AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280007491.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007491.01.T01 MTR_2g026530 99.005 201 2 0 1 201 1 201 1.32e-144 400
MsG0280007491.01.T01 MTR_2g026530 98.895 181 2 0 21 201 1 181 8.94e-128 357
MsG0280007491.01.T01 MTR_0693s0030 29.379 177 120 2 24 195 1 177 5.82e-24 94.0
MsG0280007491.01.T01 MTR_3g064310 32.317 164 101 3 28 191 42 195 3.97e-21 87.4
MsG0280007491.01.T01 MTR_5g076480 31.098 164 104 3 28 191 34 188 6.60e-20 84.0
MsG0280007491.01.T01 MTR_0004s0210 30.822 146 85 3 29 171 6 138 4.25e-15 70.1
MsG0280007491.01.T01 MTR_0160s0040 26.316 171 116 4 28 198 19 179 9.10e-14 67.0
MsG0280007491.01.T01 MTR_8g013900 29.814 161 104 3 26 177 33 193 2.58e-12 63.5
MsG0280007491.01.T01 MTR_7g011090 26.744 172 118 3 20 189 20 185 6.30e-12 62.0
MsG0280007491.01.T01 MTR_7g108130 27.895 190 122 6 9 191 5 186 1.42e-11 61.2
MsG0280007491.01.T01 MTR_4g118800 31.410 156 104 3 32 187 29 181 2.38e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007491.01.T01 AT2G35760 68.718 195 60 1 1 195 1 194 1.91e-87 256
MsG0280007491.01.T01 AT4G16442 61.798 178 68 0 21 198 1 178 1.70e-79 235
MsG0280007491.01.T01 AT4G25830 35.294 170 104 3 27 195 3 167 3.03e-23 91.7
MsG0280007491.01.T01 AT1G17200 30.814 172 111 3 28 199 30 193 2.75e-22 90.1
MsG0280007491.01.T01 AT3G14380 29.240 171 103 3 23 188 15 172 5.60e-15 70.1
MsG0280007491.01.T01 AT4G15610 31.098 164 97 3 9 167 16 168 2.83e-14 68.6
MsG0280007491.01.T01 AT5G15290 28.000 150 103 2 23 170 20 166 9.63e-14 67.0
MsG0280007491.01.T01 AT4G15630 27.011 174 120 2 17 187 20 189 1.45e-11 61.2
MsG0280007491.01.T01 AT1G03700 29.710 138 87 2 29 166 7 134 2.13e-11 60.1
MsG0280007491.01.T01 AT4G03540 29.839 124 77 2 48 171 26 139 6.35e-11 58.9

Find 49 sgRNAs with CRISPR-Local

Find 131 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAATGATTCATGTAATTAT+AGG 0.216861 2:+16167411 MsG0280007491.01.T01:five_prime_UTR
GGTCAAGAATGGAGGCTTCT+AGG 0.310942 2:-16167478 None:intergenic
TCATCCATTGCAATTGTTCC+TGG 0.311139 2:-16169499 None:intergenic
AGGTTTGTGAATCTTGGTTT+AGG 0.330696 2:+16167754 MsG0280007491.01.T01:CDS
AAATTGCAAAACAACCAAAT+TGG 0.332368 2:-16169752 None:intergenic
ATGTTCTAATGCTTATTAAT+TGG 0.333637 2:+16169860 MsG0280007491.01.T01:three_prime_UTR
ACATCTCAAACCTTGAATTA+AGG 0.337420 2:-16168120 None:intergenic
TAATAAACTTTACAGGTTCC+TGG 0.340752 2:+16168067 MsG0280007491.01.T01:intron
TTCAGTCTCTTCCGTTTGTA+TGG 0.355002 2:+16169626 MsG0280007491.01.T01:CDS
AATTACATGAATCATTAAAT+AGG 0.356990 2:-16167406 None:intergenic
