Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90823.t1 | XP_013470484.1 | 97.1 | 682 | 20 | 0 | 1 | 682 | 1 | 682 | 0.00E+00 | 1240.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90823.t1 | A0A072VRW6 | 97.1 | 682 | 20 | 0 | 1 | 682 | 1 | 682 | 0.0e+00 | 1240.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene90823 | 0.842548 | 2.42E-58 | -1.69E-46 |
| MS.gene049254 | MS.gene90823 | 0.859901 | 3.00E-63 | -1.69E-46 |
| MS.gene049272 | MS.gene90823 | 0.803508 | 3.37E-49 | -1.69E-46 |
| MS.gene049404 | MS.gene90823 | 0.801784 | 7.65E-49 | -1.69E-46 |
| MS.gene049435 | MS.gene90823 | 0.801032 | 1.09E-48 | -1.69E-46 |
| MS.gene049501 | MS.gene90823 | 0.825052 | 5.78E-54 | -1.69E-46 |
| MS.gene049567 | MS.gene90823 | 0.812813 | 3.51E-51 | -1.69E-46 |
| MS.gene049585 | MS.gene90823 | 0.814176 | 1.76E-51 | -1.69E-46 |
| MS.gene049711 | MS.gene90823 | 0.814355 | 1.61E-51 | -1.69E-46 |
| MS.gene049850 | MS.gene90823 | 0.837001 | 6.72E-57 | -1.69E-46 |
| MS.gene050156 | MS.gene90823 | 0.834819 | 2.40E-56 | -1.69E-46 |
| MS.gene050221 | MS.gene90823 | 0.805021 | 1.63E-49 | -1.69E-46 |
| MS.gene050442 | MS.gene90823 | 0.838272 | 3.17E-57 | -1.69E-46 |
| MS.gene050559 | MS.gene90823 | 0.818442 | 1.96E-52 | -1.69E-46 |
| MS.gene050561 | MS.gene90823 | 0.826326 | 2.88E-54 | -1.69E-46 |
| MS.gene050562 | MS.gene90823 | 0.814917 | 1.21E-51 | -1.69E-46 |
| MS.gene050657 | MS.gene90823 | 0.805312 | 1.42E-49 | -1.69E-46 |
| MS.gene050719 | MS.gene90823 | 0.809864 | 1.53E-50 | -1.69E-46 |
| MS.gene050721 | MS.gene90823 | 0.80471 | 1.90E-49 | -1.69E-46 |
| MS.gene050759 | MS.gene90823 | 0.823203 | 1.57E-53 | -1.69E-46 |
| MS.gene050962 | MS.gene90823 | 0.815339 | 9.73E-52 | -1.69E-46 |
| MS.gene051147 | MS.gene90823 | 0.811701 | 6.14E-51 | -1.69E-46 |
| MS.gene051247 | MS.gene90823 | 0.817935 | 2.55E-52 | -1.69E-46 |
| MS.gene051279 | MS.gene90823 | 0.809614 | 1.73E-50 | -1.69E-46 |
| MS.gene051490 | MS.gene90823 | 0.820624 | 6.22E-53 | -1.69E-46 |
| MS.gene051719 | MS.gene90823 | 0.802913 | 4.48E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene90823 | 0.870836 | 1.08E-66 | -1.69E-46 |
| MS.gene051800 | MS.gene90823 | 0.825967 | 3.51E-54 | -1.69E-46 |
| MS.gene051957 | MS.gene90823 | 0.803986 | 2.68E-49 | -1.69E-46 |
| MS.gene052020 | MS.gene90823 | 0.81525 | 1.02E-51 | -1.69E-46 |
| MS.gene052042 | MS.gene90823 | 0.809852 | 1.54E-50 | -1.69E-46 |
| MS.gene052311 | MS.gene90823 | 0.811656 | 6.28E-51 | -1.69E-46 |
| MS.gene052463 | MS.gene90823 | 0.833474 | 5.22E-56 | -1.69E-46 |
| MS.gene052493 | MS.gene90823 | 0.803957 | 2.72E-49 | -1.69E-46 |
| MS.gene052516 | MS.gene90823 | 0.842226 | 2.94E-58 | -1.69E-46 |
| MS.gene052519 | MS.gene90823 | 0.8054 | 1.36E-49 | -1.69E-46 |
| MS.gene052582 | MS.gene90823 | 0.800697 | 1.28E-48 | -1.69E-46 |
