Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0280007491.01.T01 | XP_003594276.1 | 99.005 | 201 | 2 | 0 | 1 | 201 | 1 | 201 | 1.09E-140 | 400 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0280007491.01.T01 | A7R385 | 78.462 | 195 | 42 | 0 | 1 | 195 | 1 | 195 | 2.07E-105 | 304 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0280007491.01.T01 | G7IPB7 | 99.005 | 201 | 2 | 0 | 1 | 201 | 1 | 201 | 5.22e-141 | 400 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0080047790.01 | MsG0280007491.01 | -0.812619 | 3.869828e-51 | 2.472288e-48 |
MsG0080047814.01 | MsG0280007491.01 | 0.871707 | 5.567900e-67 | 2.267952e-63 |
MsG0080048058.01 | MsG0280007491.01 | 0.819148 | 1.352011e-52 | 1.032014e-49 |
MsG0080048383.01 | MsG0280007491.01 | 0.803681 | 3.104227e-49 | 1.569669e-46 |
MsG0080048856.01 | MsG0280007491.01 | 0.837534 | 4.910378e-57 | 6.397599e-54 |
MsG0180000001.01 | MsG0280007491.01 | 0.825297 | 5.061273e-54 | 4.594891e-51 |
MsG0180000023.01 | MsG0280007491.01 | 0.822089 | 2.855173e-53 | 2.365965e-50 |
MsG0180000178.01 | MsG0280007491.01 | 0.807666 | 4.522028e-50 | 2.533592e-47 |
MsG0180000195.01 | MsG0280007491.01 | 0.806084 | 9.767036e-50 | 5.253680e-47 |
MsG0180000295.01 | MsG0280007491.01 | 0.807036 | 6.149480e-50 | 3.389558e-47 |
MsG0180000335.01 | MsG0280007491.01 | 0.801213 | 1.001016e-48 | 4.753491e-46 |
MsG0180000824.01 | MsG0280007491.01 | 0.845282 | 4.475800e-59 | 7.421739e-56 |
MsG0180001117.01 | MsG0280007491.01 | 0.807236 | 5.577469e-50 | 3.090334e-47 |
MsG0180001173.01 | MsG0280007491.01 | 0.801337 | 9.443033e-49 | 4.498180e-46 |
MsG0180001237.01 | MsG0280007491.01 | 0.832948 | 7.062369e-56 | 8.014771e-53 |
MsG0180001566.01 | MsG0280007491.01 | 0.815850 | 7.484466e-52 | 5.218392e-49 |
MsG0180001662.01 | MsG0280007491.01 | 0.804453 | 2.144732e-49 | 1.106226e-46 |
MsG0180003031.01 | MsG0280007491.01 | 0.808947 | 2.411325e-50 | 1.397234e-47 |
MsG0180003371.01 | MsG0280007491.01 | 0.803727 | 3.036528e-49 | 1.537303e-46 |
MsG0180004272.01 | MsG0280007491.01 | 0.807689 | 4.471318e-50 | 2.506717e-47 |
MsG0180004486.01 | MsG0280007491.01 | 0.800212 | 1.602011e-48 | 7.416770e-46 |
MsG0180004748.01 | MsG0280007491.01 | 0.814622 | 1.402940e-51 | 9.460365e-49 |
MsG0180004754.01 | MsG0280007491.01 | 0.834952 | 2.225697e-56 | 2.682389e-53 |
MsG0180004802.01 | MsG0280007491.01 | 0.830057 | 3.638986e-55 | 3.791735e-52 |
MsG0180005049.01 | MsG0280007491.01 | 0.844377 | 7.849470e-59 | 1.264741e-55 |
MsG0180005162.01 | MsG0280007491.01 | 0.812599 | 3.909044e-51 | 2.495995e-48 |
MsG0180005233.01 | MsG0280007491.01 | 0.802328 | 5.909907e-49 | 2.887025e-46 |
MsG0180005250.01 | MsG0280007491.01 | 0.801708 | 7.926478e-49 | 3.811206e-46 |
MsG0180005443.01 | MsG0280007491.01 | 0.801973 | 6.992651e-49 | 3.384822e-46 |
MsG0180005664.01 | MsG0280007491.01 | 0.802945 | 4.408326e-49 | 2.187442e-46 |
MsG0180005763.01 | MsG0280007491.01 | 0.801462 | 8.903728e-49 | 4.254598e-46 |
MsG0180006013.01 | MsG0280007491.01 | 0.802567 | 5.278103e-49 | 2.593876e-46 |
MsG0280006376.01 | MsG0280007491.01 | 0.827524 | 1.492139e-54 | 1.444037e-51 |
MsG0280007491.01 | MsG0280007609.01 | 0.821621 | 3.663860e-53 | 2.995927e-50 |
MsG0280007491.01 | MsG0280007764.01 | 0.827277 | 1.710001e-54 | 1.643171e-51 |
MsG0280007491.01 | MsG0280008614.01 | 0.828549 | 8.452643e-55 | 8.428807e-52 |
MsG0280007491.01 | MsG0280008615.01 | 0.809980 | 1.446846e-50 | 8.617661e-48 |
MsG0280007491.01 | MsG0280008885.01 | 0.818718 | 1.693891e-52 | 1.277735e-49 |
MsG0280007491.01 | MsG0280008909.01 | 0.819163 | 1.341344e-52 | 1.024299e-49 |
MsG0280007491.01 | MsG0280009748.01 | 0.817394 | 3.373934e-52 | 2.454165e-49 |
MsG0280007491.01 | MsG0280010002.01 | 0.813228 | 2.847027e-51 | 1.848474e-48 |
MsG0280007491.01 | MsG0280010491.01 | 0.835820 | 1.342896e-56 | 1.661041e-53 |