TGTGTAGTGAGTATGATTAA+AGG 0.372404 2:+16168140 MsG0280007491.01.T01:CDS
TTAGTATAAGTTAATATCAT+AGG 0.383186 2:+16169682 MsG0280007491.01.T01:three_prime_UTR
ATGTTTGTACTATGATAAAC+AGG 0.392867 2:-16167688 None:intergenic
ATCTGCTGTGTTTGCAAAGA+TGG 0.404743 2:+16169475 MsG0280007491.01.T01:CDS
TGATAAACAGGAACAGTTCC+AGG 0.407224 2:-16167676 None:intergenic
GCTGGTTACTCCTTAATTCA+AGG 0.432706 2:+16168110 MsG0280007491.01.T01:CDS
TTTCAACAAGCCCTTAGCTT+GGG 0.448248 2:+16168172 MsG0280007491.01.T01:CDS
GAATTTAGCTTTCTTCTGAA+TGG 0.449071 2:-16167830 None:intergenic
AGAAAATATAGCCCAAGCTA+AGG 0.484898 2:-16168183 None:intergenic
TTCTGCAACCAAGTTGGAGA+AGG 0.490439 2:+16169545 MsG0280007491.01.T01:CDS
TAGCTAACCCTTCTCCAACT+TGG 0.494841 2:-16169553 None:intergenic
ATGAAGATATGCAATATGTA+TGG 0.503142 2:+16169518 MsG0280007491.01.T01:CDS
GTTGCTAATGCTATAACTGC+TGG 0.511879 2:+16168092 MsG0280007491.01.T01:CDS
GTGTGACAAGTGGTCAAGAA+TGG 0.513241 2:-16167489 None:intergenic
AGCTAAATTCACTGACATGA+AGG 0.513279 2:+16167843 MsG0280007491.01.T01:CDS
GGAAAATTCTGCAACCAAGT+TGG 0.516285 2:+16169539 MsG0280007491.01.T01:CDS
CATGAAAGTGTTGGATAGGA+GGG 0.520852 2:+16167708 MsG0280007491.01.T01:CDS
CAAACATGAAAGTGTTGGAT+AGG 0.521116 2:+16167704 MsG0280007491.01.T01:CDS
TTGGGTGTAGGTGTTAGTCC+TGG 0.521914 2:+16167658 MsG0280007491.01.T01:CDS
ACATGAAAGTGTTGGATAGG+AGG 0.523051 2:+16167707 MsG0280007491.01.T01:CDS
GAGGGTTAGAATAACTGAGT+TGG 0.530374 2:+16167726 MsG0280007491.01.T01:CDS
GGCTTCTAGGACAGAGAAAG+AGG 0.531910 2:-16167465 None:intergenic
ATGATACTACCACCATACTA+AGG 0.534220 2:-16169592 None:intergenic
TTTGGTTAGCCTTAGTATGG+TGG 0.542187 2:+16169583 MsG0280007491.01.T01:CDS
GAAAATATAGCCCAAGCTAA+GGG 0.555703 2:-16168182 None:intergenic
AAAATGAGTTACTTGGGTGT+AGG 0.573937 2:+16167646 MsG0280007491.01.T01:exon
TCTGCAACCAAGTTGGAGAA+GGG 0.578467 2:+16169546 MsG0280007491.01.T01:CDS
AGTCTCTTCCGTTTGTATGG+TGG 0.581332 2:+16169629 MsG0280007491.01.T01:CDS
TCTGCTGTGTTTGCAAAGAT+GGG 0.593013 2:+16169476 MsG0280007491.01.T01:CDS
TGTGTTTGCAAAGATGGGCC+AGG 0.595653 2:+16169481 MsG0280007491.01.T01:CDS
ATGTATGTAGTTGTAGTGAA+TGG 0.599094 2:+16169794 MsG0280007491.01.T01:three_prime_UTR
TAGTACAAACATGAAAGTGT+TGG 0.606008 2:+16167699 MsG0280007491.01.T01:CDS
TGGGCCAGGAACAATTGCAA+TGG 0.614108 2:+16169495 MsG0280007491.01.T01:CDS
TGACAAGTGGTCAAGAATGG+AGG 0.634675 2:-16167486 None:intergenic
AAGAAAACAGTGGATTTGAG+TGG 0.671545 2:-16169727 None:intergenic
CAAATTGGCCAAGAAAACAG+TGG 0.680213 2:-16169737 None:intergenic
GGTAATGGCATATATAACAG+TGG 0.698046 2:+16169430 MsG0280007491.01.T01:intron