| MS.gene052584 | MS.gene90823 | 0.800944 | 1.14E-48 | -1.69E-46 |
| MS.gene052611 | MS.gene90823 | 0.804222 | 2.40E-49 | -1.69E-46 |
| MS.gene052773 | MS.gene90823 | 0.817169 | 3.79E-52 | -1.69E-46 |
| MS.gene052896 | MS.gene90823 | 0.800215 | 1.60E-48 | -1.69E-46 |
| MS.gene053079 | MS.gene90823 | 0.821742 | 3.44E-53 | -1.69E-46 |
| MS.gene053144 | MS.gene90823 | 0.812282 | 4.59E-51 | -1.69E-46 |
| MS.gene053226 | MS.gene90823 | 0.826166 | 3.15E-54 | -1.69E-46 |
| MS.gene053296 | MS.gene90823 | 0.820339 | 7.23E-53 | -1.69E-46 |
| MS.gene053621 | MS.gene90823 | 0.819186 | 1.33E-52 | -1.69E-46 |
| MS.gene053966 | MS.gene90823 | 0.817485 | 3.22E-52 | -1.69E-46 |
| MS.gene053998 | MS.gene90823 | 0.815456 | 9.16E-52 | -1.69E-46 |
| MS.gene05414 | MS.gene90823 | 0.801808 | 7.56E-49 | -1.69E-46 |
| MS.gene05415 | MS.gene90823 | 0.819298 | 1.25E-52 | -1.69E-46 |
| MS.gene054236 | MS.gene90823 | 0.808764 | 2.64E-50 | -1.69E-46 |
| MS.gene05423 | MS.gene90823 | 0.820781 | 5.72E-53 | -1.69E-46 |
| MS.gene054467 | MS.gene90823 | 0.818096 | 2.34E-52 | -1.69E-46 |
| MS.gene054468 | MS.gene90823 | 0.803405 | 3.54E-49 | -1.69E-46 |
| MS.gene054576 | MS.gene90823 | 0.804712 | 1.89E-49 | -1.69E-46 |
| MS.gene054584 | MS.gene90823 | 0.80602 | 1.01E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene90823 | 0.833676 | 4.65E-56 | -1.69E-46 |
| MS.gene055227 | MS.gene90823 | 0.804431 | 2.17E-49 | -1.69E-46 |
| MS.gene055465 | MS.gene90823 | 0.825712 | 4.04E-54 | -1.69E-46 |
| MS.gene055466 | MS.gene90823 | 0.81883 | 1.60E-52 | -1.69E-46 |
| MS.gene055469 | MS.gene90823 | 0.808749 | 2.66E-50 | -1.69E-46 |
| MS.gene055513 | MS.gene90823 | 0.80958 | 1.76E-50 | -1.69E-46 |
| MS.gene055586 | MS.gene90823 | 0.800761 | 1.24E-48 | -1.69E-46 |
| MS.gene055589 | MS.gene90823 | 0.803911 | 2.78E-49 | -1.69E-46 |
| MS.gene055724 | MS.gene90823 | 0.8105 | 1.12E-50 | -1.69E-46 |
| MS.gene055778 | MS.gene90823 | 0.819026 | 1.44E-52 | -1.69E-46 |
| MS.gene055818 | MS.gene90823 | 0.864559 | 1.11E-64 | -1.69E-46 |
| MS.gene055864 | MS.gene90823 | 0.843292 | 1.53E-58 | -1.69E-46 |
| MS.gene055875 | MS.gene90823 | 0.821353 | 4.22E-53 | -1.69E-46 |
| MS.gene055926 | MS.gene90823 | 0.823331 | 1.47E-53 | -1.69E-46 |
| MS.gene056050 | MS.gene90823 | 0.810052 | 1.40E-50 | -1.69E-46 |
| MS.gene056162 | MS.gene90823 | 0.814123 | 1.81E-51 | -1.69E-46 |
| MS.gene056174 | MS.gene90823 | 0.853031 | 3.12E-61 | -1.69E-46 |
| MS.gene056308 | MS.gene90823 | 0.802477 | 5.51E-49 | -1.69E-46 |
| MS.gene056507 | MS.gene90823 | 0.824588 | 7.44E-54 | -1.69E-46 |
| MS.gene056595 | MS.gene90823 | 0.807649 | 4.56E-50 | -1.69E-46 |
| MS.gene056699 | MS.gene90823 | 0.835832 | 1.33E-56 | -1.69E-46 |
| MS.gene056779 | MS.gene90823 | 0.808468 | 3.05E-50 | -1.69E-46 |
| MS.gene05686 | MS.gene90823 | 0.839921 | 1.19E-57 | -1.69E-46 |
