Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85496.t1 | XP_003598649.1 | 97.1 | 314 | 9 | 0 | 1 | 314 | 1 | 314 | 4.00E-169 | 604 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85496.t1 | P51074 | 65.3 | 314 | 109 | 0 | 1 | 314 | 1 | 314 | 2.2e-115 | 416.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85496.t1 | G7IW11 | 97.1 | 314 | 9 | 0 | 1 | 314 | 1 | 314 | 2.9e-169 | 604.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene85496 | -0.811614 | 6.41E-51 | -1.69E-46 |
| MS.gene049549 | MS.gene85496 | 0.815072 | 1.11E-51 | -1.69E-46 |
| MS.gene049611 | MS.gene85496 | 0.845607 | 3.66E-59 | -1.69E-46 |
| MS.gene049634 | MS.gene85496 | 0.804227 | 2.39E-49 | -1.69E-46 |
| MS.gene050170 | MS.gene85496 | -0.821071 | 4.91E-53 | -1.69E-46 |
| MS.gene050381 | MS.gene85496 | 0.816462 | 5.46E-52 | -1.69E-46 |
| MS.gene050496 | MS.gene85496 | -0.814936 | 1.20E-51 | -1.69E-46 |
| MS.gene050504 | MS.gene85496 | -0.828982 | 6.64E-55 | -1.69E-46 |
| MS.gene050577 | MS.gene85496 | -0.822753 | 2.00E-53 | -1.69E-46 |
| MS.gene050612 | MS.gene85496 | -0.825395 | 4.80E-54 | -1.69E-46 |
| MS.gene050675 | MS.gene85496 | -0.808915 | 2.45E-50 | -1.69E-46 |
| MS.gene050868 | MS.gene85496 | -0.826652 | 2.41E-54 | -1.69E-46 |
| MS.gene050871 | MS.gene85496 | -0.824712 | 6.96E-54 | -1.69E-46 |
| MS.gene05104 | MS.gene85496 | 0.846443 | 2.17E-59 | -1.69E-46 |
| MS.gene051127 | MS.gene85496 | 0.808732 | 2.68E-50 | -1.69E-46 |
| MS.gene051138 | MS.gene85496 | 0.844469 | 7.42E-59 | -1.69E-46 |
| MS.gene051364 | MS.gene85496 | 0.814603 | 1.42E-51 | -1.69E-46 |
| MS.gene051366 | MS.gene85496 | 0.814415 | 1.56E-51 | -1.69E-46 |
| MS.gene051440 | MS.gene85496 | 0.829696 | 4.46E-55 | -1.69E-46 |
| MS.gene051651 | MS.gene85496 | 0.832797 | 7.70E-56 | -1.69E-46 |
| MS.gene051973 | MS.gene85496 | 0.810093 | 1.37E-50 | -1.69E-46 |
| MS.gene052164 | MS.gene85496 | -0.800932 | 1.14E-48 | -1.69E-46 |
| MS.gene052211 | MS.gene85496 | 0.820721 | 5.91E-53 | -1.69E-46 |
| MS.gene05240 | MS.gene85496 | 0.815671 | 8.21E-52 | -1.69E-46 |
| MS.gene052606 | MS.gene85496 | 0.856674 | 2.74E-62 | -1.69E-46 |
| MS.gene052823 | MS.gene85496 | -0.801283 | 9.69E-49 | -1.69E-46 |
| MS.gene053203 | MS.gene85496 | -0.805219 | 1.48E-49 | -1.69E-46 |
| MS.gene053420 | MS.gene85496 | 0.82412 | 9.59E-54 | -1.69E-46 |
