AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005773.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005773.01.T01 MTR_1g106765 97.486 358 9 0 1 358 1 358 0.0 717
MsG0180005773.01.T01 MTR_1g009690 33.645 428 198 18 6 358 4 420 1.59e-46 164
MsG0180005773.01.T01 MTR_1g009710 33.724 427 193 18 6 355 4 417 9.31e-45 159
MsG0180005773.01.T01 MTR_4g095490 38.049 205 114 5 156 358 262 455 1.03e-27 113
MsG0180005773.01.T01 MTR_4g095490 41.489 94 52 2 8 100 7 98 2.58e-14 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005773.01.T01 AT4G33890 43.767 361 172 10 6 358 5 342 3.10e-85 262
MsG0180005773.01.T01 AT4G33890 43.767 361 172 10 6 358 5 342 3.10e-85 262
MsG0180005773.01.T01 AT2G14850 41.808 354 138 8 6 358 5 291 3.23e-80 247
MsG0180005773.01.T01 AT4G31440 34.109 387 188 15 10 353 8 370 8.14e-46 160
MsG0180005773.01.T01 AT5G67410 32.033 359 165 10 1 354 1 285 4.56e-42 148
MsG0180005773.01.T01 AT5G67410 32.033 359 165 10 1 354 1 285 4.56e-42 148
MsG0180005773.01.T01 AT2G24530 32.258 403 211 15 10 358 8 402 4.82e-39 143
MsG0180005773.01.T01 AT2G24530 32.258 403 211 15 10 358 8 402 4.82e-39 143

Find 98 sgRNAs with CRISPR-Local

Find 103 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTTTAGATCCAAGGTTTC+GGG 0.184229 1:-96001644 None:intergenic
CCTGCGCAGGGGTGGTTCTT+TGG 0.220322 1:+96001564 MsG0180005773.01.T01:CDS
TGCTGTTTGCATATACATTC+TGG 0.230602 1:-96002142 None:intergenic
TCTCCATCTTCAACAGAAAT+AGG 0.282741 1:-96001730 None:intergenic
GAATTAAATCCACAAGTTCT+TGG 0.301140 1:+96002210 MsG0180005773.01.T01:CDS
TCAAGCTGTGTGGGCCAATC+TGG 0.313228 1:-96002234 None:intergenic
TCTTCATAATCAACTCATTA+GGG 0.313745 1:+96001399 MsG0180005773.01.T01:CDS
CGGAGTGCTTTGGGACAGTT+AGG 0.314718 1:+96001616 MsG0180005773.01.T01:CDS
TACTTTGAATGCTTGAGCTT+GGG 0.342324 1:-96001777 None:intergenic
TACGGGTCGTCGGAGTGCTT+TGG 0.346552 1:+96001606 MsG0180005773.01.T01:CDS
ATCTTCTTGCGCATCTCTCT+TGG 0.347790 1:+96002170 MsG0180005773.01.T01:CDS
ACGGGTCGTCGGAGTGCTTT+GGG 0.349062 1:+96001607 MsG0180005773.01.T01:CDS
TCCTCTACGGGTTTATCATC+TGG 0.353714 1:+96002048 MsG0180005773.01.T01:CDS
CTCTTCATAATCAACTCATT+AGG 0.354368 1:+96001398 MsG0180005773.01.T01:CDS
AATCTTTAGATCCAAGGTTT+CGG 0.356774 1:-96001645 None:intergenic
