AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580025986.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025986.01.T01 MTR_5g037120 92.694 219 11 1 1 219 1 214 7.86e-137 382
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025986.01.T01 AT1G69980 46.364 220 102 3 1 219 1 205 1.21e-58 184

Find 41 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGAATGGTTTGGAGTATTT+TGG 0.171663 5:+28703379 None:intergenic
CATATAGATGAACACGTTTA+TGG 0.204792 5:+28705238 MsG0580025986.01.T01:CDS
AGCAGCAATGGGTTGAATTA+TGG 0.285103 5:-28707118 None:intergenic
AATAGGAAATTTCGAGATTC+AGG 0.291866 5:+28707038 MsG0580025986.01.T01:three_prime_UTR
TTCAGCGAAGATTCTGAAAA+TGG 0.322039 5:+28703662 MsG0580025986.01.T01:intron
TCTGAAAATGGACATGGGTT+TGG 0.350341 5:+28703674 MsG0580025986.01.T01:CDS
CAACCTTCAATACTCGCTTT+AGG 0.358816 5:+28703509 MsG0580025986.01.T01:CDS
CTTCACATTTGAATGGAATT+CGG 0.363187 5:-28705126 None:intergenic
TCTACTTTGGAAATTTCTAA+TGG 0.380217 5:+28705202 MsG0580025986.01.T01:CDS
ACAGTCACAGAGAACATTAC+TGG 0.393318 5:+28705276 MsG0580025986.01.T01:CDS
AAGAAGGCGGCTGCCATGTC+TGG 0.412691 5:+28706884 MsG0580025986.01.T01:CDS
TTAATCTCTTCACATTTGAA+TGG 0.418906 5:-28705133 None:intergenic
TCAGAAAACTCGGTCTACTT+TGG 0.434982 5:+28705189 MsG0580025986.01.T01:CDS
TGACCTAAAGCGAGTATTGA+AGG 0.444323 5:-28703512 None:intergenic
AAATATCGCTGTAGTGAGAC+AGG 0.446528 5:+28705100 MsG0580025986.01.T01:CDS
ATGGCGAAGAATAACAGAAA+TGG 0.456995 5:-28703473 None:intergenic
TTGATCAGATTAGCAGCAAT+GGG 0.473546 5:-28707129 None:intergenic
GAAGAGAAGTTGTCAGTGCT+TGG 0.474771 5:+28705370 MsG0580025986.01.T01:CDS
CGCTTCAGATAATAAGTCAC+AGG 0.478777 5:+28705309 MsG0580025986.01.T01:CDS
TGGTTATGTTGCAGCAGGAA+GGG 0.479759 5:+28706904 MsG0580025986.01.T01:CDS
AAGGAGCACAATCAAAAGTA+AGG 0.483222 5:-28703742 None:intergenic
AACTTCTCTTCAGTATCTGC+AGG 0.509140 5:-28705358 None:intergenic
CTGGTTATGTTGCAGCAGGA+AGG 0.526430 5:+28706903 MsG0580025986.01.T01:CDS
GGTTATGTTGCAGCAGGAAG+GGG 0.534822 5:+28706905 MsG0580025986.01.T01:CDS
AATAAATCGCATCGTACAGC+AGG 0.536477 5:-28706958 None:intergenic
ATTGATCAGATTAGCAGCAA+TGG 0.537753 5:-28707130 None:intergenic
TCCCTGCATCTACTCTGAAA+AGG 0.539900 5:+28703778 MsG0580025986.01.T01:CDS
AGGTTGATGAAATATAGAAA+TGG 0.540588 5:-28703492 None:intergenic
AAAGTAAGGTTACTTCCTGA+AGG 0.543660 5:-28703728 None:intergenic
CTGTGACTTATTATCTGAAG+CGG 0.556905 5:-28705308 None:intergenic
TGAAGAAAATAAAATTAGTG+TGG 0.564322 5:-28706981 None:intergenic
ATGTCTGGTTATGTTGCAGC+AGG 0.568805 5:+28706899 MsG0580025986.01.T01:CDS
AAACAAAACCTCAGAAAACT+CGG 0.582634 5:+28705179 MsG0580025986.01.T01:CDS
GAGTAGATGCAGGGAACACA+AGG 0.584511 5:-28703770 None:intergenic
CAGGGAACACAAGGACCAGA+AGG 0.593395 5:-28703761 None:intergenic
GAAGATTCTGAAAATGGACA+TGG 0.623119 5:+28703668 MsG0580025986.01.T01:CDS
TGCTGCAACATAACCAGACA+TGG 0.629175 5:-28706897 None:intergenic
GAAGGGGTCAGACAAACTCT+CGG 0.652174 5:+28706921 MsG0580025986.01.T01:CDS
AAGATTCTGAAAATGGACAT+GGG 0.662218 5:+28703669 MsG0580025986.01.T01:CDS
AGAGATTAAACATTCAACGA+AGG 0.680316 5:+28705147 MsG0580025986.01.T01:CDS