TTATAGCATTAGCAACAACC+AGG 0.720662 2:-16168085 None:intergenic
ATGCTGCAAAGTGTGACAAG+TGG 0.721365 2:-16167499 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAACATGTTTATTAAAATA+AGG - Chr2:16169060-16169079 None:intergenic 10.0%
!! ATACATACATATAAAAGTTA+TGG - Chr2:16169407-16169426 None:intergenic 15.0%
!! GATGAAAAAAATAGTTATAA+TGG - Chr2:16167984-16168003 None:intergenic 15.0%
!! TTAATGATTCATGTAATTAT+AGG + Chr2:16167411-16167430 MsG0280007491.01.T01:five_prime_UTR 15.0%
!! TTAGTATAAGTTAATATCAT+AGG + Chr2:16169682-16169701 MsG0280007491.01.T01:three_prime_UTR 15.0%
!! TTATTAAAACCATCAAAATT+GGG - Chr2:16168053-16168072 None:intergenic 15.0%
!! TTTATTAAAACCATCAAAAT+TGG - Chr2:16168054-16168073 None:intergenic 15.0%
!!! AATAAATGTATGTTTTATGT+TGG - Chr2:16168940-16168959 None:intergenic 15.0%
!!! TCTGATAAAATTTAAAACAT+TGG - Chr2:16167904-16167923 None:intergenic 15.0%
!! ATGTTCTAATGCTTATTAAT+TGG + Chr2:16169860-16169879 MsG0280007491.01.T01:three_prime_UTR 20.0%
!! TTTCAAACAACAAACTAAAT+AGG - Chr2:16168867-16168886 None:intergenic 20.0%
!!! AAACCCTAAAGATTTTTATA+AGG + Chr2:16169034-16169053 MsG0280007491.01.T01:intron 20.0%
!!! AATAGATATGCTCTAAAAAA+TGG + Chr2:16168981-16169000 MsG0280007491.01.T01:intron 20.0%
!!! ATGGTTTTAATAAACTTTAC+AGG + Chr2:16168060-16168079 MsG0280007491.01.T01:intron 20.0%
!!! CTTATTTTCATAAGCATTTT+AGG - Chr2:16169268-16169287 None:intergenic 20.0%
!!! TTTTCATAAACTCTTCTAAA+TGG + Chr2:16169320-16169339 MsG0280007491.01.T01:intron 20.0%
!!! TTTTTGTTTATAATAGTGAC+TGG + Chr2:16168604-16168623 MsG0280007491.01.T01:intron 20.0%
! AAATTGCAAAACAACCAAAT+TGG - Chr2:16169755-16169774 None:intergenic 25.0%
! AAGAGGTTAAGTAAGAAAAA+AGG - Chr2:16167451-16167470 None:intergenic 25.0%
! AATAAGCCGAAAATAGTTTA+TGG + Chr2:16169282-16169301 MsG0280007491.01.T01:intron 25.0%
! ACCTAATTGATATTGATGTT+AGG + Chr2:16168774-16168793 MsG0280007491.01.T01:intron 25.0%
! ATACTTACTACCATAATTGA+GGG + Chr2:16168822-16168841 MsG0280007491.01.T01:intron 25.0%
! ATGAAGATATGCAATATGTA+TGG + Chr2:16169518-16169537 MsG0280007491.01.T01:CDS 25.0%
! ATGTTTGTACTATGATAAAC+AGG - Chr2:16167691-16167710 None:intergenic 25.0%
! CAACTTATAACTTACGAAAA+CGG - Chr2:16169162-16169181 None:intergenic 25.0%
! CATTCATTAAATGATGTATG+TGG + Chr2:16168529-16168548 MsG0280007491.01.T01:intron 25.0%
! CATTCATTAAATGATGTATG+TGG - Chr2:16168548-16168529 None:intergenic 25.0%
! GCAAAATTAAAAATGCGTAT+TGG + Chr2:16169654-16169673 MsG0280007491.01.T01:CDS 25.0%
! GTTATTAAAAAGTGGGTATA+TGG + Chr2:16168898-16168917 MsG0280007491.01.T01:intron 25.0%