TCTGTTGCACTCTGCTGCTC+TGG 0.359317 1:-96001682 None:intergenic
CCTTTCCTCCTTCCCTGCGC+AGG 0.360688 1:+96001551 MsG0180005773.01.T01:CDS
AGTCCTGTTGCAGCCCCTCT+TGG 0.364308 1:+96001802 MsG0180005773.01.T01:CDS
ACTGTCCATTTCCTTGTCTT+CGG 0.375162 1:-96002092 None:intergenic
TTATCATCTGGTTTAAGATT+CGG 0.388055 1:+96002060 MsG0180005773.01.T01:CDS
ATCATCTTTGAGGAGTCGTT+TGG 0.388549 1:+96001930 MsG0180005773.01.T01:CDS
CTTTCCTCCTTCCCTGCGCA+GGG 0.395040 1:+96001552 MsG0180005773.01.T01:CDS
ATCCCAAGAGGGGCTGCAAC+AGG 0.401354 1:-96001805 None:intergenic
GCTGTTTGCATATACATTCT+GGG 0.415038 1:-96002141 None:intergenic
CTTTGATCAGCTTGGGAAGT+TGG 0.420393 1:+96001306 MsG0180005773.01.T01:CDS
TTACTTTGAATGCTTGAGCT+TGG 0.422875 1:-96001778 None:intergenic
CCTCCTATTTCTGTTGAAGA+TGG 0.424695 1:+96001727 MsG0180005773.01.T01:CDS
ACTTGTGAAGGGATGCTTAC+GGG 0.424873 1:+96001589 MsG0180005773.01.T01:CDS
GAGATATCCATTGCTGAAAC+AGG 0.424894 1:-96001899 None:intergenic
ACGTCCATAACCAGAGTTCA+TGG 0.428298 1:-96001830 None:intergenic
ATATCCATGAACTCTGGTTA+TGG 0.429292 1:+96001826 MsG0180005773.01.T01:CDS
GGTTCTTTGGCTACTTGTGA+AGG 0.430531 1:+96001577 MsG0180005773.01.T01:CDS
GTCCTGTTGCAGCCCCTCTT+GGG 0.433856 1:+96001803 MsG0180005773.01.T01:CDS
GAAAGCTGTTATTGTAAAGA+AGG 0.435298 1:+96001258 MsG0180005773.01.T01:CDS
AAGATTTGCATCACGACGAT+TGG 0.436849 1:+96001361 MsG0180005773.01.T01:CDS
CACAAGTTCTTGGACCAGAT+TGG 0.441697 1:+96002220 MsG0180005773.01.T01:CDS
CTCCTCAAAGATGATGTGTC+AGG 0.443797 1:-96001922 None:intergenic
GCTGTTATTGTAAAGAAGGT+TGG 0.449917 1:+96001262 MsG0180005773.01.T01:CDS
CCAAAGAACCACCCCTGCGC+AGG 0.452604 1:-96001564 None:intergenic
CCTCCTTCCCTGCGCAGGGG+TGG 0.457550 1:+96001556 MsG0180005773.01.T01:CDS
TCCCTGACACATCATCTTTG+AGG 0.457686 1:+96001920 MsG0180005773.01.T01:CDS
GTACGTACTTTGATCAGCTT+GGG 0.458271 1:+96001299 MsG0180005773.01.T01:CDS
GGTACGTACTTTGATCAGCT+TGG 0.478644 1:+96001298 MsG0180005773.01.T01:CDS
AAATAGGAGGTCTGCTGCCA+AGG 0.481417 1:-96001714 None:intergenic
GAGGTTGGTTGAATCCTCTA+CGG 0.483248 1:+96002035 MsG0180005773.01.T01:CDS
GAACCACCCCTGCGCAGGGA+AGG 0.484271 1:-96001559 None:intergenic
GAGCACCGAAGACAAGGAAA+TGG 0.489060 1:+96002087 MsG0180005773.01.T01:CDS
AGATTTGCATCACGACGATT+GGG 0.489555 1:+96001362 MsG0180005773.01.T01:CDS
