AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580025788.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025788.01.T01 MTR_5g034570 39.583 192 50 8 3 129 7 197 2.73e-22 87.8
MsG0580025788.01.T01 MTR_5g034570 39.894 188 48 7 3 126 7 193 4.83e-22 87.4
MsG0580025788.01.T01 MTR_5g034570 40.212 189 47 8 3 126 7 194 6.04e-22 87.0
MsG0580025788.01.T01 MTR_5g034570 66.667 51 14 2 3 51 7 56 2.01e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 45 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTATTGTTAATTAGGATTT+TGG 0.117420 5:+24152581 MsG0580025788.01.T01:intron
AGAGAGGAGACGGCGGGAAC+GGG 0.321896 5:-24152255 None:intergenic
TAAATGATACAGGGTCTTAA+AGG 0.345583 5:+24154169 MsG0580025788.01.T01:intron
GCAACGAACCACCGGGTGAT+TGG 0.360230 5:-24152322 None:intergenic
GGTATCTCCTCGTTGGGGTT+GGG 0.361650 5:-24152225 None:intergenic
GAGAGAGGAGACGGCGGGAA+CGG 0.368696 5:-24152256 None:intergenic
GAAGGAGGTATCTCCTCGTT+GGG 0.385251 5:-24152231 None:intergenic
TCGGCGGGAGTGAGGGTAAG+AGG 0.399040 5:-24152279 None:intergenic
GAGACGGCGGGAACGGGAGA+AGG 0.401858 5:-24152249 None:intergenic
TGGCCGACAACGGCGAGAAC+GGG 0.423702 5:+24152115 MsG0580025788.01.T01:CDS
TGTCGGCGCGAGCGATTAAA+CGG 0.427430 5:-24152143 None:intergenic
AGGTATCTCCTCGTTGGGGT+TGG 0.429992 5:-24152226 None:intergenic
TCGAAATACCATTGCTACTC+AGG 0.447368 5:+24152613 MsG0580025788.01.T01:CDS
TATCCCGTTCTCGCCGTTGT+CGG 0.481934 5:-24152118 None:intergenic
GAGATATCTCGCGCTATCGT+TGG 0.485269 5:+24152168 MsG0580025788.01.T01:CDS
CCCGTTGGTTTGCTGAAGAT+AGG 0.490333 5:-24154203 None:intergenic
GGTAAGAGGGAGAGAGGAGA+CGG 0.491783 5:-24152265 None:intergenic
TCTATTTCGTCGATGTCGGC+GGG 0.498150 5:-24152294 None:intergenic
GCAGGAAGTAGAGCAGCATC+AGG 0.498588 5:+24155182 MsG0580025788.01.T01:intron
CGTCGATGTCGGCGGGAGTG+AGG 0.503830 5:-24152287 None:intergenic
AGCGCGAGATATCTCGTTGT+CGG 0.508711 5:-24152160 None:intergenic
GTTCCAAGCAGTGGATCTAC+TGG 0.509185 5:+24155225 MsG0580025788.01.T01:CDS
GTCTATTTCGTCGATGTCGG+CGG 0.510243 5:-24152295 None:intergenic
CCTATCTTCAGCAAACCAAC+GGG 0.513673 5:+24154203 MsG0580025788.01.T01:CDS
AGAGGGAGAGAGGAGACGGC+GGG 0.513727 5:-24152261 None:intergenic
AAGAGGGAGAGAGGAGACGG+CGG 0.516642 5:-24152262 None:intergenic
AGTGAGGGTAAGAGGGAGAG+AGG 0.520285 5:-24152271 None:intergenic
TATGTCTATTTCGTCGATGT+CGG 0.521128 5:-24152298 None:intergenic
GTCGATGTCGGCGGGAGTGA+GGG 0.522981 5:-24152286 None:intergenic
ATGGCCGACAACGGCGAGAA+CGG 0.525315 5:+24152114 MsG0580025788.01.T01:CDS
AGAAGGAGGTATCTCCTCGT+TGG 0.543463 5:-24152232 None:intergenic
ACGGCGGGAACGGGAGAAGG+AGG 0.547882 5:-24152246 None:intergenic
AACCAACGGGTACTTTAGAC+AGG 0.554816 5:+24154216 MsG0580025788.01.T01:CDS
ACCTATCTTCAGCAAACCAA+CGG 0.555623 5:+24154202 MsG0580025788.01.T01:CDS
GTCGGCGCGAGCGATTAAAC+GGG 0.559713 5:-24152142 None:intergenic
CGGCGGGAGTGAGGGTAAGA+GGG 0.568070 5:-24152278 None:intergenic
AGAGCTGTTGTTCCAAGCAG+TGG 0.579332 5:+24155216 MsG0580025788.01.T01:CDS
CGAAGCAGGATGGCCGACAA+CGG 0.583887 5:+24152105 None:intergenic
ATACCAGTAGATCCACTGCT+TGG 0.584757 5:-24155228 None:intergenic
ATTGCATACCTGAGTAGCAA+TGG 0.599045 5:-24152621 None:intergenic