! TAAGGAAAAATGAGTTACTT+GGG + Chr2:16167640-16167659 MsG0280007491.01.T01:exon 25.0%
! TATACTTACTACCATAATTG+AGG + Chr2:16168821-16168840 MsG0280007491.01.T01:intron 25.0%
! TCCTAACATCAATATCAATT+AGG - Chr2:16168778-16168797 None:intergenic 25.0%
! TTAAGGAAAAATGAGTTACT+TGG + Chr2:16167639-16167658 MsG0280007491.01.T01:exon 25.0%
! TTGTGAATTGGACAAAATTA+TGG + Chr2:16168278-16168297 MsG0280007491.01.T01:intron 25.0%
! TTTAGTGTATGTTTGTGAAT+TGG + Chr2:16168266-16168285 MsG0280007491.01.T01:intron 25.0%
!! AAGGCCTTATAAAAATCTTT+AGG - Chr2:16169041-16169060 None:intergenic 25.0%
!! ACATGTCCATAAACTATTTT+CGG - Chr2:16169291-16169310 None:intergenic 25.0%
!! ACTTTTATATGTATGTATGC+AGG + Chr2:16169409-16169428 MsG0280007491.01.T01:intron 25.0%
!! AGGCCTTATAAAAATCTTTA+GGG - Chr2:16169040-16169059 None:intergenic 25.0%
!! ATTAAAAATGCGTATTGGTA+AGG + Chr2:16169659-16169678 MsG0280007491.01.T01:CDS 25.0%
!! TTTTTGCTTATAATAGTGAC+CGG - Chr2:16168494-16168513 None:intergenic 25.0%
!!! AGTTAGTTTTAGAGATTAAG+AGG - Chr2:16168750-16168769 None:intergenic 25.0%
!!! TGTGAGTGTTGTTTTTTTTA+AGG + Chr2:16167622-16167641 MsG0280007491.01.T01:five_prime_UTR 25.0%
!!! TTTGTTGTTTGAAATGAACA+TGG + Chr2:16168873-16168892 MsG0280007491.01.T01:intron 25.0%
ACATCTCAAACCTTGAATTA+AGG - Chr2:16168123-16168142 None:intergenic 30.0%
ACATGGCAGTTATTAAAAAG+TGG + Chr2:16168890-16168909 MsG0280007491.01.T01:intron 30.0%
AGGTGAGTTTGAAAAAATCT+CGG - Chr2:16168333-16168352 None:intergenic 30.0%
ATATGTATGTATGCAGGTAA+TGG + Chr2:16169415-16169434 MsG0280007491.01.T01:intron 30.0%
ATGGTAGTAAGTATACCTTA+TGG - Chr2:16168816-16168835 None:intergenic 30.0%
ATGTATGTAGTTGTAGTGAA+TGG + Chr2:16169794-16169813 MsG0280007491.01.T01:three_prime_UTR 30.0%
CAAAAAAAAATCTTCAGGGT+TGG - Chr2:16169009-16169028 None:intergenic 30.0%
CATGGCAGTTATTAAAAAGT+GGG + Chr2:16168891-16168910 MsG0280007491.01.T01:intron 30.0%
CCTCCAAAAAAAAATCTTCA+GGG - Chr2:16169013-16169032 None:intergenic 30.0%
CTTATTTCCAACAACTGTTT+AGG - Chr2:16169199-16169218 None:intergenic 30.0%
GACGTAAAAGTTAGTTATAC+TGG + Chr2:16167922-16167941 MsG0280007491.01.T01:intron 30.0%
TAATAAACTTTACAGGTTCC+TGG + Chr2:16168067-16168086 MsG0280007491.01.T01:intron 30.0%
TACTTACTACCATAATTGAG+GGG + Chr2:16168823-16168842 MsG0280007491.01.T01:intron 30.0%
TGATATTGATGTTAGGACTA+AGG + Chr2:16168781-16168800 MsG0280007491.01.T01:intron 30.0%
TGTGTAGTGAGTATGATTAA+AGG + Chr2:16168140-16168159 MsG0280007491.01.T01:CDS 30.0%
TGTTTATAATAGTGACTGGA+GGG + Chr2:16168608-16168627 MsG0280007491.01.T01:intron 30.0%
TTGTTTATAATAGTGACTGG+AGG + Chr2:16168607-16168626 MsG0280007491.01.T01:intron 30.0%