TGAATGCAAAAGATTCAAAT+CGG 0.493157 1:+96001491 MsG0180005773.01.T01:CDS
GATCAATTCAAATGCAGTAC+GGG 0.494773 1:+96001524 MsG0180005773.01.T01:CDS
GAGCAAAAGTTGAAGAAGGA+GGG 0.501177 1:+96001952 MsG0180005773.01.T01:CDS
CCACCCCTGCGCAGGGAAGG+AGG 0.507160 1:-96001556 None:intergenic
GTTCTTTGGCTACTTGTGAA+GGG 0.512894 1:+96001578 MsG0180005773.01.T01:CDS
TTAGGGAAGCCCCGAAACCT+TGG 0.514470 1:+96001634 MsG0180005773.01.T01:CDS
CAAAGAACCACCCCTGCGCA+GGG 0.521532 1:-96001563 None:intergenic
TACTTGTGAAGGGATGCTTA+CGG 0.521551 1:+96001588 MsG0180005773.01.T01:CDS
AGATCAAATCTTTAGATCCA+AGG 0.521702 1:-96001651 None:intergenic
GGAGCAAAAGTTGAAGAAGG+AGG 0.524739 1:+96001951 MsG0180005773.01.T01:CDS
CCTGCGCAGGGAAGGAGGAA+AGG 0.528342 1:-96001551 None:intergenic
CTATACTCGAATAAACACTT+TGG 0.530280 1:+96001231 MsG0180005773.01.T01:CDS
CAAATCTTCTCAAGCTGTGT+GGG 0.532500 1:-96002243 None:intergenic
CATGATGATGCAAAAGAAAG+AGG 0.534396 1:-96001856 None:intergenic
AGGTTGGTTGAATCCTCTAC+GGG 0.534507 1:+96002036 MsG0180005773.01.T01:CDS
GGATTCTTATCTGAGGAGGT+TGG 0.538544 1:+96002020 MsG0180005773.01.T01:CDS
TTTGGAGCAAAAGTTGAAGA+AGG 0.544038 1:+96001948 MsG0180005773.01.T01:CDS
AGATCAATTCAAATGCAGTA+CGG 0.546197 1:+96001523 MsG0180005773.01.T01:CDS
TTTGCAGAACTTCTATGAGG+TGG 0.546643 1:-96001454 None:intergenic
CGAGAAACCTGTTTCAGCAA+TGG 0.547921 1:+96001892 MsG0180005773.01.T01:CDS
GGAGAAGAGGTTGAACAGCT+TGG 0.548058 1:+96001748 MsG0180005773.01.T01:CDS
TTCTGTTGAAGATGGAGAAG+AGG 0.551162 1:+96001735 MsG0180005773.01.T01:CDS
GAAGAGGTTGAACAGCTTGG+TGG 0.570051 1:+96001751 MsG0180005773.01.T01:CDS
AAGGTTGGTAATGAGAAAGC+TGG 0.570371 1:+96001277 MsG0180005773.01.T01:CDS
GGAAATGAGCACCGAAGACA+AGG 0.573628 1:+96002081 MsG0180005773.01.T01:CDS
GCAACAGAACTGAATTCCCT+TGG 0.575279 1:+96001697 MsG0180005773.01.T01:CDS
CTTGGGATATCCATGAACTC+TGG 0.577590 1:+96001820 MsG0180005773.01.T01:CDS
AAGGGATGCTTACGGGTCGT+CGG 0.583401 1:+96001596 MsG0180005773.01.T01:CDS
AAATCTATTGAATAATGCAA+TGG 0.585677 1:+96001999 MsG0180005773.01.T01:CDS
CAATGGATTCTTATCTGAGG+AGG 0.586354 1:+96002016 MsG0180005773.01.T01:CDS
CAATCTGGTCCAAGAACTTG+TGG 0.587282 1:-96002219 None:intergenic
GGAGTGCTTTGGGACAGTTA+GGG 0.587349 1:+96001617 MsG0180005773.01.T01:CDS
AATAGGAGGTCTGCTGCCAA+GGG 0.591370 1:-96001713 None:intergenic