GACCTGTCTAAAGTACCCGT+TGG 0.631437 5:-24154218 None:intergenic
AAGGAGGTATCTCCTCGTTG+GGG 0.673401 5:-24152230 None:intergenic
AATAGACATATCCAATCACC+CGG 0.682942 5:+24152311 MsG0580025788.01.T01:CDS
CAGGAAGCCCAACCCCAACG+AGG 0.733005 5:+24152218 MsG0580025788.01.T01:CDS
AGACATATCCAATCACCCGG+TGG 0.761992 5:+24152314 MsG0580025788.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATATCTATAATTGCT+TGG + Chr5:24154924-24154943 MsG0580025788.01.T01:intron 15.0%
!! ATAAAAAAAACAATAATGGT+AGG + Chr5:24153443-24153462 MsG0580025788.01.T01:intron 15.0%
!! ATGATTAATTAAAAAACCAA+TGG + Chr5:24153865-24153884 MsG0580025788.01.T01:intron 15.0%
!! TAAAAAAAACAATAATGGTA+GGG + Chr5:24153444-24153463 MsG0580025788.01.T01:intron 15.0%
!! TTAAAAAGTGACAATTAAAA+AGG - Chr5:24152708-24152727 None:intergenic 15.0%
!!! AGCAATTATAGATATTTTTT+TGG - Chr5:24154924-24154943 None:intergenic 15.0%
!! AAAAAAAACAATAATGGTAG+GGG + Chr5:24153445-24153464 MsG0580025788.01.T01:intron 20.0%
!! AAAACATCATTGATGAAAAA+TGG - Chr5:24154281-24154300 None:intergenic 20.0%
!! AAACATCATTGATGAAAAAT+GGG - Chr5:24154280-24154299 None:intergenic 20.0%
!! AATATAGAAAAAGAGTTGAA+CGG - Chr5:24154410-24154429 None:intergenic 20.0%
!! ATTATAATGTTGTCTTATCA+AGG - Chr5:24153843-24153862 None:intergenic 20.0%
!! CATTAAAATCATACATACAA+TGG - Chr5:24155413-24155432 None:intergenic 20.0%
!! TAAACATTACTATTTACTGT+CGG + Chr5:24154894-24154913 MsG0580025788.01.T01:intron 20.0%
!! TAAGATAATAATGAACATTC+AGG + Chr5:24152979-24152998 MsG0580025788.01.T01:intron 20.0%
!! TAAGCAAAAAACAATATTGT+AGG + Chr5:24153157-24153176 MsG0580025788.01.T01:intron 20.0%
!! TATTCTATACTTCAGTTATT+TGG - Chr5:24154310-24154329 None:intergenic 20.0%
!! TCTAAAAGTGACAATTAAAA+AGG + Chr5:24152934-24152953 MsG0580025788.01.T01:intron 20.0%
!! TTAAAAATAGAGAACAAAGT+AGG - Chr5:24153087-24153106 None:intergenic 20.0%
!! TTACCCTTAAATATTTATTG+CGG - Chr5:24152844-24152863 None:intergenic 20.0%
!!! AAAACTTATTTTTAGCATAG+TGG - Chr5:24154644-24154663 None:intergenic 20.0%
!!! ATCCATTTGAAATAAATTGA+AGG - Chr5:24155153-24155172 None:intergenic 20.0%
!!! CATTTTTGCTATTGTTAATT+AGG + Chr5:24152574-24152593 MsG0580025788.01.T01:intron 20.0%
!!! TCCATTTGAAATAAATTGAA+GGG - Chr5:24155152-24155171 None:intergenic 20.0%
!!! TTTGGACTTTTTAAGTAAAA+TGG + Chr5:24153471-24153490 MsG0580025788.01.T01:intron 20.0%
! AAAAAAGTCTATTATGCCAT+TGG - Chr5:24153884-24153903 None:intergenic 25.0%
! AAAGGAAACCAATTAAAAAC+AGG - Chr5:24155262-24155281 None:intergenic 25.0%
! AAGATTGTATAAGGAAAGAA+AGG + Chr5:24153283-24153302 MsG0580025788.01.T01:intron 25.0%
! AAGTGACAATTAAAAAGGAA+CGG + Chr5:24152939-24152958 MsG0580025788.01.T01:intron 25.0%
! AAGTGACAATTAAAAAGGAA+CGG - Chr5:24152958-24152939 None:intergenic 25.0%
! ACCCTTCAATTTATTTCAAA+TGG + Chr5:24155148-24155167 MsG0580025788.01.T01:intron 25.0%
! AGAAGATTTGATGTATTGTT+TGG + Chr5:24153751-24153770 MsG0580025788.01.T01:intron 25.0%
! AGATTGTATAAGGAAAGAAA+GGG + Chr5:24153284-24153303 MsG0580025788.01.T01:intron 25.0%
! ATATAGAAAAAGAGTTGAAC+GGG - Chr5:24154409-24154428 None:intergenic 25.0%
! ATGAATAATCGAATAGTGAA+AGG - Chr5:24152533-24152552 None:intergenic 25.0%
