 168 | 5.27e-31 | 108 |
| MS.gene80235.t1 | AT4G12470 | 58.889 | 90 | 35 | 2 | 42 | 130 | 73 | 161 | 8.28e-31 | 108 |
| MS.gene80235.t1 | AT5G46900 | 63.736 | 91 | 29 | 2 | 40 | 130 | 41 | 127 | 3.19e-30 | 105 |
| MS.gene80235.t1 | AT1G62510 | 61.176 | 85 | 31 | 2 | 46 | 129 | 66 | 149 | 1.55e-29 | 104 |
| MS.gene80235.t1 | AT5G46890 | 61.053 | 95 | 33 | 3 | 36 | 130 | 37 | 127 | 1.19e-28 | 101 |
| MS.gene80235.t1 | AT1G12090 | 62.195 | 82 | 29 | 2 | 49 | 129 | 57 | 137 | 1.30e-28 | 102 |
| MS.gene80235.t1 | AT4G12520 | 52.893 | 121 | 53 | 3 | 11 | 130 | 12 | 129 | 4.78e-28 | 100 |
| MS.gene80235.t1 | AT4G12510 | 52.893 | 121 | 53 | 3 | 11 | 130 | 12 | 129 | 4.78e-28 | 100 |
| MS.gene80235.t1 | AT4G12550 | 50.000 | 92 | 44 | 2 | 40 | 130 | 21 | 111 | 4.52e-26 | 94.7 |
| MS.gene80235.t1 | AT4G00165 | 47.664 | 107 | 51 | 3 | 27 | 129 | 23 | 128 | 5.45e-26 | 95.1 |
| MS.gene80235.t1 | AT4G00165 | 47.664 | 107 | 51 | 3 | 27 | 129 | 23 | 128 | 5.45e-26 | 95.1 |
| MS.gene80235.t1 | AT1G12100 | 41.129 | 124 | 70 | 3 | 9 | 130 | 10 | 132 | 8.98e-26 | 94.7 |
| MS.gene80235.t1 | AT4G22460 | 48.571 | 105 | 49 | 2 | 28 | 128 | 28 | 131 | 2.15e-25 | 93.6 |
| MS.gene80235.t1 | AT4G12530 | 50.000 | 86 | 42 | 1 | 44 | 129 | 31 | 115 | 5.32e-23 | 87.0 |
| MS.gene80235.t1 | AT4G12545 | 50.000 | 92 | 41 | 3 | 40 | 130 | 21 | 108 | 6.03e-23 | 86.7 |
| MS.gene80235.t1 | AT3G22142 | 52.381 | 84 | 37 | 3 | 47 | 129 | 1397 | 1478 | 2.04e-20 | 86.3 |
| MS.gene80235.t1 | AT3G22120 | 51.190 | 84 | 39 | 2 | 47 | 129 | 267 | 349 | 5.72e-19 | 81.3 |
| MS.gene80235.t1 | AT3G22120 | 51.190 | 84 | 39 | 2 | 47 | 129 | 250 | 332 | 1.18e-18 | 80.1 |
| MS.gene80235.t1 | AT2G10940 | 47.727 | 88 | 43 | 3 | 44 | 130 | 205 | 290 | 1.24e-18 | 79.7 |
| MS.gene80235.t1 | AT2G10940 | 47.727 | 88 | 43 | 3 | 44 | 130 | 205 | 290 | 1.24e-18 | 79.7 |
| MS.gene80235.t1 | AT4G15160 | 49.412 | 85 | 40 | 3 | 47 | 129 | 99 | 182 | 4.34e-17 | 73.9 |
| MS.gene80235.t1 | AT4G15160 | 49.412 | 85 | 40 | 3 | 47 | 129 | 181 | 264 | 1.11e-16 | 74.3 |
| MS.gene80235.t1 | AT1G62500 | 42.529 | 87 | 47 | 3 | 44 | 129 | 209 | 293 | 6.54e-15 | 69.7 |
| MS.gene80235.t1 | AT4G22490 | 37.634 | 93 | 54 | 3 | 38 | 129 | 27 | 116 | 8.04e-15 | 66.2 |
Find 44 sgRNAs with CRISPR-Local
Find 47 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTAACTTTAAGGTATCTT+TGG | 0.166346 | 3.4:-93008425 | None:intergenic |
| AGCACAAACCCCTAACTTTA+AGG | 0.205248 | 3.4:-93008434 | None:intergenic |
| ATCTTTGGGGCAGTGACCTT+GGG | 0.214560 | 3.4:-93008410 | None:intergenic |