TCCTCAAAGATGATGTGTCA+GGG 0.591816 1:-96001921 None:intergenic
CTAATGAGTTGATTATGAAG+AGG 0.601588 1:-96001397 None:intergenic
GGAGGGTTTAACCGTGACAG+TGG 0.613409 1:+96001969 MsG0180005773.01.T01:CDS
TTGCATCACGACGATTGGGA+AGG 0.614716 1:+96001366 MsG0180005773.01.T01:CDS
ATTTACACAATCCACTGTCA+CGG 0.617053 1:-96001980 None:intergenic
TTTCCTCCTTCCCTGCGCAG+GGG 0.617506 1:+96001553 MsG0180005773.01.T01:CDS
ACAAATCTTCTCAAGCTGTG+TGG 0.623174 1:-96002244 None:intergenic
CCATCTTCAACAGAAATAGG+AGG 0.624160 1:-96001727 None:intergenic
TTGCTGAAACAGGTTTCTCG+AGG 0.634655 1:-96001889 None:intergenic
TCTTTAGATCCAAGGTTTCG+GGG 0.636693 1:-96001643 None:intergenic
AGTTCATGGATATCCCAAGA+GGG 0.641024 1:-96001816 None:intergenic
ACCAGATGATAAACCCGTAG+AGG 0.642255 1:-96002049 None:intergenic
ATGCAATGGATTCTTATCTG+AGG 0.661587 1:+96002013 MsG0180005773.01.T01:CDS
ATCAATTCAAATGCAGTACG+GGG 0.669889 1:+96001525 MsG0180005773.01.T01:CDS
GGTTAGTTCAAAGATCAGCA+AGG 0.679940 1:+96001327 MsG0180005773.01.T01:CDS
GTTCATGGATATCCCAAGAG+GGG 0.692618 1:-96001815 None:intergenic
GAGTTCATGGATATCCCAAG+AGG 0.695777 1:-96001817 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATCTATTGAATAATGCAA+TGG + Chr1:96001999-96002018 MsG0180005773.01.T01:CDS 20.0%
! TCTTCATAATCAACTCATTA+GGG + Chr1:96001399-96001418 MsG0180005773.01.T01:CDS 25.0%
! TGAATGCAAAAGATTCAAAT+CGG + Chr1:96001491-96001510 MsG0180005773.01.T01:CDS 25.0%
!! TTATCATCTGGTTTAAGATT+CGG + Chr1:96002060-96002079 MsG0180005773.01.T01:CDS 25.0%
AAGTTCTGCAAAAAAAGAGA+GGG + Chr1:96001465-96001484 MsG0180005773.01.T01:CDS 30.0%
AATCTTTAGATCCAAGGTTT+CGG - Chr1:96001648-96001667 None:intergenic 30.0%
AGATCAAATCTTTAGATCCA+AGG - Chr1:96001654-96001673 None:intergenic 30.0%
AGATCAATTCAAATGCAGTA+CGG + Chr1:96001523-96001542 MsG0180005773.01.T01:CDS 30.0%
CTATACTCGAATAAACACTT+TGG + Chr1:96001231-96001250 MsG0180005773.01.T01:CDS 30.0%
CTCTTCATAATCAACTCATT+AGG + Chr1:96001398-96001417 MsG0180005773.01.T01:CDS 30.0%
GAAAGCTGTTATTGTAAAGA+AGG + Chr1:96001258-96001277 MsG0180005773.01.T01:CDS 30.0%
GAATTAAATCCACAAGTTCT+TGG + Chr1:96002210-96002229 MsG0180005773.01.T01:CDS 30.0%
!! ATTCGAGTATAGTTTTGCTT+TGG - Chr1:96001223-96001242 None:intergenic 30.0%
!! CTAATGAGTTGATTATGAAG+AGG - Chr1:96001400-96001419 None:intergenic 30.0%