MsG0280007491.01 | MsG0280010980.01 | 0.808367 | 3.206466e-50 | 1.830079e-47 |
MsG0280007491.01 | MsG0280011013.01 | 0.805374 | 1.377023e-49 | 7.273096e-47 |
MsG0280007491.01 | MsG0280011014.01 | 0.828505 | 8.662410e-55 | 8.626986e-52 |
MsG0280007491.01 | MsG0280011124.01 | 0.812734 | 3.651817e-51 | 2.340111e-48 |
MsG0280007491.01 | MsG0280011258.01 | 0.802678 | 5.005054e-49 | 2.466729e-46 |
MsG0280007491.01 | MsG0280011388.01 | 0.825277 | 5.117853e-54 | 4.643579e-51 |
MsG0280007491.01 | MsG0380012471.01 | 0.843502 | 1.347092e-58 | 2.111916e-55 |
MsG0280007491.01 | MsG0380013475.01 | 0.840604 | 7.866700e-58 | 1.126274e-54 |
MsG0280007491.01 | MsG0380013549.01 | 0.825768 | 3.915420e-54 | 3.602663e-51 |
MsG0280007491.01 | MsG0380013834.01 | 0.825569 | 4.364275e-54 | 3.992773e-51 |
MsG0280007491.01 | MsG0380015555.01 | 0.802298 | 5.995212e-49 | 2.926428e-46 |
MsG0280007491.01 | MsG0380015677.01 | 0.812816 | 3.505028e-51 | 2.250630e-48 |
MsG0280007491.01 | MsG0380015944.01 | 0.812597 | 3.914118e-51 | 2.499094e-48 |
MsG0280007491.01 | MsG0380016389.01 | 0.813181 | 2.914877e-51 | 1.890142e-48 |
MsG0280007491.01 | MsG0380016483.01 | 0.802150 | 6.431875e-49 | 3.127588e-46 |
MsG0280007491.01 | MsG0380016765.01 | 0.868691 | 5.407381e-66 | 1.974310e-62 |
MsG0280007491.01 | MsG0380016905.01 | 0.802894 | 4.517969e-49 | 2.238983e-46 |
MsG0280007491.01 | MsG0380016994.01 | 0.834620 | 2.698424e-56 | 3.219695e-53 |
MsG0280007491.01 | MsG0380017049.01 | 0.805338 | 1.400655e-49 | 7.391106e-47 |
MsG0280007491.01 | MsG0380017431.01 | 0.800814 | 1.207722e-48 | 5.677271e-46 |
MsG0280007491.01 | MsG0480018313.01 | 0.858808 | 6.390014e-63 | 1.651356e-59 |
MsG0280007491.01 | MsG0480018462.01 | 0.803656 | 3.141815e-49 | 1.587638e-46 |
MsG0280007491.01 | MsG0480018640.01 | 0.812229 | 4.709671e-51 | 2.977773e-48 |
MsG0280007491.01 | MsG0480018641.01 | 0.821736 | 3.444676e-53 | 2.826014e-50 |
MsG0280007491.01 | MsG0480019922.01 | 0.805874 | 1.081487e-49 | 5.786173e-47 |
MsG0280007491.01 | MsG0480020331.01 | 0.818079 | 2.363457e-52 | 1.751603e-49 |
MsG0280007491.01 | MsG0480020591.01 | 0.831551 | 1.565414e-55 | 1.704593e-52 |
MsG0280007491.01 | MsG0480020780.01 | 0.803202 | 3.901370e-49 | 1.948652e-46 |
MsG0280007491.01 | MsG0480021812.01 | 0.824482 | 7.881054e-54 | 6.989443e-51 |
MsG0280007491.01 | MsG0480022094.01 | 0.812865 | 3.419325e-51 | 2.198469e-48 |
MsG0280007491.01 | MsG0480022115.01 | 0.818135 | 2.295548e-52 | 1.703984e-49 |
MsG0280007491.01 | MsG0480022228.01 | 0.821522 | 3.860445e-53 | 3.147977e-50 |
MsG0280007491.01 | MsG0480022620.01 | 0.855079 | 8.022744e-62 | 1.830167e-58 |
MsG0280007491.01 | MsG0480022686.01 | -0.807921 | 3.990151e-50 | 2.250557e-47 |
MsG0280007491.01 | MsG0480022791.01 | 0.806968 | 6.355852e-50 | 3.497167e-47 |
MsG0280007491.01 | MsG0480022825.01 | 0.805350 | 1.392482e-49 | 7.350370e-47 |
MsG0280007491.01 | MsG0480023272.01 | 0.845994 | 2.869700e-59 | 4.869405e-56 |
MsG0280007491.01 | MsG0480023307.01 | 0.837520 | 4.951616e-57 | 6.448837e-54 |
MsG0280007491.01 | MsG0480023352.01 | 0.832191 | 1.087951e-55 | 1.207125e-52 |
MsG0280007491.01 | MsG0480023361.01 | 0.846582 | 1.984344e-59 | 3.431412e-56 |
MsG0280007491.01 | MsG0480023707.01 | 0.805249 | 1.462388e-49 | 7.699023e-47 |
MsG0280007491.01 | MsG0480023755.01 | 0.825487 | 4.563586e-54 | 4.165348e-51 |
MsG0280007491.01 | MsG0480023873.01 | 0.838907 | 2.176007e-57 | 2.956289e-54 |
MsG0280007491.01 | MsG0580024618.01 | 0.833345 | 5.625868e-56 | 6.461489e-53 |
MsG0280007491.01 | MsG0580024819.01 | 0.807778 | 4.280728e-50 | 2.405462e-47 |
MsG0280007491.01 | MsG0580025352.01 | 0.804389 | 2.211873e-49 | 1.138982e-46 |
MsG0280007491.01 | MsG0580025788.01 | -0.811215 | 7.826444e-51 | 4.816154e-48 |
MsG0280007491.01 | MsG0580027091.01 | 0.837570 | 4.808715e-57 | 6.271829e-54 |