! CAAAACTTTAGTAGAATTCT+TGG + Chr5:24155065-24155084 MsG0580025788.01.T01:intron 25.0%
! CATTCATTTAATGATGTATG+TGG + Chr5:24153182-24153201 MsG0580025788.01.T01:intron 25.0%
! CTTAAGTTATAAACAGCAAA+GGG - Chr5:24155387-24155406 None:intergenic 25.0%
! GTATAATTGGTAGATCTAAT+GGG - Chr5:24155123-24155142 None:intergenic 25.0%
! TCTCCGCAATAAATATTTAA+GGG + Chr5:24152838-24152857 MsG0580025788.01.T01:intron 25.0%
! TGAAAATTGTCTTCCATAAA+GGG - Chr5:24155310-24155329 None:intergenic 25.0%
! TGTATAATTGGTAGATCTAA+TGG - Chr5:24155124-24155143 None:intergenic 25.0%
! TTGAAAATTGTCTTCCATAA+AGG - Chr5:24155311-24155330 None:intergenic 25.0%
! TTTGAAAGTGACAGTTAAAT+AGG + Chr5:24152898-24152917 MsG0580025788.01.T01:intron 25.0%
! TTTGATTGATGCTATAAACA+AGG + Chr5:24154368-24154387 MsG0580025788.01.T01:intron 25.0%
!! AAGAGAAACAAAAAAGGTAT+GGG + Chr5:24153933-24153952 MsG0580025788.01.T01:intron 25.0%
!! AGAATTCTACTAAAGTTTTG+TGG - Chr5:24155065-24155084 None:intergenic 25.0%
!! ATGGAAGACAATTTTCAAAA+GGG + Chr5:24155313-24155332 MsG0580025788.01.T01:intron 25.0%
!! GCTATTGTTAATTAGGATTT+TGG + Chr5:24152581-24152600 MsG0580025788.01.T01:intron 25.0%
!! TATGGAAGACAATTTTCAAA+AGG + Chr5:24155312-24155331 MsG0580025788.01.T01:intron 25.0%
!! TTTTTGCTTATAATAGTGAC+CGG + Chr5:24154107-24154126 MsG0580025788.01.T01:intron 25.0%
!! TTTTTGCTTATAATAGTGAC+CGG - Chr5:24154126-24154107 None:intergenic 25.0%
!!! CTTTCCTTTTTTGAACAAAT+GGG - Chr5:24153410-24153429 None:intergenic 25.0%
!!! CTTTGCTGTTTATAACTTAA+GGG + Chr5:24155386-24155405 MsG0580025788.01.T01:intron 25.0%
!!! CTTTTGAAGAGAAACAAAAA+AGG + Chr5:24153927-24153946 MsG0580025788.01.T01:intron 25.0%
!!! GTAACTTTTATTGATTGTCT+TGG - Chr5:24152744-24152763 None:intergenic 25.0%
!!! TCTTTCCTTTTTTGAACAAA+TGG - Chr5:24153411-24153430 None:intergenic 25.0%
!!! TTTTTAATTGGTTTCCTTTG+TGG + Chr5:24155263-24155282 MsG0580025788.01.T01:intron 25.0%
AAAGTAAGACACCTCTTTAA+AGG - Chr5:24153019-24153038 None:intergenic 30.0%
AACACCCATTTGTTCAAAAA+AGG + Chr5:24153403-24153422 MsG0580025788.01.T01:intron 30.0%
AAGAAACACTTTCCATTGTT+TGG - Chr5:24153592-24153611 None:intergenic 30.0%
AAGAGAGAAGAATAAATGGT+GGG - Chr5:24153960-24153979 None:intergenic 30.0%
AATACTAAATCCCAATGTCA+TGG + Chr5:24154486-24154505 MsG0580025788.01.T01:intron 30.0%
ACAAGAATTCTAGCATGTTA+TGG - Chr5:24155096-24155115 None:intergenic 30.0%
ATAGACCACATACATCATTA+AGG + Chr5:24153213-24153232 MsG0580025788.01.T01:intron 30.0%
ATGCATGTAAAGATATTGCA+AGG - Chr5:24154621-24154640 None:intergenic 30.0%
ATTTCTCTCATACCAAACAA+AGG + Chr5:24154058-24154077 MsG0580025788.01.T01:intron 30.0%
ATTTGTGTGCTAAATGATAC+AGG + Chr5:24154159-24154178 MsG0580025788.01.T01:intron 30.0%
CAATGTTATAGCTTTCAATG+TGG - Chr5:24154587-24154606 None:intergenic 30.0%
CATGAATATTGCAAGAAAAG+AGG + Chr5:24154802-24154821 MsG0580025788.01.T01:intron 30.0%
CCTTAAGTTATAAACAGCAA+AGG - Chr5:24155388-24155407 None:intergenic 30.0%
CTCTCCGCAATAAATATTTA+AGG + Chr5:24152837-24152856 MsG0580025788.01.T01:intron 30.0%
GAAGAGAAACAAAAAAGGTA+TGG + Chr5:24153932-24153951 MsG0580025788.01.T01:intron 30.0%
GGATTCGAATGGATAAAAAA+CGG + Chr5:24152460-24152479 MsG0580025788.01.T01:intron 30.0%