AATATCGCTGTAGTGAGACA+GGG 0.738319 5:+28705101 MsG0580025986.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGATATTTTATTTTGTAAT+AGG + Chr5:28707021-28707040 MsG0580025986.01.T01:three_prime_UTR 10.0%
!! AAATCAAACATCTTAAAATT+TGG + Chr5:28706013-28706032 MsG0580025986.01.T01:intron 15.0%
!! AATATATATGCATATATGAA+TGG - Chr5:28705616-28705635 None:intergenic 15.0%
!! AATCAAACATCTTAAAATTT+GGG + Chr5:28706014-28706033 MsG0580025986.01.T01:intron 15.0%
!! AATTGAAGTTATTCATAATT+AGG + Chr5:28703843-28703862 MsG0580025986.01.T01:intron 15.0%
!! ATTGAAGTTATTCATAATTA+GGG + Chr5:28703844-28703863 MsG0580025986.01.T01:intron 15.0%
!!! TATAATAATAAATCTGAGAT+AGG - Chr5:28705416-28705435 None:intergenic 15.0%
!!! TATAATTCTAAAATAACAGA+AGG - Chr5:28703824-28703843 None:intergenic 15.0%
!!! TTTTTCTTGTTATTTGAATT+GGG + Chr5:28703639-28703658 MsG0580025986.01.T01:intron 15.0%
!!! TTTTTGATAGAATAAAGTTT+AGG - Chr5:28704237-28704256 None:intergenic 15.0%
!! TAGTTAACAATAAAGTAAAG+AGG - Chr5:28705046-28705065 None:intergenic 20.0%
!! TGAAGAAAATAAAATTAGTG+TGG - Chr5:28706984-28707003 None:intergenic 20.0%
!!! ATGTCATTTTGTCAAATTTA+CGG + Chr5:28704440-28704459 MsG0580025986.01.T01:intron 20.0%
!!! CTTTTTCTTGTTATTTGAAT+TGG + Chr5:28703638-28703657 MsG0580025986.01.T01:intron 20.0%
! AACAGAAATGGAAGAAAAAT+TGG - Chr5:28703464-28703483 None:intergenic 25.0%
! ATATGGTTCATCTATTTAAG+CGG - Chr5:28704856-28704875 None:intergenic 25.0%
! ATCCAATACAAATCCAAATA+TGG + Chr5:28706139-28706158 MsG0580025986.01.T01:intron 25.0%
! ATCCTATAATATCAACACAA+AGG - Chr5:28706703-28706722 None:intergenic 25.0%
! ATTATACATTGGAATCTCTA+AGG + Chr5:28706163-28706182 MsG0580025986.01.T01:intron 25.0%
! CATAATTCTCTGTAATATCA+AGG - Chr5:28704064-28704083 None:intergenic 25.0%
! CCAAATATGGTATTATACAT+TGG + Chr5:28706152-28706171 MsG0580025986.01.T01:intron 25.0%
! CCAATGTATAATACCATATT+TGG - Chr5:28706155-28706174 None:intergenic 25.0%
! CTTGATATTACAGAGAATTA+TGG + Chr5:28704062-28704081 MsG0580025986.01.T01:intron 25.0%
! GAATAAAGTTTAGGTAAGTT+AGG - Chr5:28704228-28704247 None:intergenic 25.0%
! GATAAATCTTATTCTGTGTT+CGG + Chr5:28705899-28705918 MsG0580025986.01.T01:intron 25.0%
! GTCAGTTATGTTCATAAATT+AGG + Chr5:28705851-28705870 MsG0580025986.01.T01:intron 25.0%
! GTTATGTTCATAAATTAGGA+CGG + Chr5:28705855-28705874 MsG0580025986.01.T01:intron 25.0%
! TACCATATTTGGATTTGTAT+TGG - Chr5:28706144-28706163 None:intergenic 25.0%
! TAGAAAAGAAAAGAGAATCA+TGG + Chr5:28704258-28704277 MsG0580025986.01.T01:intron 25.0%
! TTAATCTCTTCACATTTGAA+TGG - Chr5:28705136-28705155 None:intergenic 25.0%
! TTATTAGCAATCTGTCAATA+GGG + Chr5:28705684-28705703 MsG0580025986.01.T01:intron 25.0%
! TTTATTAGCAATCTGTCAAT+AGG + Chr5:28705683-28705702 MsG0580025986.01.T01:intron 25.0%
!! ATCTTTTAAATTGCTCGAAT+TGG + Chr5:28704812-28704831 MsG0580025986.01.T01:intron 25.0%
!! ATGCTTTACAAAACTTCTTT+TGG - Chr5:28704709-28704728 None:intergenic 25.0%
!! TCTACTTTGGAAATTTCTAA+TGG + Chr5:28705202-28705221 MsG0580025986.01.T01:CDS 25.0%
!! TCTTTGTTATATGTATGCTT+GGG + Chr5:28704968-28704987 MsG0580025986.01.T01:intron 25.0%
!! TCTTTTAAATTGCTCGAATT+GGG + Chr5:28704813-28704832 MsG0580025986.01.T01:intron 25.0%
!!! ACAATTAAGGTTTTGAATAG+TGG + Chr5:28704000-28704019 MsG0580025986.01.T01:intron 25.0%