MsG0280007491.01 | MsG0580027092.01 | 0.805979 | 1.027685e-49 | 5.513240e-47 |
MsG0280007491.01 | MsG0580027441.01 | 0.828052 | 1.114048e-54 | 1.094959e-51 |
MsG0280007491.01 | MsG0580029926.01 | 0.807819 | 4.195343e-50 | 2.360004e-47 |
MsG0280007491.01 | MsG0580030204.01 | 0.803268 | 3.780790e-49 | 1.891623e-46 |
MsG0280007491.01 | MsG0680031549.01 | 0.801506 | 8.720440e-49 | 4.171712e-46 |
MsG0280007491.01 | MsG0680031651.01 | 0.808297 | 3.319445e-50 | 1.890980e-47 |
MsG0280007491.01 | MsG0680034739.01 | 0.808316 | 3.288557e-50 | 1.874359e-47 |
MsG0280007491.01 | MsG0680035306.01 | 0.801856 | 7.391041e-49 | 3.567311e-46 |
MsG0280007491.01 | MsG0680035658.01 | 0.802632 | 5.116099e-49 | 2.518561e-46 |
MsG0280007491.01 | MsG0680035692.01 | 0.802611 | 5.167771e-49 | 2.542607e-46 |
MsG0280007491.01 | MsG0780036663.01 | 0.846739 | 1.797243e-59 | 3.123840e-56 |
MsG0280007491.01 | MsG0780037054.01 | 0.821788 | 3.351914e-53 | 2.754044e-50 |
MsG0280007491.01 | MsG0780037240.01 | 0.812268 | 4.618400e-51 | 2.923137e-48 |
MsG0280007491.01 | MsG0780038443.01 | 0.845099 | 5.016410e-59 | 8.269243e-56 |
MsG0280007491.01 | MsG0780039137.01 | 0.830801 | 2.393565e-55 | 2.548902e-52 |
MsG0280007491.01 | MsG0780039243.01 | 0.835943 | 1.249939e-56 | 1.551747e-53 |
MsG0280007491.01 | MsG0780040044.01 | 0.810574 | 1.077324e-50 | 6.517373e-48 |
MsG0280007491.01 | MsG0780040669.01 | 0.806075 | 9.808940e-50 | 5.274921e-47 |
MsG0280007491.01 | MsG0780040688.01 | 0.801426 | 9.053095e-49 | 4.322129e-46 |
MsG0280007491.01 | MsG0780040841.01 | 0.812757 | 3.611131e-51 | 2.315334e-48 |
MsG0280007491.01 | MsG0780040926.01 | 0.824756 | 6.794890e-54 | 6.074603e-51 |
MsG0280007491.01 | MsG0780041535.01 | 0.842665 | 2.250795e-58 | 3.436760e-55 |
MsG0280007491.01 | MsG0880042128.01 | 0.822331 | 2.508389e-53 | 2.093172e-50 |
MsG0280007491.01 | MsG0880042129.01 | 0.814949 | 1.187260e-51 | 8.076619e-49 |
MsG0280007491.01 | MsG0880042311.01 | 0.809331 | 1.994546e-50 | 1.167742e-47 |
MsG0280007491.01 | MsG0880042543.01 | 0.829398 | 5.264806e-55 | 5.382235e-52 |
MsG0280007491.01 | MsG0880042698.01 | 0.821769 | 3.385260e-53 | 2.779967e-50 |
MsG0280007491.01 | MsG0880042760.01 | 0.838762 | 2.372048e-57 | 3.208693e-54 |
MsG0280007491.01 | MsG0880042829.01 | 0.826356 | 2.837341e-54 | 2.654781e-51 |
MsG0280007491.01 | MsG0880043479.01 | 0.816141 | 6.444701e-52 | 4.529729e-49 |
MsG0280007491.01 | MsG0880043480.01 | 0.828792 | 7.381441e-55 | 7.412467e-52 |
MsG0280007491.01 | MsG0880043592.01 | 0.803169 | 3.963807e-49 | 1.978207e-46 |
MsG0280007491.01 | MsG0880043886.01 | 0.824991 | 5.979270e-54 | 5.381378e-51 |
MsG0280007491.01 | MsG0880046012.01 | 0.820244 | 7.598191e-53 | 5.979766e-50 |
MsG0280007491.01 | MsG0880046027.01 | 0.834944 | 2.235406e-56 | 2.693502e-53 |
MsG0280007491.01 | MsG0880046069.01 | 0.800477 | 1.415191e-48 | 6.595810e-46 |
MsG0280007491.01 | MsG0880046074.01 | 0.817136 | 3.856765e-52 | 2.785559e-49 |
MsG0280007491.01 | MsG0880046762.01 | 0.805434 | 1.337425e-49 | 7.074948e-47 |
MsG0280007491.01 | MsG0880046933.01 | 0.838080 | 3.555223e-57 | 4.709865e-54 |
MsG0280007491.01 | MsG0880047120.01 | 0.815151 | 1.070994e-51 | 7.325649e-49 |
MsG0280007491.01 | MsG0880047192.01 | 0.821170 | 4.655147e-53 | 3.759164e-50 |
MsG0280007491.01 | MsG0880047470.01 | 0.819368 | 1.204584e-52 | 9.250920e-50 |
MsG0280007491.01 | MsG0880047472.01 | 0.800893 | 1.163828e-48 | 5.482331e-46 |
MsG0280007491.01 | MsG0880047473.01 | 0.832462 | 9.321912e-56 | 1.042678e-52 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0280007491.01.T01 | MTR_2g026530 | 99.005 | 201 | 2 | 0 | 1 | 201 | 1 | 201 | 1.32e-144 | 400 |
MsG0280007491.01.T01 | MTR_2g026530 | 98.895 | 181 | 2 | 0 | 21 | 201 | 1 | 181 | 8.94e-128 | 357 |
MsG0280007491.01.T01 | MTR_0693s0030 | 29.379 | 177 | 120 | 2 | 24 | 195 | 1 | 177 | 5.82e-24 | 94.0 |