| MS.gene053887 | MS.gene85496 | 0.830383 | 3.03E-55 | -1.69E-46 |
| MS.gene054146 | MS.gene85496 | 0.815338 | 9.73E-52 | -1.69E-46 |
| MS.gene054181 | MS.gene85496 | 0.808968 | 2.39E-50 | -1.69E-46 |
| MS.gene054706 | MS.gene85496 | 0.823863 | 1.10E-53 | -1.69E-46 |
| MS.gene05470 | MS.gene85496 | -0.823689 | 1.21E-53 | -1.69E-46 |
| MS.gene054742 | MS.gene85496 | 0.80615 | 9.46E-50 | -1.69E-46 |
| MS.gene055124 | MS.gene85496 | 0.812866 | 3.42E-51 | -1.69E-46 |
| MS.gene055139 | MS.gene85496 | 0.802708 | 4.94E-49 | -1.69E-46 |
| MS.gene055154 | MS.gene85496 | 0.819412 | 1.18E-52 | -1.69E-46 |
| MS.gene055158 | MS.gene85496 | 0.809283 | 2.04E-50 | -1.69E-46 |
| MS.gene055202 | MS.gene85496 | 0.810351 | 1.20E-50 | -1.69E-46 |
| MS.gene055240 | MS.gene85496 | 0.834932 | 2.25E-56 | -1.69E-46 |
| MS.gene055502 | MS.gene85496 | -0.816164 | 6.37E-52 | -1.69E-46 |
| MS.gene05589 | MS.gene85496 | -0.840068 | 1.09E-57 | -1.69E-46 |
| MS.gene056198 | MS.gene85496 | 0.81012 | 1.35E-50 | -1.69E-46 |
| MS.gene056218 | MS.gene85496 | 0.836106 | 1.14E-56 | -1.69E-46 |
| MS.gene056224 | MS.gene85496 | 0.821435 | 4.04E-53 | -1.69E-46 |
| MS.gene056504 | MS.gene85496 | -0.844969 | 5.44E-59 | -1.69E-46 |
| MS.gene056590 | MS.gene85496 | 0.812684 | 3.75E-51 | -1.69E-46 |
| MS.gene056591 | MS.gene85496 | 0.813524 | 2.45E-51 | -1.69E-46 |
| MS.gene056694 | MS.gene85496 | 0.805824 | 1.11E-49 | -1.69E-46 |
| MS.gene056697 | MS.gene85496 | 0.813038 | 3.13E-51 | -1.69E-46 |
| MS.gene056748 | MS.gene85496 | 0.854904 | 9.02E-62 | -1.69E-46 |
| MS.gene056856 | MS.gene85496 | 0.849182 | 3.81E-60 | -1.69E-46 |
| MS.gene056988 | MS.gene85496 | 0.803033 | 4.23E-49 | -1.69E-46 |
| MS.gene057768 | MS.gene85496 | 0.851377 | 9.23E-61 | -1.69E-46 |
| MS.gene058068 | MS.gene85496 | 0.816997 | 4.14E-52 | -1.69E-46 |
| MS.gene058099 | MS.gene85496 | 0.823699 | 1.20E-53 | -1.69E-46 |
| MS.gene058109 | MS.gene85496 | 0.80232 | 5.93E-49 | -1.69E-46 |
| MS.gene058111 | MS.gene85496 | 0.803297 | 3.73E-49 | -1.69E-46 |
| MS.gene058117 | MS.gene85496 | 0.80217 | 6.37E-49 | -1.69E-46 |
| MS.gene058171 | MS.gene85496 | 0.825528 | 4.46E-54 | -1.69E-46 |
| MS.gene058173 | MS.gene85496 | 0.814173 | 1.76E-51 | -1.69E-46 |
| MS.gene058175 | MS.gene85496 | 0.83122 | 1.89E-55 | -1.69E-46 |