| TTGTCTTTGCACTGCAATTA+AGG | 0.231170 | 3.4:+93008555 | MS.gene80235:CDS |
| AATCAAAGGTTTGGCTGATT+TGG | 0.237754 | 3.4:+93008522 | MS.gene80235:CDS |
| TAAAATGGTGGCAAAGAATT+TGG | 0.290687 | 3.4:-93008296 | None:intergenic |
| CCTAACTTTAAGGTATCTTT+GGG | 0.293316 | 3.4:-93008424 | None:intergenic |
| GAAGGTGTTGGCTTTGGCTT+TGG | 0.296299 | 3.4:-93008385 | None:intergenic |
| TGGGGTGAAGGTGTTGGCTT+TGG | 0.321997 | 3.4:-93008391 | None:intergenic |
| CCCAAAGATACCTTAAAGTT+AGG | 0.331524 | 3.4:+93008424 | MS.gene80235:CDS |
| GTTGGCTTTGGCTTTGGCTT+TGG | 0.335137 | 3.4:-93008379 | None:intergenic |
| TATCTTTGGGGCAGTGACCT+TGG | 0.380498 | 3.4:-93008411 | None:intergenic |
| CCAAAGATACCTTAAAGTTA+GGG | 0.385359 | 3.4:+93008425 | MS.gene80235:CDS |
| AGGATCCAGGTGAGGGTGAT+AGG | 0.388310 | 3.4:-93008607 | None:intergenic |
| GGGCAGTGACCTTGGGGTGA+AGG | 0.389809 | 3.4:-93008403 | None:intergenic |
| AAGGAGAGAGAGTACTAAAA+TGG | 0.390388 | 3.4:-93008311 | None:intergenic |
| ATCACCCTCACCTGGATCCT+TGG | 0.406696 | 3.4:+93008610 | MS.gene80235:CDS |
| GTTGTTGGGAATCCTGCTTC+AGG | 0.413980 | 3.4:+93008481 | MS.gene80235:CDS |
| TTTGGCTTTGGCTTTGGTGA+TGG | 0.416452 | 3.4:-93008373 | None:intergenic |
| CTCAACATTTACTGAGGCTA+AGG | 0.420857 | 3.4:+93008339 | MS.gene80235:CDS |
| TTGACAAGCACCAAGGATCC+AGG | 0.457767 | 3.4:-93008620 | None:intergenic |
| GACTGGTTAATGTTGTTGTT+GGG | 0.463209 | 3.4:+93008467 | MS.gene80235:CDS |
| TTGTGCAATAATCAAAGGTT+TGG | 0.466120 | 3.4:+93008513 | MS.gene80235:CDS |
| GGACTGGTTAATGTTGTTGT+TGG | 0.480624 | 3.4:+93008466 | MS.gene80235:CDS |
| TGACCTTGGGGTGAAGGTGT+TGG | 0.502306 | 3.4:-93008397 | None:intergenic |
| AATTGTTGTGCAATAATCAA+AGG | 0.523157 | 3.4:+93008508 | MS.gene80235:CDS |
| GCAATTAAGGCCAATGTGCT+CGG | 0.533371 | 3.4:+93008568 | MS.gene80235:CDS |
| TCTTTGGGGCAGTGACCTTG+GGG | 0.545751 | 3.4:-93008409 | None:intergenic |
| CCTTAGGCACATTGAAAACC+AGG | 0.555069 | 3.4:-93008655 | None:intergenic |
| CAAAGATACCTTAAAGTTAG+GGG | 0.560461 | 3.4:+93008426 | MS.gene80235:CDS |
| ATGTACCTATCACCCTCACC+TGG | 0.591606 | 3.4:+93008602 | MS.gene80235:CDS |
| CAGTAAATGTTGAGTAAGCA+AGG | 0.592270 | 3.4:-93008330 | None:intergenic |
| TCAACATTTACTGAGGCTAA+GGG | 0.596026 | 3.4:+93008340 | MS.gene80235:CDS |
| CAAGTTTATTCCGAGCACAT+TGG | 0.596849 | 3.4:-93008578 | None:intergenic |
| GGTGGCAAAGAATTTGGTGT+TGG | 0.599992 | 3.4:-93008290 | None:intergenic |
| CAACAATTACTACCTGAAGC+AGG | 0.602543 | 3.4:-93008493 | None:intergenic |
| AGCACCAAGGATCCAGGTGA+GGG | 0.612333 | 3.4:-93008614 | None:intergenic |
| AAGCCAACACCTTCACCCCA+AGG | 0.614009 | 3.4:+93008394 | MS.gene80235:CDS |