!!! TTTTTTGCAGAACTTCTATG+AGG - Chr1:96001460-96001479 None:intergenic 30.0%
ATATCCATGAACTCTGGTTA+TGG + Chr1:96001826-96001845 MsG0180005773.01.T01:CDS 35.0%
ATCAATTCAAATGCAGTACG+GGG + Chr1:96001525-96001544 MsG0180005773.01.T01:CDS 35.0%
ATCTTTAGATCCAAGGTTTC+GGG - Chr1:96001647-96001666 None:intergenic 35.0%
ATTTACACAATCCACTGTCA+CGG - Chr1:96001983-96002002 None:intergenic 35.0%
GAAGTTCTGCAAAAAAAGAG+AGG + Chr1:96001464-96001483 MsG0180005773.01.T01:CDS 35.0%
GATCAATTCAAATGCAGTAC+GGG + Chr1:96001524-96001543 MsG0180005773.01.T01:CDS 35.0%
GCTGTTATTGTAAAGAAGGT+TGG + Chr1:96001262-96001281 MsG0180005773.01.T01:CDS 35.0%
GCTGTTTGCATATACATTCT+GGG - Chr1:96002144-96002163 None:intergenic 35.0%
TACTTTGAATGCTTGAGCTT+GGG - Chr1:96001780-96001799 None:intergenic 35.0%
TCTCCATCTTCAACAGAAAT+AGG - Chr1:96001733-96001752 None:intergenic 35.0%
TTACTTTGAATGCTTGAGCT+TGG - Chr1:96001781-96001800 None:intergenic 35.0%
! ATGCAATGGATTCTTATCTG+AGG + Chr1:96002013-96002032 MsG0180005773.01.T01:CDS 35.0%
! CATGATGATGCAAAAGAAAG+AGG - Chr1:96001859-96001878 None:intergenic 35.0%
! TGCTGTTTGCATATACATTC+TGG - Chr1:96002145-96002164 None:intergenic 35.0%
! TTTGGAGCAAAAGTTGAAGA+AGG + Chr1:96001948-96001967 MsG0180005773.01.T01:CDS 35.0%
AAGATTTGCATCACGACGAT+TGG + Chr1:96001361-96001380 MsG0180005773.01.T01:CDS 40.0%
ACAAATCTTCTCAAGCTGTG+TGG - Chr1:96002247-96002266 None:intergenic 40.0%
ACTGTCCATTTCCTTGTCTT+CGG - Chr1:96002095-96002114 None:intergenic 40.0%
AGATTTGCATCACGACGATT+GGG + Chr1:96001362-96001381 MsG0180005773.01.T01:CDS 40.0%
AGTTCATGGATATCCCAAGA+GGG - Chr1:96001819-96001838 None:intergenic 40.0%
CAAATCTTCTCAAGCTGTGT+GGG - Chr1:96002246-96002265 None:intergenic 40.0%
CCATCTTCAACAGAAATAGG+AGG - Chr1:96001730-96001749 None:intergenic 40.0%
GAGATATCCATTGCTGAAAC+AGG - Chr1:96001902-96001921 None:intergenic 40.0%
GAGCAAAAGTTGAAGAAGGA+GGG + Chr1:96001952-96001971 MsG0180005773.01.T01:CDS 40.0%
GTACGTACTTTGATCAGCTT+GGG + Chr1:96001299-96001318 MsG0180005773.01.T01:CDS 40.0%
GTTCTTTGGCTACTTGTGAA+GGG + Chr1:96001578-96001597 MsG0180005773.01.T01:CDS 40.0%
TACTTGTGAAGGGATGCTTA+CGG + Chr1:96001588-96001607 MsG0180005773.01.T01:CDS 40.0%
TCCTCAAAGATGATGTGTCA+GGG - Chr1:96001924-96001943 None:intergenic 40.0%