| MS.gene058334 | MS.gene85496 | 0.828528 | 8.55E-55 | -1.69E-46 |
| MS.gene058419 | MS.gene85496 | -0.800564 | 1.36E-48 | -1.69E-46 |
| MS.gene058544 | MS.gene85496 | -0.823095 | 1.67E-53 | -1.69E-46 |
| MS.gene058603 | MS.gene85496 | 0.838594 | 2.62E-57 | -1.69E-46 |
| MS.gene059022 | MS.gene85496 | -0.814757 | 1.31E-51 | -1.69E-46 |
| MS.gene059023 | MS.gene85496 | -0.800394 | 1.47E-48 | -1.69E-46 |
| MS.gene059045 | MS.gene85496 | 0.82284 | 1.91E-53 | -1.69E-46 |
| MS.gene059315 | MS.gene85496 | 0.822657 | 2.11E-53 | -1.69E-46 |
| MS.gene059677 | MS.gene85496 | -0.800783 | 1.23E-48 | -1.69E-46 |
| MS.gene059865 | MS.gene85496 | -0.824016 | 1.01E-53 | -1.69E-46 |
| MS.gene059953 | MS.gene85496 | 0.803025 | 4.24E-49 | -1.69E-46 |
| MS.gene059955 | MS.gene85496 | 0.816019 | 6.86E-52 | -1.69E-46 |
| MS.gene06000 | MS.gene85496 | -0.816457 | 5.48E-52 | -1.69E-46 |
| MS.gene060087 | MS.gene85496 | 0.800763 | 1.24E-48 | -1.69E-46 |
| MS.gene060593 | MS.gene85496 | 0.816512 | 5.32E-52 | -1.69E-46 |
| MS.gene060762 | MS.gene85496 | -0.816668 | 4.91E-52 | -1.69E-46 |
| MS.gene060778 | MS.gene85496 | -0.801695 | 7.98E-49 | -1.69E-46 |
| MS.gene06077 | MS.gene85496 | -0.82261 | 2.16E-53 | -1.69E-46 |
| MS.gene060982 | MS.gene85496 | -0.814319 | 1.64E-51 | -1.69E-46 |
| MS.gene061038 | MS.gene85496 | 0.80047 | 1.42E-48 | -1.69E-46 |
| MS.gene061044 | MS.gene85496 | 0.829558 | 4.81E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85496.t1 | MTR_3g018790 | 97.134 | 314 | 9 | 0 | 1 | 314 | 1 | 314 | 0.0 | 632 |
| MS.gene85496.t1 | MTR_3g018790 | 96.281 | 242 | 9 | 0 | 73 | 314 | 19 | 260 | 1.63e-174 | 483 |
| MS.gene85496.t1 | MTR_8g038220 | 70.382 | 314 | 93 | 0 | 1 | 314 | 1 | 314 | 5.13e-171 | 477 |
| MS.gene85496.t1 | MTR_8g038220 | 69.427 | 314 | 95 | 1 | 1 | 314 | 1 | 313 | 1.12e-167 | 468 |
| MS.gene85496.t1 | MTR_3g018780 | 69.108 | 314 | 97 | 0 | 1 | 314 | 1 | 314 | 7.80e-164 | 459 |
| MS.gene85496.t1 | MTR_8g038180 | 70.513 | 312 | 92 | 0 | 1 | 312 | 1 | 312 | 3.07e-163 | 457 |
| MS.gene85496.t1 | MTR_8g038210 | 68.790 | 314 | 97 | 1 | 1 | 314 | 1 | 313 | 2.83e-159 | 447 |
| MS.gene85496.t1 | MTR_8g038210 | 65.924 | 314 | 106 | 1 | 1 | 314 | 1 | 313 | 9.21e-153 | 431 |
| MS.gene85496.t1 | MTR_3g018920 | 80.861 | 209 | 8 | 1 | 1 | 209 | 1 | 177 | 2.97e-117 | 335 |