| TGCTTACTCAACATTTACTG+AGG | 0.622636 | 3.4:+93008333 | MS.gene80235:CDS |
| GAGAGAGAGTACTAAAATGG+TGG | 0.630559 | 3.4:-93008308 | None:intergenic |
| AAGCACCAAGGATCCAGGTG+AGG | 0.645068 | 3.4:-93008615 | None:intergenic |
| AGGCACATTGAAAACCAGGA+GGG | 0.674973 | 3.4:-93008651 | None:intergenic |
| CTAACTTTAAGGTATCTTTG+GGG | 0.708820 | 3.4:-93008423 | None:intergenic |
| TAGGCACATTGAAAACCAGG+AGG | 0.727521 | 3.4:-93008652 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AATTGTTGTGCAATAATCAA+AGG | + | chr3.4:93008508-93008527 | MS.gene80235:CDS | 25.0% |
| CAAAGATACCTTAAAGTTAG+GGG | + | chr3.4:93008426-93008445 | MS.gene80235:CDS | 30.0% | |
| CCAAAGATACCTTAAAGTTA+GGG | + | chr3.4:93008425-93008444 | MS.gene80235:CDS | 30.0% | |
| TAAAATGGTGGCAAAGAATT+TGG | - | chr3.4:93008299-93008318 | None:intergenic | 30.0% | |
| TTGTGCAATAATCAAAGGTT+TGG | + | chr3.4:93008513-93008532 | MS.gene80235:CDS | 30.0% | |
| !! | CCTAACTTTAAGGTATCTTT+GGG | - | chr3.4:93008427-93008446 | None:intergenic | 30.0% |
| !! | CTAACTTTAAGGTATCTTTG+GGG | - | chr3.4:93008426-93008445 | None:intergenic | 30.0% |
| AATCAAAGGTTTGGCTGATT+TGG | + | chr3.4:93008522-93008541 | MS.gene80235:CDS | 35.0% | |
| CAGTAAATGTTGAGTAAGCA+AGG | - | chr3.4:93008333-93008352 | None:intergenic | 35.0% | |
| CCCAAAGATACCTTAAAGTT+AGG | + | chr3.4:93008424-93008443 | MS.gene80235:CDS | 35.0% | |
| TCAACATTTACTGAGGCTAA+GGG | + | chr3.4:93008340-93008359 | MS.gene80235:CDS | 35.0% | |
| TGCTTACTCAACATTTACTG+AGG | + | chr3.4:93008333-93008352 | MS.gene80235:CDS | 35.0% | |
| TTGTCTTTGCACTGCAATTA+AGG | + | chr3.4:93008555-93008574 | MS.gene80235:CDS | 35.0% | |
| ! | GACTGGTTAATGTTGTTGTT+GGG | + | chr3.4:93008467-93008486 | MS.gene80235:CDS | 35.0% |
| !! | AAGGAGAGAGAGTACTAAAA+TGG | - | chr3.4:93008314-93008333 | None:intergenic | 35.0% |
| !! | CCCTAACTTTAAGGTATCTT+TGG | - | chr3.4:93008428-93008447 | None:intergenic | 35.0% |
| !!! | TTGTTTTTTGACAAGCACCA+AGG | - | chr3.4:93008630-93008649 | None:intergenic | 35.0% |
| AGCACAAACCCCTAACTTTA+AGG | - | chr3.4:93008437-93008456 | None:intergenic | 40.0% | |
| CAACAATTACTACCTGAAGC+AGG | - | chr3.4:93008496-93008515 | None:intergenic | 40.0% | |
| CAAGTTTATTCCGAGCACAT+TGG | - | chr3.4:93008581-93008600 | None:intergenic | 40.0% | |
| CTCAACATTTACTGAGGCTA+AGG | + | chr3.4:93008339-93008358 | MS.gene80235:CDS | 40.0% | |
| TGTCAAAAAACAATCCCTCC+TGG | + | chr3.4:93008637-93008656 | MS.gene80235:CDS | 40.0% | |
| !! | GAGAGAGAGTACTAAAATGG+TGG | - | chr3.4:93008311-93008330 | None:intergenic | 40.0% |