!!! AGGTTGATGAAATATAGAAA+TGG - Chr5:28703495-28703514 None:intergenic 25.0%
!!! ATTGATTTTATGTCTACGTT+AGG + Chr5:28704930-28704949 MsG0580025986.01.T01:intron 25.0%
!!! CATTGTTTTTCTTAAATTCC+CGG - Chr5:28706379-28706398 None:intergenic 25.0%
!!! CCACTTATAAACACTTTTTA+AGG + Chr5:28706088-28706107 MsG0580025986.01.T01:intron 25.0%
!!! CCTTAAAAAGTGTTTATAAG+TGG - Chr5:28706091-28706110 None:intergenic 25.0%
!!! GTATTGTTATGTTAGTTTGT+TGG + Chr5:28706314-28706333 MsG0580025986.01.T01:intron 25.0%
!!! TATGTTAGTTTGTTGGAATT+AGG + Chr5:28706321-28706340 MsG0580025986.01.T01:intron 25.0%
!!! TGAATTCATTGCTTTTTCAT+CGG - Chr5:28703432-28703451 None:intergenic 25.0%
!!! TGTTAACTACAAGCTTTTTT+GGG + Chr5:28705057-28705076 MsG0580025986.01.T01:intron 25.0%
!!! TTGTTAACTACAAGCTTTTT+TGG + Chr5:28705056-28705075 MsG0580025986.01.T01:intron 25.0%
AAAAAGAAGGGGTTTGAATT+TGG + Chr5:28703972-28703991 MsG0580025986.01.T01:intron 30.0%
AAACAAAACCTCAGAAAACT+CGG + Chr5:28705179-28705198 MsG0580025986.01.T01:CDS 30.0%
AAACCTCATTTAACGACAAA+CGG - Chr5:28706772-28706791 None:intergenic 30.0%
AAACGGGATGGATATTATTA+AGG - Chr5:28706206-28706225 None:intergenic 30.0%
AACCTTAAGGTGAATAAATC+GGG - Chr5:28703920-28703939 None:intergenic 30.0%
AAGAACTAACGAGATAAAGA+CGG - Chr5:28706467-28706486 None:intergenic 30.0%
AAGCCTTTGATAAGAAATGT+CGG - Chr5:28704358-28704377 None:intergenic 30.0%
AATAGGAAATTTCGAGATTC+AGG + Chr5:28707038-28707057 MsG0580025986.01.T01:three_prime_UTR 30.0%
ACTTGACCAGAAAAAAAGAA+GGG + Chr5:28703960-28703979 MsG0580025986.01.T01:intron 30.0%
AGAGATTAAACATTCAACGA+AGG + Chr5:28705147-28705166 MsG0580025986.01.T01:CDS 30.0%
AGTTTCAAAGAAAAACCTTC+AGG + Chr5:28703713-28703732 MsG0580025986.01.T01:CDS 30.0%
ATGTATAGTACAAAGTGAGA+AGG - Chr5:28704996-28705015 None:intergenic 30.0%
CAACCTTAAGGTGAATAAAT+CGG - Chr5:28703921-28703940 None:intergenic 30.0%
CATATACCTGAGAAAAAAGA+AGG + Chr5:28706868-28706887 MsG0580025986.01.T01:CDS 30.0%
CATATAGATGAACACGTTTA+TGG + Chr5:28705238-28705257 MsG0580025986.01.T01:CDS 30.0%
CGGGAATTTAAGAAAAACAA+TGG + Chr5:28706377-28706396 MsG0580025986.01.T01:intron 30.0%
CGTATTCCACATAATATACA+CGG - Chr5:28706802-28706821 None:intergenic 30.0%
CTTCACATTTGAATGGAATT+CGG - Chr5:28705129-28705148 None:intergenic 30.0%
GTAAGACACACAAAAACAAA+GGG - Chr5:28704491-28704510 None:intergenic 30.0%
TAAAGCAGAAAGTTAGATCA+TGG - Chr5:28706292-28706311 None:intergenic 30.0%
TAATATCAACACAAAGGTCA+AGG - Chr5:28706697-28706716 None:intergenic 30.0%
TATCAAAAACCGTTATGTTG+TGG + Chr5:28704321-28704340 MsG0580025986.01.T01:intron 30.0%
TATTAGCAATCTGTCAATAG+GGG + Chr5:28705685-28705704 MsG0580025986.01.T01:intron 30.0%
TGATCTAACTTTCTGCTTTA+TGG + Chr5:28706292-28706311 MsG0580025986.01.T01:intron 30.0%
TGTAAGACACACAAAAACAA+AGG - Chr5:28704492-28704511 None:intergenic 30.0%
TGTTAACCGTGTATATTATG+TGG + Chr5:28706793-28706812 MsG0580025986.01.T01:intron 30.0%
TTCGGAAAATTGAAGAAGTA+TGG + Chr5:28705917-28705936 MsG0580025986.01.T01:intron 30.0%
TTTGTTCATAGCTTTCTGTT+TGG + Chr5:28706532-28706551 MsG0580025986.01.T01:intron 30.0%
! AAGATTCTGAAAATGGACAT+GGG + Chr5:28703669-28703688 MsG0580025986.01.T01:CDS 30.0%