MsG0280007491.01.T01 | MTR_3g064310 | 32.317 | 164 | 101 | 3 | 28 | 191 | 42 | 195 | 3.97e-21 | 87.4 |
MsG0280007491.01.T01 | MTR_5g076480 | 31.098 | 164 | 104 | 3 | 28 | 191 | 34 | 188 | 6.60e-20 | 84.0 |
MsG0280007491.01.T01 | MTR_0004s0210 | 30.822 | 146 | 85 | 3 | 29 | 171 | 6 | 138 | 4.25e-15 | 70.1 |
MsG0280007491.01.T01 | MTR_0160s0040 | 26.316 | 171 | 116 | 4 | 28 | 198 | 19 | 179 | 9.10e-14 | 67.0 |
MsG0280007491.01.T01 | MTR_8g013900 | 29.814 | 161 | 104 | 3 | 26 | 177 | 33 | 193 | 2.58e-12 | 63.5 |
MsG0280007491.01.T01 | MTR_7g011090 | 26.744 | 172 | 118 | 3 | 20 | 189 | 20 | 185 | 6.30e-12 | 62.0 |
MsG0280007491.01.T01 | MTR_7g108130 | 27.895 | 190 | 122 | 6 | 9 | 191 | 5 | 186 | 1.42e-11 | 61.2 |
MsG0280007491.01.T01 | MTR_4g118800 | 31.410 | 156 | 104 | 3 | 32 | 187 | 29 | 181 | 2.38e-11 | 60.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0280007491.01.T01 | AT2G35760 | 68.718 | 195 | 60 | 1 | 1 | 195 | 1 | 194 | 1.91e-87 | 256 |
MsG0280007491.01.T01 | AT4G16442 | 61.798 | 178 | 68 | 0 | 21 | 198 | 1 | 178 | 1.70e-79 | 235 |
MsG0280007491.01.T01 | AT4G25830 | 35.294 | 170 | 104 | 3 | 27 | 195 | 3 | 167 | 3.03e-23 | 91.7 |
MsG0280007491.01.T01 | AT1G17200 | 30.814 | 172 | 111 | 3 | 28 | 199 | 30 | 193 | 2.75e-22 | 90.1 |
MsG0280007491.01.T01 | AT3G14380 | 29.240 | 171 | 103 | 3 | 23 | 188 | 15 | 172 | 5.60e-15 | 70.1 |
MsG0280007491.01.T01 | AT4G15610 | 31.098 | 164 | 97 | 3 | 9 | 167 | 16 | 168 | 2.83e-14 | 68.6 |
MsG0280007491.01.T01 | AT5G15290 | 28.000 | 150 | 103 | 2 | 23 | 170 | 20 | 166 | 9.63e-14 | 67.0 |
MsG0280007491.01.T01 | AT4G15630 | 27.011 | 174 | 120 | 2 | 17 | 187 | 20 | 189 | 1.45e-11 | 61.2 |
MsG0280007491.01.T01 | AT1G03700 | 29.710 | 138 | 87 | 2 | 29 | 166 | 7 | 134 | 2.13e-11 | 60.1 |
MsG0280007491.01.T01 | AT4G03540 | 29.839 | 124 | 77 | 2 | 48 | 171 | 26 | 139 | 6.35e-11 | 58.9 |
Find 49 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTAATGATTCATGTAATTAT+AGG | 0.216861 | 2:+16167411 | MsG0280007491.01.T01:five_prime_UTR |
GGTCAAGAATGGAGGCTTCT+AGG | 0.310942 | 2:-16167478 | None:intergenic |
TCATCCATTGCAATTGTTCC+TGG | 0.311139 | 2:-16169499 | None:intergenic |
AGGTTTGTGAATCTTGGTTT+AGG | 0.330696 | 2:+16167754 | MsG0280007491.01.T01:CDS |
AAATTGCAAAACAACCAAAT+TGG | 0.332368 | 2:-16169752 | None:intergenic |
ATGTTCTAATGCTTATTAAT+TGG | 0.333637 | 2:+16169860 | MsG0280007491.01.T01:three_prime_UTR |
ACATCTCAAACCTTGAATTA+AGG | 0.337420 | 2:-16168120 | None:intergenic |
TAATAAACTTTACAGGTTCC+TGG | 0.340752 | 2:+16168067 | MsG0280007491.01.T01:intron |
TTCAGTCTCTTCCGTTTGTA+TGG | 0.355002 | 2:+16169626 | MsG0280007491.01.T01:CDS |
AATTACATGAATCATTAAAT+AGG | 0.356990 | 2:-16167406 | None:intergenic |
TGTGTAGTGAGTATGATTAA+AGG | 0.372404 | 2:+16168140 | MsG0280007491.01.T01:CDS |
TTAGTATAAGTTAATATCAT+AGG | 0.383186 | 2:+16169682 | MsG0280007491.01.T01:three_prime_UTR |
ATGTTTGTACTATGATAAAC+AGG | 0.392867 | 2:-16167688 | None:intergenic |
ATCTGCTGTGTTTGCAAAGA+TGG | 0.404743 | 2:+16169475 | MsG0280007491.01.T01:CDS |
TGATAAACAGGAACAGTTCC+AGG | 0.407224 | 2:-16167676 | None:intergenic |
GCTGGTTACTCCTTAATTCA+AGG | 0.432706 | 2:+16168110 | MsG0280007491.01.T01:CDS |
TTTCAACAAGCCCTTAGCTT+GGG | 0.448248 | 2:+16168172 | MsG0280007491.01.T01:CDS |
GAATTTAGCTTTCTTCTGAA+TGG | 0.449071 | 2:-16167830 | None:intergenic |
AGAAAATATAGCCCAAGCTA+AGG | 0.484898 | 2:-16168183 | None:intergenic |
TTCTGCAACCAAGTTGGAGA+AGG | 0.490439 | 2:+16169545 | MsG0280007491.01.T01:CDS |
TAGCTAACCCTTCTCCAACT+TGG | 0.494841 | 2:-16169553 | None:intergenic |
ATGAAGATATGCAATATGTA+TGG | 0.503142 | 2:+16169518 | MsG0280007491.01.T01:CDS |
GTTGCTAATGCTATAACTGC+TGG | 0.511879 | 2:+16168092 | MsG0280007491.01.T01:CDS |
GTGTGACAAGTGGTCAAGAA+TGG | 0.513241 | 2:-16167489 | None:intergenic |
AGCTAAATTCACTGACATGA+AGG | 0.513279 | 2:+16167843 | MsG0280007491.01.T01:CDS |