| MS.gene05690 | MS.gene90823 | 0.808089 | 3.68E-50 | -1.69E-46 |
| MS.gene057026 | MS.gene90823 | 0.81971 | 1.01E-52 | -1.69E-46 |
| MS.gene057034 | MS.gene90823 | 0.82172 | 3.47E-53 | -1.69E-46 |
| MS.gene057444 | MS.gene90823 | 0.802077 | 6.66E-49 | -1.69E-46 |
| MS.gene057598 | MS.gene90823 | 0.803948 | 2.73E-49 | -1.69E-46 |
| MS.gene057755 | MS.gene90823 | 0.803268 | 3.78E-49 | -1.69E-46 |
| MS.gene057869 | MS.gene90823 | 0.814559 | 1.45E-51 | -1.69E-46 |
| MS.gene057915 | MS.gene90823 | 0.840832 | 6.86E-58 | -1.69E-46 |
| MS.gene058010 | MS.gene90823 | 0.862539 | 4.72E-64 | -1.69E-46 |
| MS.gene058037 | MS.gene90823 | 0.80779 | 4.26E-50 | -1.69E-46 |
| MS.gene058289 | MS.gene90823 | 0.832279 | 1.03E-55 | -1.69E-46 |
| MS.gene058625 | MS.gene90823 | 0.83705 | 6.53E-57 | -1.69E-46 |
| MS.gene058979 | MS.gene90823 | 0.831836 | 1.33E-55 | -1.69E-46 |
| MS.gene059015 | MS.gene90823 | 0.815158 | 1.07E-51 | -1.69E-46 |
| MS.gene059272 | MS.gene90823 | 0.82213 | 2.79E-53 | -1.69E-46 |
| MS.gene059283 | MS.gene90823 | 0.832618 | 8.53E-56 | -1.69E-46 |
| MS.gene059439 | MS.gene90823 | 0.80881 | 2.58E-50 | -1.69E-46 |
| MS.gene059570 | MS.gene90823 | 0.876226 | 1.65E-68 | -1.69E-46 |
| MS.gene059625 | MS.gene90823 | 0.810704 | 1.01E-50 | -1.69E-46 |
| MS.gene059634 | MS.gene90823 | 0.809156 | 2.18E-50 | -1.69E-46 |
| MS.gene059965 | MS.gene90823 | 0.812658 | 3.80E-51 | -1.69E-46 |
| MS.gene060011 | MS.gene90823 | 0.804544 | 2.05E-49 | -1.69E-46 |
| MS.gene060167 | MS.gene90823 | 0.862915 | 3.61E-64 | -1.69E-46 |
| MS.gene060322 | MS.gene90823 | 0.810312 | 1.23E-50 | -1.69E-46 |
| MS.gene060373 | MS.gene90823 | 0.801348 | 9.39E-49 | -1.69E-46 |
| MS.gene06052 | MS.gene90823 | 0.837288 | 5.68E-57 | -1.69E-46 |
| MS.gene060840 | MS.gene90823 | 0.815869 | 7.41E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90823.t1 | MTR_1g115610 | 98.387 | 682 | 11 | 0 | 1 | 682 | 1 | 682 | 0.0 | 1368 |
| MS.gene90823.t1 | MTR_1g115610 | 97.727 | 528 | 12 | 0 | 155 | 682 | 93 | 620 | 0.0 | 1046 |
| MS.gene90823.t1 | MTR_1g115610 | 98.235 | 510 | 9 | 0 | 173 | 682 | 1 | 510 | 0.0 | 1021 |
| MS.gene90823.t1 | MTR_1g115610 | 98.406 | 502 | 8 | 0 | 1 | 502 | 1 | 502 | 0.0 | 1004 |
| MS.gene90823.t1 | MTR_1g115610 | 98.330 | 479 | 8 | 0 | 1 | 479 | 1 | 479 | 0.0 | 954 |
| MS.gene90823.t1 | MTR_1g115610 | 97.414 | 348 | 9 | 0 | 155 | 502 | 227 | 574 | 0.0 | 683 |
| MS.gene90823.t1 | MTR_1g115610 | 98.726 | 157 | 2 | 0 | 1 | 157 | 1 | 157 | 1.46e-102 | 325 |
| MS.gene90823.t1 | MTR_1g067400 | 48.373 | 676 | 320 | 10 | 3 | 675 | 2 | 651 | 0.0 | 567 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90823.t1 | AT5G13560 | 60.058 | 686 | 253 | 7 | 3 | 676 | 2 | 678 | 0.0 | 780 |
| MS.gene90823.t1 | AT2G37370 | 50.585 | 684 | 316 | 7 | 3 | 681 | 2 | 668 | 0.0 | 608 |