| MS.gene85496.t1 | MTR_2g031980 | 48.243 | 313 | 162 | 0 | 1 | 313 | 1 | 313 | 1.81e-107 | 315 |
| MS.gene85496.t1 | MTR_0276s0050 | 51.111 | 315 | 153 | 1 | 1 | 314 | 1 | 315 | 1.93e-102 | 303 |
| MS.gene85496.t1 | MTR_5g063670 | 47.115 | 312 | 164 | 1 | 1 | 311 | 1 | 312 | 1.06e-97 | 291 |
| MS.gene85496.t1 | MTR_8g038150 | 41.456 | 316 | 181 | 2 | 1 | 312 | 1 | 316 | 1.02e-76 | 238 |
| MS.gene85496.t1 | MTR_8g107640 | 39.936 | 313 | 185 | 3 | 1 | 311 | 1 | 312 | 2.08e-71 | 224 |
| MS.gene85496.t1 | MTR_1g033560 | 36.102 | 313 | 197 | 3 | 1 | 311 | 1 | 312 | 6.53e-66 | 209 |
| MS.gene85496.t1 | MTR_6g071615 | 40.446 | 314 | 182 | 5 | 1 | 311 | 1 | 312 | 2.43e-65 | 208 |
| MS.gene85496.t1 | MTR_6g071605 | 38.535 | 314 | 188 | 5 | 1 | 311 | 1 | 312 | 3.15e-65 | 208 |
| MS.gene85496.t1 | MTR_1g112520 | 38.019 | 313 | 191 | 3 | 1 | 311 | 1 | 312 | 1.01e-61 | 199 |
| MS.gene85496.t1 | MTR_3g018925 | 93.814 | 97 | 6 | 0 | 218 | 314 | 13 | 109 | 1.59e-59 | 186 |
| MS.gene85496.t1 | MTR_6g071595 | 37.124 | 299 | 186 | 2 | 14 | 311 | 15 | 312 | 2.73e-56 | 185 |
| MS.gene85496.t1 | MTR_8g038170 | 36.076 | 316 | 177 | 6 | 14 | 312 | 5 | 312 | 1.33e-53 | 178 |
| MS.gene85496.t1 | MTR_8g038170 | 36.076 | 316 | 177 | 6 | 14 | 312 | 5 | 312 | 1.33e-53 | 178 |
| MS.gene85496.t1 | MTR_6g071595 | 34.599 | 237 | 153 | 2 | 14 | 249 | 15 | 250 | 1.38e-39 | 140 |
| MS.gene85496.t1 | MTR_6g028030 | 26.129 | 310 | 217 | 5 | 8 | 309 | 2 | 307 | 6.45e-32 | 121 |
| MS.gene85496.t1 | MTR_8g038090 | 47.222 | 72 | 33 | 2 | 244 | 312 | 22 | 91 | 2.45e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85496.t1 | AT5G12380 | 55.305 | 311 | 139 | 0 | 1 | 311 | 1 | 311 | 5.23e-124 | 358 |
| MS.gene85496.t1 | AT5G10230 | 51.923 | 312 | 149 | 1 | 1 | 311 | 1 | 312 | 7.29e-108 | 317 |
| MS.gene85496.t1 | AT1G35720 | 50.949 | 316 | 153 | 2 | 1 | 314 | 1 | 316 | 3.66e-107 | 315 |
| MS.gene85496.t1 | AT5G10220 | 51.582 | 316 | 150 | 2 | 1 | 313 | 1 | 316 | 1.61e-105 | 311 |
| MS.gene85496.t1 | AT5G65020 | 50.479 | 313 | 153 | 2 | 1 | 311 | 1 | 313 | 1.34e-103 | 306 |
| MS.gene85496.t1 | AT5G65020 | 50.347 | 288 | 142 | 1 | 25 | 311 | 11 | 298 | 4.60e-96 | 286 |
| MS.gene85496.t1 | AT2G38760 | 43.396 | 318 | 173 | 3 | 1 | 311 | 1 | 318 | 4.53e-88 | 266 |