GGAAAATTCTGCAACCAAGT+TGG | 0.516285 | 2:+16169539 | MsG0280007491.01.T01:CDS |
CATGAAAGTGTTGGATAGGA+GGG | 0.520852 | 2:+16167708 | MsG0280007491.01.T01:CDS |
CAAACATGAAAGTGTTGGAT+AGG | 0.521116 | 2:+16167704 | MsG0280007491.01.T01:CDS |
TTGGGTGTAGGTGTTAGTCC+TGG | 0.521914 | 2:+16167658 | MsG0280007491.01.T01:CDS |
ACATGAAAGTGTTGGATAGG+AGG | 0.523051 | 2:+16167707 | MsG0280007491.01.T01:CDS |
GAGGGTTAGAATAACTGAGT+TGG | 0.530374 | 2:+16167726 | MsG0280007491.01.T01:CDS |
GGCTTCTAGGACAGAGAAAG+AGG | 0.531910 | 2:-16167465 | None:intergenic |
ATGATACTACCACCATACTA+AGG | 0.534220 | 2:-16169592 | None:intergenic |
TTTGGTTAGCCTTAGTATGG+TGG | 0.542187 | 2:+16169583 | MsG0280007491.01.T01:CDS |
GAAAATATAGCCCAAGCTAA+GGG | 0.555703 | 2:-16168182 | None:intergenic |
AAAATGAGTTACTTGGGTGT+AGG | 0.573937 | 2:+16167646 | MsG0280007491.01.T01:exon |
TCTGCAACCAAGTTGGAGAA+GGG | 0.578467 | 2:+16169546 | MsG0280007491.01.T01:CDS |
AGTCTCTTCCGTTTGTATGG+TGG | 0.581332 | 2:+16169629 | MsG0280007491.01.T01:CDS |
TCTGCTGTGTTTGCAAAGAT+GGG | 0.593013 | 2:+16169476 | MsG0280007491.01.T01:CDS |
TGTGTTTGCAAAGATGGGCC+AGG | 0.595653 | 2:+16169481 | MsG0280007491.01.T01:CDS |
ATGTATGTAGTTGTAGTGAA+TGG | 0.599094 | 2:+16169794 | MsG0280007491.01.T01:three_prime_UTR |
TAGTACAAACATGAAAGTGT+TGG | 0.606008 | 2:+16167699 | MsG0280007491.01.T01:CDS |
TGGGCCAGGAACAATTGCAA+TGG | 0.614108 | 2:+16169495 | MsG0280007491.01.T01:CDS |
TGACAAGTGGTCAAGAATGG+AGG | 0.634675 | 2:-16167486 | None:intergenic |
AAGAAAACAGTGGATTTGAG+TGG | 0.671545 | 2:-16169727 | None:intergenic |
CAAATTGGCCAAGAAAACAG+TGG | 0.680213 | 2:-16169737 | None:intergenic |
GGTAATGGCATATATAACAG+TGG | 0.698046 | 2:+16169430 | MsG0280007491.01.T01:intron |
TTATAGCATTAGCAACAACC+AGG | 0.720662 | 2:-16168085 | None:intergenic |
ATGCTGCAAAGTGTGACAAG+TGG | 0.721365 | 2:-16167499 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTAACATGTTTATTAAAATA+AGG | - | Chr2:16169060-16169079 | None:intergenic | 10.0% |
!! | ATACATACATATAAAAGTTA+TGG | - | Chr2:16169407-16169426 | None:intergenic | 15.0% |
!! | GATGAAAAAAATAGTTATAA+TGG | - | Chr2:16167984-16168003 | None:intergenic | 15.0% |
!! | TTAATGATTCATGTAATTAT+AGG | + | Chr2:16167411-16167430 | MsG0280007491.01.T01:five_prime_UTR | 15.0% |
!! | TTAGTATAAGTTAATATCAT+AGG | + | Chr2:16169682-16169701 | MsG0280007491.01.T01:three_prime_UTR | 15.0% |
!! | TTATTAAAACCATCAAAATT+GGG | - | Chr2:16168053-16168072 | None:intergenic | 15.0% |
!! | TTTATTAAAACCATCAAAAT+TGG | - | Chr2:16168054-16168073 | None:intergenic | 15.0% |
!!! | AATAAATGTATGTTTTATGT+TGG | - | Chr2:16168940-16168959 | None:intergenic | 15.0% |
!!! | TCTGATAAAATTTAAAACAT+TGG | - | Chr2:16167904-16167923 | None:intergenic | 15.0% |
!! | ATGTTCTAATGCTTATTAAT+TGG | + | Chr2:16169860-16169879 | MsG0280007491.01.T01:three_prime_UTR | 20.0% |
!! | TTTCAAACAACAAACTAAAT+AGG | - | Chr2:16168867-16168886 | None:intergenic | 20.0% |
!!! | AAACCCTAAAGATTTTTATA+AGG | + | Chr2:16169034-16169053 | MsG0280007491.01.T01:intron | 20.0% |
!!! | AATAGATATGCTCTAAAAAA+TGG | + | Chr2:16168981-16169000 | MsG0280007491.01.T01:intron | 20.0% |
!!! | ATGGTTTTAATAAACTTTAC+AGG | + | Chr2:16168060-16168079 | MsG0280007491.01.T01:intron | 20.0% |
!!! | CTTATTTTCATAAGCATTTT+AGG | - | Chr2:16169268-16169287 | None:intergenic | 20.0% |
!!! | TTTTCATAAACTCTTCTAAA+TGG | + | Chr2:16169320-16169339 | MsG0280007491.01.T01:intron | 20.0% |
!!! | TTTTTGTTTATAATAGTGAC+TGG | + | Chr2:16168604-16168623 | MsG0280007491.01.T01:intron | 20.0% |
! | AAATTGCAAAACAACCAAAT+TGG | - | Chr2:16169755-16169774 | None:intergenic | 25.0% |
! | AAGAGGTTAAGTAAGAAAAA+AGG | - | Chr2:16167451-16167470 | None:intergenic | 25.0% |
! | AATAAGCCGAAAATAGTTTA+TGG | + | Chr2:16169282-16169301 | MsG0280007491.01.T01:intron | 25.0% |
! | ACCTAATTGATATTGATGTT+AGG | + | Chr2:16168774-16168793 | MsG0280007491.01.T01:intron | 25.0% |