! GAATATTGTCCCAATTTTGA+TGG + Chr2:16168041-16168060 MsG0280007491.01.T01:intron 30.0%
! TAGTACAAACATGAAAGTGT+TGG + Chr2:16167699-16167718 MsG0280007491.01.T01:CDS 30.0%
!! GAATTTAGCTTTCTTCTGAA+TGG - Chr2:16167833-16167852 None:intergenic 30.0%
!! TGGTTGTTTTGCAATTTACA+AGG + Chr2:16169758-16169777 MsG0280007491.01.T01:three_prime_UTR 30.0%
!! TTATTGCTTGTTTGTTATCG+AGG - Chr2:16168353-16168372 None:intergenic 30.0%
!!! ATTTTTGGTTAGCCTTAGTA+TGG + Chr2:16169580-16169599 MsG0280007491.01.T01:CDS 30.0%
!!! CAACCCTGAAGATTTTTTTT+TGG + Chr2:16169007-16169026 MsG0280007491.01.T01:intron 30.0%
!!! CCTGAAGATTTTTTTTTGGA+GGG + Chr2:16169011-16169030 MsG0280007491.01.T01:intron 30.0%
AAAATGAGTTACTTGGGTGT+AGG + Chr2:16167646-16167665 MsG0280007491.01.T01:exon 35.0%
AAGTGGGTATATGGTAGATA+TGG + Chr2:16168907-16168926 MsG0280007491.01.T01:intron 35.0%
AGAAAATATAGCCCAAGCTA+AGG - Chr2:16168186-16168205 None:intergenic 35.0%
AGCTAAATTCACTGACATGA+AGG + Chr2:16167843-16167862 MsG0280007491.01.T01:CDS 35.0%
AGGTTTGTGAATCTTGGTTT+AGG + Chr2:16167754-16167773 MsG0280007491.01.T01:CDS 35.0%
ATGATACTACCACCATACTA+AGG - Chr2:16169595-16169614 None:intergenic 35.0%
ATTGTGATACCCCTCAATTA+TGG - Chr2:16168835-16168854 None:intergenic 35.0%
CATCTATCCTAAACAGTTGT+TGG + Chr2:16169189-16169208 MsG0280007491.01.T01:intron 35.0%
CCCTCCAAAAAAAAATCTTC+AGG - Chr2:16169014-16169033 None:intergenic 35.0%
CTAAGGAATCATTCACCATA+AGG + Chr2:16168798-16168817 MsG0280007491.01.T01:intron 35.0%
CTTGACATTATAGCGAATCA+TGG + Chr2:16168017-16168036 MsG0280007491.01.T01:intron 35.0%
GAAAATATAGCCCAAGCTAA+GGG - Chr2:16168185-16168204 None:intergenic 35.0%
TGCTTGATAAGACAAACTTG+AGG - Chr2:16168707-16168726 None:intergenic 35.0%
TTATAGCATTAGCAACAACC+AGG - Chr2:16168088-16168107 None:intergenic 35.0%
TTGATCAATTATACACCCTC+CGG + Chr2:16168472-16168491 MsG0280007491.01.T01:intron 35.0%
! AAGAAAACAGTGGATTTGAG+TGG - Chr2:16169730-16169749 None:intergenic 35.0%
! ACTCAAATCCACTGTTTTCT+TGG + Chr2:16169729-16169748 MsG0280007491.01.T01:three_prime_UTR 35.0%
! CTTCTAAATGGTCTTACAAG+TGG + Chr2:16169332-16169351 MsG0280007491.01.T01:intron 35.0%
! GGTAATGGCATATATAACAG+TGG + Chr2:16169430-16169449 MsG0280007491.01.T01:intron 35.0%
! TTTTGCTACCACCATACAAA+CGG - Chr2:16169640-16169659 None:intergenic 35.0%
!! CAAACATGAAAGTGTTGGAT+AGG + Chr2:16167704-16167723 MsG0280007491.01.T01:CDS 35.0%
!! TTAGCTTGGGCTATATTTTC+TGG + Chr2:16168185-16168204 MsG0280007491.01.T01:CDS 35.0%
!!! CCCTGAAGATTTTTTTTTGG+AGG + Chr2:16169010-16169029 MsG0280007491.01.T01:intron 35.0%