GTGAAAGGAAAGATTGTATA+AGG + Chr5:24153274-24153293 MsG0580025788.01.T01:intron 30.0%
GTGTAAGGAAAAATAGTGAA+AGG + Chr5:24153259-24153278 MsG0580025788.01.T01:intron 30.0%
TAAATGATACAGGGTCTTAA+AGG + Chr5:24154169-24154188 MsG0580025788.01.T01:intron 30.0%
TAGACCACATACATCATTAA+GGG + Chr5:24153214-24153233 MsG0580025788.01.T01:intron 30.0%
TATAGAAAAAGAGTTGAACG+GGG - Chr5:24154408-24154427 None:intergenic 30.0%
TATCTATAATTGCTTGGTCA+AGG + Chr5:24154930-24154949 MsG0580025788.01.T01:intron 30.0%
TGAAGGGTCATTTGTATAAT+TGG - Chr5:24155136-24155155 None:intergenic 30.0%
TGAGAAGAGAGAAGAATAAA+TGG - Chr5:24153964-24153983 None:intergenic 30.0%
TGCAAAATTTGATCCCTTTA+TGG + Chr5:24155294-24155313 MsG0580025788.01.T01:intron 30.0%
TTCAAAAGTGAGAAGAAAGA+GGG - Chr5:24153915-24153934 None:intergenic 30.0%
TTGATGTTAATGTTGTTGTG+TGG + Chr5:24155532-24155551 MsG0580025788.01.T01:intron 30.0%
TTTGTGTGCTAAATGATACA+GGG + Chr5:24154160-24154179 MsG0580025788.01.T01:intron 30.0%
! AGAGAAACAAAAAAGGTATG+GGG + Chr5:24153934-24153953 MsG0580025788.01.T01:intron 30.0%
! AGCACATATCTGTATGTTTT+GGG + Chr5:24154707-24154726 MsG0580025788.01.T01:intron 30.0%
! CTTTTCTTGCAATATTCATG+TGG - Chr5:24154802-24154821 None:intergenic 30.0%
! GTATTTAAAGCAAGAAGTTC+AGG - Chr5:24154471-24154490 None:intergenic 30.0%
! GTTTGGAAACACTCTAAAAA+GGG - Chr5:24153575-24153594 None:intergenic 30.0%
! TCATTCATTTAGCCTTTGTT+TGG - Chr5:24154073-24154092 None:intergenic 30.0%
! TGTTTGGAAACACTCTAAAA+AGG - Chr5:24153576-24153595 None:intergenic 30.0%
! TTGTTTGGTTTAAGAGAAAG+TGG + Chr5:24153333-24153352 MsG0580025788.01.T01:intron 30.0%
! TTTAGAGTGTTTCCAAACAA+TGG + Chr5:24153577-24153596 MsG0580025788.01.T01:intron 30.0%
! TTTGGTTCAAAGGAAAGAAA+GGG - Chr5:24153637-24153656 None:intergenic 30.0%
!! AAAGTGGATTAGAAAGTTTG+AGG + Chr5:24153349-24153368 MsG0580025788.01.T01:intron 30.0%
!! CCTTTGCTGTTTATAACTTA+AGG + Chr5:24155385-24155404 MsG0580025788.01.T01:intron 30.0%
!!! AGAGGATTGTTTTAGTTGTT+TGG + Chr5:24153318-24153337 MsG0580025788.01.T01:intron 30.0%
!!! TGAGTCCAATTTTTTCCTTA+AGG + Chr5:24154739-24154758 MsG0580025788.01.T01:intron 30.0%
AATAGACATATCCAATCACC+CGG + Chr5:24152311-24152330 MsG0580025788.01.T01:CDS 35.0%
AGTTGGAGATTTCTCTAGTT+TGG - Chr5:24154000-24154019 None:intergenic 35.0%
ATAGAAAAAGAGTTGAACGG+GGG - Chr5:24154407-24154426 None:intergenic 35.0%
ATCATCTCCAGTTAGAAACA+TGG - Chr5:24155471-24155490 None:intergenic 35.0%
ATGGAAAGAAAGAATGTGGT+GGG - Chr5:24153552-24153571 None:intergenic 35.0%
ATGTGGAGTTCTTGAGTAAT+TGG - Chr5:24153044-24153063 None:intergenic 35.0%
CTCTGCCTTAAGGAAAAAAT+TGG - Chr5:24154747-24154766 None:intergenic 35.0%
CTTCAAAAGTGAGAAGAAAG+AGG - Chr5:24153916-24153935 None:intergenic 35.0%
GAAGAGAGAAGAATAAATGG+TGG - Chr5:24153961-24153980 None:intergenic 35.0%
GAAGTTGGAAAGAGAGAAAT+AGG + Chr5:24153688-24153707 MsG0580025788.01.T01:intron 35.0%
GAATATTGCAAGAAAAGAGG+AGG + Chr5:24154805-24154824 MsG0580025788.01.T01:intron 35.0%
GACAATTAAAAAGGAACGGA+GGG + Chr5:24152943-24152962 MsG0580025788.01.T01:intron 35.0%
GTAGCATAACATGTTAGAGT+TGG + Chr5:24155000-24155019 MsG0580025788.01.T01:intron 35.0%