| MS.gene90823.t1 | AT2G37370 | 50.585 | 684 | 316 | 7 | 3 | 681 | 2 | 668 | 0.0 | 608 |
| MS.gene90823.t1 | AT2G37370 | 50.585 | 684 | 316 | 7 | 3 | 681 | 2 | 668 | 0.0 | 608 |
| MS.gene90823.t1 | AT2G37370 | 54.135 | 532 | 238 | 3 | 3 | 534 | 2 | 527 | 0.0 | 528 |
Find 130 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTATAGGCTTTGTCTTAC+TGG | 0.137879 | 1.4:-87875455 | MS.gene90823:intron |
| CCCTTCTCCTGGAGATGTTT+GGG | 0.212578 | 1.4:-87875689 | MS.gene90823:intron |
| CTTTATTATGATTCTGATAT+TGG | 0.221062 | 1.4:-87876605 | MS.gene90823:CDS |
| AATGCGATCATGAAGGATTT+TGG | 0.222308 | 1.4:+87877955 | None:intergenic |
| CCTTGCTGTTGAAGATATTA+AGG | 0.258689 | 1.4:-87877562 | MS.gene90823:CDS |
| TCCCTTCTCCTGGAGATGTT+TGG | 0.263141 | 1.4:-87875690 | MS.gene90823:CDS |
| CAAAACGTGGATCAACTTTC+TGG | 0.265233 | 1.4:-87868631 | MS.gene90823:CDS |
| GAATCCACAGAGACCTTCTT+TGG | 0.276603 | 1.4:-87877538 | MS.gene90823:intron |
| GTTGTAGGTTAATACTTCTT+TGG | 0.286653 | 1.4:-87868909 | MS.gene90823:intron |
| GATTTGAGTGAAGGTGATTT+TGG | 0.288162 | 1.4:+87866394 | None:intergenic |
| TCTTGAAGCTGAACTGAAAA+AGG | 0.292038 | 1.4:-87870004 | MS.gene90823:intron |
| AGTAAGCAGCTTACAAGATT+TGG | 0.297153 | 1.4:-87875408 | MS.gene90823:CDS |
| GCCAAGCTTGAATCTGAGTT+TGG | 0.308709 | 1.4:-87866340 | MS.gene90823:CDS |
| CTCAACAGGGAAATATTTCC+AGG | 0.314692 | 1.4:-87866901 | MS.gene90823:intron |
| TCACAACAAATGTTCCAATA+TGG | 0.319869 | 1.4:+87867616 | None:intergenic |
| TCTCATTACCTTGGCTTCAT+AGG | 0.340227 | 1.4:+87867280 | None:intergenic |
| GAGCCTTGTATTAACCATAT+TGG | 0.343181 | 1.4:-87867630 | MS.gene90823:CDS |
| CTGAGAGAGTTCAGTTGCTT+AGG | 0.366068 | 1.4:-87877665 | MS.gene90823:CDS |
| AGGGAAACCTCTTCCTCGTT+TGG | 0.366803 | 1.4:+87875708 | None:intergenic |
| GCTTGGCTAATTCAGCTTCA+TGG | 0.372198 | 1.4:+87866356 | None:intergenic |
| ATGCTGAAGCCTCTAGTCTT+AGG | 0.373993 | 1.4:-87874200 | MS.gene90823:CDS |
| TCAACTTTCTGGAAGATACT+TGG | 0.382032 | 1.4:-87868620 | MS.gene90823:CDS |
| ATCTTGTAAGCTGCTTACTA+TGG | 0.382980 | 1.4:+87875412 | None:intergenic |
| AAAACATCGCGAAAATTTAG+TGG | 0.389484 | 1.4:+87876575 | None:intergenic |
| AAATTTCTGTATTTGACTGC+TGG | 0.391944 | 1.4:+87868592 | None:intergenic |
| TGAGAATTTGTCGGGAGCTT+CGG | 0.392252 | 1.4:-87877616 | MS.gene90823:CDS |
| AGTTGAGCATCTGAAGATAA+AGG | 0.396507 | 1.4:-87868816 | MS.gene90823:intron |
| GATTGTTTGCTTCCTCAAAC+TGG | 0.403188 | 1.4:+87868843 | None:intergenic |
| CAACAGAGGAAATTAATGAT+TGG | 0.407683 | 1.4:-87866294 | MS.gene90823:CDS |
| TCACCTTCTGCTTCAGTTGG+AGG | 0.409354 | 1.4:-87866451 | MS.gene90823:CDS |
| CCTATAGGCTTTGTCTTACT+GGG | 0.415841 | 1.4:-87875454 | MS.gene90823:intron |
| GACCTCGACGGCTTTGTTGA+CGG | 0.422835 | 1.4:+87878063 | None:intergenic |