!!! GAATAACTGAGTTGGTTTTG+AGG + Chr2:16167734-16167753 MsG0280007491.01.T01:CDS 35.0%
!!! GTTTTGAGGTTTGTGAATCT+TGG + Chr2:16167748-16167767 MsG0280007491.01.T01:CDS 35.0%
ATCTGCTGTGTTTGCAAAGA+TGG + Chr2:16169475-16169494 MsG0280007491.01.T01:CDS 40.0%
CAAATTGGCCAAGAAAACAG+TGG - Chr2:16169740-16169759 None:intergenic 40.0%
GAGGGTTAGAATAACTGAGT+TGG + Chr2:16167726-16167745 MsG0280007491.01.T01:CDS 40.0%
GCTGGTTACTCCTTAATTCA+AGG + Chr2:16168110-16168129 MsG0280007491.01.T01:CDS 40.0%
GGAAAATTCTGCAACCAAGT+TGG + Chr2:16169539-16169558 MsG0280007491.01.T01:CDS 40.0%
GTTGCTAATGCTATAACTGC+TGG + Chr2:16168092-16168111 MsG0280007491.01.T01:CDS 40.0%
TCATCCATTGCAATTGTTCC+TGG - Chr2:16169502-16169521 None:intergenic 40.0%
TCTGCTGTGTTTGCAAAGAT+GGG + Chr2:16169476-16169495 MsG0280007491.01.T01:CDS 40.0%
TGATAAACAGGAACAGTTCC+AGG - Chr2:16167679-16167698 None:intergenic 40.0%
TGCTTATAATAGTGACCGGA+GGG - Chr2:16168490-16168509 None:intergenic 40.0%
TTAGAGATTAAGAGGTCCCA+CGG - Chr2:16168742-16168761 None:intergenic 40.0%
TTCAGTCTCTTCCGTTTGTA+TGG + Chr2:16169626-16169645 MsG0280007491.01.T01:CDS 40.0%
TTGCTTATAATAGTGACCGG+AGG - Chr2:16168491-16168510 None:intergenic 40.0%
TTTCAACAAGCCCTTAGCTT+GGG + Chr2:16168172-16168191 MsG0280007491.01.T01:CDS 40.0%
! CACTGTTTTCTTGGCCAATT+TGG + Chr2:16169738-16169757 MsG0280007491.01.T01:three_prime_UTR 40.0%
! TTTTCAACAAGCCCTTAGCT+TGG + Chr2:16168171-16168190 MsG0280007491.01.T01:CDS 40.0%
!! ACATGAAAGTGTTGGATAGG+AGG + Chr2:16167707-16167726 MsG0280007491.01.T01:CDS 40.0%
!! CATGAAAGTGTTGGATAGGA+GGG + Chr2:16167708-16167727 MsG0280007491.01.T01:CDS 40.0%
!! GGCTATATTTTCTGGTGATC+AGG + Chr2:16168193-16168212 MsG0280007491.01.T01:CDS 40.0%
!! TTTGGTTAGCCTTAGTATGG+TGG + Chr2:16169583-16169602 MsG0280007491.01.T01:CDS 40.0%
!!! AGGGTTAGCTAGTGCATTTT+TGG + Chr2:16169565-16169584 MsG0280007491.01.T01:CDS 40.0%
!!! GCGTCTGTTTTTAGTGTACA+AGG + Chr2:16168391-16168410 MsG0280007491.01.T01:intron 40.0%
AAGCAATGTAACCAGTACCG+TGG + Chr2:16168722-16168741 MsG0280007491.01.T01:intron 45.0%
AGCAATGTAACCAGTACCGT+GGG + Chr2:16168723-16168742 MsG0280007491.01.T01:intron 45.0%
AGTCTCTTCCGTTTGTATGG+TGG + Chr2:16169629-16169648 MsG0280007491.01.T01:CDS 45.0%
ATGCTGCAAAGTGTGACAAG+TGG - Chr2:16167502-16167521 None:intergenic 45.0%
GTGTGACAAGTGGTCAAGAA+TGG - Chr2:16167492-16167511 None:intergenic 45.0%
TAGCTAACCCTTCTCCAACT+TGG - Chr2:16169556-16169575 None:intergenic 45.0%
TGACAAGTGGTCAAGAATGG+AGG - Chr2:16167489-16167508 None:intergenic 45.0%
! TCTGCAACCAAGTTGGAGAA+GGG + Chr2:16169546-16169565 MsG0280007491.01.T01:CDS 45.0%