GTTTGGTATGAGAGAAATAG+AGG - Chr5:24154056-24154075 None:intergenic 35.0%
TACATCATTAAGGGTCTGTT+TGG + Chr5:24153223-24153242 MsG0580025788.01.T01:intron 35.0%
TAGAAAAAGACCTTGAGATG+TGG - Chr5:24153061-24153080 None:intergenic 35.0%
TATGTCTATTTCGTCGATGT+CGG - Chr5:24152301-24152320 None:intergenic 35.0%
TCATTGATGAAAAATGGGAC+AGG - Chr5:24154275-24154294 None:intergenic 35.0%
TCCTTTCTGTTCTCTTTAGT+CGG + Chr5:24152433-24152452 MsG0580025788.01.T01:intron 35.0%
TGACAATTAAAAAGGAACGG+AGG + Chr5:24152942-24152961 MsG0580025788.01.T01:intron 35.0%
TTGAACCAAACATACCCTAA+GGG + Chr5:24153647-24153666 MsG0580025788.01.T01:intron 35.0%
TTTATAGCGCTTAAGCAAGA+AGG + Chr5:24154676-24154695 MsG0580025788.01.T01:intron 35.0%
TTTGAACCAAACATACCCTA+AGG + Chr5:24153646-24153665 MsG0580025788.01.T01:intron 35.0%
! AGCAACCAAAACCTTTAAAG+AGG + Chr5:24153005-24153024 MsG0580025788.01.T01:intron 35.0%
! ATACGGATATTATTGGTCTC+AGG - Chr5:24155037-24155056 None:intergenic 35.0%
! ATGTTATGCTACAAGTGTTG+CGG - Chr5:24154992-24155011 None:intergenic 35.0%
! CGATCTGATTTTCATGATTC+AGG + Chr5:24152492-24152511 MsG0580025788.01.T01:intron 35.0%
! CTATATTCCATGTAGCTTTG+TGG + Chr5:24154423-24154442 MsG0580025788.01.T01:intron 35.0%
! GAGCACATATCTGTATGTTT+TGG + Chr5:24154706-24154725 MsG0580025788.01.T01:intron 35.0%
! GGTTGCAAAAAGAAAGTGTA+AGG + Chr5:24153244-24153263 MsG0580025788.01.T01:intron 35.0%
! GTTTGGTTCAAAGGAAAGAA+AGG - Chr5:24153638-24153657 None:intergenic 35.0%
! TTAGGGTATGTTTGGTTCAA+AGG - Chr5:24153647-24153666 None:intergenic 35.0%
!! AAAGTTTTGTGGCTCAGATA+CGG - Chr5:24155054-24155073 None:intergenic 35.0%
!! AGACACCTCTTTAAAGGTTT+TGG - Chr5:24153013-24153032 None:intergenic 35.0%
!!! GTGCACATCCTGTTTTTAAT+TGG + Chr5:24155251-24155270 MsG0580025788.01.T01:intron 35.0%
!!! TGTGGAAGGATTTTTTGTGT+GGG + Chr5:24153525-24153544 MsG0580025788.01.T01:intron 35.0%
AACATACAGATATGTGCTCG+TGG - Chr5:24154705-24154724 None:intergenic 40.0%
ACCGACTAAAGAGAACAGAA+AGG - Chr5:24152437-24152456 None:intergenic 40.0%
ACCTATCTTCAGCAAACCAA+CGG + Chr5:24154202-24154221 MsG0580025788.01.T01:CDS 40.0%
AGAAAGGGATGAGGAAAGAA+AGG - Chr5:24153622-24153641 None:intergenic 40.0%
AGAAGTTCAGGCCAAAAATG+AGG - Chr5:24154459-24154478 None:intergenic 40.0%
AGGGATGGAAAGAAAGAATG+TGG - Chr5:24153556-24153575 None:intergenic 40.0%
ATAGCGTCGCAAAAAGATTC+AGG + Chr5:24152199-24152218 MsG0580025788.01.T01:CDS 40.0%
ATATCGCCATTTCCTACTAC+TGG - Chr5:24155355-24155374 None:intergenic 40.0%
ATCCCAATGTCATGGTATGA+TGG + Chr5:24154494-24154513 MsG0580025788.01.T01:intron 40.0%
ATTGCATACCTGAGTAGCAA+TGG - Chr5:24152624-24152643 None:intergenic 40.0%
CAAAACGTGCATAAAGGTTG+AGG - Chr5:24153504-24153523 None:intergenic 40.0%
CACCATCATACCATGACATT+GGG - Chr5:24154499-24154518 None:intergenic 40.0%
CAGACCCTTAATGATGTATG+TGG - Chr5:24153221-24153240 None:intergenic 40.0%
CTAAAGAGAACAGAAAGGAG+TGG - Chr5:24152432-24152451 None:intergenic 40.0%
CTGGAGATGATTATCAGTCT+TGG + Chr5:24155480-24155499 MsG0580025788.01.T01:intron 40.0%
CTGTTCTCTTTAGTCGGTAT+TGG + Chr5:24152439-24152458 MsG0580025788.01.T01:intron 40.0%
GAAGTTCAGGCCAAAAATGA+GGG - Chr5:24154458-24154477 None:intergenic 40.0%