| !! | GGACTGGTTAATGTTGTTGT+TGG | + | chr3.4:93008466-93008485 | MS.gene80235:CDS | 40.0% |
| !!! | TTGTGCTGATGTTTTAGGAC+TGG | + | chr3.4:93008450-93008469 | MS.gene80235:CDS | 40.0% |
| AGGCACATTGAAAACCAGGA+GGG | - | chr3.4:93008654-93008673 | None:intergenic | 45.0% | |
| GCAATTAAGGCCAATGTGCT+CGG | + | chr3.4:93008568-93008587 | MS.gene80235:CDS | 45.0% | |
| TAGGCACATTGAAAACCAGG+AGG | - | chr3.4:93008655-93008674 | None:intergenic | 45.0% | |
| !! | GGGGTTTGTGCTGATGTTTT+AGG | + | chr3.4:93008445-93008464 | MS.gene80235:CDS | 45.0% |
| !! | GGTGGCAAAGAATTTGGTGT+TGG | - | chr3.4:93008293-93008312 | None:intergenic | 45.0% |
| !! | TTTGGCTTTGGCTTTGGTGA+TGG | - | chr3.4:93008376-93008395 | None:intergenic | 45.0% |
| ATGTACCTATCACCCTCACC+TGG | + | chr3.4:93008602-93008621 | MS.gene80235:CDS | 50.0% | |
| GTTGTTGGGAATCCTGCTTC+AGG | + | chr3.4:93008481-93008500 | MS.gene80235:CDS | 50.0% | |
| TTGACAAGCACCAAGGATCC+AGG | - | chr3.4:93008623-93008642 | None:intergenic | 50.0% | |
| !! | ATCTTTGGGGCAGTGACCTT+GGG | - | chr3.4:93008413-93008432 | None:intergenic | 50.0% |
| !! | GAAGGTGTTGGCTTTGGCTT+TGG | - | chr3.4:93008388-93008407 | None:intergenic | 50.0% |
| !! | GTTGGCTTTGGCTTTGGCTT+TGG | - | chr3.4:93008382-93008401 | None:intergenic | 50.0% |
| !! | TATCTTTGGGGCAGTGACCT+TGG | - | chr3.4:93008414-93008433 | None:intergenic | 50.0% |
| AAGCACCAAGGATCCAGGTG+AGG | - | chr3.4:93008618-93008637 | None:intergenic | 55.0% | |
| AAGCCAACACCTTCACCCCA+AGG | + | chr3.4:93008394-93008413 | MS.gene80235:CDS | 55.0% | |
| AGCACCAAGGATCCAGGTGA+GGG | - | chr3.4:93008617-93008636 | None:intergenic | 55.0% | |
| AGGATCCAGGTGAGGGTGAT+AGG | - | chr3.4:93008610-93008629 | None:intergenic | 55.0% | |
| ATCACCCTCACCTGGATCCT+TGG | + | chr3.4:93008610-93008629 | MS.gene80235:CDS | 55.0% | |
| ! | TGACCTTGGGGTGAAGGTGT+TGG | - | chr3.4:93008400-93008419 | None:intergenic | 55.0% |
| !! | TCTTTGGGGCAGTGACCTTG+GGG | - | chr3.4:93008412-93008431 | None:intergenic | 55.0% |
| !! | TGGGGTGAAGGTGTTGGCTT+TGG | - | chr3.4:93008394-93008413 | None:intergenic | 55.0% |
| GGGCAGTGACCTTGGGGTGA+AGG | - | chr3.4:93008406-93008425 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 93008283 | 93008675 | 93008283 | ID=MS.gene80235 |
| chr3.4 | mRNA | 93008283 | 93008675 | 93008283 | ID=MS.gene80235.t1;Parent=MS.gene80235 |
| chr3.4 | exon | 93008283 | 93008675 | 93008283 | ID=MS.gene80235.t1.exon1;Parent=MS.gene80235.t1 |
| chr3.4 | CDS | 93008283 | 93008675 | 93008283 | ID=cds.MS.gene80235.t1;Parent=MS.gene80235.t1 |
| Gene Sequence |
| Protein sequence |