| MS.gene85496.t1 | AT1G68090 | 36.422 | 313 | 197 | 2 | 1 | 311 | 1 | 313 | 7.14e-62 | 199 |
| MS.gene85496.t1 | AT2G38750 | 33.333 | 324 | 187 | 9 | 12 | 314 | 4 | 319 | 2.97e-44 | 154 |
| MS.gene85496.t1 | AT1G68090 | 34.800 | 250 | 161 | 2 | 1 | 248 | 1 | 250 | 4.56e-44 | 151 |
| MS.gene85496.t1 | AT2G38750 | 33.442 | 308 | 180 | 7 | 25 | 314 | 2 | 302 | 8.46e-44 | 152 |
Find 67 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTCTTGAGTCTGAGCTTTC+AGG | 0.157675 | 3.4:+12343582 | MS.gene85496:CDS |
| TGGGGTTGGTGAGTTCATTT+AGG | 0.261066 | 3.4:+12349592 | MS.gene85496:CDS |
| ATGACCTAATATTGCTATAA+TGG | 0.265808 | 3.4:-12343490 | None:intergenic |
| CTTGTCTGATTTGAGTCCTT+TGG | 0.274325 | 3.4:-12343524 | None:intergenic |
| AGTGGTTGGAAGGAGCAATA+AGG | 0.292571 | 3.4:-12342717 | None:intergenic |
| AAAGCCATTATAGCAATATT+AGG | 0.311002 | 3.4:+12343486 | MS.gene85496:CDS |
| GCTCTTCAAAGGGCTGTTAA+AGG | 0.314120 | 3.4:+12342760 | MS.gene85496:CDS |
| TAGCAACTTTCAATTGCTAT+AGG | 0.339675 | 3.4:+12349748 | MS.gene85496:CDS |
| AGCAATGTATAGATGGATAT+TGG | 0.374279 | 3.4:+12349176 | MS.gene85496:CDS |
| TTGTCTGATTTGAGTCCTTT+GGG | 0.385685 | 3.4:-12343523 | None:intergenic |
| GTGGTTGGAAGGAGCAATAA+GGG | 0.389381 | 3.4:-12342716 | None:intergenic |
| AGCAGAACGTGAAGCTTTGT+TGG | 0.406487 | 3.4:+12349203 | MS.gene85496:CDS |
| AGAGCTTCTGCATCTTCAAC+TGG | 0.416203 | 3.4:-12342742 | None:intergenic |
| CTCAAATTGAAAAGTTCATC+AGG | 0.424291 | 3.4:-12349294 | None:intergenic |
| GTGAGTTCATTTAGGTATGG+TGG | 0.426066 | 3.4:+12349600 | MS.gene85496:CDS |
| TACAGAGAGCAATGTATAGA+TGG | 0.433157 | 3.4:+12349169 | MS.gene85496:intron |
| GATTGTCACCAGGGCTGAAA+AGG | 0.444918 | 3.4:+12359500 | MS.gene85496:CDS |
| CACCAGGGCTGAAAAGGACT+TGG | 0.445393 | 3.4:+12359506 | MS.gene85496:CDS |
| AACAAAGCTTCACGTTCTGC+TGG | 0.445499 | 3.4:-12349201 | None:intergenic |
| TTGCAGAAATTGTCCGATGA+AGG | 0.446312 | 3.4:+12358850 | MS.gene85496:intron |
| ACGAAGATGGCCATTGGTAT+TGG | 0.448667 | 3.4:-12349367 | None:intergenic |
| ATGGTCATTGATGCAGCTAA+TGG | 0.457405 | 3.4:-12358905 | None:intergenic |
| GAGTGAGGTCAATGCAAGTT+TGG | 0.459503 | 3.4:+12349623 | MS.gene85496:CDS |
| TACCAATGGCCATCTTCGTC+AGG | 0.461380 | 3.4:+12349371 | MS.gene85496:CDS |
| CAATCGATATAAACGTTCCT+TGG | 0.468735 | 3.4:+12349329 | MS.gene85496:CDS |