| CCTTCACCTTCTGCTTCAGT+TGG | 0.429537 | 1.4:-87866454 | MS.gene90823:CDS |
| GCCTTCAGCAACGGCTTGAC+CGG | 0.436205 | 1.4:+87877979 | None:intergenic |
| AACAGAGGAAATTAATGATT+GGG | 0.436246 | 1.4:-87866293 | MS.gene90823:CDS |
| TTTGCACAACGTGCCATCAC+TGG | 0.440668 | 1.4:-87875011 | MS.gene90823:CDS |
| CAGCAATAATCCTTCCAGTC+TGG | 0.447710 | 1.4:+87873226 | None:intergenic |
| AAAGAGATTGAGAATTTGTC+GGG | 0.449006 | 1.4:-87877624 | MS.gene90823:CDS |
| GGAAGAGGTTTCCCTTCTCC+TGG | 0.453671 | 1.4:-87875700 | MS.gene90823:CDS |
| TCCTTACCAGTACTTCATCT+TGG | 0.453824 | 1.4:+87875366 | None:intergenic |
| GGGCTCTCTATTTCAAGAAC+TGG | 0.470284 | 1.4:+87866526 | None:intergenic |
| TACAGAAATTTATGAGAAGC+AGG | 0.470345 | 1.4:-87868580 | MS.gene90823:CDS |
| GTGACTAAAGGTGGTGAAAC+TGG | 0.471373 | 1.4:-87870847 | MS.gene90823:CDS |
| CTAAGCAACTGAACTCTCTC+AGG | 0.473370 | 1.4:+87877666 | None:intergenic |
| GCCGGTCAAGCCGTTGCTGA+AGG | 0.474065 | 1.4:-87877980 | MS.gene90823:CDS |
| TCCTGAGGTTCATGCCCAAA+AGG | 0.476205 | 1.4:-87873174 | MS.gene90823:intron |
| TGACAAGCTGAAGGTCTTAA+CGG | 0.478018 | 1.4:-87872500 | MS.gene90823:CDS |
| AAATTTATGAGAAGCAGGTC+AGG | 0.484747 | 1.4:-87868575 | MS.gene90823:intron |
| TATTATGATTCTGATATTGG+AGG | 0.487783 | 1.4:-87876602 | MS.gene90823:CDS |
| CAACTTTCTGGAAGATACTT+GGG | 0.487980 | 1.4:-87868619 | MS.gene90823:CDS |
| TAAAGAGATTGAGAATTTGT+CGG | 0.489122 | 1.4:-87877625 | MS.gene90823:CDS |
| TATTACCACTTTCAGTGTAG+TGG | 0.493198 | 1.4:-87866948 | MS.gene90823:CDS |
| TCCAAACTCAGATTCAAGCT+TGG | 0.493581 | 1.4:+87866339 | None:intergenic |
| ACTCAAATCAGATCAGGTAT+TGG | 0.495936 | 1.4:-87866380 | MS.gene90823:CDS |
| ACCTTCACTCAAATCAGATC+AGG | 0.497789 | 1.4:-87866386 | MS.gene90823:CDS |
| TTAAAAGTTCGCGTGACTAA+AGG | 0.500180 | 1.4:-87870859 | MS.gene90823:CDS |
| GAGTTCAGTTGCTTAGGAGA+TGG | 0.504417 | 1.4:-87877659 | MS.gene90823:CDS |
| GGAAAGTTTCTAACCAAAGA+AGG | 0.507071 | 1.4:+87877525 | None:intergenic |
| AGGTGGTGAAACTGGTGAAA+AGG | 0.507701 | 1.4:-87870839 | MS.gene90823:CDS |
| TGAAGCTCCAAACGAGGAAG+AGG | 0.509005 | 1.4:-87875715 | MS.gene90823:CDS |
| TCTTCCTCAAGATTTCTCCT+TGG | 0.509071 | 1.4:+87867311 | None:intergenic |
| AAAAGCGTATTTCTGACAAC+AGG | 0.513459 | 1.4:-87872447 | MS.gene90823:intron |
| GATTAGAATTTGTTCCAGAC+TGG | 0.514478 | 1.4:-87873240 | MS.gene90823:CDS |
| TGCACAGACAGTCAAAAGAT+TGG | 0.515781 | 1.4:-87877715 | MS.gene90823:CDS |
| AAGCTACCAAGATGAAGTAC+TGG | 0.518951 | 1.4:-87875372 | MS.gene90823:intron |
| TTGTCGGGAGCTTCGGCTGA+AGG | 0.519241 | 1.4:-87877609 | MS.gene90823:CDS |
| GGAGGGTATAACACTATCAA+TGG | 0.520798 | 1.4:-87876534 | MS.gene90823:intron |
| ACCTCTGAGTCAAATTCTTG+AGG | 0.526194 | 1.4:+87867592 | None:intergenic |
| CTGCTGCTCAAGCACGATTG+TGG | 0.526248 | 1.4:-87868886 | MS.gene90823:CDS |