GAGAGAAAGAGAAGAGAAGT+TGG - Chr5:24154017-24154036 None:intergenic 40.0%
GATGGAAAGAAAGAATGTGG+TGG - Chr5:24153553-24153572 None:intergenic 40.0%
GGCTCAGATACGGATATTAT+TGG - Chr5:24155044-24155063 None:intergenic 40.0%
GTATAAGGAAAGAAAGGGAG+TGG + Chr5:24153289-24153308 MsG0580025788.01.T01:intron 40.0%
GTTATAGCTTTCAATGTGGC+AGG - Chr5:24154583-24154602 None:intergenic 40.0%
GTTTATTCGACACCAGTAGT+AGG + Chr5:24155340-24155359 MsG0580025788.01.T01:intron 40.0%
TCAAAGGAAAGAAAGGGATG+AGG - Chr5:24153631-24153650 None:intergenic 40.0%
TCGAAATACCATTGCTACTC+AGG + Chr5:24152613-24152632 MsG0580025788.01.T01:CDS 40.0%
TGCTAAATTACTACACCCTC+CGG - Chr5:24154129-24154148 None:intergenic 40.0%
TGCTTATAATAGTGACCGGA+GGG + Chr5:24154111-24154130 MsG0580025788.01.T01:intron 40.0%
TGCTTATAATAGTGACCGGA+GGG - Chr5:24154130-24154111 None:intergenic 40.0%
TTGCAAGAAAAGAGGAGGAT+TGG + Chr5:24154810-24154829 MsG0580025788.01.T01:intron 40.0%
TTGCTTATAATAGTGACCGG+AGG + Chr5:24154110-24154129 MsG0580025788.01.T01:intron 40.0%
TTGCTTATAATAGTGACCGG+AGG - Chr5:24154129-24154110 None:intergenic 40.0%
! CTCAACCTTTATGCACGTTT+TGG + Chr5:24153502-24153521 MsG0580025788.01.T01:intron 40.0%
! GAATCTTTTTGCGACGCTAT+CGG - Chr5:24152199-24152218 None:intergenic 40.0%
! GGAAACACTCTAAAAAGGGA+TGG - Chr5:24153571-24153590 None:intergenic 40.0%
! TAGTCGGTATTGGATTCGAA+TGG + Chr5:24152449-24152468 MsG0580025788.01.T01:intron 40.0%
!!! CAATAATGGTAGGGGTGTTT+TGG + Chr5:24153453-24153472 MsG0580025788.01.T01:intron 40.0%
!!! GTGGAAGGATTTTTTGTGTG+GGG + Chr5:24153526-24153545 MsG0580025788.01.T01:intron 40.0%
!!! GTGTGGAAGGATTTTTTGTG+TGG + Chr5:24153524-24153543 MsG0580025788.01.T01:intron 40.0%
AACCAACGGGTACTTTAGAC+AGG + Chr5:24154216-24154235 MsG0580025788.01.T01:CDS 45.0%
ACACACCCTTAGGGTATGTT+TGG - Chr5:24153655-24153674 None:intergenic 45.0%
ATACCAGTAGATCCACTGCT+TGG - Chr5:24155231-24155250 None:intergenic 45.0%
ATAGCTTTCAATGTGGCAGG+AGG - Chr5:24154580-24154599 None:intergenic 45.0%
ATTGCTTGGTCAAGGAGAGA+AGG + Chr5:24154938-24154957 MsG0580025788.01.T01:intron 45.0%
CCAATGTCATGGTATGATGG+TGG + Chr5:24154497-24154516 MsG0580025788.01.T01:intron 45.0%
CCACACCAAAACGTGCATAA+AGG - Chr5:24153510-24153529 None:intergenic 45.0%
CCACCATCATACCATGACAT+TGG - Chr5:24154500-24154519 None:intergenic 45.0%
CCTATCTTCAGCAAACCAAC+GGG + Chr5:24154203-24154222 MsG0580025788.01.T01:CDS 45.0%
CTCAAGAACTCCACATCTCA+AGG + Chr5:24153048-24153067 MsG0580025788.01.T01:intron 45.0%
CTTAAGGCAGAGAGACTAGA+GGG + Chr5:24154755-24154774 MsG0580025788.01.T01:intron 45.0%
GGATGAGGAAAGAAAGGTTG+AGG - Chr5:24153616-24153635 None:intergenic 45.0%
TCAGGCCAAAAATGAGGGAT+TGG - Chr5:24154453-24154472 None:intergenic 45.0%
TCGACACCAGTAGTAGGAAA+TGG + Chr5:24155346-24155365 MsG0580025788.01.T01:intron 45.0%
TGGTTTCCTTTGTGGAGTTG+AGG + Chr5:24155271-24155290 MsG0580025788.01.T01:intron 45.0%
TTTGCACCTCAACTCCACAA+AGG - Chr5:24155280-24155299 None:intergenic 45.0%
! ACATACCCTAAGGGTGTGTT+TGG + Chr5:24153656-24153675 MsG0580025788.01.T01:intron 45.0%
! GACTGCCAATCCCTCATTTT+TGG + Chr5:24154445-24154464 MsG0580025788.01.T01:intron 45.0%