! ACAAAACTTCTTTTGGATGA+GGG - Chr5:28704702-28704721 None:intergenic 30.0%
! ATTTTCTTGTTGCTCATTAG+CGG + Chr5:28706839-28706858 MsG0580025986.01.T01:CDS 30.0%
! CTCTTTGTTATATGTATGCT+TGG + Chr5:28704967-28704986 MsG0580025986.01.T01:intron 30.0%
! GACCTTTGTGTTGATATTAT+AGG + Chr5:28706698-28706717 MsG0580025986.01.T01:intron 30.0%
! TACAAAACTTCTTTTGGATG+AGG - Chr5:28704703-28704722 None:intergenic 30.0%
! TTTCTTATCAAAGGCTTGTT+TGG + Chr5:28704361-28704380 MsG0580025986.01.T01:intron 30.0%
!! GTTTGGTTCTTTAAATCTCA+AGG + Chr5:28705569-28705588 MsG0580025986.01.T01:intron 30.0%
!!! TCTTTTGCCTTGTTATTCAT+AGG + Chr5:28705020-28705039 MsG0580025986.01.T01:intron 30.0%
AAAGACTGAAACGCTTACAA+AGG - Chr5:28704184-28704203 None:intergenic 35.0%
AAAGAGGCCTATGAATAACA+AGG - Chr5:28705030-28705049 None:intergenic 35.0%
AAAGTAAGGTTACTTCCTGA+AGG - Chr5:28703731-28703750 None:intergenic 35.0%
AACCTCATTTAACGACAAAC+GGG - Chr5:28706771-28706790 None:intergenic 35.0%
AACTAATGTGTCCAACTTAG+AGG + Chr5:28705516-28705535 MsG0580025986.01.T01:intron 35.0%
AAGTGTTTATAAGTGGTGTG+CGG - Chr5:28706084-28706103 None:intergenic 35.0%
AGCTTCTGAACTTGGTTTAA+TGG + Chr5:28705446-28705465 MsG0580025986.01.T01:intron 35.0%
AGGCCATATATCATCCAATA+CGG + Chr5:28706108-28706127 MsG0580025986.01.T01:intron 35.0%
ATAAATCGGGAAATTCAACC+TGG - Chr5:28703907-28703926 None:intergenic 35.0%
ATAAGAGTTCGTACACCATA+TGG - Chr5:28705948-28705967 None:intergenic 35.0%
ATACCTGAGAAAAAAGAAGG+CGG + Chr5:28706871-28706890 MsG0580025986.01.T01:CDS 35.0%
ATCCCGTATTGGATGATATA+TGG - Chr5:28706114-28706133 None:intergenic 35.0%
ATGCAGATAAATGCAGCTTA+TGG - Chr5:28705762-28705781 None:intergenic 35.0%
ATGGCGAAGAATAACAGAAA+TGG - Chr5:28703476-28703495 None:intergenic 35.0%
ATTAGCAATCTGTCAATAGG+GGG + Chr5:28705686-28705705 MsG0580025986.01.T01:intron 35.0%
CAGAGAATTATGGCCAATAA+AGG + Chr5:28704072-28704091 MsG0580025986.01.T01:intron 35.0%
CTACAAAGACCACAACATAA+CGG - Chr5:28704333-28704352 None:intergenic 35.0%
CTATTTAAGCGGTTTGATTG+TGG - Chr5:28704845-28704864 None:intergenic 35.0%
CTCAAGGAAGAATGTGTAAT+TGG + Chr5:28705585-28705604 MsG0580025986.01.T01:intron 35.0%
CTGTGACTTATTATCTGAAG+CGG - Chr5:28705311-28705330 None:intergenic 35.0%
CTTGACCAGAAAAAAAGAAG+GGG + Chr5:28703961-28703980 MsG0580025986.01.T01:intron 35.0%
GACTTGACCAGAAAAAAAGA+AGG + Chr5:28703959-28703978 MsG0580025986.01.T01:intron 35.0%
GGTAAAGTTAGAAGAAGCAA+AGG + Chr5:28705718-28705737 MsG0580025986.01.T01:intron 35.0%
TACATTGATATGAGTACGTG+CGG - Chr5:28706420-28706439 None:intergenic 35.0%
TATGTGGAATACGTTGTACA+GGG + Chr5:28706809-28706828 MsG0580025986.01.T01:intron 35.0%
TCACACGCTTTCAAATTTCA+AGG - Chr5:28706655-28706674 None:intergenic 35.0%
TGGCTAGAAATTCAACCTTA+AGG - Chr5:28703933-28703952 None:intergenic 35.0%
TTATGTGGAATACGTTGTAC+AGG + Chr5:28706808-28706827 MsG0580025986.01.T01:intron 35.0%
TTCCCGATTTATTCACCTTA+AGG + Chr5:28703915-28703934 MsG0580025986.01.T01:intron 35.0%
! AAGGAGCACAATCAAAAGTA+AGG - Chr5:28703745-28703764 None:intergenic 35.0%
! ATTTGAAGTGAACATCGAAC+TGG + Chr5:28704766-28704785 MsG0580025986.01.T01:intron 35.0%
! CTAACTCAACTTTTCGAAAC+CGG + Chr5:28706043-28706062 MsG0580025986.01.T01:intron 35.0%