| GGAAGAGAGAGACCAGTTTG+AGG | 0.527497 | 1.4:-87868855 | MS.gene90823:CDS |
| CAGTGAGATAACAACTTCAC+AGG | 0.527733 | 1.4:-87874169 | MS.gene90823:CDS |
| TCAGCTTCTTACTACTTACC+AGG | 0.534463 | 1.4:-87867779 | MS.gene90823:intron |
| GTTATCCACTACACTGAAAG+TGG | 0.538687 | 1.4:+87866943 | None:intergenic |
| AGAATTTGTTCCAGACTGGA+AGG | 0.543034 | 1.4:-87873236 | MS.gene90823:CDS |
| AGACTCACCCAAACATCTCC+AGG | 0.544973 | 1.4:+87875682 | None:intergenic |
| ATGTTTCAGTCTTCACAGGT+GGG | 0.545766 | 1.4:+87866506 | None:intergenic |
| TTGCACAACGTGCCATCACT+GGG | 0.552720 | 1.4:-87875010 | MS.gene90823:CDS |
| TGAATCCTCAGTATCTGCAC+TGG | 0.552752 | 1.4:+87867346 | None:intergenic |
| GGTAATGTTTCAGTCTTCAC+AGG | 0.553096 | 1.4:+87866502 | None:intergenic |
| AATTTACAATGCGATCATGA+AGG | 0.555854 | 1.4:+87877948 | None:intergenic |
| CCCAAACATCTCCAGGAGAA+GGG | 0.556829 | 1.4:+87875689 | None:intergenic |
| GTAAGTAGTAAGAAGCTGAA+TGG | 0.557069 | 1.4:+87867783 | None:intergenic |
| CAGGCTTTAAAAGTTGCACT+CGG | 0.560691 | 1.4:-87873266 | MS.gene90823:CDS |
| GCTTGAATCTGAGTTTGGAA+AGG | 0.561070 | 1.4:-87866335 | MS.gene90823:CDS |
| ACCCAAACATCTCCAGGAGA+AGG | 0.564495 | 1.4:+87875688 | None:intergenic |
| GTCAACAAAGCCGTCGAGGT+CGG | 0.568463 | 1.4:-87878061 | MS.gene90823:CDS |
| TCTTCAAAGTCAGGCACTGG+AGG | 0.570285 | 1.4:-87876552 | MS.gene90823:CDS |
| ATTCACAAGTATTAAGTCCA+AGG | 0.573750 | 1.4:-87867328 | MS.gene90823:CDS |
| AGCACGATTGTGGAACGTGA+GGG | 0.577368 | 1.4:-87868876 | MS.gene90823:CDS |
| AATGTTTCAGTCTTCACAGG+TGG | 0.579834 | 1.4:+87866505 | None:intergenic |
| CTTCAAAGTCAGGCACTGGA+GGG | 0.580760 | 1.4:-87876551 | MS.gene90823:CDS |
| TAAATAGGTTGACAAGCTGA+AGG | 0.582137 | 1.4:-87872509 | MS.gene90823:intron |
| GGCTTGTTGAACGACGGTGT+CGG | 0.584473 | 1.4:+87878000 | None:intergenic |
| GGAAACAGAAGCAACCCTAC+AGG | 0.586700 | 1.4:-87874112 | MS.gene90823:intron |
| GTTCTTGTTGCCGACCTCGA+CGG | 0.591608 | 1.4:+87878051 | None:intergenic |
| TGTCTCTGTCTTTGAAAACT+CGG | 0.592272 | 1.4:+87866426 | None:intergenic |
| GAGCTTCTTCCTAAGACTAG+AGG | 0.596775 | 1.4:+87874191 | None:intergenic |
| TACAACAGAACACACCTGTA+GGG | 0.597918 | 1.4:+87874098 | None:intergenic |
| AAATCAATTCTGATCTCGCA+AGG | 0.602182 | 1.4:-87874983 | MS.gene90823:intron |
| AAAGTTCGCGTGACTAAAGG+TGG | 0.602456 | 1.4:-87870856 | MS.gene90823:CDS |
| GGATCTTAGCCACGATGACA+TGG | 0.603066 | 1.4:+87878087 | None:intergenic |
| AAGTCCAAGGAGAAATCTTG+AGG | 0.609204 | 1.4:-87867315 | MS.gene90823:CDS |
| CCTTAATATCTTCAACAGCA+AGG | 0.610486 | 1.4:+87877562 | None:intergenic |
| GTTCCAATATGGTTAATACA+AGG | 0.611572 | 1.4:+87867627 | None:intergenic |
| CGCCGTCAACAAAGCCGTCG+AGG | 0.612660 | 1.4:-87878065 | MS.gene90823:CDS |
| ACCTGATCTGATTTGAGTGA+AGG | 0.615572 | 1.4:+87866385 | None:intergenic |
| ATATTTGACCTATGAAGCCA+AGG | 0.617510 | 1.4:-87867288 | MS.gene90823:intron |