TCTTTAGATCCAAGGTTTCG+GGG - Chr1:96001646-96001665 None:intergenic 40.0%
TTCTGTTGAAGATGGAGAAG+AGG + Chr1:96001735-96001754 MsG0180005773.01.T01:CDS 40.0%
TTTGCAGAACTTCTATGAGG+TGG - Chr1:96001457-96001476 None:intergenic 40.0%
! ATCATCTTTGAGGAGTCGTT+TGG + Chr1:96001930-96001949 MsG0180005773.01.T01:CDS 40.0%
! CAATGGATTCTTATCTGAGG+AGG + Chr1:96002016-96002035 MsG0180005773.01.T01:CDS 40.0%
! GGTTAGTTCAAAGATCAGCA+AGG + Chr1:96001327-96001346 MsG0180005773.01.T01:CDS 40.0%
!! AAGGTTGGTAATGAGAAAGC+TGG + Chr1:96001277-96001296 MsG0180005773.01.T01:CDS 40.0%
!! CCTCCTATTTCTGTTGAAGA+TGG + Chr1:96001727-96001746 MsG0180005773.01.T01:CDS 40.0%
ACCAGATGATAAACCCGTAG+AGG - Chr1:96002052-96002071 None:intergenic 45.0%
ACGTCCATAACCAGAGTTCA+TGG - Chr1:96001833-96001852 None:intergenic 45.0%
ACTTGTGAAGGGATGCTTAC+GGG + Chr1:96001589-96001608 MsG0180005773.01.T01:CDS 45.0%
ATCTTCTTGCGCATCTCTCT+TGG + Chr1:96002170-96002189 MsG0180005773.01.T01:CDS 45.0%
CAATCTGGTCCAAGAACTTG+TGG - Chr1:96002222-96002241 None:intergenic 45.0%
CACAAGTTCTTGGACCAGAT+TGG + Chr1:96002220-96002239 MsG0180005773.01.T01:CDS 45.0%
CGAGAAACCTGTTTCAGCAA+TGG + Chr1:96001892-96001911 MsG0180005773.01.T01:CDS 45.0%
CTCCTCAAAGATGATGTGTC+AGG - Chr1:96001925-96001944 None:intergenic 45.0%
CTTGGGATATCCATGAACTC+TGG + Chr1:96001820-96001839 MsG0180005773.01.T01:CDS 45.0%
CTTTGATCAGCTTGGGAAGT+TGG + Chr1:96001306-96001325 MsG0180005773.01.T01:CDS 45.0%
GAGTTCATGGATATCCCAAG+AGG - Chr1:96001820-96001839 None:intergenic 45.0%
GCAACAGAACTGAATTCCCT+TGG + Chr1:96001697-96001716 MsG0180005773.01.T01:CDS 45.0%
GGAGCAAAAGTTGAAGAAGG+AGG + Chr1:96001951-96001970 MsG0180005773.01.T01:CDS 45.0%
GGATTCTTATCTGAGGAGGT+TGG + Chr1:96002020-96002039 MsG0180005773.01.T01:CDS 45.0%
GGTACGTACTTTGATCAGCT+TGG + Chr1:96001298-96001317 MsG0180005773.01.T01:CDS 45.0%
GGTTCTTTGGCTACTTGTGA+AGG + Chr1:96001577-96001596 MsG0180005773.01.T01:CDS 45.0%
GTTCATGGATATCCCAAGAG+GGG - Chr1:96001818-96001837 None:intergenic 45.0%
TCCCTGACACATCATCTTTG+AGG + Chr1:96001920-96001939 MsG0180005773.01.T01:CDS 45.0%
TCCTCTACGGGTTTATCATC+TGG + Chr1:96002048-96002067 MsG0180005773.01.T01:CDS 45.0%
TTGCTGAAACAGGTTTCTCG+AGG - Chr1:96001892-96001911 None:intergenic 45.0%