| GAAATTTCTCCGTACTCTGA+TGG | 0.473828 | 3.4:+12359611 | MS.gene85496:CDS |
| AAATTTCTCCGTACTCTGAT+GGG | 0.489373 | 3.4:+12359612 | MS.gene85496:CDS |
| TTGGTGAGTTCATTTAGGTA+TGG | 0.492091 | 3.4:+12349597 | MS.gene85496:CDS |
| TGAGTTCATTTAGGTATGGT+GGG | 0.493783 | 3.4:+12349601 | MS.gene85496:CDS |
| TATGACTTGCCTGACGAAGA+TGG | 0.518374 | 3.4:-12349380 | None:intergenic |
| CTGCATCTTCAACTGGAGAG+TGG | 0.522358 | 3.4:-12342735 | None:intergenic |
| CAGGGCTGAAAAGGACTTGG+AGG | 0.523644 | 3.4:+12359509 | MS.gene85496:CDS |
| AAGATGCAGAAGCTCTTCAA+AGG | 0.524239 | 3.4:+12342749 | MS.gene85496:CDS |
| ATCTTCAACTGGAGAGTGGT+TGG | 0.525012 | 3.4:-12342731 | None:intergenic |
| TGCATCCTCATCGGTTCCAA+CGG | 0.525960 | 3.4:-12359466 | None:intergenic |
| CCATAATAAGTACTATGAAA+AGG | 0.528583 | 3.4:+12358924 | MS.gene85496:CDS |
| CTTCTCTCCCCATCAGAGTA+CGG | 0.530626 | 3.4:-12359620 | None:intergenic |
| CATAAACTATCATGTGATTG+TGG | 0.538495 | 3.4:+12349251 | MS.gene85496:CDS |
| TGGCCACTGCATGCTCAAGT+TGG | 0.542716 | 3.4:-12359566 | None:intergenic |
| TCGATATAAACGTTCCTTGG+AGG | 0.552747 | 3.4:+12349332 | MS.gene85496:CDS |
| CCATGGCATTGCTATCACTA+AGG | 0.565040 | 3.4:+12349776 | MS.gene85496:CDS |
| TCACCCGTGTGATTGTCACC+AGG | 0.566637 | 3.4:+12359490 | MS.gene85496:CDS |
| AGGAGCAATAAGGGAAGCCA+TGG | 0.568515 | 3.4:-12342707 | None:intergenic |
| TCAACTGGAGAGTGGTTGGA+AGG | 0.576644 | 3.4:-12342727 | None:intergenic |
| ACGGGTGAGTGCATCCTCAT+CGG | 0.580626 | 3.4:-12359475 | None:intergenic |
| TGCCTGACGAAGATGGCCAT+TGG | 0.588390 | 3.4:-12349373 | None:intergenic |
| CAGCCCTGGTGACAATCACA+CGG | 0.588685 | 3.4:-12359494 | None:intergenic |
| AGATGCAGAAGCTCTTCAAA+GGG | 0.589809 | 3.4:+12342750 | MS.gene85496:CDS |
| ATACTATGAACTCTATCAAG+AGG | 0.590523 | 3.4:+12343548 | MS.gene85496:CDS |
| CGCAATGCGATGGAAACCGT+TGG | 0.591098 | 3.4:+12359450 | MS.gene85496:CDS |
| GTAGGTTCTACGCAATGCGA+TGG | 0.594107 | 3.4:+12359440 | MS.gene85496:intron |
| GGTAGCCACGTCTTCCTCCA+AGG | 0.596837 | 3.4:-12349346 | None:intergenic |
| ATTTAGGTATGGTGGGAGTG+AGG | 0.611981 | 3.4:+12349608 | MS.gene85496:CDS |
| ACGTTCCTTGGAGGAAGACG+TGG | 0.626271 | 3.4:+12349341 | MS.gene85496:CDS |
| AAAGCTATCAGATCCTTCAT+CGG | 0.630218 | 3.4:-12358863 | None:intergenic |