! | ATACTTACTACCATAATTGA+GGG | + | Chr2:16168822-16168841 | MsG0280007491.01.T01:intron | 25.0% |
! | ATGAAGATATGCAATATGTA+TGG | + | Chr2:16169518-16169537 | MsG0280007491.01.T01:CDS | 25.0% |
! | ATGTTTGTACTATGATAAAC+AGG | - | Chr2:16167691-16167710 | None:intergenic | 25.0% |
! | CAACTTATAACTTACGAAAA+CGG | - | Chr2:16169162-16169181 | None:intergenic | 25.0% |
! | CATTCATTAAATGATGTATG+TGG | + | Chr2:16168529-16168548 | MsG0280007491.01.T01:intron | 25.0% |
! | CATTCATTAAATGATGTATG+TGG | - | Chr2:16168548-16168529 | None:intergenic | 25.0% |
! | GCAAAATTAAAAATGCGTAT+TGG | + | Chr2:16169654-16169673 | MsG0280007491.01.T01:CDS | 25.0% |
! | GTTATTAAAAAGTGGGTATA+TGG | + | Chr2:16168898-16168917 | MsG0280007491.01.T01:intron | 25.0% |
! | TAAGGAAAAATGAGTTACTT+GGG | + | Chr2:16167640-16167659 | MsG0280007491.01.T01:exon | 25.0% |
! | TATACTTACTACCATAATTG+AGG | + | Chr2:16168821-16168840 | MsG0280007491.01.T01:intron | 25.0% |
! | TCCTAACATCAATATCAATT+AGG | - | Chr2:16168778-16168797 | None:intergenic | 25.0% |
! | TTAAGGAAAAATGAGTTACT+TGG | + | Chr2:16167639-16167658 | MsG0280007491.01.T01:exon | 25.0% |
! | TTGTGAATTGGACAAAATTA+TGG | + | Chr2:16168278-16168297 | MsG0280007491.01.T01:intron | 25.0% |
! | TTTAGTGTATGTTTGTGAAT+TGG | + | Chr2:16168266-16168285 | MsG0280007491.01.T01:intron | 25.0% |
!! | AAGGCCTTATAAAAATCTTT+AGG | - | Chr2:16169041-16169060 | None:intergenic | 25.0% |
!! | ACATGTCCATAAACTATTTT+CGG | - | Chr2:16169291-16169310 | None:intergenic | 25.0% |
!! | ACTTTTATATGTATGTATGC+AGG | + | Chr2:16169409-16169428 | MsG0280007491.01.T01:intron | 25.0% |
!! | AGGCCTTATAAAAATCTTTA+GGG | - | Chr2:16169040-16169059 | None:intergenic | 25.0% |
!! | ATTAAAAATGCGTATTGGTA+AGG | + | Chr2:16169659-16169678 | MsG0280007491.01.T01:CDS | 25.0% |
!! | TTTTTGCTTATAATAGTGAC+CGG | - | Chr2:16168494-16168513 | None:intergenic | 25.0% |
!!! | AGTTAGTTTTAGAGATTAAG+AGG | - | Chr2:16168750-16168769 | None:intergenic | 25.0% |
!!! | TGTGAGTGTTGTTTTTTTTA+AGG | + | Chr2:16167622-16167641 | MsG0280007491.01.T01:five_prime_UTR | 25.0% |
!!! | TTTGTTGTTTGAAATGAACA+TGG | + | Chr2:16168873-16168892 | MsG0280007491.01.T01:intron | 25.0% |
ACATCTCAAACCTTGAATTA+AGG | - | Chr2:16168123-16168142 | None:intergenic | 30.0% | |
ACATGGCAGTTATTAAAAAG+TGG | + | Chr2:16168890-16168909 | MsG0280007491.01.T01:intron | 30.0% | |
AGGTGAGTTTGAAAAAATCT+CGG | - | Chr2:16168333-16168352 | None:intergenic | 30.0% | |
ATATGTATGTATGCAGGTAA+TGG | + | Chr2:16169415-16169434 | MsG0280007491.01.T01:intron | 30.0% | |
ATGGTAGTAAGTATACCTTA+TGG | - | Chr2:16168816-16168835 | None:intergenic | 30.0% | |
ATGTATGTAGTTGTAGTGAA+TGG | + | Chr2:16169794-16169813 | MsG0280007491.01.T01:three_prime_UTR | 30.0% | |
CAAAAAAAAATCTTCAGGGT+TGG | - | Chr2:16169009-16169028 | None:intergenic | 30.0% | |
CATGGCAGTTATTAAAAAGT+GGG | + | Chr2:16168891-16168910 | MsG0280007491.01.T01:intron | 30.0% | |
CCTCCAAAAAAAAATCTTCA+GGG | - | Chr2:16169013-16169032 | None:intergenic | 30.0% | |
CTTATTTCCAACAACTGTTT+AGG | - | Chr2:16169199-16169218 | None:intergenic | 30.0% | |
GACGTAAAAGTTAGTTATAC+TGG | + | Chr2:16167922-16167941 | MsG0280007491.01.T01:intron | 30.0% | |
TAATAAACTTTACAGGTTCC+TGG | + | Chr2:16168067-16168086 | MsG0280007491.01.T01:intron | 30.0% | |
TACTTACTACCATAATTGAG+GGG | + | Chr2:16168823-16168842 | MsG0280007491.01.T01:intron | 30.0% | |
TGATATTGATGTTAGGACTA+AGG | + | Chr2:16168781-16168800 | MsG0280007491.01.T01:intron | 30.0% | |
TGTGTAGTGAGTATGATTAA+AGG | + | Chr2:16168140-16168159 | MsG0280007491.01.T01:CDS | 30.0% | |
TGTTTATAATAGTGACTGGA+GGG | + | Chr2:16168608-16168627 | MsG0280007491.01.T01:intron | 30.0% | |
TTGTTTATAATAGTGACTGG+AGG | + | Chr2:16168607-16168626 | MsG0280007491.01.T01:intron | 30.0% | |
! | GAATATTGTCCCAATTTTGA+TGG | + | Chr2:16168041-16168060 | MsG0280007491.01.T01:intron | 30.0% |