! TTCTGCAACCAAGTTGGAGA+AGG + Chr2:16169545-16169564 MsG0280007491.01.T01:CDS 45.0%
ATTAAGAGGTCCCACGGTAC+TGG - Chr2:16168736-16168755 None:intergenic 50.0%
GGTCAAGAATGGAGGCTTCT+AGG - Chr2:16167481-16167500 None:intergenic 50.0%
TGGGCCAGGAACAATTGCAA+TGG + Chr2:16169495-16169514 MsG0280007491.01.T01:CDS 50.0%
TGTGTTTGCAAAGATGGGCC+AGG + Chr2:16169481-16169500 MsG0280007491.01.T01:CDS 50.0%
TTGGGTGTAGGTGTTAGTCC+TGG + Chr2:16167658-16167677 MsG0280007491.01.T01:CDS 50.0%
!! GGCTTCTAGGACAGAGAAAG+AGG - Chr2:16167468-16167487 None:intergenic 50.0%
Chromosome Type Strat End Strand Name
Chr2 gene 16167407 16169909 16167407 ID=MsG0280007491.01;Name=MsG0280007491.01
Chr2 mRNA 16167407 16169909 16167407 ID=MsG0280007491.01.T01;Parent=MsG0280007491.01;Name=MsG0280007491.01.T01;_AED=0.49;_eAED=0.49;_QI=242|1|1|1|1|1|3|230|201
Chr2 exon 16167407 16167872 16167407 ID=MsG0280007491.01.T01:exon:1167;Parent=MsG0280007491.01.T01
Chr2 exon 16168082 16168214 16168082 ID=MsG0280007491.01.T01:exon:1168;Parent=MsG0280007491.01.T01
Chr2 exon 16169431 16169909 16169431 ID=MsG0280007491.01.T01:exon:1169;Parent=MsG0280007491.01.T01
Chr2 five_prime_UTR 16167407 16167648 16167407 ID=MsG0280007491.01.T01:five_prime_utr;Parent=MsG0280007491.01.T01
Chr2 CDS 16167649 16167872 16167649 ID=MsG0280007491.01.T01:cds;Parent=MsG0280007491.01.T01
Chr2 CDS 16168082 16168214 16168082 ID=MsG0280007491.01.T01:cds;Parent=MsG0280007491.01.T01
Chr2 CDS 16169431 16169679 16169431 ID=MsG0280007491.01.T01:cds;Parent=MsG0280007491.01.T01
Chr2 three_prime_UTR 16169680 16169909 16169680 ID=MsG0280007491.01.T01:three_prime_utr;Parent=MsG0280007491.01.T01
Gene Sequence

>MsG0280007491.01.T01

ATGAGTTACTTGGGTGTAGGTGTTAGTCCTGGAACTGTTCCTGTTTATCATAGTACAAACATGAAAGTGTTGGATAGGAGGGTTAGAATAACTGAGTTGGTTTTGAGGTTTGTGAATCTTGGTTTAGGAGTTCTTGCTGTTGTTCTTATTGTGACTGATTCACAAGTTAGAGAGTTTTTCACCATTCAGAAGAAAGCTAAATTCACTGACATGAAGGCTTTAGTGTTCCTGGTTGTTGCTAATGCTATAACTGCTGGTTACTCCTTAATTCAAGGTTTGAGATGTGTAGTGAGTATGATTAAAGGAAGTGTGCTTTTCAACAAGCCCTTAGCTTGGGCTATATTTTCTGGTGATCAGGTAATGGCATATATAACAGTGGCAGCAGTGTCAGCTGCAGCACAATCTGCTGTGTTTGCAAAGATGGGCCAGGAACAATTGCAATGGATGAAGATATGCAATATGTATGGAAAATTCTGCAACCAAGTTGGAGAAGGGTTAGCTAGTGCATTTTTGGTTAGCCTTAGTATGGTGGTAGTATCATGTATTTCAGCTTTCAGTCTCTTCCGTTTGTATGGTGGTAGCAAAATTAAAAATGCGTATTGGTAA

Protein sequence

>MsG0280007491.01.T01

MSYLGVGVSPGTVPVYHSTNMKVLDRRVRITELVLRFVNLGLGVLAVVLIVTDSQVREFFTIQKKAKFTDMKALVFLVVANAITAGYSLIQGLRCVVSMIKGSVLFNKPLAWAIFSGDQVMAYITVAAVSAAAQSAVFAKMGQEQLQWMKICNMYGKFCNQVGEGLASAFLVSLSMVVVSCISAFSLFRLYGGSKIKNAYW*