! GAAGATTCTGAAAATGGACA+TGG + Chr5:28703668-28703687 MsG0580025986.01.T01:CDS 35.0%
! TAATATCCATCCCGTTTTAG+TGG + Chr5:28706209-28706228 MsG0580025986.01.T01:intron 35.0%
! TGTTTTTCTTAAATTCCCGG+TGG - Chr5:28706376-28706395 None:intergenic 35.0%
! TTCAGCGAAGATTCTGAAAA+TGG + Chr5:28703662-28703681 MsG0580025986.01.T01:intron 35.0%
! TTTTGTGTGTCTTACACAAG+CGG + Chr5:28704496-28704515 MsG0580025986.01.T01:intron 35.0%
!! AAGAATTACCTTGGTGCTTA+AGG - Chr5:28705813-28705832 None:intergenic 35.0%
!! CATTGATTAGCTTCTGAACT+TGG + Chr5:28705438-28705457 MsG0580025986.01.T01:intron 35.0%
!! GAATTTGGCACTGACAATTA+AGG + Chr5:28703987-28704006 MsG0580025986.01.T01:intron 35.0%
!! GTGATGTCAAAGTGTTGAAT+GGG + Chr5:28704629-28704648 MsG0580025986.01.T01:intron 35.0%
!! TGATGTCAAAGTGTTGAATG+GGG + Chr5:28704630-28704649 MsG0580025986.01.T01:intron 35.0%
!! TGTGATGTCAAAGTGTTGAA+TGG + Chr5:28704628-28704647 MsG0580025986.01.T01:intron 35.0%
!!! CTTTTTTGGGTGGAGTTATA+GGG + Chr5:28705070-28705089 MsG0580025986.01.T01:intron 35.0%
!!! TAACTACAAGCTTTTTTGGG+TGG + Chr5:28705060-28705079 MsG0580025986.01.T01:intron 35.0%
!!! TCAAACCCCTTCTTTTTTTC+TGG - Chr5:28703969-28703988 None:intergenic 35.0%
AAATATCGCTGTAGTGAGAC+AGG + Chr5:28705100-28705119 MsG0580025986.01.T01:CDS 40.0%
AACCACAACAAGACTACGAT+CGG - Chr5:28704294-28704313 None:intergenic 40.0%
AACTTCTCTTCAGTATCTGC+AGG - Chr5:28705361-28705380 None:intergenic 40.0%
AATAAATCGCATCGTACAGC+AGG - Chr5:28706961-28706980 None:intergenic 40.0%
AATATCGCTGTAGTGAGACA+GGG + Chr5:28705101-28705120 MsG0580025986.01.T01:CDS 40.0%
AATGTACCTGTAGTGCTTGA+GGG + Chr5:28706434-28706453 MsG0580025986.01.T01:intron 40.0%
AATGTGAGGACTTCTTTGGT+GGG + Chr5:28704145-28704164 MsG0580025986.01.T01:intron 40.0%
ACAAAAACAAAGGGCCAAAG+AGG - Chr5:28704482-28704501 None:intergenic 40.0%
ACAGTCACAGAGAACATTAC+TGG + Chr5:28705276-28705295 MsG0580025986.01.T01:CDS 40.0%
ACATCGAACTGGTGAAATCT+TGG + Chr5:28704777-28704796 MsG0580025986.01.T01:intron 40.0%
AGAGAGAGAAAGAGAGAGAT+TGG - Chr5:28703551-28703570 None:intergenic 40.0%
CAACCTTCAATACTCGCTTT+AGG + Chr5:28703509-28703528 MsG0580025986.01.T01:CDS 40.0%
CACAGCTTAATCCTCTAAGT+TGG - Chr5:28705530-28705549 None:intergenic 40.0%
CATCGAACTGGTGAAATCTT+GGG + Chr5:28704778-28704797 MsG0580025986.01.T01:intron 40.0%
CCAAAGAGGATAGGTTACAA+AGG - Chr5:28704468-28704487 None:intergenic 40.0%
CCTTTGTAACCTATCCTCTT+TGG + Chr5:28704465-28704484 MsG0580025986.01.T01:intron 40.0%
CGCTTCAGATAATAAGTCAC+AGG + Chr5:28705309-28705328 MsG0580025986.01.T01:CDS 40.0%
GAAAGTTAGATCATGGAACC+AGG - Chr5:28706285-28706304 None:intergenic 40.0%
GAATTATGGCCAATAAAGGC+TGG + Chr5:28704076-28704095 MsG0580025986.01.T01:intron 40.0%
GGCCATATATCATCCAATAC+GGG + Chr5:28706109-28706128 MsG0580025986.01.T01:intron 40.0%
GGGTGCAATATTTATTGTCC+TGG + Chr5:28706264-28706283 MsG0580025986.01.T01:intron 40.0%
TACCCGTTTGTCGTTAAATG+AGG + Chr5:28706766-28706785 MsG0580025986.01.T01:intron 40.0%
TCAGAAAACTCGGTCTACTT+TGG + Chr5:28705189-28705208 MsG0580025986.01.T01:CDS 40.0%
TCTGAAAATGGACATGGGTT+TGG + Chr5:28703674-28703693 MsG0580025986.01.T01:CDS 40.0%
TTCTATAAGCTCGACTACTG+TGG - Chr5:28705654-28705673 None:intergenic 40.0%