| GTACCTCCAACTGAAGCAGA+AGG | 0.621842 | 1.4:+87866448 | None:intergenic |
| ACCTCAAGAATTTGACTCAG+AGG | 0.624174 | 1.4:-87867593 | MS.gene90823:intron |
| GACACCGTCGTTCAACAAGC+CGG | 0.625021 | 1.4:-87877998 | MS.gene90823:CDS |
| AATTGATTATAAAGCTGCTG+AGG | 0.625723 | 1.4:-87874133 | MS.gene90823:CDS |
| AAGCACGATTGTGGAACGTG+AGG | 0.636747 | 1.4:-87868877 | MS.gene90823:CDS |
| CCAACTGAAGCAGAAGGTGA+AGG | 0.636940 | 1.4:+87866454 | None:intergenic |
| TGAAACTGGTGAAAAGGAGA+AGG | 0.639219 | 1.4:-87870833 | MS.gene90823:intron |
| GACAACCAGTGCAGATACTG+AGG | 0.645584 | 1.4:-87867351 | MS.gene90823:CDS |
| TTGACCGGCTTGTTGAACGA+CGG | 0.661518 | 1.4:+87877994 | None:intergenic |
| CTAACCAAAGAAGGTCTCTG+TGG | 0.664488 | 1.4:+87877534 | None:intergenic |
| AGTGAGATAACAACTTCACA+GGG | 0.666818 | 1.4:-87874168 | MS.gene90823:CDS |
| TGTTTGTCTACAGAAAGAGT+TGG | 0.668783 | 1.4:-87867652 | MS.gene90823:intron |
| GATTATTGAAGCTCCAAACG+AGG | 0.672469 | 1.4:-87875721 | MS.gene90823:CDS |
| CTCGACGGCTTTGTTGACGG+CGG | 0.681932 | 1.4:+87878066 | None:intergenic |
| TGTTCTTTAGGTGAAGCGAG+AGG | 0.683211 | 1.4:-87875045 | MS.gene90823:intron |
| TACTCAAGATTACTCAACAG+AGG | 0.683783 | 1.4:-87866308 | MS.gene90823:CDS |
| AAGCAATGGAGACTCTCCTG+AGG | 0.710271 | 1.4:-87873189 | MS.gene90823:CDS |
| AATCAGATGTCATCAAAACG+TGG | 0.712961 | 1.4:-87868644 | MS.gene90823:CDS |
| TGAGATAACAACTTCACAGG+GGG | 0.718246 | 1.4:-87874166 | MS.gene90823:CDS |
| GTATCGAAACCATGTCATCG+TGG | 0.720695 | 1.4:-87878096 | None:intergenic |
| TGATGAATTGGAGAGACACG+AGG | 0.721987 | 1.4:-87867824 | MS.gene90823:CDS |
| GAAGCTGCTATCTCGCATCG+AGG | 0.750129 | 1.4:-87877690 | MS.gene90823:CDS |
| GTGAGATAACAACTTCACAG+GGG | 0.793162 | 1.4:-87874167 | MS.gene90823:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 87866246 | 87878107 | 87866246 | ID=MS.gene90823 |
| chr1.4 | mRNA | 87866246 | 87878107 | 87866246 | ID=MS.gene90823.t1;Parent=MS.gene90823 |
| chr1.4 | exon | 87877955 | 87878107 | 87877955 | ID=MS.gene90823.t1.exon1;Parent=MS.gene90823.t1 |
| chr1.4 | CDS | 87877955 | 87878107 | 87877955 | ID=cds.MS.gene90823.t1;Parent=MS.gene90823.t1 |
| chr1.4 | exon | 87877539 | 87877760 | 87877539 | ID=MS.gene90823.t1.exon2;Parent=MS.gene90823.t1 |
| chr1.4 | CDS | 87877539 | 87877760 | 87877539 | ID=cds.MS.gene90823.t1;Parent=MS.gene90823.t1 |
| chr1.4 | exon | 87876535 | 87876630 | 87876535 | ID=MS.gene90823.t1.exon3;Parent=MS.gene90823.t1 |
| chr1.4 | CDS | 87876535 | 87876630 | 87876535 | ID=cds.MS.gene90823.t1;Parent=MS.gene90823.t1 |
| chr1.4 | exon | 87875690 | 87875742 | 87875690 | ID=MS.gene90823.t1.exon4;Parent=MS.gene90823.t1 |
| chr1.4 | CDS | 87875690 | 87875742 | 87875690 | ID=cds.MS.gene90823.t1;Parent=MS.gene90823.t1 |