! AGGTTGGTTGAATCCTCTAC+GGG + Chr1:96002036-96002055 MsG0180005773.01.T01:CDS 45.0%
! CTTGGATTTTCGCGTTGCAA+TGG + Chr1:96002188-96002207 MsG0180005773.01.T01:CDS 45.0%
! GAGGTTGGTTGAATCCTCTA+CGG + Chr1:96002035-96002054 MsG0180005773.01.T01:CDS 45.0%
AAATAGGAGGTCTGCTGCCA+AGG - Chr1:96001717-96001736 None:intergenic 50.0%
AATAGGAGGTCTGCTGCCAA+GGG - Chr1:96001716-96001735 None:intergenic 50.0%
GAAGAGGTTGAACAGCTTGG+TGG + Chr1:96001751-96001770 MsG0180005773.01.T01:CDS 50.0%
GGAGAAGAGGTTGAACAGCT+TGG + Chr1:96001748-96001767 MsG0180005773.01.T01:CDS 50.0%
TTGCATCACGACGATTGGGA+AGG + Chr1:96001366-96001385 MsG0180005773.01.T01:CDS 50.0%
!! GAGCACCGAAGACAAGGAAA+TGG + Chr1:96002087-96002106 MsG0180005773.01.T01:CDS 50.0%
!! GGAAATGAGCACCGAAGACA+AGG + Chr1:96002081-96002100 MsG0180005773.01.T01:CDS 50.0%
!! GGAGTGCTTTGGGACAGTTA+GGG + Chr1:96001617-96001636 MsG0180005773.01.T01:CDS 50.0%
AAGGGATGCTTACGGGTCGT+CGG + Chr1:96001596-96001615 MsG0180005773.01.T01:CDS 55.0%
GGAGGGTTTAACCGTGACAG+TGG + Chr1:96001969-96001988 MsG0180005773.01.T01:CDS 55.0%
TCAAGCTGTGTGGGCCAATC+TGG - Chr1:96002237-96002256 None:intergenic 55.0%
TCTGTTGCACTCTGCTGCTC+TGG - Chr1:96001685-96001704 None:intergenic 55.0%
TTAGGGAAGCCCCGAAACCT+TGG + Chr1:96001634-96001653 MsG0180005773.01.T01:CDS 55.0%
!! CGGAGTGCTTTGGGACAGTT+AGG + Chr1:96001616-96001635 MsG0180005773.01.T01:CDS 55.0%
AGTCCTGTTGCAGCCCCTCT+TGG + Chr1:96001802-96001821 MsG0180005773.01.T01:CDS 60.0%
ATCCCAAGAGGGGCTGCAAC+AGG - Chr1:96001808-96001827 None:intergenic 60.0%
CAAAGAACCACCCCTGCGCA+GGG - Chr1:96001566-96001585 None:intergenic 60.0%
CTTTCCTCCTTCCCTGCGCA+GGG + Chr1:96001552-96001571 MsG0180005773.01.T01:CDS 60.0%
GTCCTGTTGCAGCCCCTCTT+GGG + Chr1:96001803-96001822 MsG0180005773.01.T01:CDS 60.0%
TTTCCTCCTTCCCTGCGCAG+GGG + Chr1:96001553-96001572 MsG0180005773.01.T01:CDS 60.0%
! ACGGGTCGTCGGAGTGCTTT+GGG + Chr1:96001607-96001626 MsG0180005773.01.T01:CDS 60.0%
! TACGGGTCGTCGGAGTGCTT+TGG + Chr1:96001606-96001625 MsG0180005773.01.T01:CDS 60.0%
CCAAAGAACCACCCCTGCGC+AGG - Chr1:96001567-96001586 None:intergenic 65.0%
CCTGCGCAGGGAAGGAGGAA+AGG - Chr1:96001554-96001573 None:intergenic 65.0%
CCTGCGCAGGGGTGGTTCTT+TGG + Chr1:96001564-96001583 MsG0180005773.01.T01:CDS 65.0%
CCTTTCCTCCTTCCCTGCGC+AGG + Chr1:96001551-96001570 MsG0180005773.01.T01:CDS 65.0%