TTGGATGAGAAATCCCGTAT+TGG - Chr5:28706125-28706144 None:intergenic 40.0%
TTTGTGTGTCTTACACAAGC+GGG + Chr5:28704497-28704516 MsG0580025986.01.T01:intron 40.0%
! AAAGTAGACCGAGTTTTCTG+AGG - Chr5:28705190-28705209 None:intergenic 40.0%
! AACCTTTTCAGAGTAGATGC+AGG - Chr5:28703783-28703802 None:intergenic 40.0%
! ACCTTTTCAGAGTAGATGCA+GGG - Chr5:28703782-28703801 None:intergenic 40.0%
! GCACCGACATTTCTTATCAA+AGG + Chr5:28704352-28704371 MsG0580025986.01.T01:intron 40.0%
! GCTTTTCGCAAGAATTACCT+TGG - Chr5:28705822-28705841 None:intergenic 40.0%
! GTCTGCTGCTATTTAGTGTT+TGG + Chr5:28705552-28705571 MsG0580025986.01.T01:intron 40.0%
! TAGGACTACTAGTTCTCACA+GGG + Chr5:28706340-28706359 MsG0580025986.01.T01:intron 40.0%
! TTAGGACTACTAGTTCTCAC+AGG + Chr5:28706339-28706358 MsG0580025986.01.T01:intron 40.0%
! TTCTTTGGTGGGTGATTTGT+AGG + Chr5:28704156-28704175 MsG0580025986.01.T01:intron 40.0%
!! AAAGTGTTGAATGGGGAATG+GGG + Chr5:28704637-28704656 MsG0580025986.01.T01:intron 40.0%
!! ACTTTTGATTGTGCTCCTTC+TGG + Chr5:28703746-28703765 MsG0580025986.01.T01:CDS 40.0%
!! AGGTTGAATTTCTAGCCACT+AGG + Chr5:28703935-28703954 MsG0580025986.01.T01:intron 40.0%
!! CAAAGTGTTGAATGGGGAAT+GGG + Chr5:28704636-28704655 MsG0580025986.01.T01:intron 40.0%
!! CTCTGTCAACTTGTTACAAG+AGG + Chr5:28706571-28706590 MsG0580025986.01.T01:intron 40.0%
!! TCAAAGTGTTGAATGGGGAA+TGG + Chr5:28704635-28704654 MsG0580025986.01.T01:intron 40.0%
!! TGACCTAAAGCGAGTATTGA+AGG - Chr5:28703515-28703534 None:intergenic 40.0%
!!! AAGGTTTTGAATAGTGGTCG+CGG + Chr5:28704006-28704025 MsG0580025986.01.T01:intron 40.0%
!!! GCTTTTTTGGGTGGAGTTAT+AGG + Chr5:28705069-28705088 MsG0580025986.01.T01:intron 40.0%
AACAAAGGGCCAAAGAGGAT+AGG - Chr5:28704477-28704496 None:intergenic 45.0%
AGAGTTCGTACACCATATGG+TGG - Chr5:28705945-28705964 None:intergenic 45.0%
AGGAAGGGTAGCCACTAAAA+CGG - Chr5:28706223-28706242 None:intergenic 45.0%
ATGTCTGGTTATGTTGCAGC+AGG + Chr5:28706899-28706918 MsG0580025986.01.T01:CDS 45.0%
CAATGTACCTGTAGTGCTTG+AGG + Chr5:28706433-28706452 MsG0580025986.01.T01:intron 45.0%
CAATGTGAGGACTTCTTTGG+TGG + Chr5:28704144-28704163 MsG0580025986.01.T01:intron 45.0%
CACCAAAGAAGTCCTCACAT+TGG - Chr5:28704146-28704165 None:intergenic 45.0%
CCAACTAAGCCAGCCTTTAT+TGG - Chr5:28704088-28704107 None:intergenic 45.0%
CCATATTCAGTTCCGTTCCA+TGG + Chr5:28704870-28704889 MsG0580025986.01.T01:intron 45.0%
CCATGGAACGGAACTGAATA+TGG - Chr5:28704873-28704892 None:intergenic 45.0%
CTGGTGAAATCTTGGGATCA+TGG + Chr5:28704785-28704804 MsG0580025986.01.T01:intron 45.0%
GAAGAGAAGTTGTCAGTGCT+TGG + Chr5:28705370-28705389 MsG0580025986.01.T01:CDS 45.0%
TGAATAGTGGTCGCGGTTTA+AGG + Chr5:28704013-28704032 MsG0580025986.01.T01:intron 45.0%
TGCCAATGTGAGGACTTCTT+TGG + Chr5:28704141-28704160 MsG0580025986.01.T01:intron 45.0%
TGCTGCAACATAACCAGACA+TGG - Chr5:28706900-28706919 None:intergenic 45.0%
TGGTTATGTTGCAGCAGGAA+GGG + Chr5:28706904-28706923 MsG0580025986.01.T01:CDS 45.0%
TTAGGTAAGTTAGGCTCCGA+GGG - Chr5:28704219-28704238 None:intergenic 45.0%
TTGTGTGTCTTACACAAGCG+GGG + Chr5:28704498-28704517 MsG0580025986.01.T01:intron 45.0%
TTTAGGTAAGTTAGGCTCCG+AGG - Chr5:28704220-28704239 None:intergenic 45.0%