| GTCATAGAAATGCTACCCAA+AGG | 0.630775 | 3.4:+12343508 | MS.gene85496:CDS |
| CCTTAGTGATAGCAATGCCA+TGG | 0.636508 | 3.4:-12349776 | None:intergenic |
| CACCCGTGTGATTGTCACCA+GGG | 0.640928 | 3.4:+12359491 | MS.gene85496:CDS |
| GACGTGGCTACCAATACCAA+TGG | 0.642397 | 3.4:+12349357 | MS.gene85496:CDS |
| AATTGCTATAGGCATGACCA+TGG | 0.650398 | 3.4:+12349759 | MS.gene85496:CDS |
| AATTTCTCCGTACTCTGATG+GGG | 0.656742 | 3.4:+12359613 | MS.gene85496:CDS |
| TAATCAGAATTCTTACAACA+AGG | 0.662171 | 3.4:+12349709 | MS.gene85496:CDS |
| GGAAACCGTTGGAACCGATG+AGG | 0.668829 | 3.4:+12359461 | MS.gene85496:CDS |
| TGAAGCTGATATGCTTCATG+AGG | 0.671008 | 3.4:+12349653 | MS.gene85496:CDS |
| TGTCCAACTTGAGCATGCAG+TGG | 0.682514 | 3.4:+12359563 | MS.gene85496:CDS |
| AGGATCTGATAGCTTTCACA+AGG | 0.686055 | 3.4:+12358870 | MS.gene85496:CDS |
| AGCCCTGGTGACAATCACAC+GGG | 0.700629 | 3.4:-12359493 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 12342709 | 12359647 | 12342709 | ID=MS.gene85496 |
| chr3.4 | mRNA | 12342709 | 12359647 | 12342709 | ID=MS.gene85496.t1;Parent=MS.gene85496 |
| chr3.4 | exon | 12342709 | 12342781 | 12342709 | ID=MS.gene85496.t1.exon1;Parent=MS.gene85496.t1 |
| chr3.4 | CDS | 12342709 | 12342781 | 12342709 | ID=cds.MS.gene85496.t1;Parent=MS.gene85496.t1 |
| chr3.4 | exon | 12343469 | 12343614 | 12343469 | ID=MS.gene85496.t1.exon2;Parent=MS.gene85496.t1 |
| chr3.4 | CDS | 12343469 | 12343614 | 12343469 | ID=cds.MS.gene85496.t1;Parent=MS.gene85496.t1 |
| chr3.4 | exon | 12349174 | 12349392 | 12349174 | ID=MS.gene85496.t1.exon3;Parent=MS.gene85496.t1 |
| chr3.4 | CDS | 12349174 | 12349392 | 12349174 | ID=cds.MS.gene85496.t1;Parent=MS.gene85496.t1 |
| chr3.4 | exon | 12349585 | 12349797 | 12349585 | ID=MS.gene85496.t1.exon4;Parent=MS.gene85496.t1 |
| chr3.4 | CDS | 12349585 | 12349797 | 12349585 | ID=cds.MS.gene85496.t1;Parent=MS.gene85496.t1 |
| chr3.4 | exon | 12358856 | 12358945 | 12358856 | ID=MS.gene85496.t1.exon5;Parent=MS.gene85496.t1 |
| chr3.4 | CDS | 12358856 | 12358945 | 12358856 | ID=cds.MS.gene85496.t1;Parent=MS.gene85496.t1 |
| chr3.4 | exon | 12359444 | 12359647 | 12359444 | ID=MS.gene85496.t1.exon6;Parent=MS.gene85496.t1 |
| chr3.4 | CDS | 12359444 | 12359647 | 12359444 | ID=cds.MS.gene85496.t1;Parent=MS.gene85496.t1 |
| Gene Sequence |
| Protein sequence |