GAACCACCCCTGCGCAGGGA+AGG - Chr1:96001562-96001581 None:intergenic 70.0%
CCACCCCTGCGCAGGGAAGG+AGG - Chr1:96001559-96001578 None:intergenic 75.0%
CCTCCTTCCCTGCGCAGGGG+TGG + Chr1:96001556-96001575 MsG0180005773.01.T01:CDS 75.0%
Chromosome Type Strat End Strand Name
Chr1 gene 96001211 96002287 96001211 ID=MsG0180005773.01;Name=MsG0180005773.01
Chr1 mRNA 96001211 96002287 96001211 ID=MsG0180005773.01.T01;Parent=MsG0180005773.01;Name=MsG0180005773.01.T01;_AED=0.49;_eAED=0.49;_QI=0|-1|0|1|-1|1|1|0|358
Chr1 exon 96001211 96002287 96001211 ID=MsG0180005773.01.T01:exon:16128;Parent=MsG0180005773.01.T01
Chr1 CDS 96001211 96002287 96001211 ID=MsG0180005773.01.T01:cds;Parent=MsG0180005773.01.T01
Gene Sequence

>MsG0180005773.01.T01

ATGACGGTACCAAAGCAAAACTATACTCGAATAAACACTTTGGAGCTGAAAGCTGTTATTGTAAAGAAGGTTGGTAATGAGAAAGCTGGTACGTACTTTGATCAGCTTGGGAAGTTGGTTAGTTCAAAGATCAGCAAGGCTGAGTTTGACAAGATTTGCATCACGACGATTGGGAAGGAAAATGTTCCTCTTCATAATCAACTCATTAGGGCAATTCTGAAGAATGTTTGTTTGTCTAAAGTTCCACCTCATAGAAGTTCTGCAAAAAAAGAGAGGGTCTTGAATGCAAAAGATTCAAATCGGCAGCAGAGCAGATCAATTCAAATGCAGTACGGGGATGCCTTTCCTCCTTCCCTGCGCAGGGGTGGTTCTTTGGCTACTTGTGAAGGGATGCTTACGGGTCGTCGGAGTGCTTTGGGACAGTTAGGGAAGCCCCGAAACCTTGGATCTAAAGATTTGATCTATAAGACTCCAGAGCAGCAGAGTGCAACAGAACTGAATTCCCTTGGCAGCAGACCTCCTATTTCTGTTGAAGATGGAGAAGAGGTTGAACAGCTTGGTGGAAGCCCAAGCTCAAGCATTCAAAGTAAGAGTCCTGTTGCAGCCCCTCTTGGGATATCCATGAACTCTGGTTATGGACGTAGTCCTCTTTCTTTTGCATCATCATGCAGAAAGCATCCTCGAGAAACCTGTTTCAGCAATGGATATCTCCCTGACACATCATCTTTGAGGAGTCGTTTGGAGCAAAAGTTGAAGAAGGAGGGTTTAACCGTGACAGTGGATTGTGTAAATCTATTGAATAATGCAATGGATTCTTATCTGAGGAGGTTGGTTGAATCCTCTACGGGTTTATCATCTGGTTTAAGATTCGGAAATGAGCACCGAAGACAAGGAAATGGACAGTCAATAGCTGATTCAACTATACTGCAACCCAGAATGTATATGCAAACAGCAACACAATCTTCTTGCGCATCTCTCTTGGATTTTCGCGTTGCAATGGAATTAAATCCACAAGTTCTTGGACCAGATTGGCCCACACAGCTTGAGAAGATTTGTATACGTGCTTCTAATGAATGA

Protein sequence

>MsG0180005773.01.T01

MTVPKQNYTRINTLELKAVIVKKVGNEKAGTYFDQLGKLVSSKISKAEFDKICITTIGKENVPLHNQLIRAILKNVCLSKVPPHRSSAKKERVLNAKDSNRQQSRSIQMQYGDAFPPSLRRGGSLATCEGMLTGRRSALGQLGKPRNLGSKDLIYKTPEQQSATELNSLGSRPPISVEDGEEVEQLGGSPSSSIQSKSPVAAPLGISMNSGYGRSPLSFASSCRKHPRETCFSNGYLPDTSSLRSRLEQKLKKEGLTVTVDCVNLLNNAMDSYLRRLVESSTGLSSGLRFGNEHRRQGNGQSIADSTILQPRMYMQTATQSSCASLLDFRVAMELNPQVLGPDWPTQLEKICIRASNE*