! AGACCACGTCTTGAGAGTAT+AGG + Chr5:28705981-28706000 MsG0580025986.01.T01:intron 45.0%
! AGGACTACTAGTTCTCACAG+GGG + Chr5:28706341-28706360 MsG0580025986.01.T01:intron 45.0%
! GACCACGTCTTGAGAGTATA+GGG + Chr5:28705982-28706001 MsG0580025986.01.T01:intron 45.0%
! TCCCTGCATCTACTCTGAAA+AGG + Chr5:28703778-28703797 MsG0580025986.01.T01:CDS 45.0%
!! AGAAGTATGGTGCCACCATA+TGG + Chr5:28705930-28705949 MsG0580025986.01.T01:intron 45.0%
!! CCAATAAAGGCTGGCTTAGT+TGG + Chr5:28704085-28704104 MsG0580025986.01.T01:intron 45.0%
!! CTTTTCGAAACCGGCTTAGA+AGG + Chr5:28706052-28706071 MsG0580025986.01.T01:intron 45.0%
!!! GTTGTCAGTGCTTGGTTTTG+AGG + Chr5:28705378-28705397 MsG0580025986.01.T01:CDS 45.0%
!!! AAAAAAAAATTATTGATTTT+AGG + Chr5:28704544-28704563 MsG0580025986.01.T01:intron 5.0%
AGAAGTCCTCACATTGGCAG+CGG - Chr5:28704140-28704159 None:intergenic 50.0%
CAACCTGTCGAACCATGGAA+CGG - Chr5:28704885-28704904 None:intergenic 50.0%
CAGTTCAACCTGTCGAACCA+TGG - Chr5:28704890-28704909 None:intergenic 50.0%
CCTTCAGGGTCGTAAAGACA+CGG + Chr5:28706243-28706262 MsG0580025986.01.T01:intron 50.0%
CTGGTTATGTTGCAGCAGGA+AGG + Chr5:28706903-28706922 MsG0580025986.01.T01:CDS 50.0%
CTTCAGGGTCGTAAAGACAC+GGG + Chr5:28706244-28706263 MsG0580025986.01.T01:intron 50.0%
GAAGGGGTCAGACAAACTCT+CGG + Chr5:28706921-28706940 MsG0580025986.01.T01:CDS 50.0%
GAGTAGATGCAGGGAACACA+AGG - Chr5:28703773-28703792 None:intergenic 50.0%
GGAAGGGTAGCCACTAAAAC+GGG - Chr5:28706222-28706241 None:intergenic 50.0%
GGAGTTGACACACCCACAAT+CGG + Chr5:28704106-28704125 MsG0580025986.01.T01:intron 50.0%
GGTTATGTTGCAGCAGGAAG+GGG + Chr5:28706905-28706924 MsG0580025986.01.T01:CDS 50.0%
GTCAATAGGGGGATGTCTGT+TGG + Chr5:28705697-28705716 MsG0580025986.01.T01:intron 50.0%
GTCATGAGCCTTAAGCACCA+AGG + Chr5:28705802-28705821 MsG0580025986.01.T01:intron 50.0%
GTCCCTATACTCTCAAGACG+TGG - Chr5:28705987-28706006 None:intergenic 50.0%
TCCTGTGAGCATAGCACAGT+TGG + Chr5:28703875-28703894 MsG0580025986.01.T01:intron 50.0%
TGTCTTTACGACCCTGAAGG+AGG - Chr5:28706243-28706262 None:intergenic 50.0%
TTACGACCCTGAAGGAGGAA+GGG - Chr5:28706238-28706257 None:intergenic 50.0%
TTTACGACCCTGAAGGAGGA+AGG - Chr5:28706239-28706258 None:intergenic 50.0%
! ACAGGGGCTTTAATCTCCAC+CGG + Chr5:28706357-28706376 MsG0580025986.01.T01:intron 50.0%
! GTTCGACAGGTTGAACTGTC+TGG + Chr5:28704892-28704911 MsG0580025986.01.T01:intron 50.0%
! TTTCTGGTCAAGTCGCCTAG+TGG - Chr5:28703953-28703972 None:intergenic 50.0%
!! AGCCGATCGTAGTCTTGTTG+TGG + Chr5:28704289-28704308 MsG0580025986.01.T01:intron 50.0%
!!! CAGCCGCCTTCTTTTTTCTC+AGG - Chr5:28706877-28706896 None:intergenic 50.0%
AGCGAACCCTCAAGCACTAC+AGG - Chr5:28706443-28706462 None:intergenic 55.0%
AGCGGGAGTTAGACCGATTG+TGG - Chr5:28704122-28704141 None:intergenic 55.0%
CAGGGAACACAAGGACCAGA+AGG - Chr5:28703764-28703783 None:intergenic 55.0%
CCGTGTCTTTACGACCCTGA+AGG - Chr5:28706246-28706265 None:intergenic 55.0%
CTTTGAGCCCAGTGAACCCT+CGG + Chr5:28704200-28704219 MsG0580025986.01.T01:intron 55.0%
GAAGTCCTCACATTGGCAGC+GGG - Chr5:28704139-28704158 None:intergenic 55.0%
GCCAACTGTGCTATGCTCAC+AGG - Chr5:28703879-28703898 None:intergenic 55.0%
GCGGGAGTTAGACCGATTGT+GGG - Chr5:28704121-28704140 None:intergenic 55.0%