! | TAGTACAAACATGAAAGTGT+TGG | + | Chr2:16167699-16167718 | MsG0280007491.01.T01:CDS | 30.0% |
!! | GAATTTAGCTTTCTTCTGAA+TGG | - | Chr2:16167833-16167852 | None:intergenic | 30.0% |
!! | TGGTTGTTTTGCAATTTACA+AGG | + | Chr2:16169758-16169777 | MsG0280007491.01.T01:three_prime_UTR | 30.0% |
!! | TTATTGCTTGTTTGTTATCG+AGG | - | Chr2:16168353-16168372 | None:intergenic | 30.0% |
!!! | ATTTTTGGTTAGCCTTAGTA+TGG | + | Chr2:16169580-16169599 | MsG0280007491.01.T01:CDS | 30.0% |
!!! | CAACCCTGAAGATTTTTTTT+TGG | + | Chr2:16169007-16169026 | MsG0280007491.01.T01:intron | 30.0% |
!!! | CCTGAAGATTTTTTTTTGGA+GGG | + | Chr2:16169011-16169030 | MsG0280007491.01.T01:intron | 30.0% |
AAAATGAGTTACTTGGGTGT+AGG | + | Chr2:16167646-16167665 | MsG0280007491.01.T01:exon | 35.0% | |
AAGTGGGTATATGGTAGATA+TGG | + | Chr2:16168907-16168926 | MsG0280007491.01.T01:intron | 35.0% | |
AGAAAATATAGCCCAAGCTA+AGG | - | Chr2:16168186-16168205 | None:intergenic | 35.0% | |
AGCTAAATTCACTGACATGA+AGG | + | Chr2:16167843-16167862 | MsG0280007491.01.T01:CDS | 35.0% | |
AGGTTTGTGAATCTTGGTTT+AGG | + | Chr2:16167754-16167773 | MsG0280007491.01.T01:CDS | 35.0% | |
ATGATACTACCACCATACTA+AGG | - | Chr2:16169595-16169614 | None:intergenic | 35.0% | |
ATTGTGATACCCCTCAATTA+TGG | - | Chr2:16168835-16168854 | None:intergenic | 35.0% | |
CATCTATCCTAAACAGTTGT+TGG | + | Chr2:16169189-16169208 | MsG0280007491.01.T01:intron | 35.0% | |
CCCTCCAAAAAAAAATCTTC+AGG | - | Chr2:16169014-16169033 | None:intergenic | 35.0% | |
CTAAGGAATCATTCACCATA+AGG | + | Chr2:16168798-16168817 | MsG0280007491.01.T01:intron | 35.0% | |
CTTGACATTATAGCGAATCA+TGG | + | Chr2:16168017-16168036 | MsG0280007491.01.T01:intron | 35.0% | |
GAAAATATAGCCCAAGCTAA+GGG | - | Chr2:16168185-16168204 | None:intergenic | 35.0% | |
TGCTTGATAAGACAAACTTG+AGG | - | Chr2:16168707-16168726 | None:intergenic | 35.0% | |
TTATAGCATTAGCAACAACC+AGG | - | Chr2:16168088-16168107 | None:intergenic | 35.0% | |
TTGATCAATTATACACCCTC+CGG | + | Chr2:16168472-16168491 | MsG0280007491.01.T01:intron | 35.0% | |
! | AAGAAAACAGTGGATTTGAG+TGG | - | Chr2:16169730-16169749 | None:intergenic | 35.0% |
! | ACTCAAATCCACTGTTTTCT+TGG | + | Chr2:16169729-16169748 | MsG0280007491.01.T01:three_prime_UTR | 35.0% |
! | CTTCTAAATGGTCTTACAAG+TGG | + | Chr2:16169332-16169351 | MsG0280007491.01.T01:intron | 35.0% |
! | GGTAATGGCATATATAACAG+TGG | + | Chr2:16169430-16169449 | MsG0280007491.01.T01:intron | 35.0% |
! | TTTTGCTACCACCATACAAA+CGG | - | Chr2:16169640-16169659 | None:intergenic | 35.0% |
!! | CAAACATGAAAGTGTTGGAT+AGG | + | Chr2:16167704-16167723 | MsG0280007491.01.T01:CDS | 35.0% |
!! | TTAGCTTGGGCTATATTTTC+TGG | + | Chr2:16168185-16168204 | MsG0280007491.01.T01:CDS | 35.0% |
!!! | CCCTGAAGATTTTTTTTTGG+AGG | + | Chr2:16169010-16169029 | MsG0280007491.01.T01:intron | 35.0% |
!!! | GAATAACTGAGTTGGTTTTG+AGG | + | Chr2:16167734-16167753 | MsG0280007491.01.T01:CDS | 35.0% |
!!! | GTTTTGAGGTTTGTGAATCT+TGG | + | Chr2:16167748-16167767 | MsG0280007491.01.T01:CDS | 35.0% |
ATCTGCTGTGTTTGCAAAGA+TGG | + | Chr2:16169475-16169494 | MsG0280007491.01.T01:CDS | 40.0% | |
CAAATTGGCCAAGAAAACAG+TGG | - | Chr2:16169740-16169759 | None:intergenic | 40.0% | |
GAGGGTTAGAATAACTGAGT+TGG | + | Chr2:16167726-16167745 | MsG0280007491.01.T01:CDS | 40.0% | |
GCTGGTTACTCCTTAATTCA+AGG | + | Chr2:16168110-16168129 | MsG0280007491.01.T01:CDS | 40.0% | |
GGAAAATTCTGCAACCAAGT+TGG | + | Chr2:16169539-16169558 | MsG0280007491.01.T01:CDS | 40.0% | |
GTTGCTAATGCTATAACTGC+TGG | + | Chr2:16168092-16168111 | MsG0280007491.01.T01:CDS | 40.0% | |
TCATCCATTGCAATTGTTCC+TGG | - | Chr2:16169502-16169521 | None:intergenic | 40.0% | |
TCTGCTGTGTTTGCAAAGAT+GGG | + | Chr2:16169476-16169495 | MsG0280007491.01.T01:CDS | 40.0% | |
TGATAAACAGGAACAGTTCC+AGG | - | Chr2:16167679-16167698 | None:intergenic | 40.0% | |