! TGCTCTGCCATGTTTCTAAC+TGG + Chr5:24155461-24155480 MsG0580025788.01.T01:intron 45.0%
! TTATGCTACAAGTGTTGCGG+TGG - Chr5:24154989-24155008 None:intergenic 45.0%
!! CCTTTATGCACGTTTTGGTG+TGG + Chr5:24153507-24153526 MsG0580025788.01.T01:intron 45.0%
!! GTTTGGTTCGGAAGAGAAGT+TGG + Chr5:24153673-24153692 MsG0580025788.01.T01:intron 45.0%
!! TATGCACGTTTTGGTGTGGA+AGG + Chr5:24153511-24153530 MsG0580025788.01.T01:intron 45.0%
!! AATGAAATATTAAATTAATA+AGG - Chr5:24152805-24152824 None:intergenic 5.0%
!! ATAAATAAAAAAAACAATAA+TGG + Chr5:24153439-24153458 MsG0580025788.01.T01:intron 5.0%
AGACATATCCAATCACCCGG+TGG + Chr5:24152314-24152333 MsG0580025788.01.T01:CDS 50.0%
AGAGCTGTTGTTCCAAGCAG+TGG + Chr5:24155216-24155235 MsG0580025788.01.T01:CDS 50.0%
AGCGCGAGATATCTCGTTGT+CGG - Chr5:24152163-24152182 None:intergenic 50.0%
ATGACGATGCAACGAACCAC+CGG - Chr5:24152333-24152352 None:intergenic 50.0%
CAAATGGATCTGCCAACTGC+AGG + Chr5:24155164-24155183 MsG0580025788.01.T01:intron 50.0%
CAACCATCACATACACCCTC+CGG + Chr5:24153125-24153144 MsG0580025788.01.T01:intron 50.0%
CCGAACCAAACACACCCTTA+GGG - Chr5:24153664-24153683 None:intergenic 50.0%
CCTCTAGTCTCTCTGCCTTA+AGG - Chr5:24154757-24154776 None:intergenic 50.0%
CCTTAAGGCAGAGAGACTAG+AGG + Chr5:24154754-24154773 MsG0580025788.01.T01:intron 50.0%
GAAAGGGAGTGGAAAGTGAG+AGG + Chr5:24153300-24153319 MsG0580025788.01.T01:intron 50.0%
GAGATATCTCGCGCTATCGT+TGG + Chr5:24152168-24152187 MsG0580025788.01.T01:CDS 50.0%
GGAGGAAGCTGTCGATAGTA+TGG - Chr5:24154968-24154987 None:intergenic 50.0%
GGCAGGAGGAGTGAAGAATT+TGG - Chr5:24154566-24154585 None:intergenic 50.0%
GTCTATTTCGTCGATGTCGG+CGG - Chr5:24152298-24152317 None:intergenic 50.0%
GTTCCAAGCAGTGGATCTAC+TGG + Chr5:24155225-24155244 MsG0580025788.01.T01:CDS 50.0%
TCCGAACCAAACACACCCTT+AGG - Chr5:24153665-24153684 None:intergenic 50.0%
TCTATTTCGTCGATGTCGGC+GGG - Chr5:24152297-24152316 None:intergenic 50.0%
TGGCAGTCCACAAAGCTACA+TGG - Chr5:24154433-24154452 None:intergenic 50.0%
! CCCTAAGGGTGTGTTTGGTT+CGG + Chr5:24153661-24153680 MsG0580025788.01.T01:intron 50.0%
! GACCTGTCTAAAGTACCCGT+TGG - Chr5:24154221-24154240 None:intergenic 50.0%
!! AAGGAGGTATCTCCTCGTTG+GGG - Chr5:24152233-24152252 None:intergenic 50.0%
!! AGAAGGAGGTATCTCCTCGT+TGG - Chr5:24152235-24152254 None:intergenic 50.0%
!! CCCGTTGGTTTGCTGAAGAT+AGG - Chr5:24154206-24154225 None:intergenic 50.0%
!! GAAGGAGGTATCTCCTCGTT+GGG - Chr5:24152234-24152253 None:intergenic 50.0%
AGGTATCTCCTCGTTGGGGT+TGG - Chr5:24152229-24152248 None:intergenic 55.0%
AGTGAGGGTAAGAGGGAGAG+AGG - Chr5:24152274-24152293 None:intergenic 55.0%
GAGACTAGAGGGAGAGAGAG+AGG + Chr5:24154766-24154785 MsG0580025788.01.T01:intron 55.0%
GCAGGAAGTAGAGCAGCATC+AGG + Chr5:24155182-24155201 MsG0580025788.01.T01:intron 55.0%
GCTGCTCTACTTCCTGCAGT+TGG - Chr5:24155179-24155198 None:intergenic 55.0%
GGTAAGAGGGAGAGAGGAGA+CGG - Chr5:24152268-24152287 None:intergenic 55.0%
GGTATCTCCTCGTTGGGGTT+GGG - Chr5:24152228-24152247 None:intergenic 55.0%
TATCCCGTTCTCGCCGTTGT+CGG - Chr5:24152121-24152140 None:intergenic 55.0%
TGACGATGCAACGAACCACC+GGG - Chr5:24152332-24152351 None:intergenic 55.0%
TGTCGGCGCGAGCGATTAAA+CGG - Chr5:24152146-24152165 None:intergenic 55.0%