GGGTAGCCACTAAAACGGGA+TGG - Chr5:28706218-28706237 None:intergenic 55.0%
GTTCCGTTCCATGGTTCGAC+AGG + Chr5:28704879-28704898 MsG0580025986.01.T01:intron 55.0%
TAACTCCCGCTGCCAATGTG+AGG + Chr5:28704131-28704150 MsG0580025986.01.T01:intron 55.0%
TAGCACAGTTGGCAACGACC+AGG + Chr5:28703886-28703905 MsG0580025986.01.T01:intron 55.0%
TGGCTACCCTTCCTCCTTCA+GGG + Chr5:28706229-28706248 MsG0580025986.01.T01:intron 55.0%
TTAGGCTCCGAGGGTTCACT+GGG - Chr5:28704210-28704229 None:intergenic 55.0%
! CAGGGGCTTTAATCTCCACC+GGG + Chr5:28706358-28706377 MsG0580025986.01.T01:intron 55.0%
AAGAAGGCGGCTGCCATGTC+TGG + Chr5:28706884-28706903 MsG0580025986.01.T01:CDS 60.0%
GCGGTCGTCACCTTCTAAGC+CGG - Chr5:28706065-28706084 None:intergenic 60.0%
GTGGCTACCCTTCCTCCTTC+AGG + Chr5:28706228-28706247 MsG0580025986.01.T01:intron 60.0%
GTTAGGCTCCGAGGGTTCAC+TGG - Chr5:28704211-28704230 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr5 gene 28703387 28707138 28703387 ID=MsG0580025986.01;Name=MsG0580025986.01
Chr5 mRNA 28703387 28707138 28703387 ID=MsG0580025986.01.T01;Parent=MsG0580025986.01;Name=MsG0580025986.01.T01;_AED=0.43;_eAED=0.43;_QI=56|1|1|1|0.66|0.75|4|189|219
Chr5 exon 28703387 28703540 28703387 ID=MsG0580025986.01.T01:exon:6992;Parent=MsG0580025986.01.T01
Chr5 exon 28703667 28703799 28703667 ID=MsG0580025986.01.T01:exon:6993;Parent=MsG0580025986.01.T01
Chr5 exon 28705091 28705399 28705091 ID=MsG0580025986.01.T01:exon:6994;Parent=MsG0580025986.01.T01
Chr5 exon 28706830 28707138 28706830 ID=MsG0580025986.01.T01:exon:6995;Parent=MsG0580025986.01.T01
Chr5 five_prime_UTR 28703387 28703442 28703387 ID=MsG0580025986.01.T01:five_prime_utr;Parent=MsG0580025986.01.T01
Chr5 CDS 28703443 28703540 28703443 ID=MsG0580025986.01.T01:cds;Parent=MsG0580025986.01.T01
Chr5 CDS 28703667 28703799 28703667 ID=MsG0580025986.01.T01:cds;Parent=MsG0580025986.01.T01
Chr5 CDS 28705091 28705399 28705091 ID=MsG0580025986.01.T01:cds;Parent=MsG0580025986.01.T01
Chr5 CDS 28706830 28706949 28706830 ID=MsG0580025986.01.T01:cds;Parent=MsG0580025986.01.T01
Chr5 three_prime_UTR 28706950 28707138 28706950 ID=MsG0580025986.01.T01:three_prime_utr;Parent=MsG0580025986.01.T01
Gene Sequence

>MsG0580025986.01.T01

ATGAATTCATCAAATTCACCAATTTTTCTTCCATTTCTGTTATTCTTCGCCATTTCTATATTTCATCAACCTTCAATACTCGCTTTAGGTCAACAAACCGAAGATTCTGAAAATGGACATGGGTTTGGACGCAGAGTTCTTATGAGTTTCAAAGAAAAACCTTCAGGAAGTAACCTTACTTTTGATTGTGCTCCTTCTGGTCCTTGTGTTCCCTGCATCTACTCTGAAAAGGGTGATGAGAAATATCGCTGTAGTGAGACAGGGTACCGAATTCCATTCAAATGTGAAGAGATTAAACATTCAACGAAGGATGCTAAGAAAACAAAACCTCAGAAAACTCGGTCTACTTTGGAAATTTCTAATGGTAGTGCAAAATCTCATATAGATGAACACGTTTATGGAGAGTTCATAACTTCACAGTCACAGAGAACATTACTGGATGATTCTTCCGCTTCAGATAATAAGTCACAGGCTTATGTCACTTACAGAAGCTGTATACCTGCAGATACTGAAGAGAAGTTGTCAGTGCTTGGTTTTGAGGGTGCTGTAATTTTCTTGTTGCTCATTAGCGGATCATTCATATACCTGAGAAAAAAGAAGGCGGCTGCCATGTCTGGTTATGTTGCAGCAGGAAGGGGTCAGACAAACTCTCGGTATTAA

Protein sequence

>MsG0580025986.01.T01

MNSSNSPIFLPFLLFFAISIFHQPSILALGQQTEDSENGHGFGRRVLMSFKEKPSGSNLTFDCAPSGPCVPCIYSEKGDEKYRCSETGYRIPFKCEEIKHSTKDAKKTKPQKTRSTLEISNGSAKSHIDEHVYGEFITSQSQRTLLDDSSASDNKSQAYVTYRSCIPADTEEKLSVLGFEGAVIFLLLISGSFIYLRKKKAAAMSGYVAAGRGQTNSRY*