TGCTTATAATAGTGACCGGA+GGG | - | Chr2:16168490-16168509 | None:intergenic | 40.0% | |
TTAGAGATTAAGAGGTCCCA+CGG | - | Chr2:16168742-16168761 | None:intergenic | 40.0% | |
TTCAGTCTCTTCCGTTTGTA+TGG | + | Chr2:16169626-16169645 | MsG0280007491.01.T01:CDS | 40.0% | |
TTGCTTATAATAGTGACCGG+AGG | - | Chr2:16168491-16168510 | None:intergenic | 40.0% | |
TTTCAACAAGCCCTTAGCTT+GGG | + | Chr2:16168172-16168191 | MsG0280007491.01.T01:CDS | 40.0% | |
! | CACTGTTTTCTTGGCCAATT+TGG | + | Chr2:16169738-16169757 | MsG0280007491.01.T01:three_prime_UTR | 40.0% |
! | TTTTCAACAAGCCCTTAGCT+TGG | + | Chr2:16168171-16168190 | MsG0280007491.01.T01:CDS | 40.0% |
!! | ACATGAAAGTGTTGGATAGG+AGG | + | Chr2:16167707-16167726 | MsG0280007491.01.T01:CDS | 40.0% |
!! | CATGAAAGTGTTGGATAGGA+GGG | + | Chr2:16167708-16167727 | MsG0280007491.01.T01:CDS | 40.0% |
!! | GGCTATATTTTCTGGTGATC+AGG | + | Chr2:16168193-16168212 | MsG0280007491.01.T01:CDS | 40.0% |
!! | TTTGGTTAGCCTTAGTATGG+TGG | + | Chr2:16169583-16169602 | MsG0280007491.01.T01:CDS | 40.0% |
!!! | AGGGTTAGCTAGTGCATTTT+TGG | + | Chr2:16169565-16169584 | MsG0280007491.01.T01:CDS | 40.0% |
!!! | GCGTCTGTTTTTAGTGTACA+AGG | + | Chr2:16168391-16168410 | MsG0280007491.01.T01:intron | 40.0% |
AAGCAATGTAACCAGTACCG+TGG | + | Chr2:16168722-16168741 | MsG0280007491.01.T01:intron | 45.0% | |
AGCAATGTAACCAGTACCGT+GGG | + | Chr2:16168723-16168742 | MsG0280007491.01.T01:intron | 45.0% | |
AGTCTCTTCCGTTTGTATGG+TGG | + | Chr2:16169629-16169648 | MsG0280007491.01.T01:CDS | 45.0% | |
ATGCTGCAAAGTGTGACAAG+TGG | - | Chr2:16167502-16167521 | None:intergenic | 45.0% | |
GTGTGACAAGTGGTCAAGAA+TGG | - | Chr2:16167492-16167511 | None:intergenic | 45.0% | |
TAGCTAACCCTTCTCCAACT+TGG | - | Chr2:16169556-16169575 | None:intergenic | 45.0% | |
TGACAAGTGGTCAAGAATGG+AGG | - | Chr2:16167489-16167508 | None:intergenic | 45.0% | |
! | TCTGCAACCAAGTTGGAGAA+GGG | + | Chr2:16169546-16169565 | MsG0280007491.01.T01:CDS | 45.0% |
! | TTCTGCAACCAAGTTGGAGA+AGG | + | Chr2:16169545-16169564 | MsG0280007491.01.T01:CDS | 45.0% |
ATTAAGAGGTCCCACGGTAC+TGG | - | Chr2:16168736-16168755 | None:intergenic | 50.0% | |
GGTCAAGAATGGAGGCTTCT+AGG | - | Chr2:16167481-16167500 | None:intergenic | 50.0% | |
TGGGCCAGGAACAATTGCAA+TGG | + | Chr2:16169495-16169514 | MsG0280007491.01.T01:CDS | 50.0% | |
TGTGTTTGCAAAGATGGGCC+AGG | + | Chr2:16169481-16169500 | MsG0280007491.01.T01:CDS | 50.0% | |
TTGGGTGTAGGTGTTAGTCC+TGG | + | Chr2:16167658-16167677 | MsG0280007491.01.T01:CDS | 50.0% | |
!! | GGCTTCTAGGACAGAGAAAG+AGG | - | Chr2:16167468-16167487 | None:intergenic | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr2 | gene | 16167407 | 16169909 | 16167407 | ID=MsG0280007491.01;Name=MsG0280007491.01 |
Chr2 | mRNA | 16167407 | 16169909 | 16167407 | ID=MsG0280007491.01.T01;Parent=MsG0280007491.01;Name=MsG0280007491.01.T01;_AED=0.49;_eAED=0.49;_QI=242|1|1|1|1|1|3|230|201 |
Chr2 | exon | 16167407 | 16167872 | 16167407 | ID=MsG0280007491.01.T01:exon:1167;Parent=MsG0280007491.01.T01 |
Chr2 | exon | 16168082 | 16168214 | 16168082 | ID=MsG0280007491.01.T01:exon:1168;Parent=MsG0280007491.01.T01 |
Chr2 | exon | 16169431 | 16169909 | 16169431 | ID=MsG0280007491.01.T01:exon:1169;Parent=MsG0280007491.01.T01 |
Chr2 | five_prime_UTR | 16167407 | 16167648 | 16167407 | ID=MsG0280007491.01.T01:five_prime_utr;Parent=MsG0280007491.01.T01 |
Chr2 | CDS | 16167649 | 16167872 | 16167649 | ID=MsG0280007491.01.T01:cds;Parent=MsG0280007491.01.T01 |
Chr2 | CDS | 16168082 | 16168214 | 16168082 | ID=MsG0280007491.01.T01:cds;Parent=MsG0280007491.01.T01 |
Chr2 | CDS | 16169431 | 16169679 | 16169431 | ID=MsG0280007491.01.T01:cds;Parent=MsG0280007491.01.T01 |
Chr2 | three_prime_UTR | 16169680 | 16169909 | 16169680 | ID=MsG0280007491.01.T01:three_prime_utr;Parent=MsG0280007491.01.T01 |
Gene Sequence |
Protein sequence |