! TGACCGGAGGGTGTATGTGA+TGG - Chr5:24153131-24153150 None:intergenic 55.0%
! TGCTACAAGTGTTGCGGTGG+AGG - Chr5:24154986-24155005 None:intergenic 55.0%
AAGAGGGAGAGAGGAGACGG+CGG - Chr5:24152265-24152284 None:intergenic 60.0%
ATGGCCGACAACGGCGAGAA+CGG + Chr5:24152114-24152133 MsG0580025788.01.T01:CDS 60.0%
GCAACGAACCACCGGGTGAT+TGG - Chr5:24152325-24152344 None:intergenic 60.0%
GTCGGCGCGAGCGATTAAAC+GGG - Chr5:24152145-24152164 None:intergenic 60.0%
AGAGAGGAGACGGCGGGAAC+GGG - Chr5:24152258-24152277 None:intergenic 65.0%
AGAGGGAGAGAGGAGACGGC+GGG - Chr5:24152264-24152283 None:intergenic 65.0%
CAGGAAGCCCAACCCCAACG+AGG + Chr5:24152218-24152237 MsG0580025788.01.T01:CDS 65.0%
CGGCGGGAGTGAGGGTAAGA+GGG - Chr5:24152281-24152300 None:intergenic 65.0%
GAGAGAGGAGACGGCGGGAA+CGG - Chr5:24152259-24152278 None:intergenic 65.0%
GTCGATGTCGGCGGGAGTGA+GGG - Chr5:24152289-24152308 None:intergenic 65.0%
TCGGCGGGAGTGAGGGTAAG+AGG - Chr5:24152282-24152301 None:intergenic 65.0%
TGGCCGACAACGGCGAGAAC+GGG + Chr5:24152115-24152134 MsG0580025788.01.T01:CDS 65.0%
ACGGCGGGAACGGGAGAAGG+AGG - Chr5:24152249-24152268 None:intergenic 70.0%
CGTCGATGTCGGCGGGAGTG+AGG - Chr5:24152290-24152309 None:intergenic 70.0%
GAGACGGCGGGAACGGGAGA+AGG - Chr5:24152252-24152271 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr5 gene 24152114 24155582 24152114 ID=MsG0580025788.01;Name=MsG0580025788.01
Chr5 mRNA 24152114 24155582 24152114 ID=MsG0580025788.01.T01;Parent=MsG0580025788.01;Name=MsG0580025788.01.T01;_AED=0.50;_eAED=0.54;_QI=0|0.25|0.6|1|1|1|5|0|133
Chr5 exon 24152114 24152335 24152114 ID=MsG0580025788.01.T01:exon:4720;Parent=MsG0580025788.01.T01
Chr5 exon 24152596 24152634 24152596 ID=MsG0580025788.01.T01:exon:4721;Parent=MsG0580025788.01.T01
Chr5 exon 24154181 24154237 24154181 ID=MsG0580025788.01.T01:exon:4722;Parent=MsG0580025788.01.T01
Chr5 exon 24155186 24155246 24155186 ID=MsG0580025788.01.T01:exon:4723;Parent=MsG0580025788.01.T01
Chr5 exon 24155560 24155582 24155560 ID=MsG0580025788.01.T01:exon:4724;Parent=MsG0580025788.01.T01
Chr5 CDS 24152114 24152335 24152114 ID=MsG0580025788.01.T01:cds;Parent=MsG0580025788.01.T01
Chr5 CDS 24152596 24152634 24152596 ID=MsG0580025788.01.T01:cds;Parent=MsG0580025788.01.T01
Chr5 CDS 24154181 24154237 24154181 ID=MsG0580025788.01.T01:cds;Parent=MsG0580025788.01.T01
Chr5 CDS 24155186 24155246 24155186 ID=MsG0580025788.01.T01:cds;Parent=MsG0580025788.01.T01
Chr5 CDS 24155560 24155582 24155560 ID=MsG0580025788.01.T01:cds;Parent=MsG0580025788.01.T01
Gene Sequence

>MsG0580025788.01.T01

ATGGCCGACAACGGCGAGAACGGGATATCCCGTTTAATCGCTCGCGCCGACAACGAGATATCTCGCGCTATCGTTGGTATCGCCGATAGCGTCGCAAAAAGATTCAGGAAGCCCAACCCCAACGAGGAGATACCTCCTTCTCCCGTTCCCGCCGTCTCCTCTCTCCCTCTTACCCTCACTCCCGCCGACATCGACGAAATAGACATATCCAATCACCCGGTGGATTTTGGCAAAGCATTTCGAAATACCATTGCTACTCAGGGTCTTAAAGGCATGAGAGAAACCTATCTTCAGCAAACCAACGGGTACTTTAGACAGGAAGTAGAGCAGCATCAGGAAGACACATCTAGAGCTGTTGTTCCAAGCAGTGGATCTACTGCTTTCACTATACAATATGCATAA

Protein sequence

>MsG0580025788.01.T01

MADNGENGISRLIARADNEISRAIVGIADSVAKRFRKPNPNEEIPPSPVPAVSSLPLTLTPADIDEIDISNHPVDFGKAFRNTIATQGLKGMRETYLQQTNGYFRQEVEQHQEDTSRAVVPSSGSTAFTIQYA*