| chr1.4 | exon | 87875373 | 87875469 | 87875373 | ID=MS.gene90823.t1.exon5;Parent=MS.gene90823.t1 |
| chr1.4 | CDS | 87875373 | 87875469 | 87875373 | ID=cds.MS.gene90823.t1;Parent=MS.gene90823.t1 |
| chr1.4 | exon | 87874984 | 87875057 | 87874984 | ID=MS.gene90823.t1.exon6;Parent=MS.gene90823.t1 |
| chr1.4 | CDS | 87874984 | 87875057 | 87874984 | ID=cds.MS.gene90823.t1;Parent=MS.gene90823.t1 |
| chr1.4 | exon | 87874113 | 87874227 | 87874113 | ID=MS.gene90823.t1.exon7;Parent=MS.gene90823.t1 |
| chr1.4 | CDS | 87874113 | 87874227 | 87874113 | ID=cds.MS.gene90823.t1;Parent=MS.gene90823.t1 |
| chr1.4 | exon | 87873175 | 87873285 | 87873175 | ID=MS.gene90823.t1.exon8;Parent=MS.gene90823.t1 |
| chr1.4 | CDS | 87873175 | 87873285 | 87873175 | ID=cds.MS.gene90823.t1;Parent=MS.gene90823.t1 |
| chr1.4 | exon | 87872448 | 87872524 | 87872448 | ID=MS.gene90823.t1.exon9;Parent=MS.gene90823.t1 |
| chr1.4 | CDS | 87872448 | 87872524 | 87872448 | ID=cds.MS.gene90823.t1;Parent=MS.gene90823.t1 |
| chr1.4 | exon | 87870834 | 87870900 | 87870834 | ID=MS.gene90823.t1.exon10;Parent=MS.gene90823.t1 |
| chr1.4 | CDS | 87870834 | 87870900 | 87870834 | ID=cds.MS.gene90823.t1;Parent=MS.gene90823.t1 |
| chr1.4 | exon | 87870005 | 87870070 | 87870005 | ID=MS.gene90823.t1.exon11;Parent=MS.gene90823.t1 |
| chr1.4 | CDS | 87870005 | 87870070 | 87870005 | ID=cds.MS.gene90823.t1;Parent=MS.gene90823.t1 |
| chr1.4 | exon | 87868817 | 87868924 | 87868817 | ID=MS.gene90823.t1.exon12;Parent=MS.gene90823.t1 |
| chr1.4 | CDS | 87868817 | 87868924 | 87868817 | ID=cds.MS.gene90823.t1;Parent=MS.gene90823.t1 |
| chr1.4 | exon | 87868576 | 87868706 | 87868576 | ID=MS.gene90823.t1.exon13;Parent=MS.gene90823.t1 |
| chr1.4 | CDS | 87868576 | 87868706 | 87868576 | ID=cds.MS.gene90823.t1;Parent=MS.gene90823.t1 |
| chr1.4 | exon | 87867780 | 87867846 | 87867780 | ID=MS.gene90823.t1.exon14;Parent=MS.gene90823.t1 |
| chr1.4 | CDS | 87867780 | 87867846 | 87867780 | ID=cds.MS.gene90823.t1;Parent=MS.gene90823.t1 |
| chr1.4 | exon | 87867594 | 87867661 | 87867594 | ID=MS.gene90823.t1.exon15;Parent=MS.gene90823.t1 |
| chr1.4 | CDS | 87867594 | 87867661 | 87867594 | ID=cds.MS.gene90823.t1;Parent=MS.gene90823.t1 |
| chr1.4 | exon | 87867289 | 87867382 | 87867289 | ID=MS.gene90823.t1.exon16;Parent=MS.gene90823.t1 |
| chr1.4 | CDS | 87867289 | 87867382 | 87867289 | ID=cds.MS.gene90823.t1;Parent=MS.gene90823.t1 |
| chr1.4 | exon | 87866902 | 87866972 | 87866902 | ID=MS.gene90823.t1.exon17;Parent=MS.gene90823.t1 |
| chr1.4 | CDS | 87866902 | 87866972 | 87866902 | ID=cds.MS.gene90823.t1;Parent=MS.gene90823.t1 |
| chr1.4 | exon | 87866246 | 87866624 | 87866246 | ID=MS.gene90823.t1.exon18;Parent=MS.gene90823.t1 |
| chr1.4 | CDS | 87866246 | 87866624 | 87866246 | ID=cds.MS.gene90823.t1;Parent=MS.gene90823.t1 |
| Gene Sequence |
| Protein sequence |
